Multiple sequence alignment - TraesCS2B01G407400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G407400 chr2B 100.000 4885 0 0 1 4885 578140812 578135928 0.000000e+00 9022.0
1 TraesCS2B01G407400 chr2B 100.000 161 0 0 5017 5177 578135796 578135636 1.090000e-76 298.0
2 TraesCS2B01G407400 chr2B 98.630 146 2 0 5032 5177 732024228 732024373 5.140000e-65 259.0
3 TraesCS2B01G407400 chr2B 98.630 146 2 0 5032 5177 732224749 732224894 5.140000e-65 259.0
4 TraesCS2B01G407400 chr2D 92.955 4727 150 73 1 4646 492512997 492508373 0.000000e+00 6715.0
5 TraesCS2B01G407400 chr2D 82.317 164 4 5 4709 4847 492507991 492507828 9.110000e-23 119.0
6 TraesCS2B01G407400 chr2A 90.718 4762 181 100 1 4630 637682221 637677589 0.000000e+00 6104.0
7 TraesCS2B01G407400 chr2A 91.045 67 2 1 4716 4778 637677487 637677421 2.570000e-13 87.9
8 TraesCS2B01G407400 chr2A 97.222 36 0 1 3258 3292 5186744 5186709 5.600000e-05 60.2
9 TraesCS2B01G407400 chr6B 93.449 519 15 8 3488 3999 505256916 505256410 0.000000e+00 752.0
10 TraesCS2B01G407400 chr6B 81.340 836 117 23 2203 3014 162546061 162546881 1.220000e-180 643.0
11 TraesCS2B01G407400 chr6B 84.839 310 41 6 3276 3582 512873515 512873821 1.810000e-79 307.0
12 TraesCS2B01G407400 chr6B 89.017 173 17 1 2203 2373 512872811 512872983 4.060000e-51 213.0
13 TraesCS2B01G407400 chr6B 86.624 157 21 0 1189 1345 162545860 162546016 1.920000e-39 174.0
14 TraesCS2B01G407400 chr6B 86.957 138 16 2 5036 5172 668536102 668535966 2.500000e-33 154.0
15 TraesCS2B01G407400 chr5D 92.607 514 31 2 2517 3027 378325610 378326119 0.000000e+00 732.0
16 TraesCS2B01G407400 chr5D 93.103 493 23 6 3540 4029 378333758 378334242 0.000000e+00 712.0
17 TraesCS2B01G407400 chr6A 81.885 817 118 19 2200 2990 103264074 103264886 0.000000e+00 662.0
18 TraesCS2B01G407400 chr6A 85.577 312 37 6 3272 3582 450465277 450464973 2.330000e-83 320.0
19 TraesCS2B01G407400 chr6A 89.595 173 16 1 2203 2373 450465983 450465811 8.730000e-53 219.0
20 TraesCS2B01G407400 chr6D 81.481 837 109 30 2200 3014 85906197 85907009 0.000000e+00 645.0
21 TraesCS2B01G407400 chr6D 85.852 311 36 6 3273 3582 313281989 313281686 1.800000e-84 324.0
22 TraesCS2B01G407400 chr6D 89.595 173 16 1 2203 2373 313282693 313282521 8.730000e-53 219.0
23 TraesCS2B01G407400 chr6D 86.310 168 22 1 1189 1356 85906000 85906166 1.150000e-41 182.0
24 TraesCS2B01G407400 chr1D 87.455 279 35 0 3302 3580 231465068 231464790 6.470000e-84 322.0
25 TraesCS2B01G407400 chr1D 86.624 157 21 0 2203 2359 231466170 231466014 1.920000e-39 174.0
26 TraesCS2B01G407400 chr1D 97.222 36 1 0 3258 3293 263200727 263200762 1.560000e-05 62.1
27 TraesCS2B01G407400 chr1B 86.806 288 38 0 3293 3580 365021471 365021758 6.470000e-84 322.0
28 TraesCS2B01G407400 chr1A 86.458 288 39 0 3293 3580 317813374 317813661 3.010000e-82 316.0
29 TraesCS2B01G407400 chr1A 87.179 156 20 0 2203 2358 317812284 317812439 1.480000e-40 178.0
30 TraesCS2B01G407400 chr4B 86.268 284 36 3 3294 3575 671632088 671631806 6.510000e-79 305.0
31 TraesCS2B01G407400 chr4B 78.761 226 40 7 2717 2938 671632643 671632422 1.500000e-30 145.0
32 TraesCS2B01G407400 chr5B 98.639 147 1 1 5031 5177 473868736 473868881 5.140000e-65 259.0
33 TraesCS2B01G407400 chr3B 98.601 143 2 0 5035 5177 671522790 671522932 2.390000e-63 254.0
34 TraesCS2B01G407400 chr3B 97.203 143 4 0 5035 5177 213706314 213706456 5.180000e-60 243.0
35 TraesCS2B01G407400 chr3B 87.313 134 15 2 5035 5167 154362161 154362029 8.980000e-33 152.0
36 TraesCS2B01G407400 chr7A 92.254 142 11 0 5036 5177 158193932 158193791 8.790000e-48 202.0
37 TraesCS2B01G407400 chrUn 79.091 220 38 7 2717 2932 28396399 28396614 1.500000e-30 145.0
38 TraesCS2B01G407400 chrUn 91.176 102 8 1 2811 2911 431347150 431347049 2.510000e-28 137.0
39 TraesCS2B01G407400 chrUn 97.222 36 1 0 3258 3293 431347004 431346969 1.560000e-05 62.1
40 TraesCS2B01G407400 chr3A 85.926 135 19 0 5035 5169 672070404 672070538 1.500000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G407400 chr2B 578135636 578140812 5176 True 4660.00 9022 100.0000 1 5177 2 chr2B.!!$R1 5176
1 TraesCS2B01G407400 chr2D 492507828 492512997 5169 True 3417.00 6715 87.6360 1 4847 2 chr2D.!!$R1 4846
2 TraesCS2B01G407400 chr2A 637677421 637682221 4800 True 3095.95 6104 90.8815 1 4778 2 chr2A.!!$R2 4777
3 TraesCS2B01G407400 chr6B 505256410 505256916 506 True 752.00 752 93.4490 3488 3999 1 chr6B.!!$R1 511
4 TraesCS2B01G407400 chr6B 162545860 162546881 1021 False 408.50 643 83.9820 1189 3014 2 chr6B.!!$F1 1825
5 TraesCS2B01G407400 chr6B 512872811 512873821 1010 False 260.00 307 86.9280 2203 3582 2 chr6B.!!$F2 1379
6 TraesCS2B01G407400 chr5D 378325610 378326119 509 False 732.00 732 92.6070 2517 3027 1 chr5D.!!$F1 510
7 TraesCS2B01G407400 chr6A 103264074 103264886 812 False 662.00 662 81.8850 2200 2990 1 chr6A.!!$F1 790
8 TraesCS2B01G407400 chr6A 450464973 450465983 1010 True 269.50 320 87.5860 2203 3582 2 chr6A.!!$R1 1379
9 TraesCS2B01G407400 chr6D 85906000 85907009 1009 False 413.50 645 83.8955 1189 3014 2 chr6D.!!$F1 1825
10 TraesCS2B01G407400 chr6D 313281686 313282693 1007 True 271.50 324 87.7235 2203 3582 2 chr6D.!!$R1 1379
11 TraesCS2B01G407400 chr1D 231464790 231466170 1380 True 248.00 322 87.0395 2203 3580 2 chr1D.!!$R1 1377
12 TraesCS2B01G407400 chr1A 317812284 317813661 1377 False 247.00 316 86.8185 2203 3580 2 chr1A.!!$F1 1377
13 TraesCS2B01G407400 chr4B 671631806 671632643 837 True 225.00 305 82.5145 2717 3575 2 chr4B.!!$R1 858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
521 573 0.106217 CCTCTCTCTCTCCTCCCACC 60.106 65.0 0.00 0.0 0.00 4.61 F
1178 1266 1.022451 TACGAACAGGAATTGGCCGC 61.022 55.0 0.00 0.0 31.70 6.53 F
1713 1859 0.031043 TTCGTACCACGGTGTGAGTG 59.969 55.0 7.45 0.0 42.81 3.51 F
1841 1991 0.179062 ATGCGGCCTCACTCATCTTC 60.179 55.0 0.00 0.0 0.00 2.87 F
1844 1994 0.539051 CGGCCTCACTCATCTTCCTT 59.461 55.0 0.00 0.0 0.00 3.36 F
1869 2019 0.627768 ATTTCCCTCCCCTTCCCCTC 60.628 60.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 1678 0.096454 GAATCGCTGGCGGTAACAAC 59.904 55.000 14.94 0.00 40.25 3.32 R
2144 2319 1.527696 CGTTGCGTGGTACGTACTAG 58.472 55.000 24.07 16.11 44.73 2.57 R
3009 3408 1.599797 CCGAGGTTTCTTTGGCGGT 60.600 57.895 0.00 0.00 34.45 5.68 R
3089 3563 3.136123 CAGCTGGGATGGGTTGCG 61.136 66.667 5.57 0.00 0.00 4.85 R
3091 3565 3.136123 CGCAGCTGGGATGGGTTG 61.136 66.667 25.55 0.00 0.00 3.77 R
4242 4827 0.536724 CTCGGTGATGGTGATGGTGA 59.463 55.000 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 106 2.525629 TGTCCGGTGAGGCCTCAA 60.526 61.111 36.66 19.13 41.85 3.02
297 303 2.970324 TCGGCGCACACAAAGTCC 60.970 61.111 10.83 0.00 0.00 3.85
303 309 0.524392 CGCACACAAAGTCCGCAAAA 60.524 50.000 0.00 0.00 0.00 2.44
326 342 8.958119 AAAAATCATACATACATCTGGTACGT 57.042 30.769 0.00 0.00 34.07 3.57
344 360 2.843077 CGTATACGTATACTGCGGTGG 58.157 52.381 32.24 17.68 37.10 4.61
359 379 1.733526 GTGGAGTTTGGTTGCGCTT 59.266 52.632 9.73 0.00 0.00 4.68
360 380 0.317854 GTGGAGTTTGGTTGCGCTTC 60.318 55.000 9.73 0.76 0.00 3.86
495 547 1.958288 TTCTCCTCCTTTGCCTAGCT 58.042 50.000 0.00 0.00 0.00 3.32
496 548 1.958288 TCTCCTCCTTTGCCTAGCTT 58.042 50.000 0.00 0.00 0.00 3.74
510 562 3.832527 CCTAGCTTAGCTTCCTCTCTCT 58.167 50.000 13.44 0.00 40.44 3.10
511 563 3.821033 CCTAGCTTAGCTTCCTCTCTCTC 59.179 52.174 13.44 0.00 40.44 3.20
512 564 3.669939 AGCTTAGCTTCCTCTCTCTCT 57.330 47.619 0.00 0.00 33.89 3.10
515 567 3.688414 GCTTAGCTTCCTCTCTCTCTCCT 60.688 52.174 0.00 0.00 0.00 3.69
516 568 2.736670 AGCTTCCTCTCTCTCTCCTC 57.263 55.000 0.00 0.00 0.00 3.71
517 569 1.215423 AGCTTCCTCTCTCTCTCCTCC 59.785 57.143 0.00 0.00 0.00 4.30
518 570 1.754201 GCTTCCTCTCTCTCTCCTCCC 60.754 61.905 0.00 0.00 0.00 4.30
519 571 1.568597 CTTCCTCTCTCTCTCCTCCCA 59.431 57.143 0.00 0.00 0.00 4.37
520 572 0.923358 TCCTCTCTCTCTCCTCCCAC 59.077 60.000 0.00 0.00 0.00 4.61
521 573 0.106217 CCTCTCTCTCTCCTCCCACC 60.106 65.000 0.00 0.00 0.00 4.61
522 574 0.106217 CTCTCTCTCTCCTCCCACCC 60.106 65.000 0.00 0.00 0.00 4.61
523 575 1.075600 CTCTCTCTCCTCCCACCCC 60.076 68.421 0.00 0.00 0.00 4.95
524 576 2.041405 CTCTCTCCTCCCACCCCC 60.041 72.222 0.00 0.00 0.00 5.40
525 577 2.540910 TCTCTCCTCCCACCCCCT 60.541 66.667 0.00 0.00 0.00 4.79
526 578 2.041405 CTCTCCTCCCACCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
527 579 2.874245 TCTCCTCCCACCCCCTCA 60.874 66.667 0.00 0.00 0.00 3.86
528 580 2.689034 CTCCTCCCACCCCCTCAC 60.689 72.222 0.00 0.00 0.00 3.51
529 581 4.348495 TCCTCCCACCCCCTCACC 62.348 72.222 0.00 0.00 0.00 4.02
531 583 4.354943 CTCCCACCCCCTCACCCT 62.355 72.222 0.00 0.00 0.00 4.34
532 584 4.348495 TCCCACCCCCTCACCCTC 62.348 72.222 0.00 0.00 0.00 4.30
807 878 2.552315 GAGGAAGGAGATGAGCTAGACG 59.448 54.545 0.00 0.00 0.00 4.18
842 913 7.093509 ACCACAATTAATTCCCTACAATTCACC 60.094 37.037 0.00 0.00 0.00 4.02
849 920 3.256704 TCCCTACAATTCACCAGTCCTT 58.743 45.455 0.00 0.00 0.00 3.36
909 980 4.379813 CCACCTGTTGCACATACAGATTTC 60.380 45.833 16.84 0.00 44.52 2.17
961 1034 1.565156 ATTTGAGAGCGCGCGTTCAA 61.565 50.000 40.47 33.78 0.00 2.69
962 1035 2.158058 TTTGAGAGCGCGCGTTCAAG 62.158 55.000 40.47 11.41 31.85 3.02
963 1036 3.843240 GAGAGCGCGCGTTCAAGG 61.843 66.667 40.47 10.64 0.00 3.61
1019 1092 3.440415 GCAGCAGCAGCATCAGCA 61.440 61.111 4.63 0.00 45.49 4.41
1023 1096 2.875485 CAGCAGCATCAGCACCAC 59.125 61.111 0.00 0.00 45.49 4.16
1164 1252 2.571757 CCACAGCCGAGCTACGAA 59.428 61.111 7.07 0.00 45.77 3.85
1165 1253 1.805945 CCACAGCCGAGCTACGAAC 60.806 63.158 7.07 0.39 45.77 3.95
1166 1254 1.080772 CACAGCCGAGCTACGAACA 60.081 57.895 7.07 0.00 45.77 3.18
1167 1255 1.073216 CACAGCCGAGCTACGAACAG 61.073 60.000 7.07 0.32 45.77 3.16
1178 1266 1.022451 TACGAACAGGAATTGGCCGC 61.022 55.000 0.00 0.00 31.70 6.53
1391 1491 3.194620 AGGTCTCCAGGTAAGAGAGAGA 58.805 50.000 0.00 0.00 40.96 3.10
1392 1492 3.202151 AGGTCTCCAGGTAAGAGAGAGAG 59.798 52.174 0.00 0.00 40.96 3.20
1393 1493 3.053917 GGTCTCCAGGTAAGAGAGAGAGT 60.054 52.174 0.00 0.00 40.96 3.24
1394 1494 4.164604 GGTCTCCAGGTAAGAGAGAGAGTA 59.835 50.000 0.00 0.00 40.96 2.59
1396 1496 6.181908 GTCTCCAGGTAAGAGAGAGAGTAAA 58.818 44.000 0.00 0.00 40.96 2.01
1398 1498 7.340999 GTCTCCAGGTAAGAGAGAGAGTAAAAT 59.659 40.741 0.00 0.00 40.96 1.82
1399 1499 7.896496 TCTCCAGGTAAGAGAGAGAGTAAAATT 59.104 37.037 0.00 0.00 35.46 1.82
1400 1500 8.068892 TCCAGGTAAGAGAGAGAGTAAAATTC 57.931 38.462 0.00 0.00 0.00 2.17
1404 1504 9.984590 AGGTAAGAGAGAGAGTAAAATTCTACT 57.015 33.333 0.00 0.00 34.76 2.57
1458 1559 3.869272 CGCAGCGGCATCTTGTCC 61.869 66.667 7.00 0.00 41.24 4.02
1474 1575 1.103398 GTCCTGGGCATGATTTCCCG 61.103 60.000 0.00 0.00 45.60 5.14
1475 1576 1.076777 CCTGGGCATGATTTCCCGT 60.077 57.895 0.00 0.00 45.60 5.28
1482 1590 2.173669 ATGATTTCCCGTCGCGCAG 61.174 57.895 8.75 0.00 0.00 5.18
1568 1689 2.836479 AATTATGCGCCGTTGTTACC 57.164 45.000 4.18 0.00 0.00 2.85
1580 1701 1.022451 TTGTTACCGCCAGCGATTCC 61.022 55.000 14.67 0.00 42.83 3.01
1590 1711 1.221414 CAGCGATTCCCCTCGAATTC 58.779 55.000 0.00 0.00 41.47 2.17
1591 1712 0.249489 AGCGATTCCCCTCGAATTCG 60.249 55.000 21.78 21.78 41.47 3.34
1631 1752 3.144506 CTGGCCGATCTAATCAAATGCT 58.855 45.455 0.00 0.00 0.00 3.79
1646 1767 2.815647 GCTCCTCGGTTTCAGCGG 60.816 66.667 0.00 0.00 39.89 5.52
1647 1768 2.815647 CTCCTCGGTTTCAGCGGC 60.816 66.667 0.00 0.00 39.89 6.53
1648 1769 3.302347 CTCCTCGGTTTCAGCGGCT 62.302 63.158 0.00 0.00 39.89 5.52
1649 1770 3.121030 CCTCGGTTTCAGCGGCTG 61.121 66.667 23.72 23.72 39.89 4.85
1666 1807 2.364710 GGGTAGGCGTAGGGTGGT 60.365 66.667 0.00 0.00 0.00 4.16
1713 1859 0.031043 TTCGTACCACGGTGTGAGTG 59.969 55.000 7.45 0.00 42.81 3.51
1714 1860 2.019951 CGTACCACGGTGTGAGTGC 61.020 63.158 7.45 1.08 38.08 4.40
1715 1861 1.068417 GTACCACGGTGTGAGTGCA 59.932 57.895 7.45 0.00 38.22 4.57
1716 1862 0.944311 GTACCACGGTGTGAGTGCAG 60.944 60.000 7.45 0.00 38.22 4.41
1717 1863 2.094757 TACCACGGTGTGAGTGCAGG 62.095 60.000 7.45 0.00 38.22 4.85
1718 1864 2.666190 CACGGTGTGAGTGCAGGG 60.666 66.667 0.00 0.00 35.23 4.45
1719 1865 3.941188 ACGGTGTGAGTGCAGGGG 61.941 66.667 0.00 0.00 0.00 4.79
1841 1991 0.179062 ATGCGGCCTCACTCATCTTC 60.179 55.000 0.00 0.00 0.00 2.87
1842 1992 1.522580 GCGGCCTCACTCATCTTCC 60.523 63.158 0.00 0.00 0.00 3.46
1843 1993 1.965754 GCGGCCTCACTCATCTTCCT 61.966 60.000 0.00 0.00 0.00 3.36
1844 1994 0.539051 CGGCCTCACTCATCTTCCTT 59.461 55.000 0.00 0.00 0.00 3.36
1862 2012 3.665618 TCCTTTGTTTATTTCCCTCCCCT 59.334 43.478 0.00 0.00 0.00 4.79
1863 2013 4.108942 TCCTTTGTTTATTTCCCTCCCCTT 59.891 41.667 0.00 0.00 0.00 3.95
1864 2014 4.466370 CCTTTGTTTATTTCCCTCCCCTTC 59.534 45.833 0.00 0.00 0.00 3.46
1865 2015 3.750501 TGTTTATTTCCCTCCCCTTCC 57.249 47.619 0.00 0.00 0.00 3.46
1866 2016 2.313643 TGTTTATTTCCCTCCCCTTCCC 59.686 50.000 0.00 0.00 0.00 3.97
1867 2017 1.615659 TTATTTCCCTCCCCTTCCCC 58.384 55.000 0.00 0.00 0.00 4.81
1868 2018 0.735095 TATTTCCCTCCCCTTCCCCT 59.265 55.000 0.00 0.00 0.00 4.79
1869 2019 0.627768 ATTTCCCTCCCCTTCCCCTC 60.628 60.000 0.00 0.00 0.00 4.30
1887 2037 3.633986 CCCTCATTTTTCTACTGCCATCC 59.366 47.826 0.00 0.00 0.00 3.51
1888 2038 4.272489 CCTCATTTTTCTACTGCCATCCA 58.728 43.478 0.00 0.00 0.00 3.41
1911 2063 3.724966 TCAATTCCCCTCTCATCCCTA 57.275 47.619 0.00 0.00 0.00 3.53
1928 2080 2.289565 CCTAAAAAGACGAGATGGCCC 58.710 52.381 0.00 0.00 0.00 5.80
1960 2112 7.335127 ACTAATTCCCATTCTGCCTATATGT 57.665 36.000 0.00 0.00 0.00 2.29
1970 2122 5.975988 TCTGCCTATATGTTTCCTTCCTT 57.024 39.130 0.00 0.00 0.00 3.36
2036 2190 4.505039 CCCGGAGAGGAAGAAAAAGAGAAA 60.505 45.833 0.73 0.00 45.00 2.52
2045 2199 6.434340 AGGAAGAAAAAGAGAAAACACACACT 59.566 34.615 0.00 0.00 0.00 3.55
2114 2289 1.876156 CCGCTCTGTTTCTCTTGCTTT 59.124 47.619 0.00 0.00 0.00 3.51
2125 2300 3.480470 TCTCTTGCTTTCAGTCCTTTGG 58.520 45.455 0.00 0.00 0.00 3.28
2131 2306 4.724399 TGCTTTCAGTCCTTTGGTTGATA 58.276 39.130 0.00 0.00 0.00 2.15
2141 2316 7.337689 CAGTCCTTTGGTTGATAGATTGATTGA 59.662 37.037 0.00 0.00 0.00 2.57
2144 2319 8.906867 TCCTTTGGTTGATAGATTGATTGATTC 58.093 33.333 0.00 0.00 0.00 2.52
2193 2368 3.553828 AACCTTCCGTTTCTGTCTTGA 57.446 42.857 0.00 0.00 0.00 3.02
2547 2817 3.083997 GTCGTGGAGCCTCCCCAT 61.084 66.667 8.62 0.00 35.03 4.00
2649 2937 2.571757 GACATGACGGCCGAGACA 59.428 61.111 35.90 26.79 0.00 3.41
3027 3426 1.599797 ACCGCCAAAGAAACCTCGG 60.600 57.895 0.00 0.00 42.24 4.63
3589 4168 2.721231 GCAAGAAGCACAACGGCA 59.279 55.556 0.00 0.00 44.79 5.69
3859 4441 1.702886 CGTGTTTGAGCTCGATCAGT 58.297 50.000 13.97 0.00 0.00 3.41
3860 4442 1.651138 CGTGTTTGAGCTCGATCAGTC 59.349 52.381 13.97 4.28 0.00 3.51
4173 4756 0.322456 CCTTCCTCGCCATGGTTCAA 60.322 55.000 14.67 0.00 0.00 2.69
4201 4786 1.841919 TCAGCACCATGGATCATCAGT 59.158 47.619 21.47 0.00 0.00 3.41
4242 4827 4.813161 CAGACAATAACCTCGAAGCATCAT 59.187 41.667 0.00 0.00 0.00 2.45
4538 5129 3.779444 TGTAAGAGTCCCTGATGTCTGT 58.221 45.455 0.00 0.00 0.00 3.41
4576 5177 4.098960 TCTTCTTCTTTCGGCGGTATACAT 59.901 41.667 7.21 0.00 0.00 2.29
4650 5260 4.577693 AGAGGTCCGAAAACTGTTTTTACC 59.422 41.667 24.04 24.04 34.94 2.85
4651 5261 3.313249 AGGTCCGAAAACTGTTTTTACCG 59.687 43.478 24.53 20.28 34.94 4.02
4652 5262 3.065233 GGTCCGAAAACTGTTTTTACCGT 59.935 43.478 18.58 0.00 34.94 4.83
4653 5263 4.030366 GTCCGAAAACTGTTTTTACCGTG 58.970 43.478 18.58 11.69 34.94 4.94
4654 5264 3.065095 TCCGAAAACTGTTTTTACCGTGG 59.935 43.478 18.58 13.30 34.94 4.94
4655 5265 3.181498 CCGAAAACTGTTTTTACCGTGGT 60.181 43.478 18.58 0.00 34.94 4.16
4656 5266 3.787105 CGAAAACTGTTTTTACCGTGGTG 59.213 43.478 18.58 0.00 34.94 4.17
4657 5267 4.672283 CGAAAACTGTTTTTACCGTGGTGT 60.672 41.667 18.58 0.00 34.94 4.16
4658 5268 4.359971 AAACTGTTTTTACCGTGGTGTC 57.640 40.909 0.72 0.00 0.00 3.67
4659 5269 1.935199 ACTGTTTTTACCGTGGTGTCG 59.065 47.619 0.72 0.00 0.00 4.35
4660 5270 0.656785 TGTTTTTACCGTGGTGTCGC 59.343 50.000 0.72 0.00 0.00 5.19
4661 5271 0.041047 GTTTTTACCGTGGTGTCGCC 60.041 55.000 0.72 0.00 37.90 5.54
4662 5272 1.165284 TTTTTACCGTGGTGTCGCCC 61.165 55.000 0.72 0.00 36.04 6.13
4663 5273 3.534054 TTTACCGTGGTGTCGCCCC 62.534 63.158 0.72 0.00 36.04 5.80
4679 5289 3.448469 CCCCCTTGTTTTACCTGCA 57.552 52.632 0.00 0.00 0.00 4.41
4731 5661 9.347934 CTCTGTAGTTATTCGATCATATGTTCC 57.652 37.037 1.90 0.00 0.00 3.62
4778 5712 0.035739 TCTACGTGGCCCACCTTTTC 59.964 55.000 8.62 0.00 36.63 2.29
4807 5754 6.029346 ACCTTGCCAATATGACTTTTCTTG 57.971 37.500 0.00 0.00 0.00 3.02
4808 5755 4.866486 CCTTGCCAATATGACTTTTCTTGC 59.134 41.667 0.00 0.00 0.00 4.01
4809 5756 5.337009 CCTTGCCAATATGACTTTTCTTGCT 60.337 40.000 0.00 0.00 0.00 3.91
4811 5758 4.142622 TGCCAATATGACTTTTCTTGCTCG 60.143 41.667 0.00 0.00 0.00 5.03
4812 5759 4.731773 GCCAATATGACTTTTCTTGCTCGG 60.732 45.833 0.00 0.00 0.00 4.63
4813 5760 4.396166 CCAATATGACTTTTCTTGCTCGGT 59.604 41.667 0.00 0.00 0.00 4.69
4815 5762 2.325583 TGACTTTTCTTGCTCGGTGT 57.674 45.000 0.00 0.00 0.00 4.16
4817 5764 3.799366 TGACTTTTCTTGCTCGGTGTTA 58.201 40.909 0.00 0.00 0.00 2.41
4827 5786 1.929836 GCTCGGTGTTAAGCTCATCAG 59.070 52.381 0.00 0.00 35.60 2.90
4847 5806 7.769507 TCATCAGTGTAAGTACCACTAGACTAG 59.230 40.741 8.00 8.00 0.00 2.57
4848 5807 7.013823 TCAGTGTAAGTACCACTAGACTAGT 57.986 40.000 9.45 9.45 40.28 2.57
4849 5808 7.456725 TCAGTGTAAGTACCACTAGACTAGTT 58.543 38.462 12.62 2.35 36.76 2.24
4850 5809 7.941238 TCAGTGTAAGTACCACTAGACTAGTTT 59.059 37.037 12.62 7.02 36.76 2.66
4851 5810 9.224267 CAGTGTAAGTACCACTAGACTAGTTTA 57.776 37.037 12.62 6.09 36.76 2.01
4852 5811 9.972106 AGTGTAAGTACCACTAGACTAGTTTAT 57.028 33.333 12.62 4.15 36.76 1.40
4861 5820 9.145442 ACCACTAGACTAGTTTATAGAATTCCC 57.855 37.037 12.62 0.00 36.76 3.97
4862 5821 9.369672 CCACTAGACTAGTTTATAGAATTCCCT 57.630 37.037 12.62 0.00 36.76 4.20
5040 5999 2.543641 CGCACAGCATATTGAGAGTCA 58.456 47.619 0.00 0.00 0.00 3.41
5041 6000 2.931969 CGCACAGCATATTGAGAGTCAA 59.068 45.455 0.00 0.00 41.09 3.18
5042 6001 6.029541 GCGCACAGCATATTGAGAGTCAAT 62.030 45.833 0.30 7.29 46.21 2.57
5043 6002 4.034858 CGCACAGCATATTGAGAGTCAATT 59.965 41.667 7.43 0.00 44.03 2.32
5044 6003 5.234972 CGCACAGCATATTGAGAGTCAATTA 59.765 40.000 7.43 0.00 44.03 1.40
5045 6004 6.425504 GCACAGCATATTGAGAGTCAATTAC 58.574 40.000 7.43 0.00 44.03 1.89
5046 6005 6.037500 GCACAGCATATTGAGAGTCAATTACA 59.962 38.462 7.43 0.00 44.03 2.41
5047 6006 7.404985 CACAGCATATTGAGAGTCAATTACAC 58.595 38.462 7.43 0.00 44.03 2.90
5048 6007 6.540189 ACAGCATATTGAGAGTCAATTACACC 59.460 38.462 7.43 0.00 44.03 4.16
5049 6008 5.755375 AGCATATTGAGAGTCAATTACACCG 59.245 40.000 7.43 0.00 44.03 4.94
5050 6009 5.559035 GCATATTGAGAGTCAATTACACCGC 60.559 44.000 7.43 0.05 44.03 5.68
5051 6010 3.678056 TTGAGAGTCAATTACACCGCT 57.322 42.857 0.00 0.00 30.26 5.52
5052 6011 2.959516 TGAGAGTCAATTACACCGCTG 58.040 47.619 0.00 0.00 0.00 5.18
5053 6012 2.271800 GAGAGTCAATTACACCGCTGG 58.728 52.381 0.00 0.00 0.00 4.85
5054 6013 1.623811 AGAGTCAATTACACCGCTGGT 59.376 47.619 0.00 0.00 35.62 4.00
5063 6022 2.510906 ACCGCTGGTGCTCAAACT 59.489 55.556 0.00 0.00 32.98 2.66
5064 6023 1.152963 ACCGCTGGTGCTCAAACTT 60.153 52.632 0.00 0.00 32.98 2.66
5065 6024 1.283793 CCGCTGGTGCTCAAACTTG 59.716 57.895 0.00 0.00 36.97 3.16
5066 6025 1.165907 CCGCTGGTGCTCAAACTTGA 61.166 55.000 0.00 0.00 36.97 3.02
5067 6026 0.040958 CGCTGGTGCTCAAACTTGAC 60.041 55.000 0.00 0.00 36.97 3.18
5068 6027 0.040958 GCTGGTGCTCAAACTTGACG 60.041 55.000 0.00 0.00 36.03 4.35
5069 6028 0.040958 CTGGTGCTCAAACTTGACGC 60.041 55.000 6.83 6.83 34.29 5.19
5070 6029 1.082756 GGTGCTCAAACTTGACGCG 60.083 57.895 3.53 3.53 35.52 6.01
5071 6030 1.495584 GGTGCTCAAACTTGACGCGA 61.496 55.000 15.93 0.00 35.52 5.87
5072 6031 0.303493 GTGCTCAAACTTGACGCGAA 59.697 50.000 15.93 0.00 35.52 4.70
5073 6032 1.010580 TGCTCAAACTTGACGCGAAA 58.989 45.000 15.93 5.90 35.52 3.46
5074 6033 1.398739 TGCTCAAACTTGACGCGAAAA 59.601 42.857 15.93 5.47 35.52 2.29
5075 6034 2.159503 TGCTCAAACTTGACGCGAAAAA 60.160 40.909 15.93 2.55 35.52 1.94
5076 6035 3.042887 GCTCAAACTTGACGCGAAAAAT 58.957 40.909 15.93 0.00 32.90 1.82
5077 6036 3.117994 GCTCAAACTTGACGCGAAAAATC 59.882 43.478 15.93 0.00 32.90 2.17
5078 6037 4.278858 CTCAAACTTGACGCGAAAAATCA 58.721 39.130 15.93 1.67 32.90 2.57
5079 6038 4.032355 TCAAACTTGACGCGAAAAATCAC 58.968 39.130 15.93 0.00 31.01 3.06
5080 6039 3.963383 AACTTGACGCGAAAAATCACT 57.037 38.095 15.93 0.00 0.00 3.41
5081 6040 3.963383 ACTTGACGCGAAAAATCACTT 57.037 38.095 15.93 0.00 0.00 3.16
5082 6041 4.287238 ACTTGACGCGAAAAATCACTTT 57.713 36.364 15.93 0.00 0.00 2.66
5083 6042 5.412526 ACTTGACGCGAAAAATCACTTTA 57.587 34.783 15.93 0.00 0.00 1.85
5084 6043 5.440685 ACTTGACGCGAAAAATCACTTTAG 58.559 37.500 15.93 2.22 0.00 1.85
5085 6044 5.007332 ACTTGACGCGAAAAATCACTTTAGT 59.993 36.000 15.93 2.90 0.00 2.24
5086 6045 4.768145 TGACGCGAAAAATCACTTTAGTG 58.232 39.130 15.93 3.47 46.91 2.74
5087 6046 3.551551 ACGCGAAAAATCACTTTAGTGC 58.448 40.909 15.93 0.00 45.25 4.40
5088 6047 2.908626 CGCGAAAAATCACTTTAGTGCC 59.091 45.455 0.00 0.00 45.25 5.01
5089 6048 3.608241 CGCGAAAAATCACTTTAGTGCCA 60.608 43.478 0.00 0.00 45.25 4.92
5090 6049 4.295051 GCGAAAAATCACTTTAGTGCCAA 58.705 39.130 5.00 0.00 45.25 4.52
5091 6050 4.742659 GCGAAAAATCACTTTAGTGCCAAA 59.257 37.500 5.00 0.00 45.25 3.28
5092 6051 5.233263 GCGAAAAATCACTTTAGTGCCAAAA 59.767 36.000 5.00 0.00 45.25 2.44
5093 6052 6.636443 CGAAAAATCACTTTAGTGCCAAAAC 58.364 36.000 5.00 0.00 45.25 2.43
5094 6053 6.475402 CGAAAAATCACTTTAGTGCCAAAACT 59.525 34.615 5.00 0.00 45.25 2.66
5095 6054 7.305993 CGAAAAATCACTTTAGTGCCAAAACTC 60.306 37.037 5.00 0.00 45.25 3.01
5096 6055 4.749245 ATCACTTTAGTGCCAAAACTCG 57.251 40.909 5.00 0.00 45.25 4.18
5097 6056 3.537580 TCACTTTAGTGCCAAAACTCGT 58.462 40.909 5.00 0.00 45.25 4.18
5098 6057 3.311322 TCACTTTAGTGCCAAAACTCGTG 59.689 43.478 5.00 0.00 45.25 4.35
5099 6058 2.616842 ACTTTAGTGCCAAAACTCGTGG 59.383 45.455 0.00 0.00 39.33 4.94
5100 6059 2.623878 TTAGTGCCAAAACTCGTGGA 57.376 45.000 0.00 0.00 38.54 4.02
5101 6060 2.623878 TAGTGCCAAAACTCGTGGAA 57.376 45.000 0.00 0.00 38.54 3.53
5102 6061 1.981256 AGTGCCAAAACTCGTGGAAT 58.019 45.000 0.00 0.00 38.54 3.01
5103 6062 3.134574 AGTGCCAAAACTCGTGGAATA 57.865 42.857 0.00 0.00 38.54 1.75
5104 6063 2.812011 AGTGCCAAAACTCGTGGAATAC 59.188 45.455 0.00 0.00 38.54 1.89
5105 6064 2.550606 GTGCCAAAACTCGTGGAATACA 59.449 45.455 0.00 0.00 38.54 2.29
5106 6065 3.190535 GTGCCAAAACTCGTGGAATACAT 59.809 43.478 0.00 0.00 38.54 2.29
5107 6066 4.393680 GTGCCAAAACTCGTGGAATACATA 59.606 41.667 0.00 0.00 38.54 2.29
5108 6067 5.065988 GTGCCAAAACTCGTGGAATACATAT 59.934 40.000 0.00 0.00 38.54 1.78
5109 6068 6.259167 GTGCCAAAACTCGTGGAATACATATA 59.741 38.462 0.00 0.00 38.54 0.86
5110 6069 6.824196 TGCCAAAACTCGTGGAATACATATAA 59.176 34.615 0.00 0.00 38.54 0.98
5111 6070 7.130269 GCCAAAACTCGTGGAATACATATAAC 58.870 38.462 0.00 0.00 38.54 1.89
5112 6071 7.012044 GCCAAAACTCGTGGAATACATATAACT 59.988 37.037 0.00 0.00 38.54 2.24
5113 6072 8.335356 CCAAAACTCGTGGAATACATATAACTG 58.665 37.037 0.00 0.00 38.54 3.16
5114 6073 8.335356 CAAAACTCGTGGAATACATATAACTGG 58.665 37.037 0.00 0.00 0.00 4.00
5115 6074 6.726490 ACTCGTGGAATACATATAACTGGT 57.274 37.500 0.00 0.00 0.00 4.00
5116 6075 6.513180 ACTCGTGGAATACATATAACTGGTG 58.487 40.000 0.00 0.00 0.00 4.17
5117 6076 5.294356 TCGTGGAATACATATAACTGGTGC 58.706 41.667 0.00 0.00 0.00 5.01
5118 6077 5.069914 TCGTGGAATACATATAACTGGTGCT 59.930 40.000 0.00 0.00 0.00 4.40
5119 6078 6.265876 TCGTGGAATACATATAACTGGTGCTA 59.734 38.462 0.00 0.00 0.00 3.49
5120 6079 6.365247 CGTGGAATACATATAACTGGTGCTAC 59.635 42.308 0.00 0.00 0.00 3.58
5121 6080 7.214381 GTGGAATACATATAACTGGTGCTACA 58.786 38.462 0.00 0.00 0.00 2.74
5122 6081 7.713507 GTGGAATACATATAACTGGTGCTACAA 59.286 37.037 0.00 0.00 0.00 2.41
5123 6082 7.713507 TGGAATACATATAACTGGTGCTACAAC 59.286 37.037 0.00 0.00 0.00 3.32
5124 6083 7.931948 GGAATACATATAACTGGTGCTACAACT 59.068 37.037 0.00 0.00 0.00 3.16
5125 6084 9.326413 GAATACATATAACTGGTGCTACAACTT 57.674 33.333 0.00 0.00 0.00 2.66
5126 6085 6.985188 ACATATAACTGGTGCTACAACTTG 57.015 37.500 0.00 0.00 0.00 3.16
5127 6086 5.880332 ACATATAACTGGTGCTACAACTTGG 59.120 40.000 0.00 0.00 0.00 3.61
5128 6087 1.318576 AACTGGTGCTACAACTTGGC 58.681 50.000 0.00 0.00 0.00 4.52
5129 6088 0.474184 ACTGGTGCTACAACTTGGCT 59.526 50.000 0.00 0.00 0.00 4.75
5130 6089 1.133792 ACTGGTGCTACAACTTGGCTT 60.134 47.619 0.00 0.00 0.00 4.35
5131 6090 1.956477 CTGGTGCTACAACTTGGCTTT 59.044 47.619 0.00 0.00 0.00 3.51
5132 6091 1.680735 TGGTGCTACAACTTGGCTTTG 59.319 47.619 0.00 0.00 0.00 2.77
5133 6092 1.000274 GGTGCTACAACTTGGCTTTGG 60.000 52.381 0.00 0.00 0.00 3.28
5134 6093 0.673437 TGCTACAACTTGGCTTTGGC 59.327 50.000 0.00 0.00 37.82 4.52
5135 6094 0.387239 GCTACAACTTGGCTTTGGCG 60.387 55.000 0.00 0.00 39.81 5.69
5136 6095 0.951558 CTACAACTTGGCTTTGGCGT 59.048 50.000 0.00 0.00 39.81 5.68
5137 6096 0.665835 TACAACTTGGCTTTGGCGTG 59.334 50.000 0.00 0.00 39.81 5.34
5138 6097 1.950630 CAACTTGGCTTTGGCGTGC 60.951 57.895 0.00 0.00 39.81 5.34
5139 6098 2.422231 AACTTGGCTTTGGCGTGCA 61.422 52.632 0.00 0.00 39.81 4.57
5140 6099 1.747325 AACTTGGCTTTGGCGTGCAT 61.747 50.000 0.00 0.00 39.81 3.96
5141 6100 0.893270 ACTTGGCTTTGGCGTGCATA 60.893 50.000 0.00 0.00 39.81 3.14
5142 6101 0.457035 CTTGGCTTTGGCGTGCATAT 59.543 50.000 0.00 0.00 39.81 1.78
5143 6102 1.675483 CTTGGCTTTGGCGTGCATATA 59.325 47.619 0.00 0.00 39.81 0.86
5144 6103 1.021202 TGGCTTTGGCGTGCATATAC 58.979 50.000 0.00 0.00 39.81 1.47
5145 6104 1.021202 GGCTTTGGCGTGCATATACA 58.979 50.000 0.00 0.00 39.81 2.29
5146 6105 1.002468 GGCTTTGGCGTGCATATACAG 60.002 52.381 0.00 0.00 39.81 2.74
5147 6106 1.670811 GCTTTGGCGTGCATATACAGT 59.329 47.619 0.00 0.00 0.00 3.55
5148 6107 2.539547 GCTTTGGCGTGCATATACAGTG 60.540 50.000 0.00 0.00 0.00 3.66
5149 6108 1.013596 TTGGCGTGCATATACAGTGC 58.986 50.000 0.00 0.00 42.81 4.40
5172 6131 6.583912 CAAATCACGTTTGTATACGGAGAT 57.416 37.500 0.00 0.00 45.44 2.75
5173 6132 6.410845 CAAATCACGTTTGTATACGGAGATG 58.589 40.000 0.00 0.00 45.44 2.90
5174 6133 4.968812 TCACGTTTGTATACGGAGATGA 57.031 40.909 0.00 0.00 45.44 2.92
5175 6134 5.509716 TCACGTTTGTATACGGAGATGAT 57.490 39.130 0.00 0.00 45.44 2.45
5176 6135 5.278604 TCACGTTTGTATACGGAGATGATG 58.721 41.667 0.00 0.00 45.44 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.144120 CTGACATCGCCCTCCTCCG 62.144 68.421 0.00 0.00 0.00 4.63
104 106 2.676471 GGAAACGCCTGCATGGGT 60.676 61.111 5.86 5.86 36.00 4.51
229 235 1.407656 TTATAGCGGCTGGTCCAGGG 61.408 60.000 20.72 0.00 34.01 4.45
324 340 2.480037 TCCACCGCAGTATACGTATACG 59.520 50.000 30.35 25.92 42.51 3.06
325 341 3.499918 ACTCCACCGCAGTATACGTATAC 59.500 47.826 30.07 30.07 39.01 1.47
326 342 3.743521 ACTCCACCGCAGTATACGTATA 58.256 45.455 11.27 11.27 0.00 1.47
327 343 2.579873 ACTCCACCGCAGTATACGTAT 58.420 47.619 13.54 13.54 0.00 3.06
329 345 1.180029 AACTCCACCGCAGTATACGT 58.820 50.000 0.00 0.00 0.00 3.57
330 346 1.924524 CAAACTCCACCGCAGTATACG 59.075 52.381 0.00 0.00 0.00 3.06
332 348 1.903860 ACCAAACTCCACCGCAGTATA 59.096 47.619 0.00 0.00 0.00 1.47
333 349 0.690762 ACCAAACTCCACCGCAGTAT 59.309 50.000 0.00 0.00 0.00 2.12
334 350 0.470766 AACCAAACTCCACCGCAGTA 59.529 50.000 0.00 0.00 0.00 2.74
335 351 1.101049 CAACCAAACTCCACCGCAGT 61.101 55.000 0.00 0.00 0.00 4.40
336 352 1.654220 CAACCAAACTCCACCGCAG 59.346 57.895 0.00 0.00 0.00 5.18
337 353 2.485795 GCAACCAAACTCCACCGCA 61.486 57.895 0.00 0.00 0.00 5.69
338 354 2.335011 GCAACCAAACTCCACCGC 59.665 61.111 0.00 0.00 0.00 5.68
339 355 2.637025 CGCAACCAAACTCCACCG 59.363 61.111 0.00 0.00 0.00 4.94
340 356 1.734388 AAGCGCAACCAAACTCCACC 61.734 55.000 11.47 0.00 0.00 4.61
341 357 0.317854 GAAGCGCAACCAAACTCCAC 60.318 55.000 11.47 0.00 0.00 4.02
342 358 1.781025 CGAAGCGCAACCAAACTCCA 61.781 55.000 11.47 0.00 0.00 3.86
344 360 1.082104 CCGAAGCGCAACCAAACTC 60.082 57.895 11.47 0.00 0.00 3.01
359 379 1.192146 CCTCTCCCACCAAGAACCGA 61.192 60.000 0.00 0.00 0.00 4.69
360 380 1.296715 CCTCTCCCACCAAGAACCG 59.703 63.158 0.00 0.00 0.00 4.44
402 454 5.534654 GTGCCTCTACTGATTGATCTCTAGT 59.465 44.000 0.00 0.00 0.00 2.57
403 455 5.048083 GGTGCCTCTACTGATTGATCTCTAG 60.048 48.000 0.00 0.00 0.00 2.43
404 456 4.830046 GGTGCCTCTACTGATTGATCTCTA 59.170 45.833 0.00 0.00 0.00 2.43
405 457 3.640967 GGTGCCTCTACTGATTGATCTCT 59.359 47.826 0.00 0.00 0.00 3.10
480 532 1.488393 AGCTAAGCTAGGCAAAGGAGG 59.512 52.381 12.34 0.00 36.99 4.30
495 547 3.117663 GGAGGAGAGAGAGAGGAAGCTAA 60.118 52.174 0.00 0.00 0.00 3.09
496 548 2.441750 GGAGGAGAGAGAGAGGAAGCTA 59.558 54.545 0.00 0.00 0.00 3.32
510 562 2.874245 TGAGGGGGTGGGAGGAGA 60.874 66.667 0.00 0.00 0.00 3.71
511 563 2.689034 GTGAGGGGGTGGGAGGAG 60.689 72.222 0.00 0.00 0.00 3.69
512 564 4.348495 GGTGAGGGGGTGGGAGGA 62.348 72.222 0.00 0.00 0.00 3.71
515 567 4.348495 GAGGGTGAGGGGGTGGGA 62.348 72.222 0.00 0.00 0.00 4.37
516 568 4.354943 AGAGGGTGAGGGGGTGGG 62.355 72.222 0.00 0.00 0.00 4.61
517 569 2.689034 GAGAGGGTGAGGGGGTGG 60.689 72.222 0.00 0.00 0.00 4.61
518 570 0.842467 AAAGAGAGGGTGAGGGGGTG 60.842 60.000 0.00 0.00 0.00 4.61
519 571 0.547954 GAAAGAGAGGGTGAGGGGGT 60.548 60.000 0.00 0.00 0.00 4.95
520 572 0.252927 AGAAAGAGAGGGTGAGGGGG 60.253 60.000 0.00 0.00 0.00 5.40
521 573 1.662686 AAGAAAGAGAGGGTGAGGGG 58.337 55.000 0.00 0.00 0.00 4.79
522 574 3.055747 GTGTAAGAAAGAGAGGGTGAGGG 60.056 52.174 0.00 0.00 0.00 4.30
523 575 3.835395 AGTGTAAGAAAGAGAGGGTGAGG 59.165 47.826 0.00 0.00 0.00 3.86
524 576 4.770010 AGAGTGTAAGAAAGAGAGGGTGAG 59.230 45.833 0.00 0.00 0.00 3.51
525 577 4.742012 AGAGTGTAAGAAAGAGAGGGTGA 58.258 43.478 0.00 0.00 0.00 4.02
526 578 5.476091 AAGAGTGTAAGAAAGAGAGGGTG 57.524 43.478 0.00 0.00 0.00 4.61
527 579 5.221742 CCAAAGAGTGTAAGAAAGAGAGGGT 60.222 44.000 0.00 0.00 0.00 4.34
528 580 5.241662 CCAAAGAGTGTAAGAAAGAGAGGG 58.758 45.833 0.00 0.00 0.00 4.30
529 581 5.241662 CCCAAAGAGTGTAAGAAAGAGAGG 58.758 45.833 0.00 0.00 0.00 3.69
530 582 4.693095 GCCCAAAGAGTGTAAGAAAGAGAG 59.307 45.833 0.00 0.00 0.00 3.20
531 583 4.505039 GGCCCAAAGAGTGTAAGAAAGAGA 60.505 45.833 0.00 0.00 0.00 3.10
532 584 3.753797 GGCCCAAAGAGTGTAAGAAAGAG 59.246 47.826 0.00 0.00 0.00 2.85
807 878 4.503910 GAATTAATTGTGGTTTCTGGGCC 58.496 43.478 5.17 0.00 0.00 5.80
842 913 0.397816 ATCGAGAGGGGGAAGGACTG 60.398 60.000 0.00 0.00 0.00 3.51
849 920 1.762460 GGAGCAATCGAGAGGGGGA 60.762 63.158 0.00 0.00 0.00 4.81
909 980 1.372087 CCAAGCTAGCAAGGAAGGCG 61.372 60.000 18.83 0.00 36.08 5.52
965 1038 3.775654 CACCACGGCCTCTCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
966 1039 4.459089 GCACCACGGCCTCTCCTC 62.459 72.222 0.00 0.00 0.00 3.71
1014 1087 3.569210 CCCTGGTGGTGGTGCTGA 61.569 66.667 0.00 0.00 0.00 4.26
1037 1110 4.509737 GCGCCCCGTACTGAGACC 62.510 72.222 0.00 0.00 0.00 3.85
1144 1232 2.510238 GTAGCTCGGCTGTGGCTG 60.510 66.667 20.16 0.00 45.61 4.85
1146 1234 3.642778 TTCGTAGCTCGGCTGTGGC 62.643 63.158 8.44 5.38 40.10 5.01
1149 1237 1.213013 CTGTTCGTAGCTCGGCTGT 59.787 57.895 8.44 0.00 40.10 4.40
1386 1486 8.124199 CAGTACCGAGTAGAATTTTACTCTCTC 58.876 40.741 25.39 16.09 44.71 3.20
1394 1494 9.159364 GGAAATTACAGTACCGAGTAGAATTTT 57.841 33.333 0.00 0.00 0.00 1.82
1396 1496 7.763071 GTGGAAATTACAGTACCGAGTAGAATT 59.237 37.037 0.00 0.00 0.00 2.17
1398 1498 6.209192 TGTGGAAATTACAGTACCGAGTAGAA 59.791 38.462 0.00 0.00 0.00 2.10
1399 1499 5.711506 TGTGGAAATTACAGTACCGAGTAGA 59.288 40.000 0.00 0.00 0.00 2.59
1400 1500 5.803967 GTGTGGAAATTACAGTACCGAGTAG 59.196 44.000 0.00 0.00 0.00 2.57
1403 1503 3.611113 CGTGTGGAAATTACAGTACCGAG 59.389 47.826 0.00 0.00 0.00 4.63
1404 1504 3.577667 CGTGTGGAAATTACAGTACCGA 58.422 45.455 0.00 0.00 0.00 4.69
1405 1505 2.093152 GCGTGTGGAAATTACAGTACCG 59.907 50.000 0.00 0.00 0.00 4.02
1406 1506 3.068560 TGCGTGTGGAAATTACAGTACC 58.931 45.455 0.00 0.00 0.00 3.34
1407 1507 4.939509 ATGCGTGTGGAAATTACAGTAC 57.060 40.909 0.00 0.00 0.00 2.73
1408 1508 5.390040 CGAAATGCGTGTGGAAATTACAGTA 60.390 40.000 0.00 0.00 34.64 2.74
1411 1512 3.816091 CGAAATGCGTGTGGAAATTACA 58.184 40.909 0.00 0.00 34.64 2.41
1458 1559 1.439353 CGACGGGAAATCATGCCCAG 61.439 60.000 6.89 2.73 44.94 4.45
1482 1590 2.739671 ACGAAACCGTTAGCCGCC 60.740 61.111 0.00 0.00 36.84 6.13
1560 1678 0.096454 GAATCGCTGGCGGTAACAAC 59.904 55.000 14.94 0.00 40.25 3.32
1572 1693 0.249489 CGAATTCGAGGGGAATCGCT 60.249 55.000 23.29 0.00 44.59 4.93
1580 1701 1.130561 GGAAAACTGCGAATTCGAGGG 59.869 52.381 31.01 19.82 43.02 4.30
1590 1711 1.602920 GGAAAGGCAAGGAAAACTGCG 60.603 52.381 0.00 0.00 0.00 5.18
1591 1712 1.688735 AGGAAAGGCAAGGAAAACTGC 59.311 47.619 0.00 0.00 0.00 4.40
1631 1752 3.311110 AGCCGCTGAAACCGAGGA 61.311 61.111 0.00 0.00 0.00 3.71
1646 1767 2.762875 ACCCTACGCCTACCCAGC 60.763 66.667 0.00 0.00 0.00 4.85
1647 1768 2.432300 CCACCCTACGCCTACCCAG 61.432 68.421 0.00 0.00 0.00 4.45
1648 1769 2.364579 CCACCCTACGCCTACCCA 60.365 66.667 0.00 0.00 0.00 4.51
1649 1770 2.364710 ACCACCCTACGCCTACCC 60.365 66.667 0.00 0.00 0.00 3.69
1666 1807 1.839994 CAGGAGCCCAGATTCTTACCA 59.160 52.381 0.00 0.00 0.00 3.25
1841 1991 4.061131 AGGGGAGGGAAATAAACAAAGG 57.939 45.455 0.00 0.00 0.00 3.11
1842 1992 4.466370 GGAAGGGGAGGGAAATAAACAAAG 59.534 45.833 0.00 0.00 0.00 2.77
1843 1993 4.422057 GGAAGGGGAGGGAAATAAACAAA 58.578 43.478 0.00 0.00 0.00 2.83
1844 1994 3.245839 GGGAAGGGGAGGGAAATAAACAA 60.246 47.826 0.00 0.00 0.00 2.83
1862 2012 3.075283 TGGCAGTAGAAAAATGAGGGGAA 59.925 43.478 0.00 0.00 0.00 3.97
1863 2013 2.647299 TGGCAGTAGAAAAATGAGGGGA 59.353 45.455 0.00 0.00 0.00 4.81
1864 2014 3.085952 TGGCAGTAGAAAAATGAGGGG 57.914 47.619 0.00 0.00 0.00 4.79
1865 2015 3.633986 GGATGGCAGTAGAAAAATGAGGG 59.366 47.826 0.00 0.00 0.00 4.30
1866 2016 4.096984 GTGGATGGCAGTAGAAAAATGAGG 59.903 45.833 0.00 0.00 0.00 3.86
1867 2017 4.946157 AGTGGATGGCAGTAGAAAAATGAG 59.054 41.667 0.00 0.00 0.00 2.90
1868 2018 4.922206 AGTGGATGGCAGTAGAAAAATGA 58.078 39.130 0.00 0.00 0.00 2.57
1869 2019 5.183713 TGAAGTGGATGGCAGTAGAAAAATG 59.816 40.000 0.00 0.00 0.00 2.32
1887 2037 3.549794 GGATGAGAGGGGAATTGAAGTG 58.450 50.000 0.00 0.00 0.00 3.16
1888 2038 2.511637 GGGATGAGAGGGGAATTGAAGT 59.488 50.000 0.00 0.00 0.00 3.01
1911 2063 1.305930 GCGGGCCATCTCGTCTTTTT 61.306 55.000 4.39 0.00 0.00 1.94
1928 2080 3.875134 AGAATGGGAATTAGTTAACCGCG 59.125 43.478 0.00 0.00 0.00 6.46
1960 2112 1.630878 GAGAGAGGGCAAGGAAGGAAA 59.369 52.381 0.00 0.00 0.00 3.13
1970 2122 0.681564 GAAGGACGAGAGAGAGGGCA 60.682 60.000 0.00 0.00 0.00 5.36
2036 2190 2.604046 AGAAGCTTCGAGTGTGTGTT 57.396 45.000 20.43 0.00 0.00 3.32
2045 2199 2.494073 GAGGAGGAAGAAGAAGCTTCGA 59.506 50.000 20.43 0.00 44.04 3.71
2114 2289 6.373005 TCAATCTATCAACCAAAGGACTGA 57.627 37.500 0.00 0.00 0.00 3.41
2131 2306 8.136165 GTGGTACGTACTAGAATCAATCAATCT 58.864 37.037 24.07 0.00 0.00 2.40
2141 2316 3.728864 CGTTGCGTGGTACGTACTAGAAT 60.729 47.826 24.07 0.00 44.73 2.40
2144 2319 1.527696 CGTTGCGTGGTACGTACTAG 58.472 55.000 24.07 16.11 44.73 2.57
2147 2322 2.765150 GCGTTGCGTGGTACGTAC 59.235 61.111 17.56 17.56 44.73 3.67
2193 2368 2.681848 CGCAAGCTTCCTGAGATCAAAT 59.318 45.455 0.00 0.00 0.00 2.32
2454 2645 2.898840 ATTGCGCTCATCGGCTGG 60.899 61.111 9.73 0.00 38.94 4.85
2531 2801 2.764128 GATGGGGAGGCTCCACGA 60.764 66.667 33.27 21.14 45.00 4.35
2552 2822 2.281970 CTTGCAGGCTGACAGGCA 60.282 61.111 28.64 15.29 44.19 4.75
2943 3267 2.213513 TGGGACATGCACGGTCTGA 61.214 57.895 17.10 4.63 35.61 3.27
3009 3408 1.599797 CCGAGGTTTCTTTGGCGGT 60.600 57.895 0.00 0.00 34.45 5.68
3088 3562 4.431131 AGCTGGGATGGGTTGCGG 62.431 66.667 0.00 0.00 0.00 5.69
3089 3563 3.136123 CAGCTGGGATGGGTTGCG 61.136 66.667 5.57 0.00 0.00 4.85
3090 3564 3.455469 GCAGCTGGGATGGGTTGC 61.455 66.667 17.12 0.00 33.16 4.17
3091 3565 3.136123 CGCAGCTGGGATGGGTTG 61.136 66.667 25.55 0.00 0.00 3.77
4242 4827 0.536724 CTCGGTGATGGTGATGGTGA 59.463 55.000 0.00 0.00 0.00 4.02
4661 5271 1.618343 CTTGCAGGTAAAACAAGGGGG 59.382 52.381 0.00 0.00 37.68 5.40
4662 5272 2.316108 ACTTGCAGGTAAAACAAGGGG 58.684 47.619 0.00 0.00 44.01 4.79
4663 5273 6.827586 TTATACTTGCAGGTAAAACAAGGG 57.172 37.500 13.14 0.00 44.01 3.95
4664 5274 8.303876 ACATTTATACTTGCAGGTAAAACAAGG 58.696 33.333 13.14 7.61 44.01 3.61
4665 5275 9.691362 AACATTTATACTTGCAGGTAAAACAAG 57.309 29.630 13.14 10.19 44.98 3.16
4666 5276 9.469807 CAACATTTATACTTGCAGGTAAAACAA 57.530 29.630 13.14 4.22 0.00 2.83
4667 5277 8.634444 ACAACATTTATACTTGCAGGTAAAACA 58.366 29.630 13.14 0.00 0.00 2.83
4668 5278 9.471084 AACAACATTTATACTTGCAGGTAAAAC 57.529 29.630 13.14 0.00 0.00 2.43
4671 5281 9.286170 TGTAACAACATTTATACTTGCAGGTAA 57.714 29.630 13.14 0.00 0.00 2.85
4672 5282 8.850007 TGTAACAACATTTATACTTGCAGGTA 57.150 30.769 11.46 11.46 0.00 3.08
4673 5283 7.447238 ACTGTAACAACATTTATACTTGCAGGT 59.553 33.333 6.72 6.72 0.00 4.00
4674 5284 7.750458 CACTGTAACAACATTTATACTTGCAGG 59.250 37.037 0.00 0.00 0.00 4.85
4675 5285 8.289618 ACACTGTAACAACATTTATACTTGCAG 58.710 33.333 0.00 0.00 0.00 4.41
4676 5286 8.160521 ACACTGTAACAACATTTATACTTGCA 57.839 30.769 0.00 0.00 0.00 4.08
4707 5601 8.088365 TGGGAACATATGATCGAATAACTACAG 58.912 37.037 10.38 0.00 33.40 2.74
4731 5661 7.925483 TCTCTACAATGAAAACCAAAAACATGG 59.075 33.333 0.00 0.00 46.38 3.66
4778 5712 8.831715 AAAAGTCATATTGGCAAGGTAAAAAG 57.168 30.769 5.96 0.00 0.00 2.27
4807 5754 1.929836 CTGATGAGCTTAACACCGAGC 59.070 52.381 0.00 0.00 39.17 5.03
4808 5755 2.926200 CACTGATGAGCTTAACACCGAG 59.074 50.000 0.00 0.00 0.00 4.63
4809 5756 2.299013 ACACTGATGAGCTTAACACCGA 59.701 45.455 0.00 0.00 0.00 4.69
4811 5758 5.238583 ACTTACACTGATGAGCTTAACACC 58.761 41.667 0.00 0.00 0.00 4.16
4812 5759 6.310711 GGTACTTACACTGATGAGCTTAACAC 59.689 42.308 0.00 0.00 0.00 3.32
4813 5760 6.014925 TGGTACTTACACTGATGAGCTTAACA 60.015 38.462 0.00 0.00 0.00 2.41
4815 5762 6.210784 AGTGGTACTTACACTGATGAGCTTAA 59.789 38.462 2.86 0.00 46.67 1.85
4817 5764 4.528596 AGTGGTACTTACACTGATGAGCTT 59.471 41.667 2.86 0.00 46.67 3.74
5019 5978 1.260033 GACTCTCAATATGCTGTGCGC 59.740 52.381 0.00 0.00 39.77 6.09
5020 5979 2.543641 TGACTCTCAATATGCTGTGCG 58.456 47.619 0.00 0.00 0.00 5.34
5021 5980 5.496133 AATTGACTCTCAATATGCTGTGC 57.504 39.130 0.00 0.00 45.57 4.57
5022 5981 7.404985 GTGTAATTGACTCTCAATATGCTGTG 58.595 38.462 0.00 0.00 45.57 3.66
5023 5982 6.540189 GGTGTAATTGACTCTCAATATGCTGT 59.460 38.462 0.00 0.00 45.57 4.40
5024 5983 6.292542 CGGTGTAATTGACTCTCAATATGCTG 60.293 42.308 0.00 0.00 45.57 4.41
5025 5984 5.755375 CGGTGTAATTGACTCTCAATATGCT 59.245 40.000 0.00 0.00 45.57 3.79
5026 5985 5.559035 GCGGTGTAATTGACTCTCAATATGC 60.559 44.000 0.00 0.00 45.57 3.14
5027 5986 5.755375 AGCGGTGTAATTGACTCTCAATATG 59.245 40.000 0.00 0.00 45.57 1.78
5028 5987 5.755375 CAGCGGTGTAATTGACTCTCAATAT 59.245 40.000 6.41 0.00 45.57 1.28
5029 5988 5.109210 CAGCGGTGTAATTGACTCTCAATA 58.891 41.667 6.41 0.00 45.57 1.90
5030 5989 7.544229 ACCAGCGGTGTAATTGACTCTCAAT 62.544 44.000 14.40 0.00 40.82 2.57
5031 5990 3.325870 CAGCGGTGTAATTGACTCTCAA 58.674 45.455 6.41 0.00 41.09 3.02
5032 5991 2.353704 CCAGCGGTGTAATTGACTCTCA 60.354 50.000 14.40 0.00 0.00 3.27
5033 5992 2.271800 CCAGCGGTGTAATTGACTCTC 58.728 52.381 14.40 0.00 0.00 3.20
5034 5993 1.623811 ACCAGCGGTGTAATTGACTCT 59.376 47.619 14.40 0.00 32.98 3.24
5035 5994 2.094762 ACCAGCGGTGTAATTGACTC 57.905 50.000 14.40 0.00 32.98 3.36
5049 6008 0.040958 CGTCAAGTTTGAGCACCAGC 60.041 55.000 0.00 0.00 37.98 4.85
5050 6009 0.040958 GCGTCAAGTTTGAGCACCAG 60.041 55.000 0.00 0.00 37.98 4.00
5051 6010 1.771073 CGCGTCAAGTTTGAGCACCA 61.771 55.000 0.00 0.00 37.98 4.17
5052 6011 1.082756 CGCGTCAAGTTTGAGCACC 60.083 57.895 0.00 0.00 37.98 5.01
5053 6012 0.303493 TTCGCGTCAAGTTTGAGCAC 59.697 50.000 5.77 0.00 37.98 4.40
5054 6013 1.010580 TTTCGCGTCAAGTTTGAGCA 58.989 45.000 5.77 0.00 37.98 4.26
5055 6014 2.099633 TTTTCGCGTCAAGTTTGAGC 57.900 45.000 5.77 1.41 37.98 4.26
5056 6015 4.144731 GTGATTTTTCGCGTCAAGTTTGAG 59.855 41.667 5.77 0.00 37.98 3.02
5057 6016 4.032355 GTGATTTTTCGCGTCAAGTTTGA 58.968 39.130 5.77 0.00 34.20 2.69
5058 6017 4.035017 AGTGATTTTTCGCGTCAAGTTTG 58.965 39.130 5.77 0.00 0.00 2.93
5059 6018 4.287238 AGTGATTTTTCGCGTCAAGTTT 57.713 36.364 5.77 0.00 0.00 2.66
5060 6019 3.963383 AGTGATTTTTCGCGTCAAGTT 57.037 38.095 5.77 0.00 0.00 2.66
5061 6020 3.963383 AAGTGATTTTTCGCGTCAAGT 57.037 38.095 5.77 0.00 0.00 3.16
5062 6021 5.440685 ACTAAAGTGATTTTTCGCGTCAAG 58.559 37.500 5.77 0.00 0.00 3.02
5063 6022 5.412526 ACTAAAGTGATTTTTCGCGTCAA 57.587 34.783 5.77 0.00 0.00 3.18
5078 6037 2.616842 CCACGAGTTTTGGCACTAAAGT 59.383 45.455 0.00 0.00 0.00 2.66
5079 6038 2.875933 TCCACGAGTTTTGGCACTAAAG 59.124 45.455 0.00 0.00 33.71 1.85
5080 6039 2.920524 TCCACGAGTTTTGGCACTAAA 58.079 42.857 0.00 0.00 33.71 1.85
5081 6040 2.623878 TCCACGAGTTTTGGCACTAA 57.376 45.000 0.00 0.00 33.71 2.24
5082 6041 2.623878 TTCCACGAGTTTTGGCACTA 57.376 45.000 0.00 0.00 33.71 2.74
5083 6042 1.981256 ATTCCACGAGTTTTGGCACT 58.019 45.000 0.00 0.00 33.71 4.40
5084 6043 2.550606 TGTATTCCACGAGTTTTGGCAC 59.449 45.455 0.00 0.00 33.71 5.01
5085 6044 2.852449 TGTATTCCACGAGTTTTGGCA 58.148 42.857 0.00 0.00 33.71 4.92
5086 6045 5.751243 ATATGTATTCCACGAGTTTTGGC 57.249 39.130 0.00 0.00 33.71 4.52
5087 6046 8.335356 CAGTTATATGTATTCCACGAGTTTTGG 58.665 37.037 0.00 0.00 35.18 3.28
5088 6047 8.335356 CCAGTTATATGTATTCCACGAGTTTTG 58.665 37.037 0.00 0.00 0.00 2.44
5089 6048 8.044908 ACCAGTTATATGTATTCCACGAGTTTT 58.955 33.333 0.00 0.00 0.00 2.43
5090 6049 7.494625 CACCAGTTATATGTATTCCACGAGTTT 59.505 37.037 0.00 0.00 0.00 2.66
5091 6050 6.984474 CACCAGTTATATGTATTCCACGAGTT 59.016 38.462 0.00 0.00 0.00 3.01
5092 6051 6.513180 CACCAGTTATATGTATTCCACGAGT 58.487 40.000 0.00 0.00 0.00 4.18
5093 6052 5.405571 GCACCAGTTATATGTATTCCACGAG 59.594 44.000 0.00 0.00 0.00 4.18
5094 6053 5.069914 AGCACCAGTTATATGTATTCCACGA 59.930 40.000 0.00 0.00 0.00 4.35
5095 6054 5.297547 AGCACCAGTTATATGTATTCCACG 58.702 41.667 0.00 0.00 0.00 4.94
5096 6055 7.214381 TGTAGCACCAGTTATATGTATTCCAC 58.786 38.462 0.00 0.00 0.00 4.02
5097 6056 7.368198 TGTAGCACCAGTTATATGTATTCCA 57.632 36.000 0.00 0.00 0.00 3.53
5098 6057 7.931948 AGTTGTAGCACCAGTTATATGTATTCC 59.068 37.037 0.00 0.00 0.00 3.01
5099 6058 8.888579 AGTTGTAGCACCAGTTATATGTATTC 57.111 34.615 0.00 0.00 0.00 1.75
5100 6059 9.109393 CAAGTTGTAGCACCAGTTATATGTATT 57.891 33.333 0.00 0.00 0.00 1.89
5101 6060 7.715249 CCAAGTTGTAGCACCAGTTATATGTAT 59.285 37.037 1.45 0.00 0.00 2.29
5102 6061 7.045416 CCAAGTTGTAGCACCAGTTATATGTA 58.955 38.462 1.45 0.00 0.00 2.29
5103 6062 5.880332 CCAAGTTGTAGCACCAGTTATATGT 59.120 40.000 1.45 0.00 0.00 2.29
5104 6063 5.220854 GCCAAGTTGTAGCACCAGTTATATG 60.221 44.000 1.45 0.00 0.00 1.78
5105 6064 4.881850 GCCAAGTTGTAGCACCAGTTATAT 59.118 41.667 1.45 0.00 0.00 0.86
5106 6065 4.019681 AGCCAAGTTGTAGCACCAGTTATA 60.020 41.667 1.45 0.00 0.00 0.98
5107 6066 3.081804 GCCAAGTTGTAGCACCAGTTAT 58.918 45.455 1.45 0.00 0.00 1.89
5108 6067 2.105821 AGCCAAGTTGTAGCACCAGTTA 59.894 45.455 1.45 0.00 0.00 2.24
5109 6068 1.133792 AGCCAAGTTGTAGCACCAGTT 60.134 47.619 1.45 0.00 0.00 3.16
5110 6069 0.474184 AGCCAAGTTGTAGCACCAGT 59.526 50.000 1.45 0.00 0.00 4.00
5111 6070 1.609208 AAGCCAAGTTGTAGCACCAG 58.391 50.000 1.45 0.00 0.00 4.00
5112 6071 1.680735 CAAAGCCAAGTTGTAGCACCA 59.319 47.619 1.45 0.00 0.00 4.17
5113 6072 1.000274 CCAAAGCCAAGTTGTAGCACC 60.000 52.381 1.45 0.00 0.00 5.01
5114 6073 1.602920 GCCAAAGCCAAGTTGTAGCAC 60.603 52.381 1.45 0.00 0.00 4.40
5115 6074 0.673437 GCCAAAGCCAAGTTGTAGCA 59.327 50.000 1.45 0.00 0.00 3.49
5116 6075 0.387239 CGCCAAAGCCAAGTTGTAGC 60.387 55.000 1.45 0.00 34.57 3.58
5117 6076 0.951558 ACGCCAAAGCCAAGTTGTAG 59.048 50.000 1.45 0.00 34.57 2.74
5118 6077 0.665835 CACGCCAAAGCCAAGTTGTA 59.334 50.000 1.45 0.00 34.57 2.41
5119 6078 1.437160 CACGCCAAAGCCAAGTTGT 59.563 52.632 1.45 0.00 34.57 3.32
5120 6079 1.950630 GCACGCCAAAGCCAAGTTG 60.951 57.895 0.00 0.00 34.57 3.16
5121 6080 1.747325 ATGCACGCCAAAGCCAAGTT 61.747 50.000 0.00 0.00 34.57 2.66
5122 6081 0.893270 TATGCACGCCAAAGCCAAGT 60.893 50.000 0.00 0.00 34.57 3.16
5123 6082 0.457035 ATATGCACGCCAAAGCCAAG 59.543 50.000 0.00 0.00 34.57 3.61
5124 6083 1.403679 GTATATGCACGCCAAAGCCAA 59.596 47.619 0.00 0.00 34.57 4.52
5125 6084 1.021202 GTATATGCACGCCAAAGCCA 58.979 50.000 0.00 0.00 34.57 4.75
5126 6085 1.002468 CTGTATATGCACGCCAAAGCC 60.002 52.381 0.00 0.00 34.57 4.35
5127 6086 1.670811 ACTGTATATGCACGCCAAAGC 59.329 47.619 0.00 0.00 0.00 3.51
5128 6087 2.539547 GCACTGTATATGCACGCCAAAG 60.540 50.000 0.00 0.00 42.88 2.77
5129 6088 1.400142 GCACTGTATATGCACGCCAAA 59.600 47.619 0.00 0.00 42.88 3.28
5130 6089 1.013596 GCACTGTATATGCACGCCAA 58.986 50.000 0.00 0.00 42.88 4.52
5131 6090 2.689083 GCACTGTATATGCACGCCA 58.311 52.632 0.00 0.00 42.88 5.69
5137 6096 4.536364 ACGTGATTTGCACTGTATATGC 57.464 40.909 0.00 0.00 45.49 3.14
5138 6097 6.779385 CAAACGTGATTTGCACTGTATATG 57.221 37.500 0.00 0.00 45.49 1.78
5150 6109 6.334989 TCATCTCCGTATACAAACGTGATTT 58.665 36.000 3.32 0.00 41.27 2.17
5151 6110 5.898174 TCATCTCCGTATACAAACGTGATT 58.102 37.500 3.32 0.00 41.27 2.57
5152 6111 5.509716 TCATCTCCGTATACAAACGTGAT 57.490 39.130 3.32 0.00 41.27 3.06
5153 6112 4.968812 TCATCTCCGTATACAAACGTGA 57.031 40.909 3.32 0.00 41.27 4.35
5154 6113 5.561199 CATCATCTCCGTATACAAACGTG 57.439 43.478 3.32 0.00 41.27 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.