Multiple sequence alignment - TraesCS2B01G407500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G407500 chr2B 100.000 6779 0 0 1 6779 578595549 578602327 0.000000e+00 12519.0
1 TraesCS2B01G407500 chr2A 94.681 2181 67 18 16 2163 637975229 637977393 0.000000e+00 3339.0
2 TraesCS2B01G407500 chr2A 92.185 2124 106 22 2362 4440 637977461 637979569 0.000000e+00 2948.0
3 TraesCS2B01G407500 chr2A 95.946 1628 56 8 4441 6059 637979671 637981297 0.000000e+00 2632.0
4 TraesCS2B01G407500 chr2A 88.679 477 38 8 6310 6779 637981376 637981843 9.870000e-158 568.0
5 TraesCS2B01G407500 chr2A 94.479 163 9 0 2155 2317 578387555 578387717 1.130000e-62 252.0
6 TraesCS2B01G407500 chr2A 93.902 164 10 0 2155 2318 70985746 70985583 1.460000e-61 248.0
7 TraesCS2B01G407500 chr2D 94.771 2142 80 14 42 2158 492657278 492659412 0.000000e+00 3306.0
8 TraesCS2B01G407500 chr2D 96.294 1700 54 6 4441 6136 492661544 492663238 0.000000e+00 2782.0
9 TraesCS2B01G407500 chr2D 92.538 1769 73 29 2704 4440 492659702 492661443 0.000000e+00 2481.0
10 TraesCS2B01G407500 chr2D 90.468 556 28 4 6239 6779 492672648 492673193 0.000000e+00 710.0
11 TraesCS2B01G407500 chr2D 88.667 300 20 6 2360 2653 492659408 492659699 3.010000e-93 353.0
12 TraesCS2B01G407500 chr7B 93.413 167 10 1 2152 2318 11441307 11441142 5.250000e-61 246.0
13 TraesCS2B01G407500 chr6B 93.413 167 10 1 2152 2318 450843591 450843756 5.250000e-61 246.0
14 TraesCS2B01G407500 chr4B 91.954 174 12 2 2145 2317 551728790 551728962 6.790000e-60 243.0
15 TraesCS2B01G407500 chr4B 91.954 174 12 2 2145 2317 551783396 551783568 6.790000e-60 243.0
16 TraesCS2B01G407500 chr4D 93.293 164 10 1 2155 2318 34661688 34661526 2.440000e-59 241.0
17 TraesCS2B01G407500 chr3D 91.429 175 14 1 2143 2317 87925988 87926161 8.790000e-59 239.0
18 TraesCS2B01G407500 chr1D 91.860 172 13 1 2146 2317 338937382 338937212 8.790000e-59 239.0
19 TraesCS2B01G407500 chr5B 80.374 107 14 2 6079 6179 70910315 70910210 2.620000e-09 75.0
20 TraesCS2B01G407500 chr4A 79.798 99 17 3 2100 2197 554788089 554787993 1.220000e-07 69.4
21 TraesCS2B01G407500 chr7A 97.222 36 0 1 2371 2406 6878307 6878273 7.340000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G407500 chr2B 578595549 578602327 6778 False 12519.00 12519 100.00000 1 6779 1 chr2B.!!$F1 6778
1 TraesCS2B01G407500 chr2A 637975229 637981843 6614 False 2371.75 3339 92.87275 16 6779 4 chr2A.!!$F2 6763
2 TraesCS2B01G407500 chr2D 492657278 492663238 5960 False 2230.50 3306 93.06750 42 6136 4 chr2D.!!$F2 6094
3 TraesCS2B01G407500 chr2D 492672648 492673193 545 False 710.00 710 90.46800 6239 6779 1 chr2D.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 277 1.500474 CTCTGCCCTACCCAATCTCA 58.500 55.000 0.00 0.00 0.00 3.27 F
287 301 1.764571 TAGTCCACCACCACTGTGCC 61.765 60.000 1.29 0.00 41.35 5.01 F
550 564 1.897802 ACGAATTCGGGACCTTAGTGT 59.102 47.619 29.79 3.14 44.95 3.55 F
1469 1485 2.380064 TTTGGCCCAGTTGACAATCT 57.620 45.000 0.00 0.00 0.00 2.40 F
2314 2350 1.209504 TGCATTTAGGAACGGAGGGAG 59.790 52.381 0.00 0.00 0.00 4.30 F
2315 2351 1.209747 GCATTTAGGAACGGAGGGAGT 59.790 52.381 0.00 0.00 0.00 3.85 F
2459 2525 1.339929 GGTGGTTAAGTTTGGGCACAG 59.660 52.381 0.00 0.00 0.00 3.66 F
3565 3646 1.612726 GCTGTTGAGTGGCTCCAATCT 60.613 52.381 16.05 0.00 41.06 2.40 F
4386 4502 0.320374 TGGTGTAGCTTTGTCCTCGG 59.680 55.000 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1469 1485 2.272678 ACACGTCACACAAAATCACGA 58.727 42.857 0.00 0.0 34.55 4.35 R
2214 2250 2.551459 GTGCAGATTCACTCACTTTGCT 59.449 45.455 0.00 0.0 34.29 3.91 R
2301 2337 1.064091 GGTAGTACTCCCTCCGTTCCT 60.064 57.143 0.00 0.0 0.00 3.36 R
2888 2960 1.488393 AGGAGATTAGTTGCTGGAGGC 59.512 52.381 0.00 0.0 42.22 4.70 R
3565 3646 2.294074 GTGCCGAAATGTATTAGCCCA 58.706 47.619 0.00 0.0 0.00 5.36 R
3867 3956 3.312146 CCCCAAAATGCAACTTTGACAAC 59.688 43.478 20.53 0.0 0.00 3.32 R
4341 4457 3.866327 GCTCAGGGAACTTTAGATCGAAC 59.134 47.826 0.00 0.0 40.21 3.95 R
4611 4828 0.817654 GTACCTTTTCCATGCCCAGC 59.182 55.000 0.00 0.0 0.00 4.85 R
6197 6425 0.178891 AGGGGAGGTGCTCAAAGAGA 60.179 55.000 0.00 0.0 31.08 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.120726 ACAAACTAGCACTACAAAGTTCTTGTT 59.879 33.333 0.00 0.90 42.90 2.83
52 54 9.072375 TGTTTTTATCACCATCTGACACAATAA 57.928 29.630 0.00 0.00 0.00 1.40
189 203 2.261729 GACTTTTCCTCTCCACCCTCT 58.738 52.381 0.00 0.00 0.00 3.69
190 204 2.235155 GACTTTTCCTCTCCACCCTCTC 59.765 54.545 0.00 0.00 0.00 3.20
263 277 1.500474 CTCTGCCCTACCCAATCTCA 58.500 55.000 0.00 0.00 0.00 3.27
280 294 2.313643 TCTCACCTATAGTCCACCACCA 59.686 50.000 0.00 0.00 0.00 4.17
287 301 1.764571 TAGTCCACCACCACTGTGCC 61.765 60.000 1.29 0.00 41.35 5.01
404 418 4.398319 CTGGACACTGGTTTTTGAGGTAT 58.602 43.478 0.00 0.00 0.00 2.73
453 467 3.325425 TGACCCGAACTGATCCTGTAAAA 59.675 43.478 0.00 0.00 0.00 1.52
454 468 3.671716 ACCCGAACTGATCCTGTAAAAC 58.328 45.455 0.00 0.00 0.00 2.43
525 539 4.616143 CGTGTTCCCCATATCTCTGTATCG 60.616 50.000 0.00 0.00 0.00 2.92
550 564 1.897802 ACGAATTCGGGACCTTAGTGT 59.102 47.619 29.79 3.14 44.95 3.55
551 565 3.091545 ACGAATTCGGGACCTTAGTGTA 58.908 45.455 29.79 0.00 44.95 2.90
571 585 6.995686 AGTGTACATCTGGAAATGTGTTGTAA 59.004 34.615 0.00 0.00 40.08 2.41
606 620 2.872858 GGAGATCTGAATTTGTACGGCC 59.127 50.000 0.00 0.00 0.00 6.13
625 639 4.675146 CGGCCATAGGAGTTGAATTGTTTG 60.675 45.833 2.24 0.00 0.00 2.93
678 692 8.770010 ACTAGACAGTTTAGCAGATATTAGGT 57.230 34.615 0.00 0.00 0.00 3.08
836 852 5.724328 TGAGCAGTTGCCAGCTATATATAC 58.276 41.667 0.00 0.00 42.04 1.47
861 877 7.435488 ACGCATCTTACTTATATGTGTTCTGTC 59.565 37.037 1.63 0.00 40.45 3.51
871 887 6.734104 ATATGTGTTCTGTCTCTCTTTTGC 57.266 37.500 0.00 0.00 0.00 3.68
1443 1459 3.001414 CAGAGACCAAGATGCACTTCAG 58.999 50.000 0.00 0.00 36.61 3.02
1469 1485 2.380064 TTTGGCCCAGTTGACAATCT 57.620 45.000 0.00 0.00 0.00 2.40
1720 1737 5.295292 CCAGTATTAAGCAAGACACAGATGG 59.705 44.000 0.00 0.00 0.00 3.51
1931 1948 4.678509 AAAAGCAATATTCGAAGCGACA 57.321 36.364 3.35 0.00 34.89 4.35
1978 1995 8.807667 AACTTGCTTCATGAAACTTCTATTTG 57.192 30.769 9.88 0.00 0.00 2.32
1980 1997 6.579666 TGCTTCATGAAACTTCTATTTGCT 57.420 33.333 9.88 0.00 0.00 3.91
1981 1998 6.985117 TGCTTCATGAAACTTCTATTTGCTT 58.015 32.000 9.88 0.00 0.00 3.91
1982 1999 7.086376 TGCTTCATGAAACTTCTATTTGCTTC 58.914 34.615 9.88 0.00 0.00 3.86
1983 2000 7.086376 GCTTCATGAAACTTCTATTTGCTTCA 58.914 34.615 9.88 0.00 0.00 3.02
2017 2050 9.372189 TCATGAAGAAGATGATAGTATTCTCCA 57.628 33.333 0.00 0.00 28.96 3.86
2052 2088 8.208903 TCTTAAGTACTGTTATATTCTTGGCCC 58.791 37.037 0.00 0.00 0.00 5.80
2062 2098 7.771826 TGTTATATTCTTGGCCCTTTAGTGTAC 59.228 37.037 0.00 0.00 0.00 2.90
2164 2200 7.469537 AAAATCTACTGATATACTCCCTCCG 57.530 40.000 0.00 0.00 31.70 4.63
2165 2201 5.782677 ATCTACTGATATACTCCCTCCGT 57.217 43.478 0.00 0.00 0.00 4.69
2166 2202 5.579753 TCTACTGATATACTCCCTCCGTT 57.420 43.478 0.00 0.00 0.00 4.44
2167 2203 5.558818 TCTACTGATATACTCCCTCCGTTC 58.441 45.833 0.00 0.00 0.00 3.95
2168 2204 3.498334 ACTGATATACTCCCTCCGTTCC 58.502 50.000 0.00 0.00 0.00 3.62
2169 2205 3.140519 ACTGATATACTCCCTCCGTTCCT 59.859 47.826 0.00 0.00 0.00 3.36
2170 2206 4.353191 ACTGATATACTCCCTCCGTTCCTA 59.647 45.833 0.00 0.00 0.00 2.94
2171 2207 5.163012 ACTGATATACTCCCTCCGTTCCTAA 60.163 44.000 0.00 0.00 0.00 2.69
2172 2208 5.708544 TGATATACTCCCTCCGTTCCTAAA 58.291 41.667 0.00 0.00 0.00 1.85
2173 2209 6.320518 TGATATACTCCCTCCGTTCCTAAAT 58.679 40.000 0.00 0.00 0.00 1.40
2174 2210 7.472741 TGATATACTCCCTCCGTTCCTAAATA 58.527 38.462 0.00 0.00 0.00 1.40
2175 2211 8.120538 TGATATACTCCCTCCGTTCCTAAATAT 58.879 37.037 0.00 0.00 0.00 1.28
2176 2212 9.638176 GATATACTCCCTCCGTTCCTAAATATA 57.362 37.037 0.00 0.00 0.00 0.86
2178 2214 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2179 2215 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2180 2216 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2181 2217 5.541484 TCCCTCCGTTCCTAAATATAAGTCC 59.459 44.000 0.00 0.00 0.00 3.85
2182 2218 5.543020 CCCTCCGTTCCTAAATATAAGTCCT 59.457 44.000 0.00 0.00 0.00 3.85
2183 2219 6.042897 CCCTCCGTTCCTAAATATAAGTCCTT 59.957 42.308 0.00 0.00 0.00 3.36
2184 2220 7.419865 CCCTCCGTTCCTAAATATAAGTCCTTT 60.420 40.741 0.00 0.00 0.00 3.11
2185 2221 7.991460 CCTCCGTTCCTAAATATAAGTCCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2202 2238 7.578203 AGTCCTTTTAGAGATTCCAATAAGGG 58.422 38.462 0.00 0.00 38.24 3.95
2203 2239 7.406151 AGTCCTTTTAGAGATTCCAATAAGGGA 59.594 37.037 0.00 0.00 38.24 4.20
2204 2240 7.499563 GTCCTTTTAGAGATTCCAATAAGGGAC 59.500 40.741 0.00 0.00 36.46 4.46
2206 2242 8.714906 CCTTTTAGAGATTCCAATAAGGGACTA 58.285 37.037 0.00 0.00 38.49 2.59
2207 2243 9.549078 CTTTTAGAGATTCCAATAAGGGACTAC 57.451 37.037 0.00 0.00 38.49 2.73
2208 2244 8.618240 TTTAGAGATTCCAATAAGGGACTACA 57.382 34.615 0.00 0.00 38.49 2.74
2209 2245 8.798975 TTAGAGATTCCAATAAGGGACTACAT 57.201 34.615 0.00 0.00 38.49 2.29
2210 2246 9.892444 TTAGAGATTCCAATAAGGGACTACATA 57.108 33.333 0.00 0.00 38.49 2.29
2211 2247 8.196378 AGAGATTCCAATAAGGGACTACATAC 57.804 38.462 0.00 0.00 38.49 2.39
2212 2248 6.994221 AGATTCCAATAAGGGACTACATACG 58.006 40.000 0.00 0.00 38.49 3.06
2213 2249 6.781014 AGATTCCAATAAGGGACTACATACGA 59.219 38.462 0.00 0.00 38.49 3.43
2214 2250 6.795144 TTCCAATAAGGGACTACATACGAA 57.205 37.500 0.00 0.00 38.49 3.85
2215 2251 6.401047 TCCAATAAGGGACTACATACGAAG 57.599 41.667 0.00 0.00 38.49 3.79
2216 2252 4.989168 CCAATAAGGGACTACATACGAAGC 59.011 45.833 0.00 0.00 38.49 3.86
2217 2253 5.452776 CCAATAAGGGACTACATACGAAGCA 60.453 44.000 0.00 0.00 38.49 3.91
2218 2254 5.864418 ATAAGGGACTACATACGAAGCAA 57.136 39.130 0.00 0.00 38.49 3.91
2219 2255 4.546829 AAGGGACTACATACGAAGCAAA 57.453 40.909 0.00 0.00 38.49 3.68
2220 2256 4.124851 AGGGACTACATACGAAGCAAAG 57.875 45.455 0.00 0.00 36.02 2.77
2221 2257 3.514309 AGGGACTACATACGAAGCAAAGT 59.486 43.478 0.00 0.00 36.02 2.66
2222 2258 3.617263 GGGACTACATACGAAGCAAAGTG 59.383 47.826 0.00 0.00 0.00 3.16
2223 2259 4.491676 GGACTACATACGAAGCAAAGTGA 58.508 43.478 0.00 0.00 0.00 3.41
2224 2260 4.563184 GGACTACATACGAAGCAAAGTGAG 59.437 45.833 0.00 0.00 0.00 3.51
2225 2261 5.135508 ACTACATACGAAGCAAAGTGAGT 57.864 39.130 0.00 0.00 0.00 3.41
2226 2262 4.923871 ACTACATACGAAGCAAAGTGAGTG 59.076 41.667 0.00 0.00 0.00 3.51
2227 2263 3.990092 ACATACGAAGCAAAGTGAGTGA 58.010 40.909 0.00 0.00 0.00 3.41
2228 2264 4.377021 ACATACGAAGCAAAGTGAGTGAA 58.623 39.130 0.00 0.00 0.00 3.18
2229 2265 4.997395 ACATACGAAGCAAAGTGAGTGAAT 59.003 37.500 0.00 0.00 0.00 2.57
2230 2266 5.120830 ACATACGAAGCAAAGTGAGTGAATC 59.879 40.000 0.00 0.00 0.00 2.52
2231 2267 3.733337 ACGAAGCAAAGTGAGTGAATCT 58.267 40.909 0.00 0.00 0.00 2.40
2232 2268 3.496130 ACGAAGCAAAGTGAGTGAATCTG 59.504 43.478 0.00 0.00 0.00 2.90
2233 2269 3.666374 CGAAGCAAAGTGAGTGAATCTGC 60.666 47.826 0.00 0.00 0.00 4.26
2234 2270 2.854963 AGCAAAGTGAGTGAATCTGCA 58.145 42.857 0.00 0.00 0.00 4.41
2235 2271 2.551459 AGCAAAGTGAGTGAATCTGCAC 59.449 45.455 0.00 0.00 39.05 4.57
2248 2284 8.430801 AGTGAATCTGCACTCTAAAATATGTC 57.569 34.615 0.00 0.00 45.54 3.06
2249 2285 8.263640 AGTGAATCTGCACTCTAAAATATGTCT 58.736 33.333 0.00 0.00 45.54 3.41
2250 2286 9.534565 GTGAATCTGCACTCTAAAATATGTCTA 57.465 33.333 0.00 0.00 35.91 2.59
2279 2315 8.780846 ACATCCGTATGTAGTTTGTATTGAAA 57.219 30.769 0.00 0.00 44.66 2.69
2280 2316 9.391006 ACATCCGTATGTAGTTTGTATTGAAAT 57.609 29.630 0.00 0.00 44.66 2.17
2281 2317 9.864034 CATCCGTATGTAGTTTGTATTGAAATC 57.136 33.333 0.00 0.00 0.00 2.17
2282 2318 9.832445 ATCCGTATGTAGTTTGTATTGAAATCT 57.168 29.630 0.00 0.00 0.00 2.40
2283 2319 9.309516 TCCGTATGTAGTTTGTATTGAAATCTC 57.690 33.333 0.00 0.00 0.00 2.75
2284 2320 9.314321 CCGTATGTAGTTTGTATTGAAATCTCT 57.686 33.333 0.00 0.00 0.00 3.10
2304 2340 9.520515 AATCTCTAAAAAGACTTGCATTTAGGA 57.479 29.630 12.84 10.16 36.48 2.94
2305 2341 8.918202 TCTCTAAAAAGACTTGCATTTAGGAA 57.082 30.769 12.84 2.63 36.48 3.36
2306 2342 8.784043 TCTCTAAAAAGACTTGCATTTAGGAAC 58.216 33.333 12.84 0.00 36.48 3.62
2307 2343 7.581476 TCTAAAAAGACTTGCATTTAGGAACG 58.419 34.615 12.84 0.00 36.48 3.95
2308 2344 4.766404 AAAGACTTGCATTTAGGAACGG 57.234 40.909 0.00 0.00 0.00 4.44
2309 2345 3.695830 AGACTTGCATTTAGGAACGGA 57.304 42.857 0.00 0.00 0.00 4.69
2310 2346 3.600388 AGACTTGCATTTAGGAACGGAG 58.400 45.455 0.00 0.00 0.00 4.63
2311 2347 2.678336 GACTTGCATTTAGGAACGGAGG 59.322 50.000 0.00 0.00 0.00 4.30
2312 2348 2.017049 CTTGCATTTAGGAACGGAGGG 58.983 52.381 0.00 0.00 0.00 4.30
2313 2349 1.281419 TGCATTTAGGAACGGAGGGA 58.719 50.000 0.00 0.00 0.00 4.20
2314 2350 1.209504 TGCATTTAGGAACGGAGGGAG 59.790 52.381 0.00 0.00 0.00 4.30
2315 2351 1.209747 GCATTTAGGAACGGAGGGAGT 59.790 52.381 0.00 0.00 0.00 3.85
2316 2352 2.433239 GCATTTAGGAACGGAGGGAGTA 59.567 50.000 0.00 0.00 0.00 2.59
2360 2396 7.797038 ATAAGACGTTTTAGGTCACAAAAGT 57.203 32.000 4.75 0.00 35.60 2.66
2361 2397 8.891671 ATAAGACGTTTTAGGTCACAAAAGTA 57.108 30.769 4.75 0.00 35.60 2.24
2362 2398 6.839820 AGACGTTTTAGGTCACAAAAGTAG 57.160 37.500 0.00 0.00 35.60 2.57
2364 2400 6.257193 AGACGTTTTAGGTCACAAAAGTAGTG 59.743 38.462 0.00 0.00 35.60 2.74
2365 2401 6.108015 ACGTTTTAGGTCACAAAAGTAGTGA 58.892 36.000 0.00 0.00 43.23 3.41
2374 2440 6.993786 TCACAAAAGTAGTGACATGAAACA 57.006 33.333 0.00 0.00 40.80 2.83
2453 2519 9.418045 CTTAAACATATTGGTGGTTAAGTTTGG 57.582 33.333 13.54 0.00 46.70 3.28
2455 2521 4.221924 ACATATTGGTGGTTAAGTTTGGGC 59.778 41.667 0.00 0.00 0.00 5.36
2459 2525 1.339929 GGTGGTTAAGTTTGGGCACAG 59.660 52.381 0.00 0.00 0.00 3.66
2467 2539 6.238347 GGTTAAGTTTGGGCACAGAAATTTTG 60.238 38.462 0.00 0.00 0.00 2.44
2542 2614 7.881232 TCAACCTGTAATAGTAAAGGTGGAAAG 59.119 37.037 13.34 2.99 45.97 2.62
2577 2649 7.029563 CAGTAATTGAACAGGAACAAATAGCC 58.970 38.462 0.00 0.00 0.00 3.93
2631 2703 8.292448 AGGCAATATGATTAGCATTTTAACTCG 58.708 33.333 0.00 0.00 38.44 4.18
2697 2769 5.852738 CTCACATGAGTTACTCACTTTGG 57.147 43.478 17.92 7.58 43.63 3.28
2700 2772 5.758296 TCACATGAGTTACTCACTTTGGAAC 59.242 40.000 17.92 0.00 43.63 3.62
2710 2782 3.650139 TCACTTTGGAACGAGCTAACTC 58.350 45.455 0.00 0.00 39.75 3.01
2720 2792 2.478547 GAGCTAACTCGAGTACTGCC 57.521 55.000 20.39 12.64 32.04 4.85
2726 2798 3.963428 AACTCGAGTACTGCCAATCTT 57.037 42.857 20.39 0.00 0.00 2.40
2734 2806 5.049405 CGAGTACTGCCAATCTTGTTTTCTT 60.049 40.000 0.00 0.00 0.00 2.52
2739 2811 6.739112 ACTGCCAATCTTGTTTTCTTTAGAC 58.261 36.000 0.00 0.00 0.00 2.59
2982 3054 1.674221 GCTGGTCATGCGAAGTCTCTT 60.674 52.381 0.00 0.00 0.00 2.85
3025 3098 3.997021 CGCATTCCCTGATGGTATAACTC 59.003 47.826 0.00 0.00 34.77 3.01
3035 3108 6.925718 CCTGATGGTATAACTCTACACATGTG 59.074 42.308 24.25 24.25 0.00 3.21
3054 3127 7.064253 CACATGTGGCTAAGTAGTTTAGGTAAC 59.936 40.741 18.51 0.00 39.36 2.50
3057 3130 4.220382 TGGCTAAGTAGTTTAGGTAACGCA 59.780 41.667 0.00 0.00 41.78 5.24
3100 3173 6.055588 TGCAGCTGGTCTAATTAATACCTTC 58.944 40.000 17.12 8.42 34.23 3.46
3299 3377 3.188048 CAGAAGCTGTGTCAATTCCAGTC 59.812 47.826 0.00 0.00 0.00 3.51
3356 3434 4.781775 TTGGACTGTTCTGGGAGTTAAA 57.218 40.909 0.00 0.00 0.00 1.52
3565 3646 1.612726 GCTGTTGAGTGGCTCCAATCT 60.613 52.381 16.05 0.00 41.06 2.40
3645 3726 4.935352 TGGTAACTGCAAATGAGCTTTT 57.065 36.364 0.00 0.00 34.99 2.27
3709 3791 3.532102 ACTCCTCCACAGTTCCCTAAAT 58.468 45.455 0.00 0.00 0.00 1.40
3766 3848 3.177228 ACTCTGCCTACCAACATCTCTT 58.823 45.455 0.00 0.00 0.00 2.85
3867 3956 8.902540 TGGGTTTTATACATAGAGTGCAATAG 57.097 34.615 0.00 0.00 0.00 1.73
3888 3977 4.190772 AGTTGTCAAAGTTGCATTTTGGG 58.809 39.130 18.57 1.55 36.44 4.12
3955 4051 6.387465 TGACATACTTTCTCCGTCTGTAAAG 58.613 40.000 0.00 0.00 35.54 1.85
4051 4158 8.360390 AGTACCTTCAGAATTTTCATGAAAACC 58.640 33.333 30.64 24.39 42.32 3.27
4159 4266 7.707624 ACCATGTCAATGTCTAAAATGTCAT 57.292 32.000 0.00 0.00 31.27 3.06
4160 4267 7.765307 ACCATGTCAATGTCTAAAATGTCATC 58.235 34.615 0.00 0.00 31.27 2.92
4161 4268 7.613022 ACCATGTCAATGTCTAAAATGTCATCT 59.387 33.333 0.00 0.00 31.27 2.90
4174 4281 7.730364 AAAATGTCATCTTCTTACGAACTGT 57.270 32.000 0.00 0.00 0.00 3.55
4204 4311 8.300286 AGTATATAATGATTCCACAGACAGTCG 58.700 37.037 0.00 0.00 0.00 4.18
4224 4331 5.243954 AGTCGAATATGGATCCGATTCTGAA 59.756 40.000 25.46 14.58 33.47 3.02
4333 4441 9.260002 GCATATGATAACCCACTTTTAATTTGG 57.740 33.333 6.97 0.00 0.00 3.28
4386 4502 0.320374 TGGTGTAGCTTTGTCCTCGG 59.680 55.000 0.00 0.00 0.00 4.63
4389 4505 2.549349 GGTGTAGCTTTGTCCTCGGAAA 60.549 50.000 0.00 0.00 0.00 3.13
4484 4701 1.678101 GTCAACTTTGCTGCAGTCCTT 59.322 47.619 16.64 0.00 0.00 3.36
4493 4710 2.225467 GCTGCAGTCCTTGAACTTTCT 58.775 47.619 16.64 0.00 0.00 2.52
4827 5044 2.352421 CCGTCAGAGTATGTTCGTGGTT 60.352 50.000 4.99 0.00 0.00 3.67
5135 5352 0.038744 CAACTTGGGAGCCTGACCAT 59.961 55.000 0.00 0.00 36.48 3.55
5264 5481 4.201990 GGTGTCCTAGTATGTAACCACTCG 60.202 50.000 0.00 0.00 0.00 4.18
5414 5631 1.664151 GGTCGCCATCTTTCTTTACCG 59.336 52.381 0.00 0.00 0.00 4.02
5461 5678 2.358898 GCAACTTCTGTCCTTGCTCAAA 59.641 45.455 0.00 0.00 35.89 2.69
5481 5698 7.332678 GCTCAAATTATTTTTCTGCCATGTTCT 59.667 33.333 0.00 0.00 0.00 3.01
5512 5729 5.525012 GCTTTTTGAAGAGCTTCCATTTGTT 59.475 36.000 7.69 0.00 38.77 2.83
5517 5734 2.851195 AGAGCTTCCATTTGTTGTCGT 58.149 42.857 0.00 0.00 0.00 4.34
5582 5803 4.609947 TGCACAGTAATTGTTTGCTTCTG 58.390 39.130 0.00 0.00 38.16 3.02
5637 5858 3.007940 TCCGACATTGACAGGTGAAATCT 59.992 43.478 0.00 0.00 0.00 2.40
5640 5861 4.214119 CGACATTGACAGGTGAAATCTGTT 59.786 41.667 0.00 0.00 44.51 3.16
5688 5909 1.825105 ATGGCTGTGGGATAGATGGT 58.175 50.000 0.00 0.00 0.00 3.55
5718 5939 1.610554 GCGTCAAGGGGCAGGTAGTA 61.611 60.000 0.00 0.00 0.00 1.82
5721 5942 1.838077 GTCAAGGGGCAGGTAGTATGT 59.162 52.381 0.00 0.00 0.00 2.29
5892 6114 2.214376 TTACTTGCCAATGAGGGTGG 57.786 50.000 0.00 0.00 39.33 4.61
5906 6128 1.906824 GGTGGGAGTGACTGGTCGA 60.907 63.158 0.00 0.00 0.00 4.20
5925 6147 2.731451 CGATCAGACAATGTTGTGACGT 59.269 45.455 2.65 0.00 42.43 4.34
6015 6242 4.736759 GCATCTGCTAATGCTGCATTTTCT 60.737 41.667 30.35 11.23 46.81 2.52
6048 6276 0.668535 GGACTTTGTTGACCACAGCC 59.331 55.000 0.00 0.00 36.48 4.85
6063 6291 1.072806 ACAGCCTGTGAATTGCTCTCA 59.927 47.619 0.00 0.00 31.77 3.27
6064 6292 2.290768 ACAGCCTGTGAATTGCTCTCAT 60.291 45.455 0.00 0.00 31.77 2.90
6065 6293 2.097629 CAGCCTGTGAATTGCTCTCATG 59.902 50.000 0.00 0.00 31.77 3.07
6066 6294 2.026542 AGCCTGTGAATTGCTCTCATGA 60.027 45.455 0.00 0.00 0.00 3.07
6071 6299 3.015327 GTGAATTGCTCTCATGAAGCCT 58.985 45.455 20.15 10.03 0.00 4.58
6074 6302 2.574006 TTGCTCTCATGAAGCCTTGT 57.426 45.000 20.15 0.00 0.00 3.16
6075 6303 1.817357 TGCTCTCATGAAGCCTTGTG 58.183 50.000 20.15 2.44 0.00 3.33
6076 6304 1.093159 GCTCTCATGAAGCCTTGTGG 58.907 55.000 15.07 0.00 0.00 4.17
6077 6305 1.339438 GCTCTCATGAAGCCTTGTGGA 60.339 52.381 15.07 0.00 34.57 4.02
6081 6309 3.196469 TCTCATGAAGCCTTGTGGAGTAG 59.804 47.826 0.00 0.00 34.57 2.57
6112 6340 6.470278 AGGTGCTTAGTAAAATAAACCGAGT 58.530 36.000 0.00 0.00 0.00 4.18
6114 6342 7.118825 AGGTGCTTAGTAAAATAAACCGAGTTC 59.881 37.037 0.00 0.00 0.00 3.01
6117 6345 8.092687 TGCTTAGTAAAATAAACCGAGTTCTCT 58.907 33.333 0.00 0.00 0.00 3.10
6123 6351 9.212641 GTAAAATAAACCGAGTTCTCTTTAGGT 57.787 33.333 0.00 0.00 0.00 3.08
6136 6364 7.616150 AGTTCTCTTTAGGTGCTTATCTCTACA 59.384 37.037 0.00 0.00 0.00 2.74
6137 6365 8.417884 GTTCTCTTTAGGTGCTTATCTCTACAT 58.582 37.037 0.00 0.00 0.00 2.29
6138 6366 9.642343 TTCTCTTTAGGTGCTTATCTCTACATA 57.358 33.333 0.00 0.00 0.00 2.29
6139 6367 9.642343 TCTCTTTAGGTGCTTATCTCTACATAA 57.358 33.333 0.00 0.00 0.00 1.90
6140 6368 9.906660 CTCTTTAGGTGCTTATCTCTACATAAG 57.093 37.037 0.00 0.00 38.79 1.73
6141 6369 8.861086 TCTTTAGGTGCTTATCTCTACATAAGG 58.139 37.037 3.11 0.00 36.99 2.69
6142 6370 8.777578 TTTAGGTGCTTATCTCTACATAAGGA 57.222 34.615 3.11 0.00 36.99 3.36
6143 6371 8.958060 TTAGGTGCTTATCTCTACATAAGGAT 57.042 34.615 3.11 0.00 38.50 3.24
6144 6372 7.863901 AGGTGCTTATCTCTACATAAGGATT 57.136 36.000 3.11 0.00 38.50 3.01
6145 6373 7.675062 AGGTGCTTATCTCTACATAAGGATTG 58.325 38.462 3.11 0.00 38.50 2.67
6146 6374 6.370166 GGTGCTTATCTCTACATAAGGATTGC 59.630 42.308 3.11 0.00 38.50 3.56
6147 6375 6.370166 GTGCTTATCTCTACATAAGGATTGCC 59.630 42.308 3.11 0.00 38.50 4.52
6149 6377 7.454694 TGCTTATCTCTACATAAGGATTGCCTA 59.545 37.037 3.11 0.00 46.28 3.93
6150 6378 8.314751 GCTTATCTCTACATAAGGATTGCCTAA 58.685 37.037 3.11 0.00 46.28 2.69
6156 6384 9.442047 CTCTACATAAGGATTGCCTAATTAAGG 57.558 37.037 0.00 0.00 46.28 2.69
6157 6385 8.383175 TCTACATAAGGATTGCCTAATTAAGGG 58.617 37.037 0.00 0.00 46.28 3.95
6158 6386 6.922540 ACATAAGGATTGCCTAATTAAGGGT 58.077 36.000 0.00 0.00 46.28 4.34
6159 6387 7.004691 ACATAAGGATTGCCTAATTAAGGGTC 58.995 38.462 0.00 0.00 46.28 4.46
6160 6388 5.734031 AAGGATTGCCTAATTAAGGGTCT 57.266 39.130 0.00 0.00 46.28 3.85
6161 6389 6.841781 AAGGATTGCCTAATTAAGGGTCTA 57.158 37.500 0.00 0.00 46.28 2.59
6162 6390 7.408013 AAGGATTGCCTAATTAAGGGTCTAT 57.592 36.000 0.00 0.00 46.28 1.98
6163 6391 7.021998 AGGATTGCCTAATTAAGGGTCTATC 57.978 40.000 0.00 0.00 46.65 2.08
6164 6392 6.012421 AGGATTGCCTAATTAAGGGTCTATCC 60.012 42.308 13.75 13.75 46.65 2.59
6165 6393 6.012421 GGATTGCCTAATTAAGGGTCTATCCT 60.012 42.308 14.03 0.00 46.65 3.24
6166 6394 5.825593 TGCCTAATTAAGGGTCTATCCTG 57.174 43.478 0.00 0.00 46.65 3.86
6167 6395 5.224441 TGCCTAATTAAGGGTCTATCCTGT 58.776 41.667 0.00 0.00 46.65 4.00
6168 6396 6.387127 TGCCTAATTAAGGGTCTATCCTGTA 58.613 40.000 0.00 0.00 46.65 2.74
6169 6397 6.269307 TGCCTAATTAAGGGTCTATCCTGTAC 59.731 42.308 0.00 0.00 46.65 2.90
6170 6398 6.269307 GCCTAATTAAGGGTCTATCCTGTACA 59.731 42.308 0.00 0.00 46.65 2.90
6171 6399 7.202066 GCCTAATTAAGGGTCTATCCTGTACAA 60.202 40.741 0.00 0.00 46.65 2.41
6172 6400 8.711170 CCTAATTAAGGGTCTATCCTGTACAAA 58.289 37.037 0.00 0.00 42.32 2.83
6173 6401 9.543783 CTAATTAAGGGTCTATCCTGTACAAAC 57.456 37.037 0.00 0.00 37.20 2.93
6174 6402 6.938698 TTAAGGGTCTATCCTGTACAAACA 57.061 37.500 0.00 0.00 37.20 2.83
6175 6403 5.836024 AAGGGTCTATCCTGTACAAACAA 57.164 39.130 0.00 0.00 37.20 2.83
6176 6404 5.422214 AGGGTCTATCCTGTACAAACAAG 57.578 43.478 0.00 0.00 35.47 3.16
6177 6405 3.939592 GGGTCTATCCTGTACAAACAAGC 59.060 47.826 0.00 0.00 34.49 4.01
6178 6406 4.564821 GGGTCTATCCTGTACAAACAAGCA 60.565 45.833 0.00 0.00 34.49 3.91
6179 6407 5.186198 GGTCTATCCTGTACAAACAAGCAT 58.814 41.667 0.00 0.00 34.49 3.79
6180 6408 5.294552 GGTCTATCCTGTACAAACAAGCATC 59.705 44.000 0.00 0.00 34.49 3.91
6181 6409 5.874810 GTCTATCCTGTACAAACAAGCATCA 59.125 40.000 0.00 0.00 34.49 3.07
6182 6410 6.540189 GTCTATCCTGTACAAACAAGCATCAT 59.460 38.462 0.00 0.00 34.49 2.45
6183 6411 7.066284 GTCTATCCTGTACAAACAAGCATCATT 59.934 37.037 0.00 0.00 34.49 2.57
6184 6412 5.375417 TCCTGTACAAACAAGCATCATTG 57.625 39.130 0.00 0.00 34.49 2.82
6185 6413 5.069318 TCCTGTACAAACAAGCATCATTGA 58.931 37.500 0.00 0.00 34.49 2.57
6186 6414 5.711506 TCCTGTACAAACAAGCATCATTGAT 59.288 36.000 0.00 0.00 34.49 2.57
6187 6415 5.803461 CCTGTACAAACAAGCATCATTGATG 59.197 40.000 20.14 20.14 37.87 3.07
6205 6433 9.617523 TCATTGATGCAATTAGTATCTCTTTGA 57.382 29.630 0.00 0.00 39.75 2.69
6206 6434 9.880064 CATTGATGCAATTAGTATCTCTTTGAG 57.120 33.333 0.00 0.00 39.75 3.02
6207 6435 7.488187 TGATGCAATTAGTATCTCTTTGAGC 57.512 36.000 0.00 0.00 39.75 4.26
6208 6436 7.049754 TGATGCAATTAGTATCTCTTTGAGCA 58.950 34.615 0.00 0.00 39.75 4.26
6209 6437 6.668541 TGCAATTAGTATCTCTTTGAGCAC 57.331 37.500 0.00 0.00 0.00 4.40
6210 6438 5.586243 TGCAATTAGTATCTCTTTGAGCACC 59.414 40.000 0.00 0.00 0.00 5.01
6211 6439 5.819901 GCAATTAGTATCTCTTTGAGCACCT 59.180 40.000 0.00 0.00 0.00 4.00
6212 6440 6.018343 GCAATTAGTATCTCTTTGAGCACCTC 60.018 42.308 0.00 0.00 0.00 3.85
6213 6441 5.599999 TTAGTATCTCTTTGAGCACCTCC 57.400 43.478 0.00 0.00 0.00 4.30
6214 6442 2.769095 AGTATCTCTTTGAGCACCTCCC 59.231 50.000 0.00 0.00 0.00 4.30
6215 6443 0.915364 ATCTCTTTGAGCACCTCCCC 59.085 55.000 0.00 0.00 0.00 4.81
6216 6444 0.178891 TCTCTTTGAGCACCTCCCCT 60.179 55.000 0.00 0.00 0.00 4.79
6217 6445 1.078823 TCTCTTTGAGCACCTCCCCTA 59.921 52.381 0.00 0.00 0.00 3.53
6218 6446 1.909302 CTCTTTGAGCACCTCCCCTAA 59.091 52.381 0.00 0.00 0.00 2.69
6219 6447 1.909302 TCTTTGAGCACCTCCCCTAAG 59.091 52.381 0.00 0.00 0.00 2.18
6220 6448 1.630878 CTTTGAGCACCTCCCCTAAGT 59.369 52.381 0.00 0.00 0.00 2.24
6221 6449 2.634639 TTGAGCACCTCCCCTAAGTA 57.365 50.000 0.00 0.00 0.00 2.24
6222 6450 1.861982 TGAGCACCTCCCCTAAGTAC 58.138 55.000 0.00 0.00 0.00 2.73
6223 6451 1.361543 TGAGCACCTCCCCTAAGTACT 59.638 52.381 0.00 0.00 0.00 2.73
6224 6452 2.225547 TGAGCACCTCCCCTAAGTACTT 60.226 50.000 13.68 13.68 0.00 2.24
6225 6453 2.838813 GAGCACCTCCCCTAAGTACTTT 59.161 50.000 14.49 0.00 0.00 2.66
6226 6454 2.572104 AGCACCTCCCCTAAGTACTTTG 59.428 50.000 14.49 11.84 0.00 2.77
6227 6455 2.940083 GCACCTCCCCTAAGTACTTTGC 60.940 54.545 14.49 10.92 0.00 3.68
6228 6456 2.304761 CACCTCCCCTAAGTACTTTGCA 59.695 50.000 14.49 0.00 0.00 4.08
6229 6457 3.054361 CACCTCCCCTAAGTACTTTGCAT 60.054 47.826 14.49 0.00 0.00 3.96
6230 6458 3.200165 ACCTCCCCTAAGTACTTTGCATC 59.800 47.826 14.49 0.00 0.00 3.91
6231 6459 3.433740 CCTCCCCTAAGTACTTTGCATCC 60.434 52.174 14.49 0.00 0.00 3.51
6232 6460 2.508300 TCCCCTAAGTACTTTGCATCCC 59.492 50.000 14.49 0.00 0.00 3.85
6233 6461 2.241176 CCCCTAAGTACTTTGCATCCCA 59.759 50.000 14.49 0.00 0.00 4.37
6234 6462 3.308832 CCCCTAAGTACTTTGCATCCCAA 60.309 47.826 14.49 0.00 0.00 4.12
6235 6463 4.340617 CCCTAAGTACTTTGCATCCCAAA 58.659 43.478 14.49 0.00 40.97 3.28
6254 6482 5.920273 CCCAAAGTACTTTGCATTGTACAAG 59.080 40.000 33.59 19.63 46.25 3.16
6255 6483 5.402270 CCAAAGTACTTTGCATTGTACAAGC 59.598 40.000 33.59 16.52 46.25 4.01
6322 6575 7.485913 CCTTTACATGATTACATCACTTGCAAC 59.514 37.037 0.00 0.00 43.01 4.17
6328 6581 7.503521 TGATTACATCACTTGCAACAAAGTA 57.496 32.000 0.00 0.00 38.34 2.24
6329 6582 7.584108 TGATTACATCACTTGCAACAAAGTAG 58.416 34.615 0.00 0.00 38.34 2.57
6334 6587 6.488006 ACATCACTTGCAACAAAGTAGAGATT 59.512 34.615 0.00 0.00 38.34 2.40
6336 6589 6.291377 TCACTTGCAACAAAGTAGAGATTCT 58.709 36.000 0.00 0.00 38.34 2.40
6341 6594 5.928839 TGCAACAAAGTAGAGATTCTGAGTC 59.071 40.000 0.00 0.00 0.00 3.36
6343 6596 6.090628 GCAACAAAGTAGAGATTCTGAGTCTG 59.909 42.308 7.47 0.00 0.00 3.51
6366 6621 4.755411 CGAGCTAAACCAGGTTCAGATTA 58.245 43.478 6.68 0.00 34.30 1.75
6403 6660 9.901172 ATACCATCCTTTACTACTAACCAAAAG 57.099 33.333 0.00 0.00 0.00 2.27
6404 6661 7.752638 ACCATCCTTTACTACTAACCAAAAGT 58.247 34.615 0.00 0.00 0.00 2.66
6405 6662 8.222637 ACCATCCTTTACTACTAACCAAAAGTT 58.777 33.333 0.00 0.00 42.83 2.66
6406 6663 9.074576 CCATCCTTTACTACTAACCAAAAGTTT 57.925 33.333 0.00 0.00 40.05 2.66
6462 6719 2.975489 AGTCTTGGACATGAACTCACCT 59.025 45.455 0.00 0.00 34.60 4.00
6542 6799 5.007234 TCCAACTAACGTGTGAAATTGTGAG 59.993 40.000 0.00 0.00 0.00 3.51
6545 6802 0.951558 ACGTGTGAAATTGTGAGGGC 59.048 50.000 0.00 0.00 0.00 5.19
6629 6886 0.981183 ATTGGAGAAGGTGCACCGTA 59.019 50.000 29.68 11.97 42.08 4.02
6713 6971 6.183360 GCCTACTAATCAACTACGACAAAACC 60.183 42.308 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.904099 AGAACTTTGTAGTGCTAGTTTGTAAT 57.096 30.769 0.00 0.00 38.59 1.89
2 3 7.767198 ACAAGAACTTTGTAGTGCTAGTTTGTA 59.233 33.333 0.00 0.00 39.51 2.41
5 6 7.625828 AACAAGAACTTTGTAGTGCTAGTTT 57.374 32.000 0.00 0.00 39.51 2.66
6 7 7.625828 AAACAAGAACTTTGTAGTGCTAGTT 57.374 32.000 0.00 0.00 39.51 2.24
7 8 7.625828 AAAACAAGAACTTTGTAGTGCTAGT 57.374 32.000 0.00 0.00 39.51 2.57
10 11 8.682710 TGATAAAAACAAGAACTTTGTAGTGCT 58.317 29.630 0.00 0.00 42.45 4.40
11 12 8.743099 GTGATAAAAACAAGAACTTTGTAGTGC 58.257 33.333 0.00 0.00 34.01 4.40
12 13 9.233232 GGTGATAAAAACAAGAACTTTGTAGTG 57.767 33.333 0.00 0.00 34.01 2.74
13 14 8.962679 TGGTGATAAAAACAAGAACTTTGTAGT 58.037 29.630 0.00 0.00 35.68 2.73
14 15 9.965824 ATGGTGATAAAAACAAGAACTTTGTAG 57.034 29.630 0.00 0.00 31.50 2.74
34 35 7.665145 TCAGAAAATTATTGTGTCAGATGGTGA 59.335 33.333 0.00 0.00 0.00 4.02
74 80 1.059913 GATGGTAGATGGAGGGTGGG 58.940 60.000 0.00 0.00 0.00 4.61
75 81 1.806496 TGATGGTAGATGGAGGGTGG 58.194 55.000 0.00 0.00 0.00 4.61
189 203 3.442076 GAGGAAGAGGAAAGGTACAGGA 58.558 50.000 0.00 0.00 0.00 3.86
190 204 2.502130 GGAGGAAGAGGAAAGGTACAGG 59.498 54.545 0.00 0.00 0.00 4.00
263 277 2.225547 ACAGTGGTGGTGGACTATAGGT 60.226 50.000 4.43 0.00 0.00 3.08
331 345 1.588082 GGTGAAGTAGGAACGGCGA 59.412 57.895 16.62 0.00 0.00 5.54
333 347 2.098831 GCGGTGAAGTAGGAACGGC 61.099 63.158 0.00 0.00 33.82 5.68
404 418 1.879380 CACGGAATGACCAAAAGCTCA 59.121 47.619 0.00 0.00 38.90 4.26
421 435 2.666508 CAGTTCGGGTCAAGTAATCACG 59.333 50.000 0.00 0.00 0.00 4.35
471 485 4.080299 GGATCTAGATTGTTTGGAGGGTGT 60.080 45.833 6.70 0.00 0.00 4.16
506 520 4.527038 GGTTCGATACAGAGATATGGGGAA 59.473 45.833 0.00 0.00 0.00 3.97
525 539 0.036671 AGGTCCCGAATTCGTGGTTC 60.037 55.000 25.10 19.46 37.74 3.62
539 553 5.416271 TTTCCAGATGTACACTAAGGTCC 57.584 43.478 0.00 0.00 0.00 4.46
546 560 5.376625 ACAACACATTTCCAGATGTACACT 58.623 37.500 0.00 0.00 38.15 3.55
571 585 2.891580 AGATCTCCACAACTACGTGTGT 59.108 45.455 0.00 0.00 46.18 3.72
606 620 7.308435 GGACTTCAAACAATTCAACTCCTATG 58.692 38.462 0.00 0.00 0.00 2.23
625 639 6.374613 CCTAGAATACCTTTTTGTGGGACTTC 59.625 42.308 0.00 0.00 0.00 3.01
822 836 6.740110 AGTAAGATGCGTATATATAGCTGGC 58.260 40.000 0.00 6.81 0.00 4.85
836 852 7.649705 AGACAGAACACATATAAGTAAGATGCG 59.350 37.037 0.00 0.00 0.00 4.73
852 868 2.221981 CGGCAAAAGAGAGACAGAACAC 59.778 50.000 0.00 0.00 0.00 3.32
861 877 4.889832 AATAATCTGCGGCAAAAGAGAG 57.110 40.909 3.44 0.00 0.00 3.20
871 887 7.489113 GGATTGGCATAATTAAATAATCTGCGG 59.511 37.037 11.42 0.00 36.18 5.69
1326 1342 6.172630 TGCATCAGTTGTATCAGCTTTCTTA 58.827 36.000 0.00 0.00 0.00 2.10
1443 1459 3.068873 TGTCAACTGGGCCAAATAACAAC 59.931 43.478 8.04 0.40 0.00 3.32
1469 1485 2.272678 ACACGTCACACAAAATCACGA 58.727 42.857 0.00 0.00 34.55 4.35
1881 1898 7.947282 AGCAGTGCAAAAGGTATAAGTTTTAA 58.053 30.769 19.20 0.00 0.00 1.52
1890 1907 7.713764 CTTTTAAAAGCAGTGCAAAAGGTAT 57.286 32.000 21.87 0.00 34.22 2.73
2011 2044 7.494625 CAGTACTTAAGAAACAACAGTGGAGAA 59.505 37.037 10.09 0.00 0.00 2.87
2153 2189 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
2156 2192 6.295180 GGACTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
2157 2193 5.541484 GGACTTATATTTAGGAACGGAGGGA 59.459 44.000 0.00 0.00 0.00 4.20
2158 2194 5.543020 AGGACTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
2159 2195 6.667558 AGGACTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
2160 2196 8.959705 AAAAGGACTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
2176 2212 8.055790 CCCTTATTGGAATCTCTAAAAGGACTT 58.944 37.037 0.00 0.00 38.35 3.01
2177 2213 7.406151 TCCCTTATTGGAATCTCTAAAAGGACT 59.594 37.037 0.00 0.00 38.35 3.85
2178 2214 7.499563 GTCCCTTATTGGAATCTCTAAAAGGAC 59.500 40.741 0.00 0.00 35.80 3.85
2179 2215 7.406151 AGTCCCTTATTGGAATCTCTAAAAGGA 59.594 37.037 0.00 0.00 35.80 3.36
2180 2216 7.578203 AGTCCCTTATTGGAATCTCTAAAAGG 58.422 38.462 0.00 0.00 35.80 3.11
2181 2217 9.549078 GTAGTCCCTTATTGGAATCTCTAAAAG 57.451 37.037 0.00 0.00 35.80 2.27
2182 2218 9.053472 TGTAGTCCCTTATTGGAATCTCTAAAA 57.947 33.333 0.00 0.00 35.80 1.52
2183 2219 8.618240 TGTAGTCCCTTATTGGAATCTCTAAA 57.382 34.615 0.00 0.00 35.80 1.85
2184 2220 8.798975 ATGTAGTCCCTTATTGGAATCTCTAA 57.201 34.615 0.00 0.00 35.80 2.10
2185 2221 9.310449 GTATGTAGTCCCTTATTGGAATCTCTA 57.690 37.037 0.00 0.00 35.80 2.43
2186 2222 7.039644 CGTATGTAGTCCCTTATTGGAATCTCT 60.040 40.741 0.00 0.00 35.80 3.10
2187 2223 7.039923 TCGTATGTAGTCCCTTATTGGAATCTC 60.040 40.741 0.00 0.00 35.80 2.75
2188 2224 6.781014 TCGTATGTAGTCCCTTATTGGAATCT 59.219 38.462 0.00 0.00 35.80 2.40
2189 2225 6.989659 TCGTATGTAGTCCCTTATTGGAATC 58.010 40.000 0.00 0.00 35.80 2.52
2190 2226 6.989155 TCGTATGTAGTCCCTTATTGGAAT 57.011 37.500 0.00 0.00 35.80 3.01
2191 2227 6.684613 GCTTCGTATGTAGTCCCTTATTGGAA 60.685 42.308 0.00 0.00 35.80 3.53
2192 2228 5.221382 GCTTCGTATGTAGTCCCTTATTGGA 60.221 44.000 0.00 0.00 38.35 3.53
2193 2229 4.989168 GCTTCGTATGTAGTCCCTTATTGG 59.011 45.833 0.00 0.00 0.00 3.16
2194 2230 5.597806 TGCTTCGTATGTAGTCCCTTATTG 58.402 41.667 0.00 0.00 0.00 1.90
2195 2231 5.864418 TGCTTCGTATGTAGTCCCTTATT 57.136 39.130 0.00 0.00 0.00 1.40
2196 2232 5.864418 TTGCTTCGTATGTAGTCCCTTAT 57.136 39.130 0.00 0.00 0.00 1.73
2197 2233 5.186409 ACTTTGCTTCGTATGTAGTCCCTTA 59.814 40.000 0.00 0.00 0.00 2.69
2198 2234 4.020485 ACTTTGCTTCGTATGTAGTCCCTT 60.020 41.667 0.00 0.00 0.00 3.95
2199 2235 3.514309 ACTTTGCTTCGTATGTAGTCCCT 59.486 43.478 0.00 0.00 0.00 4.20
2200 2236 3.617263 CACTTTGCTTCGTATGTAGTCCC 59.383 47.826 0.00 0.00 0.00 4.46
2201 2237 4.491676 TCACTTTGCTTCGTATGTAGTCC 58.508 43.478 0.00 0.00 0.00 3.85
2202 2238 5.061064 CACTCACTTTGCTTCGTATGTAGTC 59.939 44.000 0.00 0.00 0.00 2.59
2203 2239 4.923871 CACTCACTTTGCTTCGTATGTAGT 59.076 41.667 0.00 0.00 0.00 2.73
2204 2240 5.161358 TCACTCACTTTGCTTCGTATGTAG 58.839 41.667 0.00 0.00 0.00 2.74
2205 2241 5.128992 TCACTCACTTTGCTTCGTATGTA 57.871 39.130 0.00 0.00 0.00 2.29
2206 2242 3.990092 TCACTCACTTTGCTTCGTATGT 58.010 40.909 0.00 0.00 0.00 2.29
2207 2243 4.990543 TTCACTCACTTTGCTTCGTATG 57.009 40.909 0.00 0.00 0.00 2.39
2208 2244 5.349817 CAGATTCACTCACTTTGCTTCGTAT 59.650 40.000 0.00 0.00 0.00 3.06
2209 2245 4.686091 CAGATTCACTCACTTTGCTTCGTA 59.314 41.667 0.00 0.00 0.00 3.43
2210 2246 3.496130 CAGATTCACTCACTTTGCTTCGT 59.504 43.478 0.00 0.00 0.00 3.85
2211 2247 3.666374 GCAGATTCACTCACTTTGCTTCG 60.666 47.826 0.00 0.00 0.00 3.79
2212 2248 3.251729 TGCAGATTCACTCACTTTGCTTC 59.748 43.478 0.00 0.00 0.00 3.86
2213 2249 3.004106 GTGCAGATTCACTCACTTTGCTT 59.996 43.478 0.00 0.00 34.29 3.91
2214 2250 2.551459 GTGCAGATTCACTCACTTTGCT 59.449 45.455 0.00 0.00 34.29 3.91
2215 2251 2.551459 AGTGCAGATTCACTCACTTTGC 59.449 45.455 0.00 0.00 43.28 3.68
2224 2260 8.430801 AGACATATTTTAGAGTGCAGATTCAC 57.569 34.615 0.00 0.00 37.24 3.18
2253 2289 9.872721 TTTCAATACAAACTACATACGGATGTA 57.127 29.630 19.32 19.32 44.77 2.29
2255 2291 9.864034 GATTTCAATACAAACTACATACGGATG 57.136 33.333 5.94 5.94 39.16 3.51
2256 2292 9.832445 AGATTTCAATACAAACTACATACGGAT 57.168 29.630 0.00 0.00 0.00 4.18
2257 2293 9.309516 GAGATTTCAATACAAACTACATACGGA 57.690 33.333 0.00 0.00 0.00 4.69
2258 2294 9.314321 AGAGATTTCAATACAAACTACATACGG 57.686 33.333 0.00 0.00 0.00 4.02
2278 2314 9.520515 TCCTAAATGCAAGTCTTTTTAGAGATT 57.479 29.630 14.10 0.00 0.00 2.40
2279 2315 9.520515 TTCCTAAATGCAAGTCTTTTTAGAGAT 57.479 29.630 14.10 0.00 0.00 2.75
2280 2316 8.784043 GTTCCTAAATGCAAGTCTTTTTAGAGA 58.216 33.333 14.10 8.58 0.00 3.10
2281 2317 7.746475 CGTTCCTAAATGCAAGTCTTTTTAGAG 59.254 37.037 14.10 6.94 0.00 2.43
2282 2318 7.308348 CCGTTCCTAAATGCAAGTCTTTTTAGA 60.308 37.037 14.10 1.97 0.00 2.10
2283 2319 6.801862 CCGTTCCTAAATGCAAGTCTTTTTAG 59.198 38.462 7.85 7.85 0.00 1.85
2284 2320 6.487331 TCCGTTCCTAAATGCAAGTCTTTTTA 59.513 34.615 0.00 0.00 0.00 1.52
2285 2321 5.300792 TCCGTTCCTAAATGCAAGTCTTTTT 59.699 36.000 0.00 0.00 0.00 1.94
2286 2322 4.825085 TCCGTTCCTAAATGCAAGTCTTTT 59.175 37.500 0.00 0.00 0.00 2.27
2287 2323 4.394729 TCCGTTCCTAAATGCAAGTCTTT 58.605 39.130 0.00 0.00 0.00 2.52
2288 2324 4.003648 CTCCGTTCCTAAATGCAAGTCTT 58.996 43.478 0.00 0.00 0.00 3.01
2289 2325 3.600388 CTCCGTTCCTAAATGCAAGTCT 58.400 45.455 0.00 0.00 0.00 3.24
2290 2326 2.678336 CCTCCGTTCCTAAATGCAAGTC 59.322 50.000 0.00 0.00 0.00 3.01
2291 2327 2.618045 CCCTCCGTTCCTAAATGCAAGT 60.618 50.000 0.00 0.00 0.00 3.16
2292 2328 2.017049 CCCTCCGTTCCTAAATGCAAG 58.983 52.381 0.00 0.00 0.00 4.01
2293 2329 1.631388 TCCCTCCGTTCCTAAATGCAA 59.369 47.619 0.00 0.00 0.00 4.08
2294 2330 1.209504 CTCCCTCCGTTCCTAAATGCA 59.790 52.381 0.00 0.00 0.00 3.96
2295 2331 1.209747 ACTCCCTCCGTTCCTAAATGC 59.790 52.381 0.00 0.00 0.00 3.56
2296 2332 3.705072 AGTACTCCCTCCGTTCCTAAATG 59.295 47.826 0.00 0.00 0.00 2.32
2297 2333 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2298 2334 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2299 2335 3.372025 GGTAGTACTCCCTCCGTTCCTAA 60.372 52.174 0.00 0.00 0.00 2.69
2300 2336 2.173569 GGTAGTACTCCCTCCGTTCCTA 59.826 54.545 0.00 0.00 0.00 2.94
2301 2337 1.064091 GGTAGTACTCCCTCCGTTCCT 60.064 57.143 0.00 0.00 0.00 3.36
2302 2338 1.064091 AGGTAGTACTCCCTCCGTTCC 60.064 57.143 0.11 0.00 0.00 3.62
2303 2339 2.296792 GAGGTAGTACTCCCTCCGTTC 58.703 57.143 21.08 0.00 41.22 3.95
2304 2340 2.433662 GAGGTAGTACTCCCTCCGTT 57.566 55.000 21.08 0.00 41.22 4.44
2308 2344 6.847421 TTTTTACAGAGGTAGTACTCCCTC 57.153 41.667 23.50 23.50 46.34 4.30
2335 2371 8.891671 ACTTTTGTGACCTAAAACGTCTTATA 57.108 30.769 0.00 0.00 0.00 0.98
2336 2372 7.797038 ACTTTTGTGACCTAAAACGTCTTAT 57.203 32.000 0.00 0.00 0.00 1.73
2337 2373 7.981225 ACTACTTTTGTGACCTAAAACGTCTTA 59.019 33.333 0.00 0.00 0.00 2.10
2339 2375 6.257193 CACTACTTTTGTGACCTAAAACGTCT 59.743 38.462 0.00 0.00 37.60 4.18
2340 2376 6.256321 TCACTACTTTTGTGACCTAAAACGTC 59.744 38.462 0.00 0.00 39.23 4.34
2341 2377 6.108015 TCACTACTTTTGTGACCTAAAACGT 58.892 36.000 0.00 0.00 39.23 3.99
2342 2378 6.592798 TCACTACTTTTGTGACCTAAAACG 57.407 37.500 0.00 0.00 39.23 3.60
2351 2387 6.993786 TGTTTCATGTCACTACTTTTGTGA 57.006 33.333 0.00 0.00 41.48 3.58
2352 2388 7.642669 AGATGTTTCATGTCACTACTTTTGTG 58.357 34.615 0.00 0.00 36.82 3.33
2353 2389 7.807977 AGATGTTTCATGTCACTACTTTTGT 57.192 32.000 0.00 0.00 0.00 2.83
2374 2440 8.152023 ACTCCCTCTGTGAACTTTTATAAGAT 57.848 34.615 0.00 0.00 35.30 2.40
2419 2485 6.216868 ACCACCAATATGTTTAAGACTACCCT 59.783 38.462 0.00 0.00 0.00 4.34
2453 2519 6.928492 TCCTGTTATTTCAAAATTTCTGTGCC 59.072 34.615 0.00 0.00 0.00 5.01
2467 2539 7.497595 ACTCCCTTTGTTTTTCCTGTTATTTC 58.502 34.615 0.00 0.00 0.00 2.17
2481 2553 5.635120 AGAAGCTGAAATACTCCCTTTGTT 58.365 37.500 0.00 0.00 0.00 2.83
2482 2554 5.248380 AGAAGCTGAAATACTCCCTTTGT 57.752 39.130 0.00 0.00 0.00 2.83
2483 2555 7.872113 ATAAGAAGCTGAAATACTCCCTTTG 57.128 36.000 0.00 0.00 0.00 2.77
2512 2584 9.020731 CCACCTTTACTATTACAGGTTGAAATT 57.979 33.333 0.00 0.00 37.56 1.82
2542 2614 8.561738 TCCTGTTCAATTACTGTATTCCTTTC 57.438 34.615 0.00 0.00 0.00 2.62
2631 2703 2.803155 TTCATGCTGCCACGGGAGAC 62.803 60.000 9.03 0.68 35.50 3.36
2688 2760 3.654414 AGTTAGCTCGTTCCAAAGTGAG 58.346 45.455 0.00 0.00 0.00 3.51
2710 2782 4.452455 AGAAAACAAGATTGGCAGTACTCG 59.548 41.667 0.00 0.00 0.00 4.18
2712 2784 6.715347 AAAGAAAACAAGATTGGCAGTACT 57.285 33.333 0.00 0.00 0.00 2.73
2762 2834 6.581171 AAACAGGAGCTTAGAAATTTCAGG 57.419 37.500 19.99 10.11 0.00 3.86
2888 2960 1.488393 AGGAGATTAGTTGCTGGAGGC 59.512 52.381 0.00 0.00 42.22 4.70
2905 2977 2.234661 CAAGCTACACCAGATCACAGGA 59.765 50.000 5.95 0.00 0.00 3.86
2982 3054 3.608241 CGCCAAAATCAAAAGTAGACGCA 60.608 43.478 0.00 0.00 0.00 5.24
3025 3098 6.757010 CCTAAACTACTTAGCCACATGTGTAG 59.243 42.308 23.79 18.35 36.43 2.74
3035 3108 4.564372 GTGCGTTACCTAAACTACTTAGCC 59.436 45.833 0.00 0.00 36.43 3.93
3054 3127 2.560504 TGGTTGCCTCTATATTGTGCG 58.439 47.619 0.00 0.00 0.00 5.34
3111 3187 6.331369 ACACAGACAATCCCTACAAAAATG 57.669 37.500 0.00 0.00 0.00 2.32
3356 3434 7.114754 TCAACAATGAAGCAGAAATAGGATCT 58.885 34.615 0.00 0.00 30.99 2.75
3498 3579 4.472108 CACCCTGTTACCAAGGGATAGTTA 59.528 45.833 15.39 0.00 45.50 2.24
3565 3646 2.294074 GTGCCGAAATGTATTAGCCCA 58.706 47.619 0.00 0.00 0.00 5.36
3709 3791 4.999950 ACTTTGCAAATGTCCAACAACAAA 59.000 33.333 13.23 0.00 31.81 2.83
3839 3921 6.477253 TGCACTCTATGTATAAAACCCAACA 58.523 36.000 0.00 0.00 0.00 3.33
3859 3941 4.358851 TGCAACTTTGACAACTATTGCAC 58.641 39.130 20.78 3.77 45.38 4.57
3867 3956 3.312146 CCCCAAAATGCAACTTTGACAAC 59.688 43.478 20.53 0.00 0.00 3.32
3888 3977 5.957842 TGTTTTAGACATTGACATGGTCC 57.042 39.130 0.00 0.00 34.27 4.46
3928 4024 5.892568 ACAGACGGAGAAAGTATGTCATAC 58.107 41.667 14.17 14.17 39.50 2.39
3929 4025 7.634671 TTACAGACGGAGAAAGTATGTCATA 57.365 36.000 0.00 0.00 42.21 2.15
3930 4026 6.525578 TTACAGACGGAGAAAGTATGTCAT 57.474 37.500 0.00 0.00 42.21 3.06
3955 4051 9.607285 AAAGTTCGTTGTATGATTGTCATTTAC 57.393 29.630 0.00 0.00 38.26 2.01
4006 4113 7.924541 AGGTACTATTTTCACCTTACCAATCA 58.075 34.615 0.00 0.00 39.73 2.57
4118 4225 8.688747 TGACATGGTTATCAATATGCATGTTA 57.311 30.769 10.16 0.00 32.96 2.41
4199 4306 4.861462 CAGAATCGGATCCATATTCGACTG 59.139 45.833 22.18 15.36 45.75 3.51
4270 4378 5.286082 CGAAGTCCTCCAAATTAAAAATGCG 59.714 40.000 0.00 0.00 0.00 4.73
4333 4441 4.066710 ACTTTAGATCGAACGCAAAAGC 57.933 40.909 13.87 0.00 0.00 3.51
4341 4457 3.866327 GCTCAGGGAACTTTAGATCGAAC 59.134 47.826 0.00 0.00 40.21 3.95
4464 4681 1.312815 AGGACTGCAGCAAAGTTGAC 58.687 50.000 15.27 0.00 0.00 3.18
4484 4701 7.735917 TCTTCTGGTATTTCTCAGAAAGTTCA 58.264 34.615 5.94 2.98 45.67 3.18
4493 4710 5.882557 GCCAAATCTCTTCTGGTATTTCTCA 59.117 40.000 0.00 0.00 32.46 3.27
4611 4828 0.817654 GTACCTTTTCCATGCCCAGC 59.182 55.000 0.00 0.00 0.00 4.85
4827 5044 2.869192 GCCGTTTTGCTTTTGGATCAAA 59.131 40.909 0.00 0.00 0.00 2.69
5135 5352 3.194968 GTGGTTCAGGAAGTTCGATAGGA 59.805 47.826 0.00 0.00 0.00 2.94
5264 5481 3.616821 GGGAACTTTGAACTGTTTTGCAC 59.383 43.478 0.00 0.00 0.00 4.57
5414 5631 8.939929 CATGATACCTTCACATATTCCACATAC 58.060 37.037 0.00 0.00 37.11 2.39
5481 5698 6.183360 TGGAAGCTCTTCAAAAAGCACAAATA 60.183 34.615 11.27 0.00 41.06 1.40
5517 5734 4.865228 TGAACCCCACCCCACCCA 62.865 66.667 0.00 0.00 0.00 4.51
5582 5803 2.035576 AGACCGAGTCAGTGTTGTTACC 59.964 50.000 6.78 0.00 34.60 2.85
5688 5909 3.921767 CTTGACGCGGCAGAGCTCA 62.922 63.158 17.30 1.05 34.40 4.26
5892 6114 1.133407 GTCTGATCGACCAGTCACTCC 59.867 57.143 6.69 0.00 36.62 3.85
5906 6128 4.816385 AGAAACGTCACAACATTGTCTGAT 59.184 37.500 0.00 0.00 39.91 2.90
6015 6242 3.391296 ACAAAGTCCTCTAGGTTGAAGCA 59.609 43.478 0.00 0.00 36.34 3.91
6048 6276 3.181499 GGCTTCATGAGAGCAATTCACAG 60.181 47.826 22.72 5.54 29.74 3.66
6060 6288 2.486472 ACTCCACAAGGCTTCATGAG 57.514 50.000 9.15 10.95 33.74 2.90
6061 6289 3.173151 TCTACTCCACAAGGCTTCATGA 58.827 45.455 9.15 0.00 33.74 3.07
6063 6291 4.521146 CATTCTACTCCACAAGGCTTCAT 58.479 43.478 0.00 0.00 33.74 2.57
6064 6292 3.869912 GCATTCTACTCCACAAGGCTTCA 60.870 47.826 0.00 0.00 33.74 3.02
6065 6293 2.680339 GCATTCTACTCCACAAGGCTTC 59.320 50.000 0.00 0.00 33.74 3.86
6066 6294 2.040278 TGCATTCTACTCCACAAGGCTT 59.960 45.455 0.00 0.00 33.74 4.35
6071 6299 3.411446 CACCTTGCATTCTACTCCACAA 58.589 45.455 0.00 0.00 0.00 3.33
6074 6302 2.113860 GCACCTTGCATTCTACTCCA 57.886 50.000 0.00 0.00 44.26 3.86
6112 6340 7.956328 TGTAGAGATAAGCACCTAAAGAGAA 57.044 36.000 0.00 0.00 0.00 2.87
6114 6342 9.906660 CTTATGTAGAGATAAGCACCTAAAGAG 57.093 37.037 0.00 0.00 30.96 2.85
6117 6345 8.777578 TCCTTATGTAGAGATAAGCACCTAAA 57.222 34.615 1.76 0.00 35.41 1.85
6120 6348 7.675062 CAATCCTTATGTAGAGATAAGCACCT 58.325 38.462 1.76 0.00 35.41 4.00
6121 6349 6.370166 GCAATCCTTATGTAGAGATAAGCACC 59.630 42.308 1.76 0.00 35.41 5.01
6123 6351 6.270927 AGGCAATCCTTATGTAGAGATAAGCA 59.729 38.462 1.76 0.00 40.66 3.91
6136 6364 7.408013 AGACCCTTAATTAGGCAATCCTTAT 57.592 36.000 0.00 0.00 40.66 1.73
6137 6365 6.841781 AGACCCTTAATTAGGCAATCCTTA 57.158 37.500 0.00 0.00 40.66 2.69
6138 6366 5.734031 AGACCCTTAATTAGGCAATCCTT 57.266 39.130 0.00 0.00 40.66 3.36
6139 6367 6.012421 GGATAGACCCTTAATTAGGCAATCCT 60.012 42.308 9.88 0.00 46.57 3.24
6140 6368 6.012421 AGGATAGACCCTTAATTAGGCAATCC 60.012 42.308 9.46 9.46 43.27 3.01
6141 6369 6.881602 CAGGATAGACCCTTAATTAGGCAATC 59.118 42.308 0.00 0.00 43.27 2.67
6142 6370 6.332901 ACAGGATAGACCCTTAATTAGGCAAT 59.667 38.462 0.00 0.00 43.27 3.56
6143 6371 5.670361 ACAGGATAGACCCTTAATTAGGCAA 59.330 40.000 0.00 0.00 43.27 4.52
6144 6372 5.224441 ACAGGATAGACCCTTAATTAGGCA 58.776 41.667 0.00 0.00 43.27 4.75
6145 6373 5.827326 ACAGGATAGACCCTTAATTAGGC 57.173 43.478 0.00 0.00 43.27 3.93
6146 6374 7.850935 TGTACAGGATAGACCCTTAATTAGG 57.149 40.000 0.00 0.00 44.33 2.69
6147 6375 9.543783 GTTTGTACAGGATAGACCCTTAATTAG 57.456 37.037 0.00 0.00 40.05 1.73
6148 6376 9.049050 TGTTTGTACAGGATAGACCCTTAATTA 57.951 33.333 0.00 0.00 40.05 1.40
6149 6377 7.924541 TGTTTGTACAGGATAGACCCTTAATT 58.075 34.615 0.00 0.00 40.05 1.40
6150 6378 7.504926 TGTTTGTACAGGATAGACCCTTAAT 57.495 36.000 0.00 0.00 40.05 1.40
6151 6379 6.938698 TGTTTGTACAGGATAGACCCTTAA 57.061 37.500 0.00 0.00 40.05 1.85
6152 6380 6.575649 GCTTGTTTGTACAGGATAGACCCTTA 60.576 42.308 0.00 0.00 40.05 2.69
6153 6381 5.803470 GCTTGTTTGTACAGGATAGACCCTT 60.803 44.000 0.00 0.00 40.05 3.95
6154 6382 4.323562 GCTTGTTTGTACAGGATAGACCCT 60.324 45.833 0.00 0.00 40.05 4.34
6155 6383 3.939592 GCTTGTTTGTACAGGATAGACCC 59.060 47.826 0.00 0.00 40.05 4.46
6156 6384 4.575885 TGCTTGTTTGTACAGGATAGACC 58.424 43.478 0.00 0.00 33.45 3.85
6157 6385 5.874810 TGATGCTTGTTTGTACAGGATAGAC 59.125 40.000 0.00 0.00 33.45 2.59
6158 6386 6.048732 TGATGCTTGTTTGTACAGGATAGA 57.951 37.500 0.00 0.00 33.45 1.98
6159 6387 6.932356 ATGATGCTTGTTTGTACAGGATAG 57.068 37.500 0.00 0.00 33.45 2.08
6160 6388 6.883756 TCAATGATGCTTGTTTGTACAGGATA 59.116 34.615 0.00 0.00 33.45 2.59
6161 6389 5.711506 TCAATGATGCTTGTTTGTACAGGAT 59.288 36.000 0.00 0.00 33.45 3.24
6162 6390 5.069318 TCAATGATGCTTGTTTGTACAGGA 58.931 37.500 0.00 0.00 33.45 3.86
6163 6391 5.375417 TCAATGATGCTTGTTTGTACAGG 57.625 39.130 0.00 0.00 35.28 4.00
6164 6392 6.864560 CATCAATGATGCTTGTTTGTACAG 57.135 37.500 10.55 0.00 32.76 2.74
6179 6407 9.617523 TCAAAGAGATACTAATTGCATCAATGA 57.382 29.630 0.00 0.00 34.04 2.57
6180 6408 9.880064 CTCAAAGAGATACTAATTGCATCAATG 57.120 33.333 0.00 0.00 34.04 2.82
6181 6409 8.566260 GCTCAAAGAGATACTAATTGCATCAAT 58.434 33.333 0.00 0.00 35.39 2.57
6182 6410 7.553760 TGCTCAAAGAGATACTAATTGCATCAA 59.446 33.333 0.00 0.00 0.00 2.57
6183 6411 7.011763 GTGCTCAAAGAGATACTAATTGCATCA 59.988 37.037 0.00 0.00 0.00 3.07
6184 6412 7.351223 GTGCTCAAAGAGATACTAATTGCATC 58.649 38.462 0.00 0.00 0.00 3.91
6185 6413 6.261826 GGTGCTCAAAGAGATACTAATTGCAT 59.738 38.462 0.00 0.00 0.00 3.96
6186 6414 5.586243 GGTGCTCAAAGAGATACTAATTGCA 59.414 40.000 0.00 0.00 0.00 4.08
6187 6415 5.819901 AGGTGCTCAAAGAGATACTAATTGC 59.180 40.000 0.00 0.00 0.00 3.56
6188 6416 6.481644 GGAGGTGCTCAAAGAGATACTAATTG 59.518 42.308 0.00 0.00 31.08 2.32
6189 6417 6.408662 GGGAGGTGCTCAAAGAGATACTAATT 60.409 42.308 0.00 0.00 31.08 1.40
6190 6418 5.071115 GGGAGGTGCTCAAAGAGATACTAAT 59.929 44.000 0.00 0.00 31.08 1.73
6191 6419 4.406003 GGGAGGTGCTCAAAGAGATACTAA 59.594 45.833 0.00 0.00 31.08 2.24
6192 6420 3.961408 GGGAGGTGCTCAAAGAGATACTA 59.039 47.826 0.00 0.00 31.08 1.82
6193 6421 2.769095 GGGAGGTGCTCAAAGAGATACT 59.231 50.000 0.00 0.00 31.08 2.12
6194 6422 2.158885 GGGGAGGTGCTCAAAGAGATAC 60.159 54.545 0.00 0.00 31.08 2.24
6195 6423 2.119495 GGGGAGGTGCTCAAAGAGATA 58.881 52.381 0.00 0.00 31.08 1.98
6196 6424 0.915364 GGGGAGGTGCTCAAAGAGAT 59.085 55.000 0.00 0.00 31.08 2.75
6197 6425 0.178891 AGGGGAGGTGCTCAAAGAGA 60.179 55.000 0.00 0.00 31.08 3.10
6198 6426 1.573108 TAGGGGAGGTGCTCAAAGAG 58.427 55.000 0.00 0.00 31.08 2.85
6199 6427 1.909302 CTTAGGGGAGGTGCTCAAAGA 59.091 52.381 0.00 0.00 31.08 2.52
6200 6428 1.630878 ACTTAGGGGAGGTGCTCAAAG 59.369 52.381 0.00 0.00 31.08 2.77
6201 6429 1.742308 ACTTAGGGGAGGTGCTCAAA 58.258 50.000 0.00 0.00 31.08 2.69
6202 6430 2.185387 GTACTTAGGGGAGGTGCTCAA 58.815 52.381 0.00 0.00 31.08 3.02
6203 6431 1.361543 AGTACTTAGGGGAGGTGCTCA 59.638 52.381 0.00 0.00 31.08 4.26
6204 6432 2.162264 AGTACTTAGGGGAGGTGCTC 57.838 55.000 0.00 0.00 0.00 4.26
6205 6433 2.572104 CAAAGTACTTAGGGGAGGTGCT 59.428 50.000 8.92 0.00 0.00 4.40
6206 6434 2.940083 GCAAAGTACTTAGGGGAGGTGC 60.940 54.545 8.92 8.63 0.00 5.01
6207 6435 2.304761 TGCAAAGTACTTAGGGGAGGTG 59.695 50.000 8.92 1.91 0.00 4.00
6208 6436 2.627933 TGCAAAGTACTTAGGGGAGGT 58.372 47.619 8.92 0.00 0.00 3.85
6209 6437 3.433740 GGATGCAAAGTACTTAGGGGAGG 60.434 52.174 8.92 0.00 0.00 4.30
6210 6438 3.433740 GGGATGCAAAGTACTTAGGGGAG 60.434 52.174 8.92 0.00 0.00 4.30
6211 6439 2.508300 GGGATGCAAAGTACTTAGGGGA 59.492 50.000 8.92 3.61 0.00 4.81
6212 6440 2.241176 TGGGATGCAAAGTACTTAGGGG 59.759 50.000 8.92 0.57 0.00 4.79
6213 6441 3.644966 TGGGATGCAAAGTACTTAGGG 57.355 47.619 8.92 3.11 0.00 3.53
6214 6442 5.567138 CTTTGGGATGCAAAGTACTTAGG 57.433 43.478 8.92 5.71 35.56 2.69
6233 6461 5.212194 CGCTTGTACAATGCAAAGTACTTT 58.788 37.500 23.88 15.22 40.84 2.66
6234 6462 4.783242 CGCTTGTACAATGCAAAGTACTT 58.217 39.130 23.88 1.12 40.84 2.24
6235 6463 3.364964 GCGCTTGTACAATGCAAAGTACT 60.365 43.478 23.88 0.00 40.84 2.73
6236 6464 2.908626 GCGCTTGTACAATGCAAAGTAC 59.091 45.455 21.52 19.49 40.68 2.73
6237 6465 2.095466 GGCGCTTGTACAATGCAAAGTA 60.095 45.455 25.33 0.00 0.00 2.24
6254 6482 2.689646 GGATTTATCCTAGTCAGGCGC 58.310 52.381 0.00 0.00 43.73 6.53
6322 6575 4.797868 CGCAGACTCAGAATCTCTACTTTG 59.202 45.833 0.00 0.00 0.00 2.77
6328 6581 1.405105 GCTCGCAGACTCAGAATCTCT 59.595 52.381 0.00 0.00 0.00 3.10
6329 6582 1.405105 AGCTCGCAGACTCAGAATCTC 59.595 52.381 0.00 0.00 0.00 2.75
6334 6587 1.202582 GGTTTAGCTCGCAGACTCAGA 59.797 52.381 0.00 0.00 0.00 3.27
6336 6589 0.966179 TGGTTTAGCTCGCAGACTCA 59.034 50.000 0.00 0.00 0.00 3.41
6341 6594 1.079503 GAACCTGGTTTAGCTCGCAG 58.920 55.000 14.28 0.00 0.00 5.18
6343 6596 1.079503 CTGAACCTGGTTTAGCTCGC 58.920 55.000 17.09 2.20 0.00 5.03
6397 6654 7.525759 ACAAGCAACATGTTTTAAACTTTTGG 58.474 30.769 8.77 0.00 0.00 3.28
6400 6657 9.377312 ACATACAAGCAACATGTTTTAAACTTT 57.623 25.926 8.77 0.00 32.27 2.66
6401 6658 8.940768 ACATACAAGCAACATGTTTTAAACTT 57.059 26.923 8.77 5.20 32.27 2.66
6402 6659 8.940768 AACATACAAGCAACATGTTTTAAACT 57.059 26.923 8.77 0.00 39.27 2.66
6403 6660 9.419737 CAAACATACAAGCAACATGTTTTAAAC 57.580 29.630 8.77 0.20 45.78 2.01
6404 6661 9.155975 ACAAACATACAAGCAACATGTTTTAAA 57.844 25.926 8.77 0.00 45.78 1.52
6405 6662 8.709386 ACAAACATACAAGCAACATGTTTTAA 57.291 26.923 8.77 0.00 45.78 1.52
6406 6663 7.976175 TGACAAACATACAAGCAACATGTTTTA 59.024 29.630 8.77 0.00 45.78 1.52
6462 6719 3.094572 GGTACTACTACAGCTGTTCCCA 58.905 50.000 27.06 5.67 0.00 4.37
6629 6886 5.286267 TCTTTTAAGTTTGACCTCCGACT 57.714 39.130 0.00 0.00 0.00 4.18
6668 6926 1.004745 CCCTACCAGATTGCTTGTGGT 59.995 52.381 12.44 12.44 46.54 4.16
6713 6971 4.496895 GCACTAATCAGCGCAATTTTGTAG 59.503 41.667 11.47 5.89 29.89 2.74
6756 7015 3.555956 AGTTATTCTGCAAAGCGATACCG 59.444 43.478 0.00 0.00 39.16 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.