Multiple sequence alignment - TraesCS2B01G408500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G408500 chr2B 100.000 5074 0 0 1 5074 581472274 581467201 0.000000e+00 9371.0
1 TraesCS2B01G408500 chr2B 94.421 466 21 5 2112 2574 42565213 42565676 0.000000e+00 712.0
2 TraesCS2B01G408500 chr2B 86.854 213 28 0 1272 1484 579690420 579690208 6.570000e-59 239.0
3 TraesCS2B01G408500 chr2B 91.503 153 9 3 1911 2062 42565044 42565193 1.850000e-49 207.0
4 TraesCS2B01G408500 chr2D 90.065 4751 197 112 1 4561 493178322 493173657 0.000000e+00 5904.0
5 TraesCS2B01G408500 chr2D 88.272 810 63 25 2069 2856 245572925 245572126 0.000000e+00 941.0
6 TraesCS2B01G408500 chr2D 84.797 296 41 4 1189 1483 493082071 493081779 1.380000e-75 294.0
7 TraesCS2B01G408500 chr2D 91.250 80 5 1 4995 5074 493170212 493170135 1.930000e-19 108.0
8 TraesCS2B01G408500 chr2A 88.938 3878 192 100 739 4475 640269489 640273270 0.000000e+00 4566.0
9 TraesCS2B01G408500 chr2A 88.049 820 65 23 2057 2856 424538351 424537545 0.000000e+00 941.0
10 TraesCS2B01G408500 chr2A 87.030 825 75 21 2053 2856 302436509 302437322 0.000000e+00 902.0
11 TraesCS2B01G408500 chr2A 88.676 521 27 18 127 628 640268922 640269429 1.560000e-169 606.0
12 TraesCS2B01G408500 chr2A 83.226 310 46 6 1178 1484 640706551 640706857 3.870000e-71 279.0
13 TraesCS2B01G408500 chr2A 89.091 110 11 1 1833 1942 424538457 424538349 8.860000e-28 135.0
14 TraesCS2B01G408500 chr2A 81.707 164 12 10 2821 2967 348628146 348627984 2.480000e-23 121.0
15 TraesCS2B01G408500 chr4A 86.855 814 79 18 2059 2856 535941617 535942418 0.000000e+00 885.0
16 TraesCS2B01G408500 chr4A 91.093 494 40 4 2112 2604 375968595 375968105 0.000000e+00 665.0
17 TraesCS2B01G408500 chr5A 86.797 818 75 22 2059 2856 222769966 222769162 0.000000e+00 881.0
18 TraesCS2B01G408500 chr5B 86.081 819 71 21 2059 2856 291605772 291604976 0.000000e+00 841.0
19 TraesCS2B01G408500 chr5B 81.758 899 99 36 1378 2225 496648921 496648037 0.000000e+00 691.0
20 TraesCS2B01G408500 chr5B 89.815 108 8 1 1003 1107 496649462 496649355 8.860000e-28 135.0
21 TraesCS2B01G408500 chr7B 85.628 828 74 25 2053 2856 428783798 428784604 0.000000e+00 828.0
22 TraesCS2B01G408500 chr7A 82.320 888 97 33 1374 2219 369895114 369894245 0.000000e+00 715.0
23 TraesCS2B01G408500 chr7A 90.935 353 27 4 1002 1350 369895451 369895100 2.140000e-128 470.0
24 TraesCS2B01G408500 chr7A 86.648 352 28 5 1002 1350 705117629 705117294 6.200000e-99 372.0
25 TraesCS2B01G408500 chr7A 86.080 352 30 7 1002 1350 408599456 408599791 1.340000e-95 361.0
26 TraesCS2B01G408500 chr7A 92.763 152 9 1 1911 2062 320367651 320367502 8.550000e-53 219.0
27 TraesCS2B01G408500 chr7A 82.873 181 28 3 1616 1796 611728487 611728664 5.260000e-35 159.0
28 TraesCS2B01G408500 chr6B 92.577 485 33 3 2112 2594 518610309 518610792 0.000000e+00 693.0
29 TraesCS2B01G408500 chr6B 83.733 375 39 13 1826 2185 637179454 637179821 8.140000e-88 335.0
30 TraesCS2B01G408500 chr6B 85.127 316 38 8 1171 1480 512234456 512234768 1.060000e-81 315.0
31 TraesCS2B01G408500 chr6B 93.793 145 6 2 1911 2054 518610139 518610281 1.110000e-51 215.0
32 TraesCS2B01G408500 chr6B 70.292 377 96 11 3343 3711 39062761 39062393 1.530000e-05 62.1
33 TraesCS2B01G408500 chr1B 81.630 871 114 27 1388 2225 82619649 82618792 0.000000e+00 680.0
34 TraesCS2B01G408500 chr1B 88.083 193 20 1 1002 1191 468219628 468219436 5.110000e-55 226.0
35 TraesCS2B01G408500 chr1A 81.440 889 92 31 1379 2219 382777870 382777007 0.000000e+00 660.0
36 TraesCS2B01G408500 chr1A 88.920 352 34 5 1002 1350 382778209 382777860 3.630000e-116 429.0
37 TraesCS2B01G408500 chr3B 86.648 352 28 9 1002 1350 397265564 397265229 6.200000e-99 372.0
38 TraesCS2B01G408500 chr3B 82.927 164 11 11 2821 2967 245468780 245468943 1.150000e-26 132.0
39 TraesCS2B01G408500 chr6A 85.759 316 36 8 1171 1480 452099972 452099660 4.900000e-85 326.0
40 TraesCS2B01G408500 chr6A 82.317 164 12 11 2821 2967 409745543 409745380 5.330000e-25 126.0
41 TraesCS2B01G408500 chr6A 70.557 377 95 11 3343 3711 22643792 22644160 3.280000e-07 67.6
42 TraesCS2B01G408500 chr6D 85.443 316 37 8 1171 1480 315178637 315178325 2.280000e-83 320.0
43 TraesCS2B01G408500 chr6D 100.000 33 0 0 3343 3375 24199047 24199015 1.530000e-05 62.1
44 TraesCS2B01G408500 chr7D 82.873 181 28 3 1616 1796 531439817 531439994 5.260000e-35 159.0
45 TraesCS2B01G408500 chr4B 94.366 71 4 0 2897 2967 205679087 205679157 5.370000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G408500 chr2B 581467201 581472274 5073 True 9371.0 9371 100.0000 1 5074 1 chr2B.!!$R2 5073
1 TraesCS2B01G408500 chr2B 42565044 42565676 632 False 459.5 712 92.9620 1911 2574 2 chr2B.!!$F1 663
2 TraesCS2B01G408500 chr2D 493170135 493178322 8187 True 3006.0 5904 90.6575 1 5074 2 chr2D.!!$R3 5073
3 TraesCS2B01G408500 chr2D 245572126 245572925 799 True 941.0 941 88.2720 2069 2856 1 chr2D.!!$R1 787
4 TraesCS2B01G408500 chr2A 640268922 640273270 4348 False 2586.0 4566 88.8070 127 4475 2 chr2A.!!$F3 4348
5 TraesCS2B01G408500 chr2A 302436509 302437322 813 False 902.0 902 87.0300 2053 2856 1 chr2A.!!$F1 803
6 TraesCS2B01G408500 chr2A 424537545 424538457 912 True 538.0 941 88.5700 1833 2856 2 chr2A.!!$R2 1023
7 TraesCS2B01G408500 chr4A 535941617 535942418 801 False 885.0 885 86.8550 2059 2856 1 chr4A.!!$F1 797
8 TraesCS2B01G408500 chr5A 222769162 222769966 804 True 881.0 881 86.7970 2059 2856 1 chr5A.!!$R1 797
9 TraesCS2B01G408500 chr5B 291604976 291605772 796 True 841.0 841 86.0810 2059 2856 1 chr5B.!!$R1 797
10 TraesCS2B01G408500 chr5B 496648037 496649462 1425 True 413.0 691 85.7865 1003 2225 2 chr5B.!!$R2 1222
11 TraesCS2B01G408500 chr7B 428783798 428784604 806 False 828.0 828 85.6280 2053 2856 1 chr7B.!!$F1 803
12 TraesCS2B01G408500 chr7A 369894245 369895451 1206 True 592.5 715 86.6275 1002 2219 2 chr7A.!!$R3 1217
13 TraesCS2B01G408500 chr6B 518610139 518610792 653 False 454.0 693 93.1850 1911 2594 2 chr6B.!!$F3 683
14 TraesCS2B01G408500 chr1B 82618792 82619649 857 True 680.0 680 81.6300 1388 2225 1 chr1B.!!$R1 837
15 TraesCS2B01G408500 chr1A 382777007 382778209 1202 True 544.5 660 85.1800 1002 2219 2 chr1A.!!$R1 1217

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 328 0.035056 AAGTGGATCGCAAGGAAGGG 60.035 55.000 0.00 0.00 38.47 3.95 F
604 660 0.104120 GTGGGTTTTGGCAACCAGAC 59.896 55.000 10.38 2.95 42.03 3.51 F
628 684 0.250338 AGAAAACCAGGTGAGTCGCC 60.250 55.000 15.29 15.29 0.00 5.54 F
629 685 0.250338 GAAAACCAGGTGAGTCGCCT 60.250 55.000 19.92 19.92 46.26 5.52 F
737 813 0.318762 AGTTTCACGTGCTCCTCCTC 59.681 55.000 11.67 0.00 0.00 3.71 F
1956 2354 0.458669 GACGGCGATTAGTCCTCCAA 59.541 55.000 16.62 0.00 0.00 3.53 F
2055 2458 1.399440 CATCGCTTGCTACAATGCTGT 59.601 47.619 0.00 0.00 39.75 4.40 F
3317 3816 0.804933 GGTACTTCGTGGTGATCGCC 60.805 60.000 18.84 18.84 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 2428 0.392461 TTGTAGCAAGCGATGACCCC 60.392 55.000 0.00 0.0 0.00 4.95 R
2524 2944 1.134438 AGGTGGGGAACTGGAGGAAC 61.134 60.000 0.00 0.0 0.00 3.62 R
2553 2973 1.197036 GTTACGTTTGCTTCCAGGCTC 59.803 52.381 0.00 0.0 0.00 4.70 R
2593 3028 3.855689 AAATTGTTCATTCAGCGAGGG 57.144 42.857 0.00 0.0 0.00 4.30 R
2659 3102 0.809241 CTGCAGTGGAATCGAGGAGC 60.809 60.000 5.25 0.0 0.00 4.70 R
3138 3635 0.535335 TCCTCATCCGCCACTACAAC 59.465 55.000 0.00 0.0 0.00 3.32 R
3365 3864 1.372582 CCATGTTCATGTCGGTGAGG 58.627 55.000 11.13 0.0 0.00 3.86 R
4756 5302 0.036105 TGCAGGAGATTGTGCGTGAT 60.036 50.000 0.00 0.0 42.96 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 4.638304 ACTAACTGAACAAGGCAATACGT 58.362 39.130 0.00 0.00 0.00 3.57
94 105 5.581479 TCGAAGCTTCAGAGTAGTACTACTG 59.419 44.000 34.67 23.49 45.63 2.74
106 117 8.358895 AGAGTAGTACTACTGGAACTGTTTTTC 58.641 37.037 34.67 17.87 45.63 2.29
107 118 8.247666 AGTAGTACTACTGGAACTGTTTTTCT 57.752 34.615 30.33 4.82 44.11 2.52
108 119 8.702819 AGTAGTACTACTGGAACTGTTTTTCTT 58.297 33.333 30.33 4.47 44.11 2.52
109 120 9.322773 GTAGTACTACTGGAACTGTTTTTCTTT 57.677 33.333 23.17 0.00 41.74 2.52
110 121 8.803397 AGTACTACTGGAACTGTTTTTCTTTT 57.197 30.769 0.00 0.00 41.74 2.27
111 122 9.895138 AGTACTACTGGAACTGTTTTTCTTTTA 57.105 29.630 0.00 0.00 41.74 1.52
158 169 3.515901 AGTGAGTCTAATCCAGTCCAACC 59.484 47.826 0.00 0.00 0.00 3.77
214 229 3.007614 ACAATGATATACTACCACGGGGC 59.992 47.826 1.73 0.00 37.90 5.80
215 230 2.385135 TGATATACTACCACGGGGCA 57.615 50.000 1.73 0.00 37.90 5.36
295 328 0.035056 AAGTGGATCGCAAGGAAGGG 60.035 55.000 0.00 0.00 38.47 3.95
604 660 0.104120 GTGGGTTTTGGCAACCAGAC 59.896 55.000 10.38 2.95 42.03 3.51
628 684 0.250338 AGAAAACCAGGTGAGTCGCC 60.250 55.000 15.29 15.29 0.00 5.54
629 685 0.250338 GAAAACCAGGTGAGTCGCCT 60.250 55.000 19.92 19.92 46.26 5.52
687 763 2.699251 ACGTTTCCATTTTTCGCTCC 57.301 45.000 0.00 0.00 0.00 4.70
690 766 2.979813 CGTTTCCATTTTTCGCTCCTTG 59.020 45.455 0.00 0.00 0.00 3.61
691 767 3.550030 CGTTTCCATTTTTCGCTCCTTGT 60.550 43.478 0.00 0.00 0.00 3.16
692 768 3.641437 TTCCATTTTTCGCTCCTTGTG 57.359 42.857 0.00 0.00 0.00 3.33
693 769 1.269448 TCCATTTTTCGCTCCTTGTGC 59.731 47.619 0.00 0.00 0.00 4.57
702 778 2.029288 CTCCTTGTGCGCGTCATGT 61.029 57.895 8.43 0.00 0.00 3.21
703 779 2.174107 CCTTGTGCGCGTCATGTG 59.826 61.111 8.43 0.99 0.00 3.21
704 780 2.606961 CCTTGTGCGCGTCATGTGT 61.607 57.895 8.43 0.00 0.00 3.72
705 781 1.279539 CTTGTGCGCGTCATGTGTT 59.720 52.632 8.43 0.00 0.00 3.32
706 782 0.993251 CTTGTGCGCGTCATGTGTTG 60.993 55.000 8.43 0.00 0.00 3.33
707 783 1.432270 TTGTGCGCGTCATGTGTTGA 61.432 50.000 8.43 0.00 0.00 3.18
708 784 1.227342 TGTGCGCGTCATGTGTTGAT 61.227 50.000 8.43 0.00 36.54 2.57
709 785 0.519175 GTGCGCGTCATGTGTTGATC 60.519 55.000 8.43 0.00 36.54 2.92
710 786 1.060937 GCGCGTCATGTGTTGATCC 59.939 57.895 8.43 0.00 36.54 3.36
711 787 1.361668 GCGCGTCATGTGTTGATCCT 61.362 55.000 8.43 0.00 36.54 3.24
712 788 1.078709 CGCGTCATGTGTTGATCCTT 58.921 50.000 0.00 0.00 36.54 3.36
713 789 1.061131 CGCGTCATGTGTTGATCCTTC 59.939 52.381 0.00 0.00 36.54 3.46
714 790 1.398390 GCGTCATGTGTTGATCCTTCC 59.602 52.381 0.00 0.00 36.54 3.46
715 791 2.936993 GCGTCATGTGTTGATCCTTCCT 60.937 50.000 0.00 0.00 36.54 3.36
716 792 3.678806 GCGTCATGTGTTGATCCTTCCTA 60.679 47.826 0.00 0.00 36.54 2.94
717 793 4.697514 CGTCATGTGTTGATCCTTCCTAT 58.302 43.478 0.00 0.00 36.54 2.57
718 794 5.739070 GCGTCATGTGTTGATCCTTCCTATA 60.739 44.000 0.00 0.00 36.54 1.31
719 795 5.923114 CGTCATGTGTTGATCCTTCCTATAG 59.077 44.000 0.00 0.00 36.54 1.31
720 796 6.461648 CGTCATGTGTTGATCCTTCCTATAGT 60.462 42.308 0.00 0.00 36.54 2.12
721 797 7.275920 GTCATGTGTTGATCCTTCCTATAGTT 58.724 38.462 0.00 0.00 36.54 2.24
722 798 7.770897 GTCATGTGTTGATCCTTCCTATAGTTT 59.229 37.037 0.00 0.00 36.54 2.66
723 799 7.987458 TCATGTGTTGATCCTTCCTATAGTTTC 59.013 37.037 0.00 0.00 0.00 2.78
724 800 7.252612 TGTGTTGATCCTTCCTATAGTTTCA 57.747 36.000 0.00 0.00 0.00 2.69
725 801 7.103641 TGTGTTGATCCTTCCTATAGTTTCAC 58.896 38.462 0.00 0.00 0.00 3.18
726 802 6.255887 GTGTTGATCCTTCCTATAGTTTCACG 59.744 42.308 0.00 0.00 0.00 4.35
727 803 6.070995 TGTTGATCCTTCCTATAGTTTCACGT 60.071 38.462 0.00 0.00 0.00 4.49
728 804 5.902681 TGATCCTTCCTATAGTTTCACGTG 58.097 41.667 9.94 9.94 0.00 4.49
729 805 4.119442 TCCTTCCTATAGTTTCACGTGC 57.881 45.455 11.67 0.00 0.00 5.34
730 806 3.767673 TCCTTCCTATAGTTTCACGTGCT 59.232 43.478 11.67 4.94 0.00 4.40
731 807 4.113354 CCTTCCTATAGTTTCACGTGCTC 58.887 47.826 11.67 3.50 0.00 4.26
732 808 3.795623 TCCTATAGTTTCACGTGCTCC 57.204 47.619 11.67 0.00 0.00 4.70
733 809 3.362706 TCCTATAGTTTCACGTGCTCCT 58.637 45.455 11.67 8.22 0.00 3.69
734 810 3.380637 TCCTATAGTTTCACGTGCTCCTC 59.619 47.826 11.67 0.00 0.00 3.71
735 811 2.674796 ATAGTTTCACGTGCTCCTCC 57.325 50.000 11.67 0.00 0.00 4.30
736 812 1.629043 TAGTTTCACGTGCTCCTCCT 58.371 50.000 11.67 3.18 0.00 3.69
737 813 0.318762 AGTTTCACGTGCTCCTCCTC 59.681 55.000 11.67 0.00 0.00 3.71
750 826 1.925959 TCCTCCTCATCCTCTCACTCA 59.074 52.381 0.00 0.00 0.00 3.41
792 872 2.109126 GCGGATGCACCCAGTCTTC 61.109 63.158 0.00 0.00 42.15 2.87
813 904 9.486857 GTCTTCCTTTGCGTTTTCTATTATTAC 57.513 33.333 0.00 0.00 0.00 1.89
865 957 8.594687 GGCAATTGTTTGTTTAATATGCTACTG 58.405 33.333 7.40 0.00 35.17 2.74
954 1046 2.033141 AAGCGCTGCACATGGACT 59.967 55.556 12.58 0.00 0.00 3.85
955 1047 1.020861 CAAGCGCTGCACATGGACTA 61.021 55.000 12.58 0.00 0.00 2.59
956 1048 1.021390 AAGCGCTGCACATGGACTAC 61.021 55.000 12.58 0.00 0.00 2.73
1030 1122 2.485122 GTTTTCATCCCCGCAGCG 59.515 61.111 8.18 8.18 0.00 5.18
1031 1123 3.439540 TTTTCATCCCCGCAGCGC 61.440 61.111 10.07 0.00 0.00 5.92
1032 1124 4.713735 TTTCATCCCCGCAGCGCA 62.714 61.111 11.47 0.00 0.00 6.09
1296 1618 0.926155 CCGTGATCGTCATGAAGCTG 59.074 55.000 3.49 0.00 35.46 4.24
1499 1838 1.034838 AAGTCCATCTCTCTCGCGCT 61.035 55.000 5.56 0.00 0.00 5.92
1520 1860 4.604976 CTGGCCTGATCGAAAATCAATTC 58.395 43.478 3.32 0.00 0.00 2.17
1533 1874 7.763528 TCGAAAATCAATTCATTACCCCAATTG 59.236 33.333 0.00 0.00 38.39 2.32
1561 1914 5.450453 TCCCCGCCATTTTTAGATCAAATA 58.550 37.500 0.00 0.00 0.00 1.40
1780 2141 3.334054 GGCCTCCTCACCCTGCTT 61.334 66.667 0.00 0.00 0.00 3.91
1806 2172 5.850614 TCTCAGAAAGGTACAGTACAAACC 58.149 41.667 12.89 0.00 0.00 3.27
1828 2199 2.425143 TCCATTTCCATGCTCCTGTC 57.575 50.000 0.00 0.00 0.00 3.51
1831 2202 2.022195 CATTTCCATGCTCCTGTCCTG 58.978 52.381 0.00 0.00 0.00 3.86
1956 2354 0.458669 GACGGCGATTAGTCCTCCAA 59.541 55.000 16.62 0.00 0.00 3.53
1962 2360 2.482142 GCGATTAGTCCTCCAACTCCTG 60.482 54.545 0.00 0.00 0.00 3.86
1999 2397 4.993705 TCCCCTGTTCTCACTTGTTAAT 57.006 40.909 0.00 0.00 0.00 1.40
2055 2458 1.399440 CATCGCTTGCTACAATGCTGT 59.601 47.619 0.00 0.00 39.75 4.40
2073 2476 1.918262 TGTCGGAACCTCCCTAGTCTA 59.082 52.381 0.00 0.00 31.13 2.59
2110 2516 9.985318 GTTCTTGATCAGAAAGATATTCACAAG 57.015 33.333 8.55 0.00 43.52 3.16
2393 2808 3.004752 ACGCTTTAGAAATGGATGGCT 57.995 42.857 0.00 0.00 0.00 4.75
2443 2862 3.289834 CGCAACAGGCAGCAGGTT 61.290 61.111 0.00 0.00 45.17 3.50
2553 2973 1.559065 TTCCCCACCTTCGGGCTAAG 61.559 60.000 0.00 0.00 45.90 2.18
2637 3080 4.158764 TCAAGTTTCGGTGGTTGAAAATGT 59.841 37.500 0.00 0.00 37.10 2.71
2640 3083 6.009115 AGTTTCGGTGGTTGAAAATGTATC 57.991 37.500 0.00 0.00 37.10 2.24
2642 3085 6.039941 AGTTTCGGTGGTTGAAAATGTATCAA 59.960 34.615 0.00 0.00 37.10 2.57
2644 3087 6.582677 TCGGTGGTTGAAAATGTATCAAAT 57.417 33.333 0.00 0.00 38.44 2.32
2646 3089 7.531716 TCGGTGGTTGAAAATGTATCAAATAC 58.468 34.615 0.00 0.00 38.44 1.89
2669 3112 4.386867 TCATCGTTTTAGCTCCTCGATT 57.613 40.909 11.37 0.00 38.82 3.34
2670 3113 4.360563 TCATCGTTTTAGCTCCTCGATTC 58.639 43.478 11.37 0.00 38.82 2.52
2671 3114 3.160777 TCGTTTTAGCTCCTCGATTCC 57.839 47.619 0.00 0.00 0.00 3.01
2672 3115 2.494471 TCGTTTTAGCTCCTCGATTCCA 59.506 45.455 0.00 0.00 0.00 3.53
2748 3195 1.867919 CGCACCTCGTCAACCTCTCT 61.868 60.000 0.00 0.00 0.00 3.10
2775 3222 4.821589 GGCGCCGTCCTCTCTTGG 62.822 72.222 12.58 0.00 0.00 3.61
2907 3384 6.012070 GTGTGTTACTGAATTCAGGCACAAC 61.012 44.000 36.07 30.02 46.02 3.32
2929 3410 1.414550 GCTTAGACTGTCCCCTCCATC 59.585 57.143 3.76 0.00 0.00 3.51
2930 3411 2.043227 CTTAGACTGTCCCCTCCATCC 58.957 57.143 3.76 0.00 0.00 3.51
3065 3546 5.491982 GTCTCAACAGAGGTGAATTATGGT 58.508 41.667 0.00 0.00 0.00 3.55
3067 3548 7.275920 GTCTCAACAGAGGTGAATTATGGTAT 58.724 38.462 0.00 0.00 0.00 2.73
3104 3585 4.840772 CGCGTTTCTTTGATCTGTTGTTAG 59.159 41.667 0.00 0.00 0.00 2.34
3105 3586 4.613031 GCGTTTCTTTGATCTGTTGTTAGC 59.387 41.667 0.00 0.00 0.00 3.09
3127 3612 3.688272 GATGAAATGAACCATGCTGACG 58.312 45.455 0.00 0.00 0.00 4.35
3129 3626 2.483877 TGAAATGAACCATGCTGACGTC 59.516 45.455 9.11 9.11 0.00 4.34
3317 3816 0.804933 GGTACTTCGTGGTGATCGCC 60.805 60.000 18.84 18.84 0.00 5.54
3386 3885 0.676466 TCACCGACATGAACATGGGC 60.676 55.000 17.25 9.04 42.91 5.36
3924 4423 1.148273 GTGGTGTTCCTCTGGCACA 59.852 57.895 0.00 0.00 35.05 4.57
3925 4424 0.465460 GTGGTGTTCCTCTGGCACAA 60.465 55.000 0.00 0.00 35.05 3.33
4076 4575 3.148279 ACGCCCGGAAGCTAGAGG 61.148 66.667 0.73 0.00 0.00 3.69
4077 4576 2.833582 CGCCCGGAAGCTAGAGGA 60.834 66.667 0.73 0.00 0.00 3.71
4078 4577 2.203771 CGCCCGGAAGCTAGAGGAT 61.204 63.158 0.73 0.00 0.00 3.24
4079 4578 1.668867 GCCCGGAAGCTAGAGGATC 59.331 63.158 0.73 0.00 0.00 3.36
4141 4643 5.990120 AGAAGCAAATAACCAGAGCATTT 57.010 34.783 0.00 0.00 0.00 2.32
4142 4644 6.350629 AGAAGCAAATAACCAGAGCATTTT 57.649 33.333 0.00 0.00 0.00 1.82
4143 4645 6.161381 AGAAGCAAATAACCAGAGCATTTTG 58.839 36.000 0.00 0.00 0.00 2.44
4144 4646 4.824289 AGCAAATAACCAGAGCATTTTGG 58.176 39.130 0.00 0.00 40.38 3.28
4145 4647 3.934579 GCAAATAACCAGAGCATTTTGGG 59.065 43.478 0.00 0.00 38.82 4.12
4146 4648 4.506758 CAAATAACCAGAGCATTTTGGGG 58.493 43.478 0.00 0.00 38.82 4.96
4148 4650 2.101640 AACCAGAGCATTTTGGGGTT 57.898 45.000 0.00 0.00 38.82 4.11
4149 4651 2.990740 ACCAGAGCATTTTGGGGTTA 57.009 45.000 0.00 0.00 38.82 2.85
4150 4652 3.473113 ACCAGAGCATTTTGGGGTTAT 57.527 42.857 0.00 0.00 38.82 1.89
4151 4653 3.365472 ACCAGAGCATTTTGGGGTTATC 58.635 45.455 0.00 0.00 38.82 1.75
4152 4654 3.245586 ACCAGAGCATTTTGGGGTTATCA 60.246 43.478 0.00 0.00 38.82 2.15
4153 4655 3.962718 CCAGAGCATTTTGGGGTTATCAT 59.037 43.478 0.00 0.00 0.00 2.45
4154 4656 5.139727 CCAGAGCATTTTGGGGTTATCATA 58.860 41.667 0.00 0.00 0.00 2.15
4201 4703 1.808343 GGTAAATCCGGCGACTTGTTT 59.192 47.619 9.30 4.42 0.00 2.83
4205 4707 5.294060 GGTAAATCCGGCGACTTGTTTATAA 59.706 40.000 9.30 0.00 0.00 0.98
4384 4886 6.841443 TTAGAGGAGTAAATCGTCGAGTAG 57.159 41.667 0.00 0.00 45.53 2.57
4480 4988 2.475111 ACTTGCATTTGACTCGTACACG 59.525 45.455 0.00 0.00 41.45 4.49
4484 4992 2.577450 CATTTGACTCGTACACGTCGA 58.423 47.619 0.00 0.00 40.80 4.20
4489 4997 2.738139 TCGTACACGTCGAGGCGA 60.738 61.111 3.46 3.28 40.80 5.54
4490 4998 2.276493 CGTACACGTCGAGGCGAG 60.276 66.667 3.46 0.00 36.23 5.03
4491 4999 2.576317 GTACACGTCGAGGCGAGC 60.576 66.667 3.46 0.00 36.23 5.03
4492 5000 4.156622 TACACGTCGAGGCGAGCG 62.157 66.667 3.46 0.00 36.23 5.03
4537 5049 1.599542 GTCCGCTACCAAATGCATCTC 59.400 52.381 0.00 0.00 0.00 2.75
4538 5050 1.209261 TCCGCTACCAAATGCATCTCA 59.791 47.619 0.00 0.00 0.00 3.27
4599 5145 4.695560 CCGAGTGGTGGGAGTTTC 57.304 61.111 0.00 0.00 0.00 2.78
4600 5146 1.374252 CCGAGTGGTGGGAGTTTCG 60.374 63.158 0.00 0.00 0.00 3.46
4601 5147 1.663739 CGAGTGGTGGGAGTTTCGA 59.336 57.895 0.00 0.00 0.00 3.71
4602 5148 0.032952 CGAGTGGTGGGAGTTTCGAA 59.967 55.000 0.00 0.00 0.00 3.71
4603 5149 1.337823 CGAGTGGTGGGAGTTTCGAAT 60.338 52.381 0.00 0.00 0.00 3.34
4604 5150 2.347731 GAGTGGTGGGAGTTTCGAATC 58.652 52.381 0.00 0.00 0.00 2.52
4605 5151 1.697432 AGTGGTGGGAGTTTCGAATCA 59.303 47.619 8.83 0.00 0.00 2.57
4606 5152 2.305927 AGTGGTGGGAGTTTCGAATCAT 59.694 45.455 8.83 0.00 0.00 2.45
4607 5153 2.678336 GTGGTGGGAGTTTCGAATCATC 59.322 50.000 8.83 3.09 0.00 2.92
4608 5154 2.289565 GGTGGGAGTTTCGAATCATCC 58.710 52.381 12.92 12.92 0.00 3.51
4610 5156 1.583054 GGGAGTTTCGAATCATCCCG 58.417 55.000 20.70 0.00 40.28 5.14
4611 5157 1.583054 GGAGTTTCGAATCATCCCGG 58.417 55.000 8.83 0.00 0.00 5.73
4612 5158 1.583054 GAGTTTCGAATCATCCCGGG 58.417 55.000 16.85 16.85 0.00 5.73
4613 5159 0.180406 AGTTTCGAATCATCCCGGGG 59.820 55.000 23.50 6.77 0.00 5.73
4614 5160 0.107361 GTTTCGAATCATCCCGGGGT 60.107 55.000 23.50 12.21 0.00 4.95
4615 5161 1.139455 GTTTCGAATCATCCCGGGGTA 59.861 52.381 23.50 1.15 0.00 3.69
4616 5162 0.754472 TTCGAATCATCCCGGGGTAC 59.246 55.000 23.50 4.95 0.00 3.34
4649 5195 3.377656 GCTCCACGACTTCCTCCA 58.622 61.111 0.00 0.00 0.00 3.86
4650 5196 1.216710 GCTCCACGACTTCCTCCAG 59.783 63.158 0.00 0.00 0.00 3.86
4651 5197 1.536943 GCTCCACGACTTCCTCCAGT 61.537 60.000 0.00 0.00 0.00 4.00
4652 5198 0.244994 CTCCACGACTTCCTCCAGTG 59.755 60.000 0.00 0.00 0.00 3.66
4653 5199 1.293498 CCACGACTTCCTCCAGTGG 59.707 63.158 1.40 1.40 45.01 4.00
4654 5200 1.374758 CACGACTTCCTCCAGTGGC 60.375 63.158 3.51 0.00 0.00 5.01
4655 5201 2.266055 CGACTTCCTCCAGTGGCC 59.734 66.667 3.51 0.00 0.00 5.36
4656 5202 2.266055 GACTTCCTCCAGTGGCCG 59.734 66.667 3.51 0.00 0.00 6.13
4657 5203 3.316573 GACTTCCTCCAGTGGCCGG 62.317 68.421 3.51 7.67 0.00 6.13
4658 5204 3.003173 CTTCCTCCAGTGGCCGGA 61.003 66.667 5.05 14.08 0.00 5.14
4663 5209 4.631740 TCCAGTGGCCGGAGACCA 62.632 66.667 5.05 0.00 33.84 4.02
4664 5210 3.402681 CCAGTGGCCGGAGACCAT 61.403 66.667 5.05 0.00 39.95 3.55
4665 5211 2.124983 CAGTGGCCGGAGACCATG 60.125 66.667 5.05 0.26 39.95 3.66
4666 5212 2.607750 AGTGGCCGGAGACCATGT 60.608 61.111 5.05 0.00 39.95 3.21
4667 5213 2.224159 AGTGGCCGGAGACCATGTT 61.224 57.895 5.05 0.00 39.95 2.71
4668 5214 0.907704 AGTGGCCGGAGACCATGTTA 60.908 55.000 5.05 0.00 39.95 2.41
4669 5215 0.180406 GTGGCCGGAGACCATGTTAT 59.820 55.000 5.05 0.00 39.95 1.89
4670 5216 0.180171 TGGCCGGAGACCATGTTATG 59.820 55.000 5.05 0.00 30.29 1.90
4679 5225 3.312404 CCATGTTATGGGAGCTCCG 57.688 57.895 26.36 9.75 46.86 4.63
4680 5226 0.250467 CCATGTTATGGGAGCTCCGG 60.250 60.000 26.36 15.09 46.86 5.14
4681 5227 0.250467 CATGTTATGGGAGCTCCGGG 60.250 60.000 26.36 5.55 38.76 5.73
4682 5228 0.694444 ATGTTATGGGAGCTCCGGGT 60.694 55.000 26.36 16.34 38.76 5.28
4683 5229 1.146263 GTTATGGGAGCTCCGGGTG 59.854 63.158 26.36 0.00 38.76 4.61
4684 5230 2.070039 TTATGGGAGCTCCGGGTGG 61.070 63.158 26.36 0.00 38.76 4.61
4685 5231 2.539277 TTATGGGAGCTCCGGGTGGA 62.539 60.000 26.36 7.33 43.88 4.02
4693 5239 3.003173 TCCGGGTGGAGCTCAAGG 61.003 66.667 17.19 10.57 40.17 3.61
4694 5240 3.003173 CCGGGTGGAGCTCAAGGA 61.003 66.667 17.19 0.00 37.49 3.36
4695 5241 2.266055 CGGGTGGAGCTCAAGGAC 59.734 66.667 17.19 5.99 0.00 3.85
4696 5242 2.266055 GGGTGGAGCTCAAGGACG 59.734 66.667 17.19 0.00 0.00 4.79
4697 5243 2.283529 GGGTGGAGCTCAAGGACGA 61.284 63.158 17.19 0.00 0.00 4.20
4698 5244 1.079750 GGTGGAGCTCAAGGACGAC 60.080 63.158 17.19 0.00 0.00 4.34
4699 5245 1.079750 GTGGAGCTCAAGGACGACC 60.080 63.158 17.19 0.00 0.00 4.79
4708 5254 3.681835 AGGACGACCTGACCGTGC 61.682 66.667 5.39 0.00 45.92 5.34
4709 5255 3.681835 GGACGACCTGACCGTGCT 61.682 66.667 0.00 0.00 43.42 4.40
4710 5256 2.430921 GACGACCTGACCGTGCTG 60.431 66.667 0.00 0.00 40.67 4.41
4711 5257 3.916392 GACGACCTGACCGTGCTGG 62.916 68.421 0.00 0.00 40.67 4.85
4712 5258 3.680786 CGACCTGACCGTGCTGGA 61.681 66.667 2.38 0.00 42.00 3.86
4713 5259 2.262915 GACCTGACCGTGCTGGAG 59.737 66.667 2.38 0.00 42.00 3.86
4714 5260 2.203640 ACCTGACCGTGCTGGAGA 60.204 61.111 2.38 0.00 42.00 3.71
4715 5261 1.816863 GACCTGACCGTGCTGGAGAA 61.817 60.000 2.38 0.00 42.00 2.87
4716 5262 1.374758 CCTGACCGTGCTGGAGAAC 60.375 63.158 2.38 0.00 42.00 3.01
4717 5263 1.374758 CTGACCGTGCTGGAGAACC 60.375 63.158 2.38 0.00 42.00 3.62
4718 5264 2.047179 GACCGTGCTGGAGAACCC 60.047 66.667 2.38 0.00 42.00 4.11
4719 5265 3.607370 GACCGTGCTGGAGAACCCC 62.607 68.421 2.38 0.00 42.00 4.95
4720 5266 4.760047 CCGTGCTGGAGAACCCCG 62.760 72.222 0.00 0.00 42.00 5.73
4730 5276 4.778143 GAACCCCGCGCACTCCAT 62.778 66.667 8.75 0.00 0.00 3.41
4731 5277 4.344865 AACCCCGCGCACTCCATT 62.345 61.111 8.75 0.00 0.00 3.16
4738 5284 4.170062 CGCACTCCATTGCCGCAG 62.170 66.667 0.00 0.00 39.53 5.18
4739 5285 4.487412 GCACTCCATTGCCGCAGC 62.487 66.667 0.00 0.00 36.42 5.25
4752 5298 3.376918 GCAGCAAAGGCCAGGGAC 61.377 66.667 5.01 0.00 42.56 4.46
4753 5299 2.115910 CAGCAAAGGCCAGGGACA 59.884 61.111 5.01 0.00 42.56 4.02
4754 5300 1.531365 CAGCAAAGGCCAGGGACAA 60.531 57.895 5.01 0.00 42.56 3.18
4755 5301 1.228675 AGCAAAGGCCAGGGACAAG 60.229 57.895 5.01 0.00 42.56 3.16
4756 5302 1.228552 GCAAAGGCCAGGGACAAGA 60.229 57.895 5.01 0.00 0.00 3.02
4757 5303 0.613012 GCAAAGGCCAGGGACAAGAT 60.613 55.000 5.01 0.00 0.00 2.40
4758 5304 1.467920 CAAAGGCCAGGGACAAGATC 58.532 55.000 5.01 0.00 0.00 2.75
4759 5305 1.075601 AAAGGCCAGGGACAAGATCA 58.924 50.000 5.01 0.00 0.00 2.92
4760 5306 0.329596 AAGGCCAGGGACAAGATCAC 59.670 55.000 5.01 0.00 0.00 3.06
4761 5307 1.450312 GGCCAGGGACAAGATCACG 60.450 63.158 0.00 0.00 35.00 4.35
4762 5308 2.109126 GCCAGGGACAAGATCACGC 61.109 63.158 0.00 0.00 35.00 5.34
4763 5309 1.296392 CCAGGGACAAGATCACGCA 59.704 57.895 0.00 0.00 35.00 5.24
4764 5310 1.021390 CCAGGGACAAGATCACGCAC 61.021 60.000 0.00 0.00 35.00 5.34
4765 5311 0.320683 CAGGGACAAGATCACGCACA 60.321 55.000 0.00 0.00 35.00 4.57
4766 5312 0.396435 AGGGACAAGATCACGCACAA 59.604 50.000 0.00 0.00 35.00 3.33
4767 5313 1.003580 AGGGACAAGATCACGCACAAT 59.996 47.619 0.00 0.00 35.00 2.71
4768 5314 1.398390 GGGACAAGATCACGCACAATC 59.602 52.381 0.00 0.00 0.00 2.67
4769 5315 2.350522 GGACAAGATCACGCACAATCT 58.649 47.619 0.00 0.00 33.67 2.40
4770 5316 2.349886 GGACAAGATCACGCACAATCTC 59.650 50.000 0.00 0.00 31.03 2.75
4771 5317 2.349886 GACAAGATCACGCACAATCTCC 59.650 50.000 0.00 0.00 31.03 3.71
4772 5318 2.027745 ACAAGATCACGCACAATCTCCT 60.028 45.455 0.00 0.00 31.03 3.69
4773 5319 2.306341 AGATCACGCACAATCTCCTG 57.694 50.000 0.00 0.00 0.00 3.86
4774 5320 0.654683 GATCACGCACAATCTCCTGC 59.345 55.000 0.00 0.00 0.00 4.85
4775 5321 0.036105 ATCACGCACAATCTCCTGCA 60.036 50.000 0.00 0.00 32.57 4.41
4776 5322 0.036105 TCACGCACAATCTCCTGCAT 60.036 50.000 0.00 0.00 32.57 3.96
4777 5323 0.376152 CACGCACAATCTCCTGCATC 59.624 55.000 0.00 0.00 32.57 3.91
4778 5324 0.036105 ACGCACAATCTCCTGCATCA 60.036 50.000 0.00 0.00 32.57 3.07
4779 5325 1.306148 CGCACAATCTCCTGCATCAT 58.694 50.000 0.00 0.00 32.57 2.45
4780 5326 1.002792 CGCACAATCTCCTGCATCATG 60.003 52.381 0.00 0.00 32.57 3.07
4781 5327 1.337071 GCACAATCTCCTGCATCATGG 59.663 52.381 0.00 0.00 33.31 3.66
4782 5328 1.337071 CACAATCTCCTGCATCATGGC 59.663 52.381 0.00 0.00 0.00 4.40
4783 5329 0.959553 CAATCTCCTGCATCATGGCC 59.040 55.000 0.00 0.00 0.00 5.36
4784 5330 0.851469 AATCTCCTGCATCATGGCCT 59.149 50.000 3.32 0.00 0.00 5.19
4785 5331 0.851469 ATCTCCTGCATCATGGCCTT 59.149 50.000 3.32 0.00 0.00 4.35
4786 5332 0.106868 TCTCCTGCATCATGGCCTTG 60.107 55.000 12.41 12.41 0.00 3.61
4787 5333 1.735376 CTCCTGCATCATGGCCTTGC 61.735 60.000 13.75 12.69 36.91 4.01
4798 5344 4.400961 GCCTTGCCAGCTCCGACT 62.401 66.667 0.00 0.00 0.00 4.18
4799 5345 3.019003 GCCTTGCCAGCTCCGACTA 62.019 63.158 0.00 0.00 0.00 2.59
4800 5346 1.153549 CCTTGCCAGCTCCGACTAC 60.154 63.158 0.00 0.00 0.00 2.73
4801 5347 1.591703 CTTGCCAGCTCCGACTACA 59.408 57.895 0.00 0.00 0.00 2.74
4802 5348 0.037326 CTTGCCAGCTCCGACTACAA 60.037 55.000 0.00 0.00 0.00 2.41
4803 5349 0.037326 TTGCCAGCTCCGACTACAAG 60.037 55.000 0.00 0.00 0.00 3.16
4804 5350 0.898326 TGCCAGCTCCGACTACAAGA 60.898 55.000 0.00 0.00 0.00 3.02
4805 5351 0.179124 GCCAGCTCCGACTACAAGAG 60.179 60.000 0.00 0.00 0.00 2.85
4806 5352 0.457851 CCAGCTCCGACTACAAGAGG 59.542 60.000 0.00 0.00 0.00 3.69
4807 5353 0.179124 CAGCTCCGACTACAAGAGGC 60.179 60.000 0.00 0.00 0.00 4.70
4808 5354 0.323908 AGCTCCGACTACAAGAGGCT 60.324 55.000 0.00 0.00 0.00 4.58
4809 5355 0.179124 GCTCCGACTACAAGAGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
4810 5356 0.179124 CTCCGACTACAAGAGGCTGC 60.179 60.000 0.00 0.00 0.00 5.25
4811 5357 0.898326 TCCGACTACAAGAGGCTGCA 60.898 55.000 0.50 0.00 0.00 4.41
4812 5358 0.459237 CCGACTACAAGAGGCTGCAG 60.459 60.000 10.11 10.11 0.00 4.41
4813 5359 0.459237 CGACTACAAGAGGCTGCAGG 60.459 60.000 17.12 0.00 0.00 4.85
4814 5360 0.107945 GACTACAAGAGGCTGCAGGG 60.108 60.000 17.12 0.00 0.00 4.45
4815 5361 0.838122 ACTACAAGAGGCTGCAGGGT 60.838 55.000 17.12 0.00 0.00 4.34
4816 5362 0.392193 CTACAAGAGGCTGCAGGGTG 60.392 60.000 17.12 0.00 0.00 4.61
4817 5363 1.127567 TACAAGAGGCTGCAGGGTGT 61.128 55.000 17.12 2.83 0.00 4.16
4818 5364 1.228367 CAAGAGGCTGCAGGGTGTT 60.228 57.895 17.12 0.00 0.00 3.32
4819 5365 1.228367 AAGAGGCTGCAGGGTGTTG 60.228 57.895 17.12 0.00 0.00 3.33
4820 5366 2.674380 GAGGCTGCAGGGTGTTGG 60.674 66.667 17.12 0.00 0.00 3.77
4821 5367 4.982701 AGGCTGCAGGGTGTTGGC 62.983 66.667 17.12 0.00 0.00 4.52
4825 5371 3.497115 TGCAGGGTGTTGGCAGGA 61.497 61.111 0.00 0.00 32.95 3.86
4826 5372 2.674380 GCAGGGTGTTGGCAGGAG 60.674 66.667 0.00 0.00 0.00 3.69
4827 5373 3.160585 CAGGGTGTTGGCAGGAGA 58.839 61.111 0.00 0.00 0.00 3.71
4828 5374 1.687612 CAGGGTGTTGGCAGGAGAT 59.312 57.895 0.00 0.00 0.00 2.75
4829 5375 0.393537 CAGGGTGTTGGCAGGAGATC 60.394 60.000 0.00 0.00 0.00 2.75
4830 5376 1.450312 GGGTGTTGGCAGGAGATCG 60.450 63.158 0.00 0.00 0.00 3.69
4831 5377 1.596934 GGTGTTGGCAGGAGATCGA 59.403 57.895 0.00 0.00 0.00 3.59
4832 5378 0.741221 GGTGTTGGCAGGAGATCGAC 60.741 60.000 0.00 0.00 0.00 4.20
4833 5379 1.078759 GTGTTGGCAGGAGATCGACG 61.079 60.000 0.00 0.00 0.00 5.12
4834 5380 1.248101 TGTTGGCAGGAGATCGACGA 61.248 55.000 0.00 0.00 0.00 4.20
4835 5381 0.526524 GTTGGCAGGAGATCGACGAG 60.527 60.000 3.01 0.00 0.00 4.18
4836 5382 1.667154 TTGGCAGGAGATCGACGAGG 61.667 60.000 3.01 0.00 0.00 4.63
4837 5383 2.026879 GCAGGAGATCGACGAGGC 59.973 66.667 3.01 0.00 0.00 4.70
4838 5384 2.485795 GCAGGAGATCGACGAGGCT 61.486 63.158 3.01 3.01 0.00 4.58
4839 5385 1.167155 GCAGGAGATCGACGAGGCTA 61.167 60.000 3.01 0.00 0.00 3.93
4840 5386 0.589223 CAGGAGATCGACGAGGCTAC 59.411 60.000 3.01 4.15 0.00 3.58
4841 5387 0.881159 AGGAGATCGACGAGGCTACG 60.881 60.000 3.01 0.00 39.31 3.51
4842 5388 1.570475 GAGATCGACGAGGCTACGG 59.430 63.158 3.01 0.00 37.61 4.02
4843 5389 1.843734 GAGATCGACGAGGCTACGGG 61.844 65.000 3.01 3.41 37.61 5.28
4844 5390 2.124403 ATCGACGAGGCTACGGGT 60.124 61.111 3.01 0.00 37.61 5.28
4845 5391 2.389866 GATCGACGAGGCTACGGGTG 62.390 65.000 3.01 1.61 37.61 4.61
4951 5498 1.704641 AAAACCTCTGGAAAGGCCAC 58.295 50.000 5.01 0.00 43.33 5.01
4952 5499 0.178961 AAACCTCTGGAAAGGCCACC 60.179 55.000 5.01 6.06 43.33 4.61
4953 5500 1.360393 AACCTCTGGAAAGGCCACCA 61.360 55.000 5.01 10.91 43.33 4.17
4959 5506 1.284785 CTGGAAAGGCCACCAAGGATA 59.715 52.381 5.01 0.00 43.33 2.59
4998 5545 6.920569 ACCGTTAATAAGCAATCTGTTAGG 57.079 37.500 0.00 0.00 0.00 2.69
4999 5546 6.412214 ACCGTTAATAAGCAATCTGTTAGGT 58.588 36.000 0.00 0.00 0.00 3.08
5002 8793 7.148306 CCGTTAATAAGCAATCTGTTAGGTGTT 60.148 37.037 0.00 0.00 0.00 3.32
5013 8804 8.388103 CAATCTGTTAGGTGTTTTCCGTTATAG 58.612 37.037 0.00 0.00 0.00 1.31
5020 8811 3.246936 GTGTTTTCCGTTATAGGCGATCC 59.753 47.826 0.00 0.00 0.00 3.36
5021 8812 2.427232 TTTCCGTTATAGGCGATCCG 57.573 50.000 0.00 0.00 37.47 4.18
5054 8845 9.358872 GCTGGTTAGAGGAGAAAAATAAATTTG 57.641 33.333 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.168503 TGCGTGTGTCGTTGTGTCC 61.169 57.895 0.00 0.00 42.13 4.02
24 25 0.248580 TTAGTCGTGCGTGTGTCGTT 60.249 50.000 0.00 0.00 42.13 3.85
28 29 0.382873 TCAGTTAGTCGTGCGTGTGT 59.617 50.000 0.00 0.00 0.00 3.72
94 105 7.380333 CACCCGTAATAAAAGAAAAACAGTTCC 59.620 37.037 0.00 0.00 0.00 3.62
106 117 6.703165 GGATGTAGTACCACCCGTAATAAAAG 59.297 42.308 0.00 0.00 29.76 2.27
107 118 6.581712 GGATGTAGTACCACCCGTAATAAAA 58.418 40.000 0.00 0.00 29.76 1.52
108 119 5.221224 CGGATGTAGTACCACCCGTAATAAA 60.221 44.000 13.63 0.00 29.76 1.40
109 120 4.278170 CGGATGTAGTACCACCCGTAATAA 59.722 45.833 13.63 0.00 29.76 1.40
110 121 3.820467 CGGATGTAGTACCACCCGTAATA 59.180 47.826 13.63 0.00 33.02 0.98
111 122 2.624838 CGGATGTAGTACCACCCGTAAT 59.375 50.000 13.63 0.00 33.02 1.89
214 229 4.547905 CCGATCGTCGTCCCCGTG 62.548 72.222 15.09 0.00 38.40 4.94
236 264 1.529010 GGGATCGCGACGTTCAAAATG 60.529 52.381 12.93 0.00 0.00 2.32
295 328 3.793144 CGCCAGCGCTTGTTCCTC 61.793 66.667 7.50 0.00 0.00 3.71
604 660 2.291741 GACTCACCTGGTTTTCTTGCAG 59.708 50.000 0.00 0.00 0.00 4.41
632 688 0.171455 GAACTCTGACGAGCATCCGT 59.829 55.000 0.00 0.00 46.43 4.69
635 691 1.658095 GCAAGAACTCTGACGAGCATC 59.342 52.381 0.00 0.00 41.09 3.91
687 763 0.993251 CAACACATGACGCGCACAAG 60.993 55.000 5.73 6.81 0.00 3.16
690 766 0.519175 GATCAACACATGACGCGCAC 60.519 55.000 5.73 0.41 41.93 5.34
691 767 1.634757 GGATCAACACATGACGCGCA 61.635 55.000 5.73 5.73 41.93 6.09
692 768 1.060937 GGATCAACACATGACGCGC 59.939 57.895 5.73 0.00 41.93 6.86
693 769 1.061131 GAAGGATCAACACATGACGCG 59.939 52.381 3.53 3.53 41.93 6.01
694 770 1.398390 GGAAGGATCAACACATGACGC 59.602 52.381 0.00 0.00 41.93 5.19
695 771 2.977914 AGGAAGGATCAACACATGACG 58.022 47.619 0.00 0.00 41.93 4.35
698 774 7.770433 TGAAACTATAGGAAGGATCAACACATG 59.230 37.037 4.43 0.00 0.00 3.21
699 775 7.770897 GTGAAACTATAGGAAGGATCAACACAT 59.229 37.037 4.43 0.00 0.00 3.21
702 778 6.070995 ACGTGAAACTATAGGAAGGATCAACA 60.071 38.462 4.43 0.00 31.75 3.33
703 779 6.255887 CACGTGAAACTATAGGAAGGATCAAC 59.744 42.308 10.90 0.00 31.75 3.18
704 780 6.338146 CACGTGAAACTATAGGAAGGATCAA 58.662 40.000 10.90 0.00 31.75 2.57
705 781 5.681437 GCACGTGAAACTATAGGAAGGATCA 60.681 44.000 22.23 0.00 31.75 2.92
706 782 4.745620 GCACGTGAAACTATAGGAAGGATC 59.254 45.833 22.23 0.00 31.75 3.36
707 783 4.406003 AGCACGTGAAACTATAGGAAGGAT 59.594 41.667 22.23 0.00 31.75 3.24
708 784 3.767673 AGCACGTGAAACTATAGGAAGGA 59.232 43.478 22.23 0.00 31.75 3.36
709 785 4.113354 GAGCACGTGAAACTATAGGAAGG 58.887 47.826 22.23 0.00 31.75 3.46
710 786 4.113354 GGAGCACGTGAAACTATAGGAAG 58.887 47.826 22.23 0.00 31.75 3.46
711 787 3.767673 AGGAGCACGTGAAACTATAGGAA 59.232 43.478 22.23 0.00 31.75 3.36
712 788 3.362706 AGGAGCACGTGAAACTATAGGA 58.637 45.455 22.23 0.00 31.75 2.94
713 789 3.491104 GGAGGAGCACGTGAAACTATAGG 60.491 52.174 22.23 0.00 31.75 2.57
714 790 3.381908 AGGAGGAGCACGTGAAACTATAG 59.618 47.826 22.23 0.00 31.75 1.31
715 791 3.362706 AGGAGGAGCACGTGAAACTATA 58.637 45.455 22.23 0.00 31.75 1.31
716 792 2.166664 GAGGAGGAGCACGTGAAACTAT 59.833 50.000 22.23 5.34 31.75 2.12
717 793 1.544691 GAGGAGGAGCACGTGAAACTA 59.455 52.381 22.23 0.00 31.75 2.24
718 794 0.318762 GAGGAGGAGCACGTGAAACT 59.681 55.000 22.23 12.93 31.75 2.66
719 795 0.033504 TGAGGAGGAGCACGTGAAAC 59.966 55.000 22.23 7.75 0.00 2.78
720 796 0.976641 ATGAGGAGGAGCACGTGAAA 59.023 50.000 22.23 0.00 0.00 2.69
721 797 0.532573 GATGAGGAGGAGCACGTGAA 59.467 55.000 22.23 0.00 0.00 3.18
722 798 1.323271 GGATGAGGAGGAGCACGTGA 61.323 60.000 22.23 0.00 0.00 4.35
723 799 1.142748 GGATGAGGAGGAGCACGTG 59.857 63.158 12.28 12.28 0.00 4.49
724 800 1.000993 AGGATGAGGAGGAGCACGT 59.999 57.895 0.00 0.00 0.00 4.49
725 801 0.754957 AGAGGATGAGGAGGAGCACG 60.755 60.000 0.00 0.00 0.00 5.34
726 802 1.039856 GAGAGGATGAGGAGGAGCAC 58.960 60.000 0.00 0.00 0.00 4.40
727 803 0.633378 TGAGAGGATGAGGAGGAGCA 59.367 55.000 0.00 0.00 0.00 4.26
728 804 1.039856 GTGAGAGGATGAGGAGGAGC 58.960 60.000 0.00 0.00 0.00 4.70
729 805 2.091939 TGAGTGAGAGGATGAGGAGGAG 60.092 54.545 0.00 0.00 0.00 3.69
730 806 1.925959 TGAGTGAGAGGATGAGGAGGA 59.074 52.381 0.00 0.00 0.00 3.71
731 807 2.450867 TGAGTGAGAGGATGAGGAGG 57.549 55.000 0.00 0.00 0.00 4.30
732 808 4.650588 AGAAATGAGTGAGAGGATGAGGAG 59.349 45.833 0.00 0.00 0.00 3.69
733 809 4.618635 AGAAATGAGTGAGAGGATGAGGA 58.381 43.478 0.00 0.00 0.00 3.71
734 810 5.117584 CAAGAAATGAGTGAGAGGATGAGG 58.882 45.833 0.00 0.00 0.00 3.86
735 811 4.571580 GCAAGAAATGAGTGAGAGGATGAG 59.428 45.833 0.00 0.00 0.00 2.90
736 812 4.511527 GCAAGAAATGAGTGAGAGGATGA 58.488 43.478 0.00 0.00 0.00 2.92
737 813 3.626670 GGCAAGAAATGAGTGAGAGGATG 59.373 47.826 0.00 0.00 0.00 3.51
750 826 2.025605 TGCTCCAGAGATGGCAAGAAAT 60.026 45.455 0.00 0.00 0.00 2.17
834 926 9.676195 GCATATTAAACAAACAATTGCCTTTTT 57.324 25.926 5.05 3.42 40.34 1.94
865 957 3.056749 AGGATGAACGTACTCCAACTGTC 60.057 47.826 12.04 0.00 0.00 3.51
941 1033 2.464459 GGCGTAGTCCATGTGCAGC 61.464 63.158 0.00 0.00 0.00 5.25
970 1062 3.605916 TGCGCGCAAAAACAAATATACTG 59.394 39.130 34.66 0.00 0.00 2.74
1128 1443 1.009449 CGGCGTCTTCTCGATCTCC 60.009 63.158 0.00 0.00 0.00 3.71
1164 1480 2.418910 CGGCTCCGACTCCATGTCT 61.419 63.158 1.35 0.00 43.25 3.41
1499 1838 4.015764 TGAATTGATTTTCGATCAGGCCA 58.984 39.130 5.01 0.00 0.00 5.36
1520 1860 2.629617 GGGATGCTCAATTGGGGTAATG 59.370 50.000 7.59 0.00 0.00 1.90
1533 1874 1.338020 CTAAAAATGGCGGGGATGCTC 59.662 52.381 0.00 0.00 34.52 4.26
1573 1926 6.310467 CAGAGCACGAATTAGTTACTAGCAAA 59.690 38.462 0.00 0.00 0.00 3.68
1580 1933 3.554670 CGCAGAGCACGAATTAGTTAC 57.445 47.619 0.00 0.00 0.00 2.50
1780 2141 4.994282 TGTACTGTACCTTTCTGAGAGGA 58.006 43.478 20.08 2.29 37.72 3.71
1806 2172 3.028850 ACAGGAGCATGGAAATGGAATG 58.971 45.455 0.00 0.00 0.00 2.67
1828 2199 3.832237 AAGTGCGGCTCACCACAGG 62.832 63.158 3.59 0.00 46.81 4.00
1831 2202 4.030452 GCAAGTGCGGCTCACCAC 62.030 66.667 3.59 0.00 46.81 4.16
1847 2243 2.307049 CAACGACCACGAAAAATCAGC 58.693 47.619 0.00 0.00 42.66 4.26
1999 2397 2.664568 GTCGTCGATGTTGAAATTCCGA 59.335 45.455 4.21 0.00 0.00 4.55
2030 2428 0.392461 TTGTAGCAAGCGATGACCCC 60.392 55.000 0.00 0.00 0.00 4.95
2031 2429 1.331756 CATTGTAGCAAGCGATGACCC 59.668 52.381 0.00 0.00 31.13 4.46
2055 2458 1.918262 TGTAGACTAGGGAGGTTCCGA 59.082 52.381 0.00 0.00 37.43 4.55
2093 2499 7.137490 TCACTTGCTTGTGAATATCTTTCTG 57.863 36.000 9.32 0.00 43.08 3.02
2105 2511 4.905866 CGACTACAAAATCACTTGCTTGTG 59.094 41.667 3.77 3.77 39.15 3.33
2110 2516 3.536158 TGCGACTACAAAATCACTTGC 57.464 42.857 0.00 0.00 0.00 4.01
2393 2808 6.230472 TGAAAGAAATTCTGAATCAGTCCGA 58.770 36.000 10.36 0.00 38.92 4.55
2443 2862 2.005370 AGTACTTGAGGAACCCACGA 57.995 50.000 0.00 0.00 0.00 4.35
2524 2944 1.134438 AGGTGGGGAACTGGAGGAAC 61.134 60.000 0.00 0.00 0.00 3.62
2553 2973 1.197036 GTTACGTTTGCTTCCAGGCTC 59.803 52.381 0.00 0.00 0.00 4.70
2593 3028 3.855689 AAATTGTTCATTCAGCGAGGG 57.144 42.857 0.00 0.00 0.00 4.30
2595 3030 5.916883 ACTTGAAAATTGTTCATTCAGCGAG 59.083 36.000 0.00 0.00 34.80 5.03
2596 3031 5.830912 ACTTGAAAATTGTTCATTCAGCGA 58.169 33.333 0.00 0.00 34.80 4.93
2597 3032 6.515043 AACTTGAAAATTGTTCATTCAGCG 57.485 33.333 0.00 0.00 34.80 5.18
2637 3080 9.042008 GGAGCTAAAACGATGAAGTATTTGATA 57.958 33.333 0.00 0.00 0.00 2.15
2640 3083 7.308782 AGGAGCTAAAACGATGAAGTATTTG 57.691 36.000 0.00 0.00 0.00 2.32
2642 3085 5.749109 CGAGGAGCTAAAACGATGAAGTATT 59.251 40.000 0.00 0.00 0.00 1.89
2644 3087 4.397103 TCGAGGAGCTAAAACGATGAAGTA 59.603 41.667 0.00 0.00 0.00 2.24
2646 3089 3.770666 TCGAGGAGCTAAAACGATGAAG 58.229 45.455 0.00 0.00 0.00 3.02
2651 3094 2.494471 TGGAATCGAGGAGCTAAAACGA 59.506 45.455 7.10 7.10 37.39 3.85
2659 3102 0.809241 CTGCAGTGGAATCGAGGAGC 60.809 60.000 5.25 0.00 0.00 4.70
2660 3103 0.820226 TCTGCAGTGGAATCGAGGAG 59.180 55.000 14.67 0.00 0.00 3.69
2669 3112 3.498397 GTCGAAGAAAAATCTGCAGTGGA 59.502 43.478 14.67 0.00 39.69 4.02
2670 3113 3.499918 AGTCGAAGAAAAATCTGCAGTGG 59.500 43.478 14.67 0.00 39.69 4.00
2671 3114 4.739046 AGTCGAAGAAAAATCTGCAGTG 57.261 40.909 14.67 0.00 39.69 3.66
2672 3115 4.816385 TGAAGTCGAAGAAAAATCTGCAGT 59.184 37.500 14.67 0.00 39.69 4.40
2838 3286 1.677966 CAGGCCTGTCATGCTGCTT 60.678 57.895 25.53 0.00 0.00 3.91
2907 3384 0.827368 GGAGGGGACAGTCTAAGCTG 59.173 60.000 0.00 0.00 41.92 4.24
2929 3410 3.419858 AGGAAGGCCTGGACATGG 58.580 61.111 5.69 0.00 44.90 3.66
3065 3546 7.124347 AGAAACGCGAACAAATCTTGTAATA 57.876 32.000 15.93 0.00 44.59 0.98
3067 3548 5.412526 AGAAACGCGAACAAATCTTGTAA 57.587 34.783 15.93 0.00 44.59 2.41
3104 3585 2.097954 TCAGCATGGTTCATTTCATCGC 59.902 45.455 0.00 0.00 36.16 4.58
3105 3586 3.688272 GTCAGCATGGTTCATTTCATCG 58.312 45.455 0.00 0.00 36.16 3.84
3138 3635 0.535335 TCCTCATCCGCCACTACAAC 59.465 55.000 0.00 0.00 0.00 3.32
3365 3864 1.372582 CCATGTTCATGTCGGTGAGG 58.627 55.000 11.13 0.00 0.00 3.86
3386 3885 1.722011 CCACCTTGCCGTAGTTGTAG 58.278 55.000 0.00 0.00 0.00 2.74
3497 3996 4.147449 TGCATGAGGTCGGCGGAG 62.147 66.667 7.21 0.00 0.00 4.63
3810 4309 4.772687 GAACCTCCCGAACCGCCC 62.773 72.222 0.00 0.00 0.00 6.13
3924 4423 1.592223 CCTTCTTCCCGTCGAGCTT 59.408 57.895 0.00 0.00 0.00 3.74
3925 4424 3.007973 GCCTTCTTCCCGTCGAGCT 62.008 63.158 0.00 0.00 0.00 4.09
4076 4575 0.179137 TGACGCTGTGTGGATCGATC 60.179 55.000 17.36 17.36 0.00 3.69
4077 4576 0.179127 CTGACGCTGTGTGGATCGAT 60.179 55.000 0.00 0.00 0.00 3.59
4078 4577 1.212751 CTGACGCTGTGTGGATCGA 59.787 57.895 0.00 0.00 0.00 3.59
4079 4578 0.179127 ATCTGACGCTGTGTGGATCG 60.179 55.000 0.00 0.00 0.00 3.69
4090 4589 1.269621 ACCGCCTATGTAATCTGACGC 60.270 52.381 0.00 0.00 0.00 5.19
4141 4643 5.633655 ACGTAATGGTATGATAACCCCAA 57.366 39.130 0.00 0.00 38.90 4.12
4142 4644 5.633655 AACGTAATGGTATGATAACCCCA 57.366 39.130 0.00 0.00 38.90 4.96
4143 4645 6.523840 TGTAACGTAATGGTATGATAACCCC 58.476 40.000 0.00 0.00 38.90 4.95
4144 4646 9.362539 CTATGTAACGTAATGGTATGATAACCC 57.637 37.037 0.00 0.00 38.90 4.11
4149 4651 9.074576 TCACTCTATGTAACGTAATGGTATGAT 57.925 33.333 0.00 0.00 0.00 2.45
4150 4652 8.454570 TCACTCTATGTAACGTAATGGTATGA 57.545 34.615 0.00 0.00 0.00 2.15
4151 4653 9.129209 CATCACTCTATGTAACGTAATGGTATG 57.871 37.037 0.00 0.00 0.00 2.39
4152 4654 7.813148 GCATCACTCTATGTAACGTAATGGTAT 59.187 37.037 0.00 0.00 0.00 2.73
4153 4655 7.143340 GCATCACTCTATGTAACGTAATGGTA 58.857 38.462 0.00 0.00 0.00 3.25
4154 4656 5.983720 GCATCACTCTATGTAACGTAATGGT 59.016 40.000 0.00 0.00 0.00 3.55
4384 4886 7.604545 AGGAGCAAATGTACTCTTCTAAAAGAC 59.395 37.037 0.00 0.00 36.59 3.01
4443 4951 7.535489 AATGCAAGTTATACTCCGTTAAGTC 57.465 36.000 0.00 0.00 0.00 3.01
4537 5049 0.235665 GCCGAAGTGTGATGTGTGTG 59.764 55.000 0.00 0.00 0.00 3.82
4538 5050 0.884704 GGCCGAAGTGTGATGTGTGT 60.885 55.000 0.00 0.00 0.00 3.72
4584 5130 2.289444 TGATTCGAAACTCCCACCACTC 60.289 50.000 0.00 0.00 0.00 3.51
4585 5131 1.697432 TGATTCGAAACTCCCACCACT 59.303 47.619 0.00 0.00 0.00 4.00
4586 5132 2.178912 TGATTCGAAACTCCCACCAC 57.821 50.000 0.00 0.00 0.00 4.16
4587 5133 2.355716 GGATGATTCGAAACTCCCACCA 60.356 50.000 0.00 0.00 0.00 4.17
4588 5134 2.289565 GGATGATTCGAAACTCCCACC 58.710 52.381 0.00 0.00 0.00 4.61
4589 5135 2.289565 GGGATGATTCGAAACTCCCAC 58.710 52.381 26.25 9.78 44.23 4.61
4590 5136 1.134521 CGGGATGATTCGAAACTCCCA 60.135 52.381 28.41 13.64 44.93 4.37
4591 5137 1.583054 CGGGATGATTCGAAACTCCC 58.417 55.000 23.42 23.42 41.86 4.30
4592 5138 1.583054 CCGGGATGATTCGAAACTCC 58.417 55.000 0.00 8.62 0.00 3.85
4593 5139 1.583054 CCCGGGATGATTCGAAACTC 58.417 55.000 18.48 0.00 0.00 3.01
4594 5140 0.180406 CCCCGGGATGATTCGAAACT 59.820 55.000 26.32 0.00 0.00 2.66
4595 5141 0.107361 ACCCCGGGATGATTCGAAAC 60.107 55.000 26.32 0.00 0.00 2.78
4596 5142 1.139455 GTACCCCGGGATGATTCGAAA 59.861 52.381 26.32 0.00 0.00 3.46
4597 5143 0.754472 GTACCCCGGGATGATTCGAA 59.246 55.000 26.32 0.00 0.00 3.71
4598 5144 1.117142 GGTACCCCGGGATGATTCGA 61.117 60.000 26.32 0.00 0.00 3.71
4599 5145 1.119574 AGGTACCCCGGGATGATTCG 61.120 60.000 26.32 5.39 35.12 3.34
4600 5146 0.396811 CAGGTACCCCGGGATGATTC 59.603 60.000 26.32 6.22 35.12 2.52
4601 5147 2.539983 CAGGTACCCCGGGATGATT 58.460 57.895 26.32 0.60 35.12 2.57
4602 5148 4.313523 CAGGTACCCCGGGATGAT 57.686 61.111 26.32 6.94 35.12 2.45
4625 5171 3.665675 AAGTCGTGGAGCGGATGGC 62.666 63.158 0.00 0.00 41.72 4.40
4626 5172 1.519455 GAAGTCGTGGAGCGGATGG 60.519 63.158 0.00 0.00 41.72 3.51
4627 5173 1.519455 GGAAGTCGTGGAGCGGATG 60.519 63.158 0.00 0.00 41.72 3.51
4628 5174 1.668101 GAGGAAGTCGTGGAGCGGAT 61.668 60.000 0.00 0.00 41.72 4.18
4629 5175 2.282958 AGGAAGTCGTGGAGCGGA 60.283 61.111 0.00 0.00 41.72 5.54
4630 5176 2.182030 GAGGAAGTCGTGGAGCGG 59.818 66.667 0.00 0.00 41.72 5.52
4631 5177 2.182030 GGAGGAAGTCGTGGAGCG 59.818 66.667 0.00 0.00 43.01 5.03
4632 5178 1.216710 CTGGAGGAAGTCGTGGAGC 59.783 63.158 0.00 0.00 0.00 4.70
4633 5179 0.244994 CACTGGAGGAAGTCGTGGAG 59.755 60.000 0.00 0.00 0.00 3.86
4634 5180 1.185618 CCACTGGAGGAAGTCGTGGA 61.186 60.000 0.00 0.00 46.11 4.02
4635 5181 1.293498 CCACTGGAGGAAGTCGTGG 59.707 63.158 0.00 0.00 39.14 4.94
4636 5182 1.374758 GCCACTGGAGGAAGTCGTG 60.375 63.158 0.00 0.00 0.00 4.35
4637 5183 2.584391 GGCCACTGGAGGAAGTCGT 61.584 63.158 0.00 0.00 0.00 4.34
4638 5184 2.266055 GGCCACTGGAGGAAGTCG 59.734 66.667 0.00 0.00 0.00 4.18
4639 5185 2.266055 CGGCCACTGGAGGAAGTC 59.734 66.667 2.24 0.00 0.00 3.01
4640 5186 3.322466 CCGGCCACTGGAGGAAGT 61.322 66.667 2.24 0.00 0.00 3.01
4641 5187 3.003173 TCCGGCCACTGGAGGAAG 61.003 66.667 2.24 0.00 30.50 3.46
4646 5192 3.924013 ATGGTCTCCGGCCACTGGA 62.924 63.158 2.24 0.00 39.03 3.86
4647 5193 3.402681 ATGGTCTCCGGCCACTGG 61.403 66.667 2.24 0.00 39.03 4.00
4648 5194 2.124983 CATGGTCTCCGGCCACTG 60.125 66.667 2.24 0.00 39.03 3.66
4649 5195 0.907704 TAACATGGTCTCCGGCCACT 60.908 55.000 2.24 0.00 39.03 4.00
4650 5196 0.180406 ATAACATGGTCTCCGGCCAC 59.820 55.000 2.24 0.00 39.03 5.01
4651 5197 0.180171 CATAACATGGTCTCCGGCCA 59.820 55.000 2.24 0.00 40.68 5.36
4652 5198 0.535102 CCATAACATGGTCTCCGGCC 60.535 60.000 0.00 0.00 45.54 6.13
4653 5199 3.006672 CCATAACATGGTCTCCGGC 57.993 57.895 0.00 0.00 45.54 6.13
4662 5208 0.250467 CCCGGAGCTCCCATAACATG 60.250 60.000 27.20 10.02 34.14 3.21
4663 5209 0.694444 ACCCGGAGCTCCCATAACAT 60.694 55.000 27.20 2.87 34.14 2.71
4664 5210 1.306654 ACCCGGAGCTCCCATAACA 60.307 57.895 27.20 0.00 34.14 2.41
4665 5211 1.146263 CACCCGGAGCTCCCATAAC 59.854 63.158 27.20 0.86 34.14 1.89
4666 5212 2.070039 CCACCCGGAGCTCCCATAA 61.070 63.158 27.20 0.00 34.14 1.90
4667 5213 2.445845 CCACCCGGAGCTCCCATA 60.446 66.667 27.20 0.00 34.14 2.74
4668 5214 4.414956 TCCACCCGGAGCTCCCAT 62.415 66.667 27.20 9.75 35.91 4.00
4676 5222 3.003173 CCTTGAGCTCCACCCGGA 61.003 66.667 12.15 0.00 39.79 5.14
4677 5223 3.003173 TCCTTGAGCTCCACCCGG 61.003 66.667 12.15 0.00 0.00 5.73
4678 5224 2.266055 GTCCTTGAGCTCCACCCG 59.734 66.667 12.15 0.00 0.00 5.28
4679 5225 2.266055 CGTCCTTGAGCTCCACCC 59.734 66.667 12.15 0.00 0.00 4.61
4680 5226 1.079750 GTCGTCCTTGAGCTCCACC 60.080 63.158 12.15 0.00 0.00 4.61
4681 5227 1.079750 GGTCGTCCTTGAGCTCCAC 60.080 63.158 12.15 1.74 33.66 4.02
4682 5228 1.228894 AGGTCGTCCTTGAGCTCCA 60.229 57.895 12.15 0.00 42.77 3.86
4683 5229 1.216710 CAGGTCGTCCTTGAGCTCC 59.783 63.158 12.15 0.00 44.42 4.70
4684 5230 0.109039 GTCAGGTCGTCCTTGAGCTC 60.109 60.000 6.82 6.82 44.42 4.09
4686 5232 1.079750 GGTCAGGTCGTCCTTGAGC 60.080 63.158 0.00 6.54 43.07 4.26
4687 5233 1.213013 CGGTCAGGTCGTCCTTGAG 59.787 63.158 0.00 0.00 43.07 3.02
4688 5234 1.529948 ACGGTCAGGTCGTCCTTGA 60.530 57.895 0.00 0.00 43.07 3.02
4689 5235 1.372997 CACGGTCAGGTCGTCCTTG 60.373 63.158 0.00 0.00 43.07 3.61
4690 5236 3.048602 CACGGTCAGGTCGTCCTT 58.951 61.111 0.00 0.00 43.07 3.36
4691 5237 3.681835 GCACGGTCAGGTCGTCCT 61.682 66.667 0.00 0.00 46.37 3.85
4692 5238 3.681835 AGCACGGTCAGGTCGTCC 61.682 66.667 0.00 0.00 38.94 4.79
4693 5239 2.430921 CAGCACGGTCAGGTCGTC 60.431 66.667 0.00 0.00 38.94 4.20
4694 5240 3.991051 CCAGCACGGTCAGGTCGT 61.991 66.667 0.00 0.00 41.93 4.34
4695 5241 3.633094 CTCCAGCACGGTCAGGTCG 62.633 68.421 0.00 0.00 35.57 4.79
4696 5242 1.816863 TTCTCCAGCACGGTCAGGTC 61.817 60.000 0.00 0.00 35.57 3.85
4697 5243 1.837051 TTCTCCAGCACGGTCAGGT 60.837 57.895 0.00 0.00 35.57 4.00
4698 5244 1.374758 GTTCTCCAGCACGGTCAGG 60.375 63.158 0.00 0.00 35.57 3.86
4699 5245 1.374758 GGTTCTCCAGCACGGTCAG 60.375 63.158 0.00 0.00 35.57 3.51
4700 5246 2.741092 GGTTCTCCAGCACGGTCA 59.259 61.111 0.00 0.00 35.57 4.02
4701 5247 2.047179 GGGTTCTCCAGCACGGTC 60.047 66.667 0.00 0.00 35.57 4.79
4702 5248 3.637273 GGGGTTCTCCAGCACGGT 61.637 66.667 0.00 0.00 37.22 4.83
4703 5249 4.760047 CGGGGTTCTCCAGCACGG 62.760 72.222 0.00 0.00 46.54 4.94
4713 5259 4.778143 ATGGAGTGCGCGGGGTTC 62.778 66.667 8.83 0.00 0.00 3.62
4714 5260 4.344865 AATGGAGTGCGCGGGGTT 62.345 61.111 8.83 0.00 0.00 4.11
4721 5267 4.170062 CTGCGGCAATGGAGTGCG 62.170 66.667 3.44 0.00 45.91 5.34
4722 5268 4.487412 GCTGCGGCAATGGAGTGC 62.487 66.667 14.08 0.00 44.14 4.40
4723 5269 3.057548 TGCTGCGGCAATGGAGTG 61.058 61.111 20.23 0.00 46.36 3.51
4735 5281 3.376918 GTCCCTGGCCTTTGCTGC 61.377 66.667 3.32 0.00 37.74 5.25
4736 5282 1.530013 CTTGTCCCTGGCCTTTGCTG 61.530 60.000 3.32 0.00 37.74 4.41
4737 5283 1.228675 CTTGTCCCTGGCCTTTGCT 60.229 57.895 3.32 0.00 37.74 3.91
4738 5284 0.613012 ATCTTGTCCCTGGCCTTTGC 60.613 55.000 3.32 0.00 0.00 3.68
4739 5285 1.272092 TGATCTTGTCCCTGGCCTTTG 60.272 52.381 3.32 0.00 0.00 2.77
4740 5286 1.075601 TGATCTTGTCCCTGGCCTTT 58.924 50.000 3.32 0.00 0.00 3.11
4741 5287 0.329596 GTGATCTTGTCCCTGGCCTT 59.670 55.000 3.32 0.00 0.00 4.35
4742 5288 1.903877 CGTGATCTTGTCCCTGGCCT 61.904 60.000 3.32 0.00 0.00 5.19
4743 5289 1.450312 CGTGATCTTGTCCCTGGCC 60.450 63.158 0.00 0.00 0.00 5.36
4744 5290 2.109126 GCGTGATCTTGTCCCTGGC 61.109 63.158 0.00 0.00 0.00 4.85
4745 5291 1.021390 GTGCGTGATCTTGTCCCTGG 61.021 60.000 0.00 0.00 0.00 4.45
4746 5292 0.320683 TGTGCGTGATCTTGTCCCTG 60.321 55.000 0.00 0.00 0.00 4.45
4747 5293 0.396435 TTGTGCGTGATCTTGTCCCT 59.604 50.000 0.00 0.00 0.00 4.20
4748 5294 1.398390 GATTGTGCGTGATCTTGTCCC 59.602 52.381 0.00 0.00 0.00 4.46
4749 5295 2.349886 GAGATTGTGCGTGATCTTGTCC 59.650 50.000 0.00 0.00 32.96 4.02
4750 5296 2.349886 GGAGATTGTGCGTGATCTTGTC 59.650 50.000 0.00 0.00 32.96 3.18
4751 5297 2.027745 AGGAGATTGTGCGTGATCTTGT 60.028 45.455 0.00 0.00 32.96 3.16
4752 5298 2.350804 CAGGAGATTGTGCGTGATCTTG 59.649 50.000 0.00 0.00 32.96 3.02
4753 5299 2.625737 CAGGAGATTGTGCGTGATCTT 58.374 47.619 0.00 0.00 32.96 2.40
4754 5300 1.741732 GCAGGAGATTGTGCGTGATCT 60.742 52.381 0.00 0.00 35.41 2.75
4755 5301 0.654683 GCAGGAGATTGTGCGTGATC 59.345 55.000 0.00 0.00 0.00 2.92
4756 5302 0.036105 TGCAGGAGATTGTGCGTGAT 60.036 50.000 0.00 0.00 42.96 3.06
4757 5303 0.036105 ATGCAGGAGATTGTGCGTGA 60.036 50.000 0.00 0.00 42.96 4.35
4758 5304 0.376152 GATGCAGGAGATTGTGCGTG 59.624 55.000 0.00 0.00 42.96 5.34
4759 5305 0.036105 TGATGCAGGAGATTGTGCGT 60.036 50.000 0.00 0.00 42.96 5.24
4760 5306 1.002792 CATGATGCAGGAGATTGTGCG 60.003 52.381 0.00 0.00 42.96 5.34
4761 5307 1.337071 CCATGATGCAGGAGATTGTGC 59.663 52.381 0.00 0.00 40.29 4.57
4762 5308 1.337071 GCCATGATGCAGGAGATTGTG 59.663 52.381 0.00 0.00 0.00 3.33
4763 5309 1.688772 GCCATGATGCAGGAGATTGT 58.311 50.000 0.00 0.00 0.00 2.71
4764 5310 0.959553 GGCCATGATGCAGGAGATTG 59.040 55.000 0.00 0.00 0.00 2.67
4765 5311 0.851469 AGGCCATGATGCAGGAGATT 59.149 50.000 5.01 0.00 0.00 2.40
4766 5312 0.851469 AAGGCCATGATGCAGGAGAT 59.149 50.000 5.01 0.00 0.00 2.75
4767 5313 0.106868 CAAGGCCATGATGCAGGAGA 60.107 55.000 5.01 0.00 0.00 3.71
4768 5314 1.735376 GCAAGGCCATGATGCAGGAG 61.735 60.000 13.26 0.00 39.81 3.69
4769 5315 1.755395 GCAAGGCCATGATGCAGGA 60.755 57.895 13.26 0.00 39.81 3.86
4770 5316 2.812499 GCAAGGCCATGATGCAGG 59.188 61.111 13.26 0.00 39.81 4.85
4781 5327 3.019003 TAGTCGGAGCTGGCAAGGC 62.019 63.158 0.00 0.00 0.00 4.35
4782 5328 1.153549 GTAGTCGGAGCTGGCAAGG 60.154 63.158 0.00 0.00 0.00 3.61
4783 5329 0.037326 TTGTAGTCGGAGCTGGCAAG 60.037 55.000 0.00 0.00 0.00 4.01
4784 5330 0.037326 CTTGTAGTCGGAGCTGGCAA 60.037 55.000 0.00 0.00 0.00 4.52
4785 5331 0.898326 TCTTGTAGTCGGAGCTGGCA 60.898 55.000 0.00 0.00 0.00 4.92
4786 5332 0.179124 CTCTTGTAGTCGGAGCTGGC 60.179 60.000 0.00 0.00 0.00 4.85
4787 5333 0.457851 CCTCTTGTAGTCGGAGCTGG 59.542 60.000 0.00 0.00 0.00 4.85
4788 5334 0.179124 GCCTCTTGTAGTCGGAGCTG 60.179 60.000 0.00 0.00 0.00 4.24
4789 5335 0.323908 AGCCTCTTGTAGTCGGAGCT 60.324 55.000 0.00 0.00 0.00 4.09
4790 5336 0.179124 CAGCCTCTTGTAGTCGGAGC 60.179 60.000 0.00 0.00 0.00 4.70
4791 5337 0.179124 GCAGCCTCTTGTAGTCGGAG 60.179 60.000 0.00 0.00 0.00 4.63
4792 5338 0.898326 TGCAGCCTCTTGTAGTCGGA 60.898 55.000 0.00 0.00 0.00 4.55
4793 5339 0.459237 CTGCAGCCTCTTGTAGTCGG 60.459 60.000 0.00 0.00 0.00 4.79
4794 5340 0.459237 CCTGCAGCCTCTTGTAGTCG 60.459 60.000 8.66 0.00 0.00 4.18
4795 5341 0.107945 CCCTGCAGCCTCTTGTAGTC 60.108 60.000 8.66 0.00 0.00 2.59
4796 5342 0.838122 ACCCTGCAGCCTCTTGTAGT 60.838 55.000 8.66 0.00 0.00 2.73
4797 5343 0.392193 CACCCTGCAGCCTCTTGTAG 60.392 60.000 8.66 0.00 0.00 2.74
4798 5344 1.127567 ACACCCTGCAGCCTCTTGTA 61.128 55.000 8.66 0.00 0.00 2.41
4799 5345 1.999634 AACACCCTGCAGCCTCTTGT 62.000 55.000 8.66 3.19 0.00 3.16
4800 5346 1.228367 AACACCCTGCAGCCTCTTG 60.228 57.895 8.66 2.54 0.00 3.02
4801 5347 1.228367 CAACACCCTGCAGCCTCTT 60.228 57.895 8.66 0.00 0.00 2.85
4802 5348 2.433446 CAACACCCTGCAGCCTCT 59.567 61.111 8.66 0.00 0.00 3.69
4803 5349 2.674380 CCAACACCCTGCAGCCTC 60.674 66.667 8.66 0.00 0.00 4.70
4804 5350 4.982701 GCCAACACCCTGCAGCCT 62.983 66.667 8.66 0.00 0.00 4.58
4806 5352 3.677648 CTGCCAACACCCTGCAGC 61.678 66.667 8.66 0.00 45.09 5.25
4808 5354 3.496309 CTCCTGCCAACACCCTGCA 62.496 63.158 0.00 0.00 0.00 4.41
4809 5355 2.490270 ATCTCCTGCCAACACCCTGC 62.490 60.000 0.00 0.00 0.00 4.85
4810 5356 0.393537 GATCTCCTGCCAACACCCTG 60.394 60.000 0.00 0.00 0.00 4.45
4811 5357 1.903877 CGATCTCCTGCCAACACCCT 61.904 60.000 0.00 0.00 0.00 4.34
4812 5358 1.450312 CGATCTCCTGCCAACACCC 60.450 63.158 0.00 0.00 0.00 4.61
4813 5359 0.741221 GTCGATCTCCTGCCAACACC 60.741 60.000 0.00 0.00 0.00 4.16
4814 5360 1.078759 CGTCGATCTCCTGCCAACAC 61.079 60.000 0.00 0.00 0.00 3.32
4815 5361 1.215382 CGTCGATCTCCTGCCAACA 59.785 57.895 0.00 0.00 0.00 3.33
4816 5362 0.526524 CTCGTCGATCTCCTGCCAAC 60.527 60.000 0.00 0.00 0.00 3.77
4817 5363 1.667154 CCTCGTCGATCTCCTGCCAA 61.667 60.000 0.00 0.00 0.00 4.52
4818 5364 2.121538 CCTCGTCGATCTCCTGCCA 61.122 63.158 0.00 0.00 0.00 4.92
4819 5365 2.725008 CCTCGTCGATCTCCTGCC 59.275 66.667 0.00 0.00 0.00 4.85
4820 5366 1.167155 TAGCCTCGTCGATCTCCTGC 61.167 60.000 0.00 0.00 0.00 4.85
4821 5367 0.589223 GTAGCCTCGTCGATCTCCTG 59.411 60.000 0.00 0.00 0.00 3.86
4822 5368 0.881159 CGTAGCCTCGTCGATCTCCT 60.881 60.000 0.00 0.00 0.00 3.69
4823 5369 1.570475 CGTAGCCTCGTCGATCTCC 59.430 63.158 0.00 0.00 0.00 3.71
4824 5370 1.570475 CCGTAGCCTCGTCGATCTC 59.430 63.158 0.00 0.00 0.00 2.75
4825 5371 1.892862 CCCGTAGCCTCGTCGATCT 60.893 63.158 0.00 0.00 0.00 2.75
4826 5372 2.185494 ACCCGTAGCCTCGTCGATC 61.185 63.158 0.00 0.00 0.00 3.69
4827 5373 2.124403 ACCCGTAGCCTCGTCGAT 60.124 61.111 0.00 0.00 0.00 3.59
4828 5374 3.129502 CACCCGTAGCCTCGTCGA 61.130 66.667 0.00 0.00 0.00 4.20
4829 5375 2.986306 AACACCCGTAGCCTCGTCG 61.986 63.158 0.00 0.00 0.00 5.12
4830 5376 1.445582 CAACACCCGTAGCCTCGTC 60.446 63.158 0.00 0.00 0.00 4.20
4831 5377 2.654877 CAACACCCGTAGCCTCGT 59.345 61.111 0.00 0.00 0.00 4.18
4832 5378 2.125673 CCAACACCCGTAGCCTCG 60.126 66.667 0.00 0.00 0.00 4.63
4833 5379 2.436115 GCCAACACCCGTAGCCTC 60.436 66.667 0.00 0.00 0.00 4.70
4834 5380 4.388499 CGCCAACACCCGTAGCCT 62.388 66.667 0.00 0.00 0.00 4.58
4836 5382 4.692475 ACCGCCAACACCCGTAGC 62.692 66.667 0.00 0.00 0.00 3.58
4837 5383 2.740826 CACCGCCAACACCCGTAG 60.741 66.667 0.00 0.00 0.00 3.51
4838 5384 4.317444 CCACCGCCAACACCCGTA 62.317 66.667 0.00 0.00 0.00 4.02
4871 5418 0.676782 ATCTACTTGGGCGCCAACAC 60.677 55.000 30.85 11.60 38.75 3.32
4872 5419 0.676466 CATCTACTTGGGCGCCAACA 60.676 55.000 30.85 15.86 38.75 3.33
4882 5429 2.240500 GCTCGGCCGCATCTACTTG 61.241 63.158 23.51 2.59 0.00 3.16
4931 5478 2.470057 TGGCCTTTCCAGAGGTTTTT 57.530 45.000 3.32 0.00 40.72 1.94
4971 5518 9.309516 CTAACAGATTGCTTATTAACGGTTAGA 57.690 33.333 0.00 0.00 37.31 2.10
4981 5528 7.574967 CGGAAAACACCTAACAGATTGCTTATT 60.575 37.037 0.00 0.00 0.00 1.40
4998 5545 3.246936 GGATCGCCTATAACGGAAAACAC 59.753 47.826 0.00 0.00 0.00 3.32
4999 5546 3.460103 GGATCGCCTATAACGGAAAACA 58.540 45.455 0.00 0.00 0.00 2.83
5002 8793 1.682854 ACGGATCGCCTATAACGGAAA 59.317 47.619 0.00 0.00 0.00 3.13
5013 8804 0.946221 CCAGCATCTAACGGATCGCC 60.946 60.000 0.00 0.00 32.70 5.54
5020 8811 3.632604 TCTCCTCTAACCAGCATCTAACG 59.367 47.826 0.00 0.00 0.00 3.18
5021 8812 5.599999 TTCTCCTCTAACCAGCATCTAAC 57.400 43.478 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.