Multiple sequence alignment - TraesCS2B01G406700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G406700 chr2B 100.000 3779 0 0 1 3779 575933789 575937567 0.000000e+00 6979.0
1 TraesCS2B01G406700 chr2B 92.910 268 19 0 3150 3417 64187031 64186764 1.270000e-104 390.0
2 TraesCS2B01G406700 chr2B 79.759 415 69 10 1495 1902 546817788 546818194 1.720000e-73 287.0
3 TraesCS2B01G406700 chr2B 83.498 303 50 0 2483 2785 655294957 655294655 2.220000e-72 283.0
4 TraesCS2B01G406700 chr2B 80.952 294 53 3 1494 1786 547350525 547350234 2.940000e-56 230.0
5 TraesCS2B01G406700 chr2B 81.882 287 36 8 1 277 337077577 337077857 1.060000e-55 228.0
6 TraesCS2B01G406700 chr2B 82.297 209 24 5 75 278 489386420 489386620 6.490000e-38 169.0
7 TraesCS2B01G406700 chr2D 96.095 1639 51 5 1495 3125 491499566 491501199 0.000000e+00 2660.0
8 TraesCS2B01G406700 chr2D 90.977 1075 61 23 429 1495 491498488 491499534 0.000000e+00 1415.0
9 TraesCS2B01G406700 chr2D 90.282 319 23 4 3415 3732 491501216 491501527 9.770000e-111 411.0
10 TraesCS2B01G406700 chr2D 88.923 325 32 2 3 326 491497719 491498040 7.610000e-107 398.0
11 TraesCS2B01G406700 chr2D 80.271 517 74 13 2528 3036 548267030 548266534 7.710000e-97 364.0
12 TraesCS2B01G406700 chr2D 78.788 594 83 25 2451 3036 468749969 468750527 3.590000e-95 359.0
13 TraesCS2B01G406700 chr2D 79.704 473 77 11 2328 2787 469103332 469102866 1.310000e-84 324.0
14 TraesCS2B01G406700 chr2D 91.912 136 3 6 300 435 491498336 491498463 2.320000e-42 183.0
15 TraesCS2B01G406700 chr2D 86.486 111 13 2 1384 1494 468978060 468978168 1.840000e-23 121.0
16 TraesCS2B01G406700 chr2D 93.750 64 2 2 3716 3779 169641449 169641510 1.120000e-15 95.3
17 TraesCS2B01G406700 chr2D 91.429 70 1 5 3713 3779 124330278 124330211 1.450000e-14 91.6
18 TraesCS2B01G406700 chr2D 90.278 72 2 5 3710 3779 403757941 403757873 5.200000e-14 89.8
19 TraesCS2B01G406700 chr2D 86.250 80 9 2 3033 3111 469101984 469101906 6.730000e-13 86.1
20 TraesCS2B01G406700 chr2D 80.645 93 18 0 3033 3125 468750569 468750661 5.240000e-09 73.1
21 TraesCS2B01G406700 chr2A 95.719 1635 61 4 1495 3126 635930979 635932607 0.000000e+00 2623.0
22 TraesCS2B01G406700 chr2A 89.495 1228 53 41 300 1495 635929764 635930947 0.000000e+00 1483.0
23 TraesCS2B01G406700 chr2A 91.536 319 19 3 3415 3732 635932623 635932934 2.090000e-117 433.0
24 TraesCS2B01G406700 chr2A 92.537 268 20 0 3150 3417 133674163 133674430 5.920000e-103 385.0
25 TraesCS2B01G406700 chr2A 79.325 474 78 12 2327 2787 608922637 608922171 7.880000e-82 315.0
26 TraesCS2B01G406700 chr2A 86.667 270 29 2 1639 1902 608593148 608593416 3.690000e-75 292.0
27 TraesCS2B01G406700 chr2A 79.817 218 28 8 2213 2430 608593414 608593615 1.090000e-30 145.0
28 TraesCS2B01G406700 chr2A 87.850 107 11 2 1384 1490 608898955 608899059 1.430000e-24 124.0
29 TraesCS2B01G406700 chr2A 95.161 62 1 2 3720 3779 625492989 625493050 3.110000e-16 97.1
30 TraesCS2B01G406700 chr2A 90.141 71 6 1 3710 3779 281437856 281437926 1.450000e-14 91.6
31 TraesCS2B01G406700 chr2A 80.645 93 18 0 3033 3125 608594547 608594639 5.240000e-09 73.1
32 TraesCS2B01G406700 chr6B 80.000 590 73 27 2451 3036 46692719 46693267 9.840000e-106 394.0
33 TraesCS2B01G406700 chr6B 92.251 271 19 1 3147 3415 579179234 579179504 2.130000e-102 383.0
34 TraesCS2B01G406700 chr6B 96.667 60 1 1 3720 3779 198694413 198694471 8.640000e-17 99.0
35 TraesCS2B01G406700 chr3B 92.937 269 19 0 3149 3417 635020720 635020988 3.540000e-105 392.0
36 TraesCS2B01G406700 chr3B 92.424 264 20 0 3152 3415 327046629 327046366 9.910000e-101 377.0
37 TraesCS2B01G406700 chr3B 79.902 204 35 5 75 277 797635504 797635702 1.090000e-30 145.0
38 TraesCS2B01G406700 chr7D 92.565 269 20 0 3149 3417 133332956 133333224 1.650000e-103 387.0
39 TraesCS2B01G406700 chr7D 82.629 213 27 4 75 277 595615230 595615442 3.000000e-41 180.0
40 TraesCS2B01G406700 chr7D 85.124 121 18 0 1375 1495 32998002 32998122 1.430000e-24 124.0
41 TraesCS2B01G406700 chr7D 79.618 157 20 6 132 277 635666535 635666690 6.680000e-18 102.0
42 TraesCS2B01G406700 chr7D 90.698 43 2 2 500 542 475871387 475871427 5.270000e-04 56.5
43 TraesCS2B01G406700 chr6D 91.606 274 23 0 3144 3417 112781893 112782166 2.750000e-101 379.0
44 TraesCS2B01G406700 chr4B 92.164 268 21 0 3150 3417 426774604 426774337 2.750000e-101 379.0
45 TraesCS2B01G406700 chr5B 91.575 273 22 1 3146 3417 253884986 253884714 3.560000e-100 375.0
46 TraesCS2B01G406700 chr5B 92.424 66 5 0 3712 3777 636234053 636234118 1.120000e-15 95.3
47 TraesCS2B01G406700 chr1D 82.437 279 37 7 1 277 315606550 315606282 2.270000e-57 233.0
48 TraesCS2B01G406700 chr5A 79.715 281 42 8 3454 3730 377929509 377929240 4.980000e-44 189.0
49 TraesCS2B01G406700 chr4A 81.875 160 25 4 75 232 624618812 624618655 8.520000e-27 132.0
50 TraesCS2B01G406700 chr4A 93.548 62 3 1 3718 3779 90274394 90274334 1.450000e-14 91.6
51 TraesCS2B01G406700 chr1A 95.161 62 1 2 3720 3779 303655139 303655200 3.110000e-16 97.1
52 TraesCS2B01G406700 chrUn 81.731 104 13 6 3033 3131 95520960 95521062 8.700000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G406700 chr2B 575933789 575937567 3778 False 6979.00 6979 100.0000 1 3779 1 chr2B.!!$F4 3778
1 TraesCS2B01G406700 chr2D 491497719 491501527 3808 False 1013.40 2660 91.6378 3 3732 5 chr2D.!!$F4 3729
2 TraesCS2B01G406700 chr2D 468749969 468750661 692 False 216.05 359 79.7165 2451 3125 2 chr2D.!!$F3 674
3 TraesCS2B01G406700 chr2D 469101906 469103332 1426 True 205.05 324 82.9770 2328 3111 2 chr2D.!!$R4 783
4 TraesCS2B01G406700 chr2A 635929764 635932934 3170 False 1513.00 2623 92.2500 300 3732 3 chr2A.!!$F6 3432
5 TraesCS2B01G406700 chr6B 46692719 46693267 548 False 394.00 394 80.0000 2451 3036 1 chr6B.!!$F1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.319405 ATGAACCTTTGCAGCAAGGC 59.681 50.0 15.75 3.09 0.00 4.35 F
1005 1373 0.033228 CGATCCTGAGACAGATGGCC 59.967 60.0 0.00 0.00 32.44 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1007 1375 0.670854 GAACAGGACGAACTGCTCCC 60.671 60.0 10.25 0.0 42.21 4.30 R
2864 3904 0.179097 GCCGCTCAAAGAGGAGGTAG 60.179 60.0 0.52 0.0 37.36 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.154347 GCTGGGTCAGAGGAGGCG 62.154 72.222 0.00 0.00 32.44 5.52
38 39 2.681778 CTGGGTCAGAGGAGGCGT 60.682 66.667 0.00 0.00 32.44 5.68
51 52 2.143594 GAGGCGTGACAACTCCGACT 62.144 60.000 0.00 0.00 43.96 4.18
54 55 2.022129 CGTGACAACTCCGACTGCC 61.022 63.158 0.00 0.00 0.00 4.85
130 131 0.319405 ATGAACCTTTGCAGCAAGGC 59.681 50.000 15.75 3.09 0.00 4.35
135 136 1.005394 CTTTGCAGCAAGGCCCTTG 60.005 57.895 19.47 19.47 43.57 3.61
143 144 0.463474 GCAAGGCCCTTGTTGCAAAA 60.463 50.000 23.90 0.00 46.83 2.44
152 153 0.463620 TTGTTGCAAAACCCCTGAGC 59.536 50.000 0.00 0.00 0.00 4.26
154 155 1.454847 TTGCAAAACCCCTGAGCGT 60.455 52.632 0.00 0.00 0.00 5.07
164 165 1.471676 CCCCTGAGCGTAACAAGCTAG 60.472 57.143 0.00 0.00 46.13 3.42
178 179 1.897560 AGCTAGTGTTGCAAAGGTCC 58.102 50.000 0.00 0.00 0.00 4.46
187 188 0.823356 TGCAAAGGTCCTCAGTTGGC 60.823 55.000 0.00 0.00 0.00 4.52
192 193 2.224159 GGTCCTCAGTTGGCTGGGA 61.224 63.158 0.00 0.00 45.98 4.37
196 197 1.687612 CTCAGTTGGCTGGGATGGT 59.312 57.895 0.00 0.00 45.98 3.55
247 248 1.557443 CCGCGGTTGATCTAATCGGC 61.557 60.000 19.50 6.25 43.06 5.54
256 257 4.537135 TGATCTAATCGGCTTATCACCC 57.463 45.455 0.00 0.00 0.00 4.61
515 867 0.973632 TACGGCAAGGTGACAGATGT 59.026 50.000 0.00 0.00 0.00 3.06
629 981 0.404812 AGTCCCACTGTCGACTAGGT 59.595 55.000 17.92 10.05 37.58 3.08
783 1141 4.178255 GACGCGCGTGTCACATCG 62.178 66.667 42.90 20.55 38.75 3.84
794 1152 2.586079 CACATCGGCGGTGCTAGG 60.586 66.667 21.87 3.54 0.00 3.02
795 1153 2.758327 ACATCGGCGGTGCTAGGA 60.758 61.111 21.87 0.00 0.00 2.94
814 1172 4.655963 AGGAGATTATATGCGTGCCAAAT 58.344 39.130 0.00 0.00 0.00 2.32
817 1175 4.397420 AGATTATATGCGTGCCAAATCCA 58.603 39.130 0.00 0.00 0.00 3.41
892 1255 0.395311 CCCTACCTACGCAGACCAGA 60.395 60.000 0.00 0.00 0.00 3.86
894 1257 0.739561 CTACCTACGCAGACCAGACC 59.260 60.000 0.00 0.00 0.00 3.85
940 1308 4.379143 GGCGCCGTCGTTTTGTCC 62.379 66.667 12.58 0.00 38.14 4.02
944 1312 2.663852 CCGTCGTTTTGTCCGGCT 60.664 61.111 0.00 0.00 33.20 5.52
977 1345 1.891060 GCTCTGTTTCGGTGCGTGAG 61.891 60.000 0.00 0.00 0.00 3.51
983 1351 2.652382 TTTCGGTGCGTGAGGAAGCA 62.652 55.000 0.00 0.00 41.55 3.91
989 1357 1.153745 GCGTGAGGAAGCACTCGAT 60.154 57.895 0.00 0.00 40.39 3.59
991 1359 0.526524 CGTGAGGAAGCACTCGATCC 60.527 60.000 0.00 0.00 40.39 3.36
992 1360 0.820871 GTGAGGAAGCACTCGATCCT 59.179 55.000 4.16 4.16 46.14 3.24
998 1366 1.474478 GAAGCACTCGATCCTGAGACA 59.526 52.381 4.81 0.00 39.35 3.41
999 1367 1.102154 AGCACTCGATCCTGAGACAG 58.898 55.000 4.81 0.00 39.35 3.51
1005 1373 0.033228 CGATCCTGAGACAGATGGCC 59.967 60.000 0.00 0.00 32.44 5.36
1007 1375 1.070445 GATCCTGAGACAGATGGCCAG 59.930 57.143 13.05 0.00 32.44 4.85
1064 1432 1.067582 CCTCCCGATTCGCTGGTAC 59.932 63.158 0.00 0.00 0.00 3.34
1065 1433 1.067582 CTCCCGATTCGCTGGTACC 59.932 63.158 4.43 4.43 0.00 3.34
1330 1699 0.792640 CTGCCACTGAAACTGCGTAG 59.207 55.000 0.00 0.00 0.00 3.51
1453 1822 1.513158 CGGCCACGAGTTCATCTCT 59.487 57.895 2.24 0.00 44.60 3.10
2083 2489 3.811497 CACACACTCTGCATTCTTCTGAA 59.189 43.478 0.00 0.00 36.54 3.02
2086 2492 5.180868 ACACACTCTGCATTCTTCTGAATTC 59.819 40.000 0.00 0.00 40.61 2.17
2095 2504 1.902508 TCTTCTGAATTCCTGCCGTCT 59.097 47.619 2.27 0.00 0.00 4.18
2113 2522 1.002430 TCTTTCTGATTCGTGCCTGCT 59.998 47.619 0.00 0.00 0.00 4.24
2115 2524 1.896220 TTCTGATTCGTGCCTGCTTT 58.104 45.000 0.00 0.00 0.00 3.51
2160 2569 2.978824 GGCGAGCAGTCCAAGGTA 59.021 61.111 0.00 0.00 0.00 3.08
2265 2674 0.460987 GGCACGTGAAGCAGAGCTAT 60.461 55.000 22.23 0.00 38.25 2.97
2289 2698 1.640917 GGTACTGGAGGGTGAAGACA 58.359 55.000 0.00 0.00 0.00 3.41
2325 2734 0.750850 ACGTGGTCAGCAACTACACT 59.249 50.000 6.57 0.00 39.21 3.55
2426 2835 3.129813 CAGTACGGCACCATCAGTAAGTA 59.870 47.826 0.00 0.00 0.00 2.24
2430 2839 2.268298 GGCACCATCAGTAAGTACACG 58.732 52.381 0.00 0.00 0.00 4.49
2500 2922 0.893270 TTTTGCAGATGACACGGGGG 60.893 55.000 0.00 0.00 0.00 5.40
2539 2961 1.546029 ACTACAACGAGATGCTGCTGA 59.454 47.619 0.00 0.00 0.00 4.26
2832 3872 6.371825 GGGTTTGAGTATCTCAGTTTAACTGG 59.628 42.308 22.82 14.35 45.94 4.00
2860 3900 7.941919 TGTAGAGTACAACTAATCCAGCATAG 58.058 38.462 0.00 0.00 35.38 2.23
2861 3901 5.848406 AGAGTACAACTAATCCAGCATAGC 58.152 41.667 0.00 0.00 0.00 2.97
2862 3902 5.363868 AGAGTACAACTAATCCAGCATAGCA 59.636 40.000 0.00 0.00 0.00 3.49
2863 3903 6.042552 AGAGTACAACTAATCCAGCATAGCAT 59.957 38.462 0.00 0.00 0.00 3.79
2864 3904 6.226787 AGTACAACTAATCCAGCATAGCATC 58.773 40.000 0.00 0.00 0.00 3.91
3069 4189 1.269012 CCATTGCCCTGGACATGTTT 58.731 50.000 0.00 0.00 38.69 2.83
3076 4196 3.245229 TGCCCTGGACATGTTTTACTCAT 60.245 43.478 0.00 0.00 0.00 2.90
3126 4246 4.530388 GTCGGTAAAGCCAAAACTTGTAC 58.470 43.478 0.00 0.00 36.97 2.90
3127 4247 4.274214 GTCGGTAAAGCCAAAACTTGTACT 59.726 41.667 0.00 0.00 36.97 2.73
3128 4248 4.273969 TCGGTAAAGCCAAAACTTGTACTG 59.726 41.667 0.00 0.00 36.97 2.74
3129 4249 4.035909 CGGTAAAGCCAAAACTTGTACTGT 59.964 41.667 0.00 0.00 36.97 3.55
3130 4250 5.236911 CGGTAAAGCCAAAACTTGTACTGTA 59.763 40.000 0.00 0.00 36.97 2.74
3131 4251 6.432936 GGTAAAGCCAAAACTTGTACTGTAC 58.567 40.000 10.98 10.98 37.17 2.90
3132 4252 6.261603 GGTAAAGCCAAAACTTGTACTGTACT 59.738 38.462 17.98 0.00 37.17 2.73
3133 4253 7.442062 GGTAAAGCCAAAACTTGTACTGTACTA 59.558 37.037 17.98 10.30 37.17 1.82
3154 4274 9.849166 GTACTATCTAGATTCTGTTGATAAGGC 57.151 37.037 11.25 0.00 0.00 4.35
3155 4275 8.719645 ACTATCTAGATTCTGTTGATAAGGCT 57.280 34.615 11.25 0.00 0.00 4.58
3156 4276 9.815306 ACTATCTAGATTCTGTTGATAAGGCTA 57.185 33.333 11.25 0.00 0.00 3.93
3158 4278 8.719645 ATCTAGATTCTGTTGATAAGGCTAGT 57.280 34.615 0.00 0.00 0.00 2.57
3159 4279 8.172352 TCTAGATTCTGTTGATAAGGCTAGTC 57.828 38.462 0.00 0.00 0.00 2.59
3160 4280 6.798427 AGATTCTGTTGATAAGGCTAGTCA 57.202 37.500 0.00 0.00 0.00 3.41
3161 4281 7.372260 AGATTCTGTTGATAAGGCTAGTCAT 57.628 36.000 0.00 0.00 0.00 3.06
3162 4282 8.484214 AGATTCTGTTGATAAGGCTAGTCATA 57.516 34.615 0.00 0.00 0.00 2.15
3163 4283 8.584157 AGATTCTGTTGATAAGGCTAGTCATAG 58.416 37.037 0.00 5.48 0.00 2.23
3164 4284 7.661536 TTCTGTTGATAAGGCTAGTCATAGT 57.338 36.000 0.00 0.00 0.00 2.12
3165 4285 7.043961 TCTGTTGATAAGGCTAGTCATAGTG 57.956 40.000 0.00 0.00 0.00 2.74
3166 4286 6.040955 TCTGTTGATAAGGCTAGTCATAGTGG 59.959 42.308 0.00 0.00 0.00 4.00
3167 4287 5.070446 TGTTGATAAGGCTAGTCATAGTGGG 59.930 44.000 0.00 0.00 0.00 4.61
3168 4288 5.074746 TGATAAGGCTAGTCATAGTGGGA 57.925 43.478 0.00 0.00 0.00 4.37
3169 4289 5.080337 TGATAAGGCTAGTCATAGTGGGAG 58.920 45.833 0.00 0.00 0.00 4.30
3170 4290 3.406512 AAGGCTAGTCATAGTGGGAGT 57.593 47.619 0.00 0.00 0.00 3.85
3171 4291 4.537945 AAGGCTAGTCATAGTGGGAGTA 57.462 45.455 0.00 0.00 0.00 2.59
3172 4292 4.537945 AGGCTAGTCATAGTGGGAGTAA 57.462 45.455 0.00 0.00 0.00 2.24
3173 4293 4.216708 AGGCTAGTCATAGTGGGAGTAAC 58.783 47.826 0.00 0.00 0.00 2.50
3174 4294 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
3175 4295 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
3176 4296 5.832060 GGCTAGTCATAGTGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
3177 4297 6.323225 GGCTAGTCATAGTGGGAGTAACTTAA 59.677 42.308 0.00 0.00 0.00 1.85
3178 4298 7.201835 GCTAGTCATAGTGGGAGTAACTTAAC 58.798 42.308 0.00 0.00 0.00 2.01
3179 4299 7.068470 GCTAGTCATAGTGGGAGTAACTTAACT 59.932 40.741 0.00 0.00 0.00 2.24
3180 4300 9.624373 CTAGTCATAGTGGGAGTAACTTAACTA 57.376 37.037 0.00 0.00 0.00 2.24
3182 4302 9.490083 AGTCATAGTGGGAGTAACTTAACTATT 57.510 33.333 0.00 0.00 30.42 1.73
3191 4311 9.189723 GGGAGTAACTTAACTATTAACATAGCG 57.810 37.037 0.00 0.00 36.54 4.26
3192 4312 8.697960 GGAGTAACTTAACTATTAACATAGCGC 58.302 37.037 0.00 0.00 36.54 5.92
3193 4313 9.241317 GAGTAACTTAACTATTAACATAGCGCA 57.759 33.333 11.47 0.00 36.54 6.09
3194 4314 9.028185 AGTAACTTAACTATTAACATAGCGCAC 57.972 33.333 11.47 0.00 36.54 5.34
3195 4315 9.028185 GTAACTTAACTATTAACATAGCGCACT 57.972 33.333 11.47 0.00 36.54 4.40
3196 4316 8.488651 AACTTAACTATTAACATAGCGCACTT 57.511 30.769 11.47 0.00 36.54 3.16
3197 4317 8.488651 ACTTAACTATTAACATAGCGCACTTT 57.511 30.769 11.47 0.00 36.54 2.66
3198 4318 9.590451 ACTTAACTATTAACATAGCGCACTTTA 57.410 29.630 11.47 0.00 36.54 1.85
3201 4321 8.712285 AACTATTAACATAGCGCACTTTAAGA 57.288 30.769 11.47 4.22 36.54 2.10
3202 4322 8.712285 ACTATTAACATAGCGCACTTTAAGAA 57.288 30.769 11.47 0.00 36.54 2.52
3203 4323 9.158233 ACTATTAACATAGCGCACTTTAAGAAA 57.842 29.630 11.47 0.00 36.54 2.52
3204 4324 9.422196 CTATTAACATAGCGCACTTTAAGAAAC 57.578 33.333 11.47 0.00 0.00 2.78
3205 4325 5.941948 AACATAGCGCACTTTAAGAAACT 57.058 34.783 11.47 0.00 0.00 2.66
3206 4326 5.941948 ACATAGCGCACTTTAAGAAACTT 57.058 34.783 11.47 0.00 0.00 2.66
3207 4327 6.313744 ACATAGCGCACTTTAAGAAACTTT 57.686 33.333 11.47 0.00 0.00 2.66
3208 4328 6.735130 ACATAGCGCACTTTAAGAAACTTTT 58.265 32.000 11.47 0.00 0.00 2.27
3209 4329 7.867752 ACATAGCGCACTTTAAGAAACTTTTA 58.132 30.769 11.47 0.00 0.00 1.52
3210 4330 7.801783 ACATAGCGCACTTTAAGAAACTTTTAC 59.198 33.333 11.47 0.00 0.00 2.01
3211 4331 6.373186 AGCGCACTTTAAGAAACTTTTACT 57.627 33.333 11.47 0.00 0.00 2.24
3212 4332 6.792326 AGCGCACTTTAAGAAACTTTTACTT 58.208 32.000 11.47 0.00 0.00 2.24
3213 4333 7.922837 AGCGCACTTTAAGAAACTTTTACTTA 58.077 30.769 11.47 0.00 0.00 2.24
3214 4334 8.565416 AGCGCACTTTAAGAAACTTTTACTTAT 58.435 29.630 11.47 0.00 0.00 1.73
3215 4335 8.627428 GCGCACTTTAAGAAACTTTTACTTATG 58.373 33.333 0.30 0.00 0.00 1.90
3216 4336 9.659830 CGCACTTTAAGAAACTTTTACTTATGT 57.340 29.630 0.00 0.00 0.00 2.29
3219 4339 9.961265 ACTTTAAGAAACTTTTACTTATGTGGC 57.039 29.630 0.00 0.00 0.00 5.01
3220 4340 9.113876 CTTTAAGAAACTTTTACTTATGTGGCG 57.886 33.333 0.00 0.00 0.00 5.69
3221 4341 6.628919 AAGAAACTTTTACTTATGTGGCGT 57.371 33.333 0.00 0.00 0.00 5.68
3222 4342 5.997385 AGAAACTTTTACTTATGTGGCGTG 58.003 37.500 0.00 0.00 0.00 5.34
3223 4343 5.529800 AGAAACTTTTACTTATGTGGCGTGT 59.470 36.000 0.00 0.00 0.00 4.49
3224 4344 6.707161 AGAAACTTTTACTTATGTGGCGTGTA 59.293 34.615 0.00 0.00 0.00 2.90
3225 4345 6.864360 AACTTTTACTTATGTGGCGTGTAA 57.136 33.333 0.00 0.00 0.00 2.41
3226 4346 7.443259 AACTTTTACTTATGTGGCGTGTAAT 57.557 32.000 0.00 0.00 0.00 1.89
3227 4347 7.443259 ACTTTTACTTATGTGGCGTGTAATT 57.557 32.000 0.00 0.00 0.00 1.40
3228 4348 8.550710 ACTTTTACTTATGTGGCGTGTAATTA 57.449 30.769 0.00 0.00 0.00 1.40
3229 4349 9.001542 ACTTTTACTTATGTGGCGTGTAATTAA 57.998 29.630 0.00 0.00 0.00 1.40
3230 4350 9.997482 CTTTTACTTATGTGGCGTGTAATTAAT 57.003 29.630 0.00 0.00 0.00 1.40
3231 4351 9.776158 TTTTACTTATGTGGCGTGTAATTAATG 57.224 29.630 0.00 0.00 0.00 1.90
3232 4352 8.719560 TTACTTATGTGGCGTGTAATTAATGA 57.280 30.769 0.00 0.00 0.00 2.57
3233 4353 7.246674 ACTTATGTGGCGTGTAATTAATGAG 57.753 36.000 0.00 0.00 0.00 2.90
3234 4354 7.045416 ACTTATGTGGCGTGTAATTAATGAGA 58.955 34.615 0.00 0.00 0.00 3.27
3235 4355 7.551262 ACTTATGTGGCGTGTAATTAATGAGAA 59.449 33.333 0.00 0.00 0.00 2.87
3236 4356 5.794687 TGTGGCGTGTAATTAATGAGAAG 57.205 39.130 0.00 0.00 0.00 2.85
3237 4357 5.242434 TGTGGCGTGTAATTAATGAGAAGT 58.758 37.500 0.00 0.00 0.00 3.01
3238 4358 5.121611 TGTGGCGTGTAATTAATGAGAAGTG 59.878 40.000 0.00 0.00 0.00 3.16
3239 4359 4.634004 TGGCGTGTAATTAATGAGAAGTGG 59.366 41.667 0.00 0.00 0.00 4.00
3240 4360 4.634443 GGCGTGTAATTAATGAGAAGTGGT 59.366 41.667 0.00 0.00 0.00 4.16
3241 4361 5.813672 GGCGTGTAATTAATGAGAAGTGGTA 59.186 40.000 0.00 0.00 0.00 3.25
3242 4362 6.314400 GGCGTGTAATTAATGAGAAGTGGTAA 59.686 38.462 0.00 0.00 0.00 2.85
3243 4363 7.178074 GCGTGTAATTAATGAGAAGTGGTAAC 58.822 38.462 0.00 0.00 0.00 2.50
3273 4393 6.470557 TGTTACTGTAACATAACGCTTTCC 57.529 37.500 25.14 0.13 43.23 3.13
3274 4394 5.990386 TGTTACTGTAACATAACGCTTTCCA 59.010 36.000 25.14 2.58 43.23 3.53
3275 4395 6.482641 TGTTACTGTAACATAACGCTTTCCAA 59.517 34.615 25.14 2.12 43.23 3.53
3276 4396 5.607119 ACTGTAACATAACGCTTTCCAAG 57.393 39.130 0.00 0.00 0.00 3.61
3277 4397 4.454504 ACTGTAACATAACGCTTTCCAAGG 59.545 41.667 0.00 0.00 0.00 3.61
3278 4398 3.189702 TGTAACATAACGCTTTCCAAGGC 59.810 43.478 0.00 0.00 0.00 4.35
3279 4399 1.904287 ACATAACGCTTTCCAAGGCA 58.096 45.000 0.00 0.00 0.00 4.75
3280 4400 2.235016 ACATAACGCTTTCCAAGGCAA 58.765 42.857 0.00 0.00 0.00 4.52
3281 4401 2.228822 ACATAACGCTTTCCAAGGCAAG 59.771 45.455 0.00 0.00 0.00 4.01
3282 4402 2.264005 TAACGCTTTCCAAGGCAAGA 57.736 45.000 2.59 0.00 0.00 3.02
3283 4403 1.620822 AACGCTTTCCAAGGCAAGAT 58.379 45.000 2.59 0.00 0.00 2.40
3284 4404 0.883833 ACGCTTTCCAAGGCAAGATG 59.116 50.000 2.59 0.00 0.00 2.90
3285 4405 1.167851 CGCTTTCCAAGGCAAGATGA 58.832 50.000 2.59 0.00 0.00 2.92
3286 4406 1.131883 CGCTTTCCAAGGCAAGATGAG 59.868 52.381 2.59 0.00 0.00 2.90
3287 4407 2.165998 GCTTTCCAAGGCAAGATGAGT 58.834 47.619 2.59 0.00 0.00 3.41
3288 4408 2.163211 GCTTTCCAAGGCAAGATGAGTC 59.837 50.000 2.59 0.00 0.00 3.36
3289 4409 3.683802 CTTTCCAAGGCAAGATGAGTCT 58.316 45.455 0.00 0.00 35.82 3.24
3290 4410 4.836825 CTTTCCAAGGCAAGATGAGTCTA 58.163 43.478 0.00 0.00 33.30 2.59
3291 4411 3.895232 TCCAAGGCAAGATGAGTCTAC 57.105 47.619 0.00 0.00 33.30 2.59
3292 4412 3.173151 TCCAAGGCAAGATGAGTCTACA 58.827 45.455 0.00 0.00 33.30 2.74
3293 4413 3.582647 TCCAAGGCAAGATGAGTCTACAA 59.417 43.478 0.00 0.00 33.30 2.41
3294 4414 3.937706 CCAAGGCAAGATGAGTCTACAAG 59.062 47.826 0.00 0.00 33.30 3.16
3295 4415 3.258971 AGGCAAGATGAGTCTACAAGC 57.741 47.619 0.00 0.00 33.30 4.01
3296 4416 2.836981 AGGCAAGATGAGTCTACAAGCT 59.163 45.455 0.00 0.00 33.30 3.74
3297 4417 4.026744 AGGCAAGATGAGTCTACAAGCTA 58.973 43.478 0.00 0.00 33.30 3.32
3298 4418 4.467795 AGGCAAGATGAGTCTACAAGCTAA 59.532 41.667 0.00 0.00 33.30 3.09
3299 4419 5.130145 AGGCAAGATGAGTCTACAAGCTAAT 59.870 40.000 0.00 0.00 33.30 1.73
3300 4420 6.325028 AGGCAAGATGAGTCTACAAGCTAATA 59.675 38.462 0.00 0.00 33.30 0.98
3301 4421 6.986817 GGCAAGATGAGTCTACAAGCTAATAA 59.013 38.462 0.00 0.00 33.30 1.40
3302 4422 7.495934 GGCAAGATGAGTCTACAAGCTAATAAA 59.504 37.037 0.00 0.00 33.30 1.40
3303 4423 9.050601 GCAAGATGAGTCTACAAGCTAATAAAT 57.949 33.333 0.00 0.00 33.30 1.40
3309 4429 9.587772 TGAGTCTACAAGCTAATAAATGAAGTC 57.412 33.333 0.00 0.00 0.00 3.01
3310 4430 8.950208 AGTCTACAAGCTAATAAATGAAGTCC 57.050 34.615 0.00 0.00 0.00 3.85
3311 4431 8.763601 AGTCTACAAGCTAATAAATGAAGTCCT 58.236 33.333 0.00 0.00 0.00 3.85
3312 4432 9.036671 GTCTACAAGCTAATAAATGAAGTCCTC 57.963 37.037 0.00 0.00 0.00 3.71
3313 4433 8.982723 TCTACAAGCTAATAAATGAAGTCCTCT 58.017 33.333 0.00 0.00 0.00 3.69
3316 4436 9.553064 ACAAGCTAATAAATGAAGTCCTCTATG 57.447 33.333 0.00 0.00 0.00 2.23
3317 4437 9.770097 CAAGCTAATAAATGAAGTCCTCTATGA 57.230 33.333 0.00 0.00 0.00 2.15
3318 4438 9.771534 AAGCTAATAAATGAAGTCCTCTATGAC 57.228 33.333 0.00 0.00 35.43 3.06
3319 4439 8.928448 AGCTAATAAATGAAGTCCTCTATGACA 58.072 33.333 0.00 0.00 37.73 3.58
3320 4440 8.983724 GCTAATAAATGAAGTCCTCTATGACAC 58.016 37.037 0.00 0.00 37.73 3.67
3324 4444 7.726033 AAATGAAGTCCTCTATGACACTACT 57.274 36.000 0.00 0.00 37.73 2.57
3325 4445 8.824756 AAATGAAGTCCTCTATGACACTACTA 57.175 34.615 0.00 0.00 37.73 1.82
3326 4446 7.811117 ATGAAGTCCTCTATGACACTACTAC 57.189 40.000 0.00 0.00 37.73 2.73
3327 4447 6.959904 TGAAGTCCTCTATGACACTACTACT 58.040 40.000 0.00 0.00 37.73 2.57
3328 4448 8.087303 TGAAGTCCTCTATGACACTACTACTA 57.913 38.462 0.00 0.00 37.73 1.82
3329 4449 8.715842 TGAAGTCCTCTATGACACTACTACTAT 58.284 37.037 0.00 0.00 37.73 2.12
3330 4450 8.911918 AAGTCCTCTATGACACTACTACTATG 57.088 38.462 0.00 0.00 37.73 2.23
3331 4451 8.036585 AGTCCTCTATGACACTACTACTATGT 57.963 38.462 0.00 0.00 37.73 2.29
3332 4452 8.496088 AGTCCTCTATGACACTACTACTATGTT 58.504 37.037 0.00 0.00 37.73 2.71
3333 4453 9.775854 GTCCTCTATGACACTACTACTATGTTA 57.224 37.037 0.00 0.00 35.29 2.41
3334 4454 9.775854 TCCTCTATGACACTACTACTATGTTAC 57.224 37.037 0.00 0.00 0.00 2.50
3335 4455 9.781633 CCTCTATGACACTACTACTATGTTACT 57.218 37.037 0.00 0.00 0.00 2.24
3339 4459 8.928270 ATGACACTACTACTATGTTACTTTGC 57.072 34.615 0.00 0.00 0.00 3.68
3340 4460 7.888424 TGACACTACTACTATGTTACTTTGCA 58.112 34.615 0.00 0.00 0.00 4.08
3341 4461 7.811236 TGACACTACTACTATGTTACTTTGCAC 59.189 37.037 0.00 0.00 0.00 4.57
3342 4462 7.893658 ACACTACTACTATGTTACTTTGCACT 58.106 34.615 0.00 0.00 0.00 4.40
3343 4463 9.017509 ACACTACTACTATGTTACTTTGCACTA 57.982 33.333 0.00 0.00 0.00 2.74
3373 4493 9.908747 AGATAGTAACTTAGACTAGTGTCATGT 57.091 33.333 0.00 0.00 45.20 3.21
3401 4521 7.828508 TGACACTAGTTTAAGTTACTCCTCA 57.171 36.000 0.00 0.00 0.00 3.86
3402 4522 7.655490 TGACACTAGTTTAAGTTACTCCTCAC 58.345 38.462 0.00 0.00 0.00 3.51
3403 4523 7.504911 TGACACTAGTTTAAGTTACTCCTCACT 59.495 37.037 0.00 0.00 0.00 3.41
3404 4524 8.930846 ACACTAGTTTAAGTTACTCCTCACTA 57.069 34.615 0.00 0.00 0.00 2.74
3405 4525 9.531158 ACACTAGTTTAAGTTACTCCTCACTAT 57.469 33.333 0.00 0.00 0.00 2.12
3406 4526 9.790389 CACTAGTTTAAGTTACTCCTCACTATG 57.210 37.037 0.00 0.00 0.00 2.23
3407 4527 9.750783 ACTAGTTTAAGTTACTCCTCACTATGA 57.249 33.333 0.00 0.00 0.00 2.15
3409 4529 7.838884 AGTTTAAGTTACTCCTCACTATGACC 58.161 38.462 0.00 0.00 0.00 4.02
3410 4530 7.453752 AGTTTAAGTTACTCCTCACTATGACCA 59.546 37.037 0.00 0.00 0.00 4.02
3411 4531 5.923733 AAGTTACTCCTCACTATGACCAG 57.076 43.478 0.00 0.00 0.00 4.00
3412 4532 3.702045 AGTTACTCCTCACTATGACCAGC 59.298 47.826 0.00 0.00 0.00 4.85
3413 4533 1.490574 ACTCCTCACTATGACCAGCC 58.509 55.000 0.00 0.00 0.00 4.85
3414 4534 1.007721 ACTCCTCACTATGACCAGCCT 59.992 52.381 0.00 0.00 0.00 4.58
3415 4535 2.245028 ACTCCTCACTATGACCAGCCTA 59.755 50.000 0.00 0.00 0.00 3.93
3416 4536 3.300388 CTCCTCACTATGACCAGCCTAA 58.700 50.000 0.00 0.00 0.00 2.69
3495 4615 2.106683 GCACGGCCGAAACATAGCT 61.107 57.895 35.90 1.64 0.00 3.32
3496 4616 1.715585 CACGGCCGAAACATAGCTG 59.284 57.895 35.90 12.72 38.87 4.24
3497 4617 1.449601 ACGGCCGAAACATAGCTGG 60.450 57.895 35.90 0.00 37.20 4.85
3539 4659 3.260100 CCACCTCCACCCCAGCTT 61.260 66.667 0.00 0.00 0.00 3.74
3540 4660 2.845345 CCACCTCCACCCCAGCTTT 61.845 63.158 0.00 0.00 0.00 3.51
3544 4664 1.770324 CTCCACCCCAGCTTTCCTT 59.230 57.895 0.00 0.00 0.00 3.36
3655 4775 4.142138 CCTGGACAAAGCTAATCGACTACT 60.142 45.833 0.00 0.00 0.00 2.57
3732 4853 0.765510 ACACCGCTTCTTTCCTCCTT 59.234 50.000 0.00 0.00 0.00 3.36
3733 4854 1.160137 CACCGCTTCTTTCCTCCTTG 58.840 55.000 0.00 0.00 0.00 3.61
3734 4855 0.765510 ACCGCTTCTTTCCTCCTTGT 59.234 50.000 0.00 0.00 0.00 3.16
3735 4856 1.270893 ACCGCTTCTTTCCTCCTTGTC 60.271 52.381 0.00 0.00 0.00 3.18
3736 4857 1.071605 CGCTTCTTTCCTCCTTGTCG 58.928 55.000 0.00 0.00 0.00 4.35
3737 4858 1.605712 CGCTTCTTTCCTCCTTGTCGT 60.606 52.381 0.00 0.00 0.00 4.34
3738 4859 2.495084 GCTTCTTTCCTCCTTGTCGTT 58.505 47.619 0.00 0.00 0.00 3.85
3739 4860 2.224314 GCTTCTTTCCTCCTTGTCGTTG 59.776 50.000 0.00 0.00 0.00 4.10
3740 4861 3.467803 CTTCTTTCCTCCTTGTCGTTGT 58.532 45.455 0.00 0.00 0.00 3.32
3741 4862 3.107642 TCTTTCCTCCTTGTCGTTGTC 57.892 47.619 0.00 0.00 0.00 3.18
3742 4863 2.432874 TCTTTCCTCCTTGTCGTTGTCA 59.567 45.455 0.00 0.00 0.00 3.58
3743 4864 2.992124 TTCCTCCTTGTCGTTGTCAA 57.008 45.000 0.00 0.00 0.00 3.18
3744 4865 2.992124 TCCTCCTTGTCGTTGTCAAA 57.008 45.000 0.00 0.00 0.00 2.69
3745 4866 3.269538 TCCTCCTTGTCGTTGTCAAAA 57.730 42.857 0.00 0.00 0.00 2.44
3746 4867 2.940410 TCCTCCTTGTCGTTGTCAAAAC 59.060 45.455 0.00 0.00 0.00 2.43
3747 4868 2.032924 CCTCCTTGTCGTTGTCAAAACC 59.967 50.000 0.00 0.00 0.00 3.27
3748 4869 1.666700 TCCTTGTCGTTGTCAAAACCG 59.333 47.619 0.00 0.00 0.00 4.44
3749 4870 1.268335 CCTTGTCGTTGTCAAAACCGG 60.268 52.381 0.00 0.00 0.00 5.28
3750 4871 0.099082 TTGTCGTTGTCAAAACCGGC 59.901 50.000 0.00 0.00 0.00 6.13
3751 4872 1.368374 GTCGTTGTCAAAACCGGCG 60.368 57.895 0.00 0.00 0.00 6.46
3752 4873 2.051703 CGTTGTCAAAACCGGCGG 60.052 61.111 27.06 27.06 0.00 6.13
3753 4874 2.535788 CGTTGTCAAAACCGGCGGA 61.536 57.895 35.78 6.54 0.00 5.54
3754 4875 1.847890 CGTTGTCAAAACCGGCGGAT 61.848 55.000 35.78 20.37 0.00 4.18
3755 4876 0.109919 GTTGTCAAAACCGGCGGATC 60.110 55.000 35.78 9.52 0.00 3.36
3756 4877 0.250553 TTGTCAAAACCGGCGGATCT 60.251 50.000 35.78 13.84 0.00 2.75
3757 4878 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
3758 4879 1.447140 TCAAAACCGGCGGATCTCG 60.447 57.895 35.78 16.34 42.76 4.04
3763 4884 3.671411 CCGGCGGATCTCGGGTAG 61.671 72.222 24.41 0.00 42.32 3.18
3764 4885 3.671411 CGGCGGATCTCGGGTAGG 61.671 72.222 0.00 0.00 39.69 3.18
3765 4886 3.303928 GGCGGATCTCGGGTAGGG 61.304 72.222 5.87 0.00 39.69 3.53
3766 4887 3.303928 GCGGATCTCGGGTAGGGG 61.304 72.222 5.87 0.00 39.69 4.79
3767 4888 2.600769 CGGATCTCGGGTAGGGGG 60.601 72.222 0.00 0.00 34.75 5.40
3768 4889 2.613421 GGATCTCGGGTAGGGGGT 59.387 66.667 0.00 0.00 0.00 4.95
3769 4890 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
3770 4891 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
3771 4892 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.034960 ACCTCGAGCAGCTGTCTCTA 60.035 55.000 25.44 18.24 0.00 2.43
1 2 1.304052 ACCTCGAGCAGCTGTCTCT 60.304 57.895 25.44 12.81 0.00 3.10
5 6 3.309506 AGCACCTCGAGCAGCTGT 61.310 61.111 23.54 7.18 35.72 4.40
16 17 1.611851 CTCCTCTGACCCAGCACCT 60.612 63.158 0.00 0.00 0.00 4.00
37 38 2.022129 CGGCAGTCGGAGTTGTCAC 61.022 63.158 0.00 0.00 34.75 3.67
38 39 2.338620 CGGCAGTCGGAGTTGTCA 59.661 61.111 0.00 0.00 34.75 3.58
102 103 1.068541 GCAAAGGTTCATCGGGACAAC 60.069 52.381 0.00 0.00 0.00 3.32
130 131 0.106521 CAGGGGTTTTGCAACAAGGG 59.893 55.000 0.00 0.00 34.15 3.95
135 136 1.007387 CGCTCAGGGGTTTTGCAAC 60.007 57.895 0.00 0.00 0.00 4.17
143 144 1.003718 GCTTGTTACGCTCAGGGGT 60.004 57.895 0.00 0.00 41.52 4.95
152 153 3.870723 TTGCAACACTAGCTTGTTACG 57.129 42.857 3.51 0.00 37.62 3.18
154 155 4.204012 ACCTTTGCAACACTAGCTTGTTA 58.796 39.130 0.00 0.00 37.62 2.41
164 165 1.680338 ACTGAGGACCTTTGCAACAC 58.320 50.000 0.00 0.00 0.00 3.32
187 188 2.294791 GTCGTCTGATCTACCATCCCAG 59.705 54.545 0.00 0.00 0.00 4.45
234 235 4.560716 CGGGTGATAAGCCGATTAGATCAA 60.561 45.833 16.12 0.00 0.00 2.57
247 248 0.870307 CGCGTCCTTCGGGTGATAAG 60.870 60.000 0.00 0.00 45.29 1.73
256 257 2.152699 CAGTGCTACGCGTCCTTCG 61.153 63.158 18.63 1.08 43.12 3.79
259 260 4.436998 GGCAGTGCTACGCGTCCT 62.437 66.667 18.63 4.74 0.00 3.85
260 261 3.934391 AAGGCAGTGCTACGCGTCC 62.934 63.158 18.63 9.27 0.00 4.79
281 283 4.261801 GTGGTACTAGATTGTTGCCATGT 58.738 43.478 0.00 0.00 0.00 3.21
329 650 5.690865 TGAATTCCACATCCCTATGGTAAC 58.309 41.667 2.27 0.00 37.43 2.50
330 651 5.985175 TGAATTCCACATCCCTATGGTAA 57.015 39.130 2.27 0.00 37.43 2.85
331 652 5.279960 CGATGAATTCCACATCCCTATGGTA 60.280 44.000 2.27 0.00 40.40 3.25
332 653 4.505566 CGATGAATTCCACATCCCTATGGT 60.506 45.833 2.27 0.00 40.40 3.55
333 654 4.005650 CGATGAATTCCACATCCCTATGG 58.994 47.826 2.27 0.00 40.40 2.74
336 657 2.224523 GGCGATGAATTCCACATCCCTA 60.225 50.000 2.27 0.00 40.40 3.53
337 658 1.477558 GGCGATGAATTCCACATCCCT 60.478 52.381 2.27 0.00 40.40 4.20
338 659 0.954452 GGCGATGAATTCCACATCCC 59.046 55.000 2.27 1.15 40.40 3.85
339 660 0.954452 GGGCGATGAATTCCACATCC 59.046 55.000 2.27 0.00 40.40 3.51
340 661 1.679139 TGGGCGATGAATTCCACATC 58.321 50.000 2.27 0.00 40.19 3.06
341 662 1.750778 GTTGGGCGATGAATTCCACAT 59.249 47.619 2.27 0.00 0.00 3.21
342 663 1.173043 GTTGGGCGATGAATTCCACA 58.827 50.000 2.27 0.00 0.00 4.17
343 664 0.455815 GGTTGGGCGATGAATTCCAC 59.544 55.000 2.27 0.00 0.00 4.02
344 665 0.038890 TGGTTGGGCGATGAATTCCA 59.961 50.000 2.27 0.00 0.00 3.53
356 677 3.763360 TGTAATTGATGCTCTTGGTTGGG 59.237 43.478 0.00 0.00 0.00 4.12
515 867 0.944311 GCGTTCGTTTCCTCTCTGCA 60.944 55.000 0.00 0.00 0.00 4.41
629 981 3.260884 ACTGATTACTCTCCTTTTCGGCA 59.739 43.478 0.00 0.00 0.00 5.69
783 1141 3.786635 CATATAATCTCCTAGCACCGCC 58.213 50.000 0.00 0.00 0.00 6.13
794 1152 4.455533 TGGATTTGGCACGCATATAATCTC 59.544 41.667 5.96 0.00 0.00 2.75
795 1153 4.397420 TGGATTTGGCACGCATATAATCT 58.603 39.130 5.96 0.00 0.00 2.40
814 1172 1.081174 AGGAAGAGGACAGGGATTGGA 59.919 52.381 0.00 0.00 0.00 3.53
817 1175 1.273324 ACGAGGAAGAGGACAGGGATT 60.273 52.381 0.00 0.00 0.00 3.01
892 1255 3.819652 TGGCAGTTGGCACCTGGT 61.820 61.111 14.20 0.00 46.12 4.00
928 1291 2.664436 GGAGCCGGACAAAACGACG 61.664 63.158 5.05 0.00 0.00 5.12
952 1320 3.793144 CCGAAACAGAGCAGCGGC 61.793 66.667 0.00 0.00 41.61 6.53
953 1321 2.357517 ACCGAAACAGAGCAGCGG 60.358 61.111 0.00 0.00 46.83 5.52
954 1322 2.856032 CACCGAAACAGAGCAGCG 59.144 61.111 0.00 0.00 0.00 5.18
955 1323 2.558313 GCACCGAAACAGAGCAGC 59.442 61.111 0.00 0.00 0.00 5.25
956 1324 1.956170 ACGCACCGAAACAGAGCAG 60.956 57.895 0.00 0.00 0.00 4.24
957 1325 2.108157 ACGCACCGAAACAGAGCA 59.892 55.556 0.00 0.00 0.00 4.26
958 1326 1.891060 CTCACGCACCGAAACAGAGC 61.891 60.000 0.00 0.00 0.00 4.09
959 1327 1.284982 CCTCACGCACCGAAACAGAG 61.285 60.000 0.00 0.00 0.00 3.35
960 1328 1.300620 CCTCACGCACCGAAACAGA 60.301 57.895 0.00 0.00 0.00 3.41
961 1329 0.878523 TTCCTCACGCACCGAAACAG 60.879 55.000 0.00 0.00 0.00 3.16
962 1330 0.878523 CTTCCTCACGCACCGAAACA 60.879 55.000 0.00 0.00 0.00 2.83
963 1331 1.860078 CTTCCTCACGCACCGAAAC 59.140 57.895 0.00 0.00 0.00 2.78
964 1332 1.959226 GCTTCCTCACGCACCGAAA 60.959 57.895 0.00 0.00 0.00 3.46
965 1333 2.357034 GCTTCCTCACGCACCGAA 60.357 61.111 0.00 0.00 0.00 4.30
966 1334 3.611674 TGCTTCCTCACGCACCGA 61.612 61.111 0.00 0.00 0.00 4.69
977 1345 1.107114 TCTCAGGATCGAGTGCTTCC 58.893 55.000 0.00 0.00 34.46 3.46
983 1351 2.305928 CCATCTGTCTCAGGATCGAGT 58.694 52.381 0.00 0.00 34.46 4.18
989 1357 0.979709 CCTGGCCATCTGTCTCAGGA 60.980 60.000 5.51 0.00 45.66 3.86
991 1359 0.979709 TCCCTGGCCATCTGTCTCAG 60.980 60.000 5.51 0.00 0.00 3.35
992 1360 0.979709 CTCCCTGGCCATCTGTCTCA 60.980 60.000 5.51 0.00 0.00 3.27
998 1366 1.919600 GAACTGCTCCCTGGCCATCT 61.920 60.000 5.51 0.00 0.00 2.90
999 1367 1.452833 GAACTGCTCCCTGGCCATC 60.453 63.158 5.51 0.00 0.00 3.51
1005 1373 1.079543 CAGGACGAACTGCTCCCTG 60.080 63.158 0.00 0.00 38.48 4.45
1007 1375 0.670854 GAACAGGACGAACTGCTCCC 60.671 60.000 10.25 0.00 42.21 4.30
1064 1432 3.256631 CACATCAGGAGAAAACCAAAGGG 59.743 47.826 0.00 0.00 41.29 3.95
1065 1433 3.891366 ACACATCAGGAGAAAACCAAAGG 59.109 43.478 0.00 0.00 0.00 3.11
1266 1635 3.187227 GCATTGCGTTTCAGAGAGAGAAA 59.813 43.478 0.00 0.00 32.93 2.52
1274 1643 1.442769 GAGGAGCATTGCGTTTCAGA 58.557 50.000 2.38 0.00 0.00 3.27
1302 1671 1.603456 TTCAGTGGCAGAAAATCGCA 58.397 45.000 0.00 0.00 0.00 5.10
1330 1699 3.546815 CGCACAGGAAATCGATTGATTCC 60.547 47.826 12.25 14.76 44.02 3.01
1640 2041 4.571250 TCGAGCGCGAAATTGACT 57.429 50.000 12.10 0.00 44.78 3.41
1769 2170 2.054687 TACGCAGAACTTGTACGTGG 57.945 50.000 0.00 0.00 37.56 4.94
1793 2194 5.400485 CGTTGGCAAGAAAGAAAGAATCAAG 59.600 40.000 0.00 0.00 0.00 3.02
1797 2198 4.261614 GGTCGTTGGCAAGAAAGAAAGAAT 60.262 41.667 0.00 0.00 0.00 2.40
2083 2489 3.274288 GAATCAGAAAGACGGCAGGAAT 58.726 45.455 0.00 0.00 0.00 3.01
2086 2492 1.002366 CGAATCAGAAAGACGGCAGG 58.998 55.000 0.00 0.00 0.00 4.85
2095 2504 1.896220 AAGCAGGCACGAATCAGAAA 58.104 45.000 0.00 0.00 0.00 2.52
2113 2522 1.025812 AACCGGACGAACATGCAAAA 58.974 45.000 9.46 0.00 0.00 2.44
2115 2524 1.025812 AAAACCGGACGAACATGCAA 58.974 45.000 9.46 0.00 0.00 4.08
2265 2674 3.278519 ACCCTCCAGTACCCCCGA 61.279 66.667 0.00 0.00 0.00 5.14
2289 2698 0.384725 CGTCGTAGTTCGTCACCGTT 60.385 55.000 0.00 0.00 40.80 4.44
2500 2922 2.040412 AGTTCTTGATCCCCCAGAACAC 59.960 50.000 18.80 2.83 40.68 3.32
2539 2961 4.003788 CTGCACGTTCCCGTCCCT 62.004 66.667 0.00 0.00 46.28 4.20
2831 3871 4.404715 TGGATTAGTTGTACTCTACAGGCC 59.595 45.833 0.00 0.00 40.24 5.19
2832 3872 5.593010 CTGGATTAGTTGTACTCTACAGGC 58.407 45.833 0.00 0.00 40.24 4.85
2860 3900 2.801342 CGCTCAAAGAGGAGGTAGATGC 60.801 54.545 0.00 0.00 35.41 3.91
2861 3901 2.223923 CCGCTCAAAGAGGAGGTAGATG 60.224 54.545 0.00 0.00 37.36 2.90
2862 3902 2.035632 CCGCTCAAAGAGGAGGTAGAT 58.964 52.381 0.00 0.00 37.36 1.98
2863 3903 1.475403 CCGCTCAAAGAGGAGGTAGA 58.525 55.000 0.00 0.00 37.36 2.59
2864 3904 0.179097 GCCGCTCAAAGAGGAGGTAG 60.179 60.000 0.52 0.00 37.36 3.18
3069 4189 8.102676 TGACTGAATTGAGATTGGAATGAGTAA 58.897 33.333 0.00 0.00 0.00 2.24
3076 4196 5.072055 TGCTTGACTGAATTGAGATTGGAA 58.928 37.500 0.00 0.00 0.00 3.53
3128 4248 9.849166 GCCTTATCAACAGAATCTAGATAGTAC 57.151 37.037 5.46 0.00 0.00 2.73
3129 4249 9.815306 AGCCTTATCAACAGAATCTAGATAGTA 57.185 33.333 5.46 0.00 0.00 1.82
3130 4250 8.719645 AGCCTTATCAACAGAATCTAGATAGT 57.280 34.615 5.46 2.71 0.00 2.12
3132 4252 9.815306 ACTAGCCTTATCAACAGAATCTAGATA 57.185 33.333 5.46 0.00 0.00 1.98
3133 4253 8.719645 ACTAGCCTTATCAACAGAATCTAGAT 57.280 34.615 0.00 0.00 0.00 1.98
3152 4272 4.216708 AGTTACTCCCACTATGACTAGCC 58.783 47.826 0.00 0.00 0.00 3.93
3153 4273 5.855740 AAGTTACTCCCACTATGACTAGC 57.144 43.478 0.00 0.00 0.00 3.42
3154 4274 8.522542 AGTTAAGTTACTCCCACTATGACTAG 57.477 38.462 0.00 0.00 0.00 2.57
3156 4276 9.490083 AATAGTTAAGTTACTCCCACTATGACT 57.510 33.333 10.09 0.00 29.79 3.41
3165 4285 9.189723 CGCTATGTTAATAGTTAAGTTACTCCC 57.810 37.037 0.00 0.00 38.47 4.30
3166 4286 8.697960 GCGCTATGTTAATAGTTAAGTTACTCC 58.302 37.037 0.00 0.00 38.47 3.85
3167 4287 9.241317 TGCGCTATGTTAATAGTTAAGTTACTC 57.759 33.333 9.73 0.00 38.47 2.59
3168 4288 9.028185 GTGCGCTATGTTAATAGTTAAGTTACT 57.972 33.333 9.73 0.00 38.47 2.24
3169 4289 9.028185 AGTGCGCTATGTTAATAGTTAAGTTAC 57.972 33.333 9.73 0.00 38.47 2.50
3170 4290 9.590451 AAGTGCGCTATGTTAATAGTTAAGTTA 57.410 29.630 9.73 0.00 38.47 2.24
3171 4291 8.488651 AAGTGCGCTATGTTAATAGTTAAGTT 57.511 30.769 9.73 0.00 38.47 2.66
3172 4292 8.488651 AAAGTGCGCTATGTTAATAGTTAAGT 57.511 30.769 9.73 0.00 38.47 2.24
3175 4295 9.806203 TCTTAAAGTGCGCTATGTTAATAGTTA 57.194 29.630 9.73 0.00 38.47 2.24
3176 4296 8.712285 TCTTAAAGTGCGCTATGTTAATAGTT 57.288 30.769 9.73 0.00 38.47 2.24
3177 4297 8.712285 TTCTTAAAGTGCGCTATGTTAATAGT 57.288 30.769 9.73 0.00 38.47 2.12
3178 4298 9.422196 GTTTCTTAAAGTGCGCTATGTTAATAG 57.578 33.333 9.73 0.00 39.12 1.73
3179 4299 9.158233 AGTTTCTTAAAGTGCGCTATGTTAATA 57.842 29.630 9.73 0.00 0.00 0.98
3180 4300 8.040716 AGTTTCTTAAAGTGCGCTATGTTAAT 57.959 30.769 9.73 0.00 0.00 1.40
3181 4301 7.429636 AGTTTCTTAAAGTGCGCTATGTTAA 57.570 32.000 9.73 7.38 0.00 2.01
3182 4302 7.429636 AAGTTTCTTAAAGTGCGCTATGTTA 57.570 32.000 9.73 0.00 0.00 2.41
3183 4303 5.941948 AGTTTCTTAAAGTGCGCTATGTT 57.058 34.783 9.73 0.00 0.00 2.71
3184 4304 5.941948 AAGTTTCTTAAAGTGCGCTATGT 57.058 34.783 9.73 0.00 0.00 2.29
3185 4305 8.015658 AGTAAAAGTTTCTTAAAGTGCGCTATG 58.984 33.333 9.73 0.00 0.00 2.23
3186 4306 8.095937 AGTAAAAGTTTCTTAAAGTGCGCTAT 57.904 30.769 9.73 0.00 0.00 2.97
3187 4307 7.486802 AGTAAAAGTTTCTTAAAGTGCGCTA 57.513 32.000 9.73 0.00 0.00 4.26
3188 4308 6.373186 AGTAAAAGTTTCTTAAAGTGCGCT 57.627 33.333 9.73 0.00 0.00 5.92
3189 4309 8.627428 CATAAGTAAAAGTTTCTTAAAGTGCGC 58.373 33.333 0.00 0.00 0.00 6.09
3190 4310 9.659830 ACATAAGTAAAAGTTTCTTAAAGTGCG 57.340 29.630 2.02 0.00 0.00 5.34
3193 4313 9.961265 GCCACATAAGTAAAAGTTTCTTAAAGT 57.039 29.630 2.02 2.23 0.00 2.66
3194 4314 9.113876 CGCCACATAAGTAAAAGTTTCTTAAAG 57.886 33.333 2.02 1.77 0.00 1.85
3195 4315 8.623030 ACGCCACATAAGTAAAAGTTTCTTAAA 58.377 29.630 2.02 0.00 0.00 1.52
3196 4316 8.071368 CACGCCACATAAGTAAAAGTTTCTTAA 58.929 33.333 2.02 0.00 0.00 1.85
3197 4317 7.227116 ACACGCCACATAAGTAAAAGTTTCTTA 59.773 33.333 0.00 0.00 0.00 2.10
3198 4318 6.038936 ACACGCCACATAAGTAAAAGTTTCTT 59.961 34.615 0.00 0.00 0.00 2.52
3199 4319 5.529800 ACACGCCACATAAGTAAAAGTTTCT 59.470 36.000 0.00 0.00 0.00 2.52
3200 4320 5.754778 ACACGCCACATAAGTAAAAGTTTC 58.245 37.500 0.00 0.00 0.00 2.78
3201 4321 5.761165 ACACGCCACATAAGTAAAAGTTT 57.239 34.783 0.00 0.00 0.00 2.66
3202 4322 6.864360 TTACACGCCACATAAGTAAAAGTT 57.136 33.333 0.00 0.00 0.00 2.66
3203 4323 7.443259 AATTACACGCCACATAAGTAAAAGT 57.557 32.000 0.00 0.00 0.00 2.66
3204 4324 9.997482 ATTAATTACACGCCACATAAGTAAAAG 57.003 29.630 0.00 0.00 0.00 2.27
3205 4325 9.776158 CATTAATTACACGCCACATAAGTAAAA 57.224 29.630 0.00 0.00 0.00 1.52
3206 4326 9.163899 TCATTAATTACACGCCACATAAGTAAA 57.836 29.630 0.00 0.00 0.00 2.01
3207 4327 8.719560 TCATTAATTACACGCCACATAAGTAA 57.280 30.769 0.00 0.00 0.00 2.24
3208 4328 8.198778 TCTCATTAATTACACGCCACATAAGTA 58.801 33.333 0.00 0.00 0.00 2.24
3209 4329 7.045416 TCTCATTAATTACACGCCACATAAGT 58.955 34.615 0.00 0.00 0.00 2.24
3210 4330 7.477144 TCTCATTAATTACACGCCACATAAG 57.523 36.000 0.00 0.00 0.00 1.73
3211 4331 7.551262 ACTTCTCATTAATTACACGCCACATAA 59.449 33.333 0.00 0.00 0.00 1.90
3212 4332 7.011016 CACTTCTCATTAATTACACGCCACATA 59.989 37.037 0.00 0.00 0.00 2.29
3213 4333 5.880332 ACTTCTCATTAATTACACGCCACAT 59.120 36.000 0.00 0.00 0.00 3.21
3214 4334 5.121611 CACTTCTCATTAATTACACGCCACA 59.878 40.000 0.00 0.00 0.00 4.17
3215 4335 5.447279 CCACTTCTCATTAATTACACGCCAC 60.447 44.000 0.00 0.00 0.00 5.01
3216 4336 4.634004 CCACTTCTCATTAATTACACGCCA 59.366 41.667 0.00 0.00 0.00 5.69
3217 4337 4.634443 ACCACTTCTCATTAATTACACGCC 59.366 41.667 0.00 0.00 0.00 5.68
3218 4338 5.796350 ACCACTTCTCATTAATTACACGC 57.204 39.130 0.00 0.00 0.00 5.34
3219 4339 8.246908 TGTTACCACTTCTCATTAATTACACG 57.753 34.615 0.00 0.00 0.00 4.49
3250 4370 7.307514 CTTGGAAAGCGTTATGTTACAGTAACA 60.308 37.037 25.09 25.09 44.55 2.41
3251 4371 6.470557 TGGAAAGCGTTATGTTACAGTAAC 57.529 37.500 15.58 15.58 39.11 2.50
3252 4372 6.148150 CCTTGGAAAGCGTTATGTTACAGTAA 59.852 38.462 0.00 0.00 44.44 2.24
3253 4373 5.640357 CCTTGGAAAGCGTTATGTTACAGTA 59.360 40.000 0.00 0.00 44.44 2.74
3254 4374 4.454504 CCTTGGAAAGCGTTATGTTACAGT 59.545 41.667 0.00 0.00 44.44 3.55
3255 4375 4.671766 GCCTTGGAAAGCGTTATGTTACAG 60.672 45.833 0.00 0.00 44.44 2.74
3256 4376 3.189702 GCCTTGGAAAGCGTTATGTTACA 59.810 43.478 0.00 0.00 44.44 2.41
3257 4377 3.189702 TGCCTTGGAAAGCGTTATGTTAC 59.810 43.478 0.00 0.00 44.44 2.50
3258 4378 3.413327 TGCCTTGGAAAGCGTTATGTTA 58.587 40.909 0.00 0.00 44.44 2.41
3259 4379 2.235016 TGCCTTGGAAAGCGTTATGTT 58.765 42.857 0.00 0.00 44.44 2.71
3260 4380 1.904287 TGCCTTGGAAAGCGTTATGT 58.096 45.000 0.00 0.00 44.44 2.29
3261 4381 2.487762 TCTTGCCTTGGAAAGCGTTATG 59.512 45.455 2.47 0.00 44.44 1.90
3262 4382 2.790433 TCTTGCCTTGGAAAGCGTTAT 58.210 42.857 2.47 0.00 44.44 1.89
3263 4383 2.264005 TCTTGCCTTGGAAAGCGTTA 57.736 45.000 2.47 0.00 44.44 3.18
3264 4384 1.270550 CATCTTGCCTTGGAAAGCGTT 59.729 47.619 2.47 0.00 44.44 4.84
3265 4385 0.883833 CATCTTGCCTTGGAAAGCGT 59.116 50.000 2.47 0.00 44.44 5.07
3266 4386 1.131883 CTCATCTTGCCTTGGAAAGCG 59.868 52.381 2.47 0.00 44.44 4.68
3267 4387 2.163211 GACTCATCTTGCCTTGGAAAGC 59.837 50.000 2.47 0.00 44.44 3.51
3268 4388 3.683802 AGACTCATCTTGCCTTGGAAAG 58.316 45.455 0.87 0.87 45.69 2.62
3269 4389 3.795688 AGACTCATCTTGCCTTGGAAA 57.204 42.857 0.00 0.00 0.00 3.13
3270 4390 3.582647 TGTAGACTCATCTTGCCTTGGAA 59.417 43.478 0.00 0.00 36.29 3.53
3271 4391 3.173151 TGTAGACTCATCTTGCCTTGGA 58.827 45.455 0.00 0.00 36.29 3.53
3272 4392 3.616956 TGTAGACTCATCTTGCCTTGG 57.383 47.619 0.00 0.00 36.29 3.61
3273 4393 3.373439 GCTTGTAGACTCATCTTGCCTTG 59.627 47.826 0.00 0.00 36.29 3.61
3274 4394 3.262915 AGCTTGTAGACTCATCTTGCCTT 59.737 43.478 0.00 0.00 36.29 4.35
3275 4395 2.836981 AGCTTGTAGACTCATCTTGCCT 59.163 45.455 0.00 0.00 36.29 4.75
3276 4396 3.258971 AGCTTGTAGACTCATCTTGCC 57.741 47.619 0.00 0.00 36.29 4.52
3277 4397 8.425577 TTTATTAGCTTGTAGACTCATCTTGC 57.574 34.615 0.00 0.00 36.29 4.01
3283 4403 9.587772 GACTTCATTTATTAGCTTGTAGACTCA 57.412 33.333 0.00 0.00 0.00 3.41
3284 4404 9.036671 GGACTTCATTTATTAGCTTGTAGACTC 57.963 37.037 0.00 0.00 0.00 3.36
3285 4405 8.763601 AGGACTTCATTTATTAGCTTGTAGACT 58.236 33.333 0.00 0.00 0.00 3.24
3286 4406 8.950208 AGGACTTCATTTATTAGCTTGTAGAC 57.050 34.615 0.00 0.00 0.00 2.59
3287 4407 8.982723 AGAGGACTTCATTTATTAGCTTGTAGA 58.017 33.333 0.00 0.00 0.00 2.59
3290 4410 9.553064 CATAGAGGACTTCATTTATTAGCTTGT 57.447 33.333 0.00 0.00 0.00 3.16
3291 4411 9.770097 TCATAGAGGACTTCATTTATTAGCTTG 57.230 33.333 0.00 0.00 0.00 4.01
3292 4412 9.771534 GTCATAGAGGACTTCATTTATTAGCTT 57.228 33.333 0.00 0.00 34.92 3.74
3293 4413 8.928448 TGTCATAGAGGACTTCATTTATTAGCT 58.072 33.333 0.00 0.00 38.61 3.32
3294 4414 8.983724 GTGTCATAGAGGACTTCATTTATTAGC 58.016 37.037 0.00 0.00 38.61 3.09
3298 4418 9.427821 AGTAGTGTCATAGAGGACTTCATTTAT 57.572 33.333 0.00 0.00 38.61 1.40
3299 4419 8.824756 AGTAGTGTCATAGAGGACTTCATTTA 57.175 34.615 0.00 0.00 38.61 1.40
3300 4420 7.726033 AGTAGTGTCATAGAGGACTTCATTT 57.274 36.000 0.00 0.00 38.61 2.32
3301 4421 8.056400 AGTAGTAGTGTCATAGAGGACTTCATT 58.944 37.037 0.00 0.00 38.61 2.57
3302 4422 7.579105 AGTAGTAGTGTCATAGAGGACTTCAT 58.421 38.462 0.00 0.00 38.61 2.57
3303 4423 6.959904 AGTAGTAGTGTCATAGAGGACTTCA 58.040 40.000 0.00 0.00 38.61 3.02
3304 4424 8.995220 CATAGTAGTAGTGTCATAGAGGACTTC 58.005 40.741 0.00 0.00 38.61 3.01
3305 4425 8.496088 ACATAGTAGTAGTGTCATAGAGGACTT 58.504 37.037 0.00 0.00 38.61 3.01
3306 4426 8.036585 ACATAGTAGTAGTGTCATAGAGGACT 57.963 38.462 0.00 0.00 38.61 3.85
3307 4427 8.680039 AACATAGTAGTAGTGTCATAGAGGAC 57.320 38.462 0.00 0.00 38.29 3.85
3308 4428 9.775854 GTAACATAGTAGTAGTGTCATAGAGGA 57.224 37.037 0.00 0.00 0.00 3.71
3309 4429 9.781633 AGTAACATAGTAGTAGTGTCATAGAGG 57.218 37.037 0.00 0.00 0.00 3.69
3314 4434 8.528643 TGCAAAGTAACATAGTAGTAGTGTCAT 58.471 33.333 0.00 0.00 0.00 3.06
3315 4435 7.811236 GTGCAAAGTAACATAGTAGTAGTGTCA 59.189 37.037 0.00 0.00 0.00 3.58
3316 4436 8.027771 AGTGCAAAGTAACATAGTAGTAGTGTC 58.972 37.037 0.00 0.00 0.00 3.67
3317 4437 7.893658 AGTGCAAAGTAACATAGTAGTAGTGT 58.106 34.615 0.00 0.00 0.00 3.55
3347 4467 9.908747 ACATGACACTAGTCTAAGTTACTATCT 57.091 33.333 0.00 0.00 45.20 1.98
3375 4495 9.524496 TGAGGAGTAACTTAAACTAGTGTCATA 57.476 33.333 0.00 0.00 0.00 2.15
3376 4496 8.305317 GTGAGGAGTAACTTAAACTAGTGTCAT 58.695 37.037 0.00 0.00 0.00 3.06
3377 4497 7.504911 AGTGAGGAGTAACTTAAACTAGTGTCA 59.495 37.037 0.00 0.00 0.00 3.58
3378 4498 7.884257 AGTGAGGAGTAACTTAAACTAGTGTC 58.116 38.462 0.00 0.00 0.00 3.67
3379 4499 7.836479 AGTGAGGAGTAACTTAAACTAGTGT 57.164 36.000 0.00 0.00 0.00 3.55
3380 4500 9.790389 CATAGTGAGGAGTAACTTAAACTAGTG 57.210 37.037 0.00 0.00 0.00 2.74
3381 4501 9.750783 TCATAGTGAGGAGTAACTTAAACTAGT 57.249 33.333 0.00 0.00 0.00 2.57
3383 4503 8.964772 GGTCATAGTGAGGAGTAACTTAAACTA 58.035 37.037 0.00 0.00 0.00 2.24
3384 4504 7.453752 TGGTCATAGTGAGGAGTAACTTAAACT 59.546 37.037 0.00 0.00 0.00 2.66
3385 4505 7.609056 TGGTCATAGTGAGGAGTAACTTAAAC 58.391 38.462 0.00 0.00 0.00 2.01
3386 4506 7.578955 GCTGGTCATAGTGAGGAGTAACTTAAA 60.579 40.741 0.00 0.00 0.00 1.52
3387 4507 6.127423 GCTGGTCATAGTGAGGAGTAACTTAA 60.127 42.308 0.00 0.00 0.00 1.85
3388 4508 5.360144 GCTGGTCATAGTGAGGAGTAACTTA 59.640 44.000 0.00 0.00 0.00 2.24
3389 4509 4.160626 GCTGGTCATAGTGAGGAGTAACTT 59.839 45.833 0.00 0.00 0.00 2.66
3390 4510 3.702045 GCTGGTCATAGTGAGGAGTAACT 59.298 47.826 0.00 0.00 0.00 2.24
3391 4511 3.181474 GGCTGGTCATAGTGAGGAGTAAC 60.181 52.174 0.00 0.00 0.00 2.50
3392 4512 3.031736 GGCTGGTCATAGTGAGGAGTAA 58.968 50.000 0.00 0.00 0.00 2.24
3393 4513 2.245028 AGGCTGGTCATAGTGAGGAGTA 59.755 50.000 0.00 0.00 0.00 2.59
3394 4514 1.007721 AGGCTGGTCATAGTGAGGAGT 59.992 52.381 0.00 0.00 0.00 3.85
3395 4515 1.786937 AGGCTGGTCATAGTGAGGAG 58.213 55.000 0.00 0.00 0.00 3.69
3396 4516 3.031736 GTTAGGCTGGTCATAGTGAGGA 58.968 50.000 0.00 0.00 0.00 3.71
3397 4517 2.223829 CGTTAGGCTGGTCATAGTGAGG 60.224 54.545 0.00 0.00 0.00 3.86
3398 4518 2.688446 TCGTTAGGCTGGTCATAGTGAG 59.312 50.000 0.00 0.00 0.00 3.51
3399 4519 2.426024 GTCGTTAGGCTGGTCATAGTGA 59.574 50.000 0.00 0.00 0.00 3.41
3400 4520 2.165641 TGTCGTTAGGCTGGTCATAGTG 59.834 50.000 0.00 0.00 0.00 2.74
3401 4521 2.453521 TGTCGTTAGGCTGGTCATAGT 58.546 47.619 0.00 0.00 0.00 2.12
3402 4522 3.735237 ATGTCGTTAGGCTGGTCATAG 57.265 47.619 0.00 0.00 0.00 2.23
3403 4523 3.449377 TGAATGTCGTTAGGCTGGTCATA 59.551 43.478 0.00 0.00 0.00 2.15
3404 4524 2.236146 TGAATGTCGTTAGGCTGGTCAT 59.764 45.455 0.00 0.00 0.00 3.06
3405 4525 1.621317 TGAATGTCGTTAGGCTGGTCA 59.379 47.619 0.00 0.00 0.00 4.02
3406 4526 2.000447 GTGAATGTCGTTAGGCTGGTC 59.000 52.381 0.00 0.00 0.00 4.02
3407 4527 1.346395 TGTGAATGTCGTTAGGCTGGT 59.654 47.619 0.00 0.00 0.00 4.00
3408 4528 2.093306 TGTGAATGTCGTTAGGCTGG 57.907 50.000 0.00 0.00 0.00 4.85
3409 4529 2.223112 GCATGTGAATGTCGTTAGGCTG 60.223 50.000 0.00 0.00 0.00 4.85
3410 4530 2.009774 GCATGTGAATGTCGTTAGGCT 58.990 47.619 0.00 0.00 0.00 4.58
3411 4531 2.009774 AGCATGTGAATGTCGTTAGGC 58.990 47.619 0.00 0.00 0.00 3.93
3412 4532 3.728864 GCAAGCATGTGAATGTCGTTAGG 60.729 47.826 0.00 0.00 0.00 2.69
3413 4533 3.120234 TGCAAGCATGTGAATGTCGTTAG 60.120 43.478 0.00 0.00 0.00 2.34
3414 4534 2.810852 TGCAAGCATGTGAATGTCGTTA 59.189 40.909 0.00 0.00 0.00 3.18
3415 4535 1.608109 TGCAAGCATGTGAATGTCGTT 59.392 42.857 0.00 0.00 0.00 3.85
3416 4536 1.069022 GTGCAAGCATGTGAATGTCGT 60.069 47.619 0.00 0.00 0.00 4.34
3495 4615 4.393155 CGGCAGTGGCAGCTACCA 62.393 66.667 17.80 0.00 43.71 3.25
3670 4790 2.046892 CTGCTTACCTGCGCCAGT 60.047 61.111 4.18 4.50 35.36 4.00
3672 4792 4.408821 CCCTGCTTACCTGCGCCA 62.409 66.667 4.18 0.00 35.36 5.69
3711 4832 0.034896 GGAGGAAAGAAGCGGTGTCA 59.965 55.000 0.00 0.00 0.00 3.58
3724 4845 2.992124 TTGACAACGACAAGGAGGAA 57.008 45.000 0.00 0.00 0.00 3.36
3732 4853 1.722677 GCCGGTTTTGACAACGACA 59.277 52.632 1.90 0.00 0.00 4.35
3733 4854 1.368374 CGCCGGTTTTGACAACGAC 60.368 57.895 1.90 0.00 0.00 4.34
3734 4855 2.535788 CCGCCGGTTTTGACAACGA 61.536 57.895 1.90 0.00 0.00 3.85
3735 4856 1.847890 ATCCGCCGGTTTTGACAACG 61.848 55.000 1.63 0.00 0.00 4.10
3736 4857 0.109919 GATCCGCCGGTTTTGACAAC 60.110 55.000 1.63 0.00 0.00 3.32
3737 4858 0.250553 AGATCCGCCGGTTTTGACAA 60.251 50.000 1.63 0.00 0.00 3.18
3738 4859 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
3739 4860 1.693083 CGAGATCCGCCGGTTTTGAC 61.693 60.000 1.63 0.00 0.00 3.18
3740 4861 1.447140 CGAGATCCGCCGGTTTTGA 60.447 57.895 1.63 0.00 0.00 2.69
3741 4862 2.461110 CCGAGATCCGCCGGTTTTG 61.461 63.158 1.63 0.00 40.78 2.44
3742 4863 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
3743 4864 4.157120 CCCGAGATCCGCCGGTTT 62.157 66.667 1.63 0.00 43.93 3.27
3745 4866 4.511246 TACCCGAGATCCGCCGGT 62.511 66.667 1.63 11.60 43.93 5.28
3746 4867 3.671411 CTACCCGAGATCCGCCGG 61.671 72.222 0.00 0.00 44.94 6.13
3747 4868 3.671411 CCTACCCGAGATCCGCCG 61.671 72.222 0.00 0.00 36.84 6.46
3748 4869 3.303928 CCCTACCCGAGATCCGCC 61.304 72.222 0.00 0.00 36.84 6.13
3749 4870 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
3750 4871 2.600769 CCCCCTACCCGAGATCCG 60.601 72.222 0.00 0.00 38.18 4.18
3751 4872 1.533513 GACCCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
3752 4873 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
3753 4874 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
3754 4875 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
3758 4879 3.085947 GTTCGGGACCCCCTACCC 61.086 72.222 4.46 0.00 42.67 3.69
3759 4880 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
3760 4881 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
3761 4882 2.864049 ACAGTTCGGGACCCCCTA 59.136 61.111 4.46 0.00 42.67 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.