Multiple sequence alignment - TraesCS2B01G405200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G405200 chr2B 100.000 6642 0 0 1 6642 573204792 573198151 0.000000e+00 12266
1 TraesCS2B01G405200 chr2B 95.843 433 12 1 6216 6642 573184331 573183899 0.000000e+00 695
2 TraesCS2B01G405200 chr2B 93.503 431 12 8 6216 6642 573187087 573186669 1.570000e-175 627
3 TraesCS2B01G405200 chr2B 91.883 308 15 5 5604 5906 573187639 573187337 7.960000e-114 422
4 TraesCS2B01G405200 chr2B 95.152 165 8 0 5904 6068 756177019 756177183 1.840000e-65 261
5 TraesCS2B01G405200 chr2B 93.976 166 10 0 5904 6069 479990092 479990257 1.110000e-62 252
6 TraesCS2B01G405200 chr2B 93.976 166 10 0 5905 6070 711136986 711137151 1.110000e-62 252
7 TraesCS2B01G405200 chr2B 95.238 126 6 0 6517 6642 573182561 573182436 4.060000e-47 200
8 TraesCS2B01G405200 chr2B 87.791 172 17 3 5066 5237 573190089 573189922 1.460000e-46 198
9 TraesCS2B01G405200 chr2B 89.922 129 13 0 5253 5381 573187771 573187643 4.120000e-37 167
10 TraesCS2B01G405200 chr2D 91.739 5762 292 78 31 5671 489644072 489638374 0.000000e+00 7834
11 TraesCS2B01G405200 chr2D 87.586 725 40 19 5099 5821 489595558 489594882 0.000000e+00 795
12 TraesCS2B01G405200 chr2D 94.848 427 21 1 6216 6642 489637943 489637518 0.000000e+00 665
13 TraesCS2B01G405200 chr2D 94.393 428 23 1 6216 6642 489593954 489593527 0.000000e+00 656
14 TraesCS2B01G405200 chr2D 91.081 370 20 2 6216 6585 489574746 489574390 7.740000e-134 488
15 TraesCS2B01G405200 chr2D 91.961 311 13 5 5600 5906 489575238 489574936 6.160000e-115 425
16 TraesCS2B01G405200 chr2D 87.197 289 19 4 5066 5353 489590900 489590629 5.000000e-81 313
17 TraesCS2B01G405200 chr2D 96.471 85 0 2 5824 5906 489594300 489594217 3.230000e-28 137
18 TraesCS2B01G405200 chr2A 90.071 3968 227 78 24 3880 633235172 633231261 0.000000e+00 4990
19 TraesCS2B01G405200 chr2A 93.835 1995 78 10 3885 5868 633231196 633229236 0.000000e+00 2961
20 TraesCS2B01G405200 chr2A 92.308 845 44 7 5064 5906 633224439 633223614 0.000000e+00 1181
21 TraesCS2B01G405200 chr2A 92.272 427 21 6 6216 6642 633223364 633222950 4.430000e-166 595
22 TraesCS2B01G405200 chr2A 95.484 310 14 0 6216 6525 633229036 633228727 4.630000e-136 496
23 TraesCS2B01G405200 chr2A 90.714 140 12 1 6070 6209 633229210 633229072 1.140000e-42 185
24 TraesCS2B01G405200 chr6D 72.497 1698 331 102 1803 3419 312139293 312137651 2.210000e-114 424
25 TraesCS2B01G405200 chr1D 95.122 164 8 0 5904 6067 311986611 311986774 6.610000e-65 259
26 TraesCS2B01G405200 chr1D 94.578 166 9 0 5904 6069 450202052 450202217 2.380000e-64 257
27 TraesCS2B01G405200 chr7D 94.545 165 9 0 5905 6069 235502406 235502570 8.550000e-64 255
28 TraesCS2B01G405200 chr3D 92.486 173 12 1 5902 6073 569577163 569577335 5.140000e-61 246
29 TraesCS2B01G405200 chr3B 91.620 179 12 2 5905 6082 684066210 684066034 1.850000e-60 244
30 TraesCS2B01G405200 chr3B 90.164 183 18 0 5888 6070 812680997 812681179 8.610000e-59 239
31 TraesCS2B01G405200 chr5B 81.325 166 29 2 3095 3259 577695944 577695780 4.180000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G405200 chr2B 573198151 573204792 6641 True 12266.000000 12266 100.000000 1 6642 1 chr2B.!!$R1 6641
1 TraesCS2B01G405200 chr2B 573182436 573190089 7653 True 384.833333 695 92.363333 5066 6642 6 chr2B.!!$R2 1576
2 TraesCS2B01G405200 chr2D 489637518 489644072 6554 True 4249.500000 7834 93.293500 31 6642 2 chr2D.!!$R3 6611
3 TraesCS2B01G405200 chr2D 489590629 489595558 4929 True 475.250000 795 91.411750 5066 6642 4 chr2D.!!$R2 1576
4 TraesCS2B01G405200 chr2D 489574390 489575238 848 True 456.500000 488 91.521000 5600 6585 2 chr2D.!!$R1 985
5 TraesCS2B01G405200 chr2A 633228727 633235172 6445 True 2158.000000 4990 92.526000 24 6525 4 chr2A.!!$R2 6501
6 TraesCS2B01G405200 chr2A 633222950 633224439 1489 True 888.000000 1181 92.290000 5064 6642 2 chr2A.!!$R1 1578
7 TraesCS2B01G405200 chr6D 312137651 312139293 1642 True 424.000000 424 72.497000 1803 3419 1 chr6D.!!$R1 1616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
874 965 0.112995 TGCCTCCATTGTTTGAGCCT 59.887 50.000 0.0 0.0 0.00 4.58 F
1008 1111 0.042581 TGAGTAGTGAGATGGGGGCA 59.957 55.000 0.0 0.0 0.00 5.36 F
1295 1400 0.313043 AAGCTGTGCTGTGCATGTTC 59.687 50.000 0.0 0.0 41.91 3.18 F
2338 2454 0.038166 TCCTGTTGTTCCCCTGCATC 59.962 55.000 0.0 0.0 0.00 3.91 F
2425 2543 1.279271 CTAAGGGACTGGAACCACCTG 59.721 57.143 2.9 0.0 40.86 4.00 F
3918 4187 0.600255 AGTCTTTCCGGTTGCGTCAG 60.600 55.000 0.0 0.0 0.00 3.51 F
4738 5007 0.304705 GTTCTGTTGCAGGTGACACG 59.695 55.000 0.0 0.0 31.51 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2264 0.096628 GCTGCAGAAGATGTTGAGCG 59.903 55.000 20.43 0.0 0.00 5.03 R
2175 2289 2.783135 TCAACACAAATGCTCTCTCCC 58.217 47.619 0.00 0.0 0.00 4.30 R
2861 3023 4.161189 TCACTTCCTGCCAAATCAACAAAA 59.839 37.500 0.00 0.0 0.00 2.44 R
3601 3789 0.185901 AGCACATGTTCCCAAGTGGT 59.814 50.000 0.00 0.0 43.76 4.16 R
3948 4217 1.207089 TCCCAGAAGCCTTCATGTACG 59.793 52.381 7.29 0.0 0.00 3.67 R
5607 8021 0.969894 ACGGCCATATCTCCAGCTAC 59.030 55.000 2.24 0.0 0.00 3.58 R
5661 8075 1.001706 GGAACAACGAAAACCTCCTGC 60.002 52.381 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 0.883370 AAGGAAAGCAACCGTCGTCC 60.883 55.000 0.00 0.00 0.00 4.79
88 89 4.697756 CCGAAACGGCCAGCCAGA 62.698 66.667 9.78 0.00 41.17 3.86
89 90 2.436646 CGAAACGGCCAGCCAGAT 60.437 61.111 9.78 0.00 35.37 2.90
91 92 2.436646 AAACGGCCAGCCAGATCG 60.437 61.111 9.78 0.00 35.37 3.69
92 93 3.254024 AAACGGCCAGCCAGATCGT 62.254 57.895 9.78 0.00 35.37 3.73
93 94 3.958147 AACGGCCAGCCAGATCGTG 62.958 63.158 9.78 0.00 34.18 4.35
354 388 1.658686 CGAGCGTCTTCCTGTAGGCT 61.659 60.000 0.00 0.00 34.44 4.58
362 396 2.494870 TCTTCCTGTAGGCTCGGTAAAC 59.505 50.000 0.00 0.00 34.44 2.01
388 422 2.158519 CGCCATTATTTACCCCCTTCCT 60.159 50.000 0.00 0.00 0.00 3.36
428 468 8.192110 TGAGCATTACATATTTACGTACAGACA 58.808 33.333 0.00 0.00 0.00 3.41
591 631 3.368531 GGTGGGGCGATAGAATATGTCTC 60.369 52.174 0.00 0.00 37.84 3.36
615 655 4.356979 CGTCCTAGGGAAGCAGGA 57.643 61.111 9.46 0.00 38.66 3.86
653 713 4.082523 TAGCTGCCAGTCGGTGCC 62.083 66.667 0.00 0.00 35.41 5.01
813 904 3.508840 GCTCCCCGCCACAATTCG 61.509 66.667 0.00 0.00 0.00 3.34
814 905 2.046314 CTCCCCGCCACAATTCGT 60.046 61.111 0.00 0.00 0.00 3.85
815 906 1.219664 CTCCCCGCCACAATTCGTA 59.780 57.895 0.00 0.00 0.00 3.43
816 907 0.810031 CTCCCCGCCACAATTCGTAG 60.810 60.000 0.00 0.00 0.00 3.51
817 908 1.817941 CCCCGCCACAATTCGTAGG 60.818 63.158 0.00 0.00 0.00 3.18
818 909 1.219664 CCCGCCACAATTCGTAGGA 59.780 57.895 0.00 0.00 0.00 2.94
853 944 0.704664 GTTCCTTGATGGGTTCCCCT 59.295 55.000 5.34 0.00 45.70 4.79
855 946 1.466858 TCCTTGATGGGTTCCCCTTT 58.533 50.000 5.34 0.00 45.70 3.11
856 947 1.077005 TCCTTGATGGGTTCCCCTTTG 59.923 52.381 5.34 0.00 45.70 2.77
857 948 0.897621 CTTGATGGGTTCCCCTTTGC 59.102 55.000 5.34 0.00 45.70 3.68
860 951 0.684479 GATGGGTTCCCCTTTGCCTC 60.684 60.000 5.34 0.00 45.70 4.70
862 953 2.851045 GGTTCCCCTTTGCCTCCA 59.149 61.111 0.00 0.00 0.00 3.86
864 955 0.252239 GGTTCCCCTTTGCCTCCATT 60.252 55.000 0.00 0.00 0.00 3.16
865 956 0.897621 GTTCCCCTTTGCCTCCATTG 59.102 55.000 0.00 0.00 0.00 2.82
866 957 0.486879 TTCCCCTTTGCCTCCATTGT 59.513 50.000 0.00 0.00 0.00 2.71
867 958 0.486879 TCCCCTTTGCCTCCATTGTT 59.513 50.000 0.00 0.00 0.00 2.83
869 960 1.002315 CCCCTTTGCCTCCATTGTTTG 59.998 52.381 0.00 0.00 0.00 2.93
871 962 2.028748 CCCTTTGCCTCCATTGTTTGAG 60.029 50.000 0.00 0.00 0.00 3.02
872 963 2.611224 CCTTTGCCTCCATTGTTTGAGC 60.611 50.000 0.00 0.00 0.00 4.26
874 965 0.112995 TGCCTCCATTGTTTGAGCCT 59.887 50.000 0.00 0.00 0.00 4.58
875 966 0.529378 GCCTCCATTGTTTGAGCCTG 59.471 55.000 0.00 0.00 0.00 4.85
876 967 1.915141 CCTCCATTGTTTGAGCCTGT 58.085 50.000 0.00 0.00 0.00 4.00
877 968 2.242043 CCTCCATTGTTTGAGCCTGTT 58.758 47.619 0.00 0.00 0.00 3.16
878 969 2.629617 CCTCCATTGTTTGAGCCTGTTT 59.370 45.455 0.00 0.00 0.00 2.83
879 970 3.070015 CCTCCATTGTTTGAGCCTGTTTT 59.930 43.478 0.00 0.00 0.00 2.43
895 986 2.364647 TGTTTTGCATTCATGTGCTCCA 59.635 40.909 9.44 0.00 45.27 3.86
897 988 1.913778 TTGCATTCATGTGCTCCAGT 58.086 45.000 9.44 0.00 45.27 4.00
900 991 2.089980 GCATTCATGTGCTCCAGTTCT 58.910 47.619 1.20 0.00 41.82 3.01
918 1009 4.711846 AGTTCTTTTGTTTTCTCTTGGCCT 59.288 37.500 3.32 0.00 0.00 5.19
920 1011 4.023291 TCTTTTGTTTTCTCTTGGCCTGT 58.977 39.130 3.32 0.00 0.00 4.00
923 1014 2.733956 TGTTTTCTCTTGGCCTGTGTT 58.266 42.857 3.32 0.00 0.00 3.32
924 1015 2.426738 TGTTTTCTCTTGGCCTGTGTTG 59.573 45.455 3.32 0.00 0.00 3.33
938 1033 5.399013 GCCTGTGTTGTAATTAATGGTGTC 58.601 41.667 0.00 0.00 0.00 3.67
979 1082 4.095400 GGGGAGAGGGGGAGCAGA 62.095 72.222 0.00 0.00 0.00 4.26
982 1085 1.457455 GGAGAGGGGGAGCAGAGAG 60.457 68.421 0.00 0.00 0.00 3.20
983 1086 2.042025 AGAGGGGGAGCAGAGAGC 60.042 66.667 0.00 0.00 46.19 4.09
1008 1111 0.042581 TGAGTAGTGAGATGGGGGCA 59.957 55.000 0.00 0.00 0.00 5.36
1110 1213 0.320374 TACTGGTTTCGGTGAGGCTG 59.680 55.000 0.00 0.00 33.86 4.85
1185 1288 1.667830 CAGCGACACCACCGTCATT 60.668 57.895 0.00 0.00 35.54 2.57
1295 1400 0.313043 AAGCTGTGCTGTGCATGTTC 59.687 50.000 0.00 0.00 41.91 3.18
1338 1443 8.506437 CATTACTTCTGCTGTTTCTGTTATCAA 58.494 33.333 0.00 0.00 0.00 2.57
1388 1493 4.323537 GCCACTAGCGTTTTAGAAACTC 57.676 45.455 0.00 0.00 0.00 3.01
1397 1502 6.371389 AGCGTTTTAGAAACTCTACATTTGC 58.629 36.000 2.53 0.00 0.00 3.68
1456 1565 5.248477 ACATGTCTGGAGTACCAATTACAGT 59.752 40.000 0.00 0.00 46.32 3.55
1538 1647 4.161565 ACCTCGATTAACCTCATTACTGCA 59.838 41.667 0.00 0.00 0.00 4.41
1551 1660 4.452114 TCATTACTGCACATGTTCTGACAC 59.548 41.667 9.21 0.00 38.91 3.67
1601 1712 8.140112 AGGTATGGGAGCTACTTATCATTAAG 57.860 38.462 0.00 0.00 40.62 1.85
1607 1719 7.773690 TGGGAGCTACTTATCATTAAGAAAACC 59.226 37.037 0.00 0.00 38.56 3.27
1649 1761 8.253810 TGTTCAGATTTTGTACAAATCAAACCA 58.746 29.630 21.17 10.40 38.70 3.67
1695 1807 9.778741 GAGTTTAATCATATAATCACTGGGACA 57.221 33.333 0.00 0.00 0.00 4.02
1736 1848 1.035139 AGGGCTCTGCACAAACTTTG 58.965 50.000 0.00 0.00 32.33 2.77
1884 1996 2.418884 GGTTGCCCTCTCTGTAGTTAGC 60.419 54.545 0.00 0.00 0.00 3.09
1903 2015 3.408634 AGCGGCATTAACTGTTAAGTGT 58.591 40.909 17.05 0.00 36.51 3.55
1930 2042 8.277918 AGACATTCTGCCTATTTTTCTCCTATT 58.722 33.333 0.00 0.00 0.00 1.73
1951 2063 3.306917 TGTTTAGATCAAAGCGACGGA 57.693 42.857 0.00 0.00 0.00 4.69
2018 2130 4.941263 GCATATGGTCAAACAAGTAGTGGA 59.059 41.667 4.56 0.00 0.00 4.02
2152 2264 7.865706 ATCTGTAACCATTGGTCTGAAATAC 57.134 36.000 9.22 7.42 33.12 1.89
2165 2279 5.220491 GGTCTGAAATACGCTCAACATCTTC 60.220 44.000 0.00 0.00 0.00 2.87
2175 2289 0.167470 CAACATCTTCTGCAGCACGG 59.833 55.000 9.47 0.00 0.00 4.94
2338 2454 0.038166 TCCTGTTGTTCCCCTGCATC 59.962 55.000 0.00 0.00 0.00 3.91
2358 2476 5.277683 GCATCACTAATGGCTTGATACTGTG 60.278 44.000 0.00 0.00 35.77 3.66
2425 2543 1.279271 CTAAGGGACTGGAACCACCTG 59.721 57.143 2.90 0.00 40.86 4.00
2471 2589 5.467035 AGGTGGGATGTTGTTTGTATTTG 57.533 39.130 0.00 0.00 0.00 2.32
2511 2635 4.691216 GTGGCGATTACCCTCATCTTATTC 59.309 45.833 0.00 0.00 0.00 1.75
2578 2702 5.180680 ACATACTTAAACGAAAACAGCTCCC 59.819 40.000 0.00 0.00 0.00 4.30
2642 2766 3.057596 TGCATGTAAAAAGGAAGGCTTCG 60.058 43.478 20.26 4.34 0.00 3.79
2746 2907 3.714798 TCTTGGGTAAGGACAAGTCAACT 59.285 43.478 2.29 0.00 43.40 3.16
2781 2942 6.586844 GCTAGTGTGGTAAGAACTAAGAACAG 59.413 42.308 0.00 0.00 0.00 3.16
2787 2948 9.085645 TGTGGTAAGAACTAAGAACAGAGATTA 57.914 33.333 0.00 0.00 0.00 1.75
2788 2949 9.356433 GTGGTAAGAACTAAGAACAGAGATTAC 57.644 37.037 0.00 0.00 0.00 1.89
2789 2950 9.310449 TGGTAAGAACTAAGAACAGAGATTACT 57.690 33.333 0.00 0.00 0.00 2.24
2790 2951 9.791820 GGTAAGAACTAAGAACAGAGATTACTC 57.208 37.037 0.00 0.00 42.90 2.59
2861 3023 5.518848 TCTTTTGTTGTCATGTGCAGAAT 57.481 34.783 0.00 0.00 0.00 2.40
2995 3157 6.212888 TCGTAAACTAAGGTTACATCCCTC 57.787 41.667 0.00 0.00 34.90 4.30
3043 3205 4.900635 TTCAGTGGAAAGTTTCTCTTGC 57.099 40.909 15.05 0.00 36.40 4.01
3058 3221 9.174166 AGTTTCTCTTGCTTAAAAAGTCTTGTA 57.826 29.630 0.00 0.00 0.00 2.41
3232 3411 5.708736 TGGAGCAATCAAGAAATACCCTA 57.291 39.130 0.00 0.00 0.00 3.53
3382 3561 3.526931 TCCTATTCCAGTCTTGAAGCG 57.473 47.619 0.00 0.00 0.00 4.68
3444 3623 4.065088 GCTACTTCTGACATTTGTGTGGA 58.935 43.478 0.00 0.00 0.00 4.02
3448 3627 6.469782 ACTTCTGACATTTGTGTGGATTTT 57.530 33.333 0.00 0.00 0.00 1.82
3516 3704 3.060602 AGTCGCAGAGCTTACTGTTTTC 58.939 45.455 4.51 0.00 36.95 2.29
3631 3819 2.044555 CATGTGCTCCCAGGTGCAG 61.045 63.158 13.44 0.00 43.78 4.41
3648 3845 3.503748 GTGCAGCCTTGAATTACTCAGTT 59.496 43.478 0.00 0.00 34.81 3.16
3650 3847 4.937620 TGCAGCCTTGAATTACTCAGTTAG 59.062 41.667 0.00 0.00 34.81 2.34
3743 3952 7.222224 GTGATGGTGTAGAAGTTTAATAGACCG 59.778 40.741 0.00 0.00 36.02 4.79
3808 4017 2.363680 CGTGATCTGGCTCAATCTAGGT 59.636 50.000 0.00 0.00 0.00 3.08
3880 4089 5.063880 CCCTGGTATATGCACTTTCTTACC 58.936 45.833 0.00 0.00 0.00 2.85
3881 4090 5.397447 CCCTGGTATATGCACTTTCTTACCA 60.397 44.000 0.00 0.00 37.38 3.25
3882 4091 6.299141 CCTGGTATATGCACTTTCTTACCAT 58.701 40.000 10.05 0.00 38.61 3.55
3913 4182 4.313282 AGTTAACTAGTCTTTCCGGTTGC 58.687 43.478 6.26 0.00 0.00 4.17
3918 4187 0.600255 AGTCTTTCCGGTTGCGTCAG 60.600 55.000 0.00 0.00 0.00 3.51
3924 4193 2.604174 CCGGTTGCGTCAGAACCAC 61.604 63.158 0.00 0.00 42.75 4.16
3926 4195 1.831389 CGGTTGCGTCAGAACCACTG 61.831 60.000 0.00 0.00 42.75 3.66
3948 4217 8.439286 CACTGAAGTTTATGCTTTCTCTCTTAC 58.561 37.037 0.00 0.00 0.00 2.34
3956 4225 5.638596 TGCTTTCTCTCTTACGTACATGA 57.361 39.130 0.00 0.00 0.00 3.07
4008 4277 0.816825 CCCCAGCCATGTGAAGATCG 60.817 60.000 0.00 0.00 0.00 3.69
4011 4280 1.407299 CCAGCCATGTGAAGATCGGAA 60.407 52.381 0.00 0.00 0.00 4.30
4123 4392 7.606456 GGGTCTCAACAGTCTGAAAATAATGTA 59.394 37.037 6.91 0.00 0.00 2.29
4135 4404 9.502091 TCTGAAAATAATGTACAGTTTGCTACT 57.498 29.630 0.00 0.00 37.68 2.57
4159 4428 4.201891 CCATTGAGTTATTCAGTCAGCAGC 60.202 45.833 0.00 0.00 36.14 5.25
4199 4468 2.398588 CCCCAACCACTAGCAGAGATA 58.601 52.381 0.00 0.00 0.00 1.98
4363 4632 5.050490 GCTAGTACACATGGAAACGATGAT 58.950 41.667 0.00 0.00 0.00 2.45
4366 4635 4.876107 AGTACACATGGAAACGATGATTCC 59.124 41.667 0.00 0.00 45.39 3.01
4372 4641 2.618053 GGAAACGATGATTCCAGACGT 58.382 47.619 0.00 0.00 44.70 4.34
4374 4643 3.250744 GAAACGATGATTCCAGACGTGA 58.749 45.455 0.00 0.00 38.49 4.35
4402 4671 2.457598 TCTACTGTTACCCTGGAGCAG 58.542 52.381 0.00 0.00 0.00 4.24
4444 4713 3.157087 ACCTTTTGCCAATCTTGTCGAT 58.843 40.909 0.00 0.00 0.00 3.59
4453 4722 4.262207 GCCAATCTTGTCGATGATCTAGGA 60.262 45.833 0.00 0.00 31.20 2.94
4567 4836 0.405198 AGGATGATTGCACACCACCA 59.595 50.000 0.00 0.00 0.00 4.17
4651 4920 4.313282 TGAACTTTGATGCAGAGAGTGAG 58.687 43.478 0.00 0.00 0.00 3.51
4738 5007 0.304705 GTTCTGTTGCAGGTGACACG 59.695 55.000 0.00 0.00 31.51 4.49
4747 5016 2.224426 TGCAGGTGACACGGAATTTACT 60.224 45.455 0.00 0.00 0.00 2.24
4765 5034 5.895636 TTACTGGCATAGGTGAATTTGTG 57.104 39.130 0.00 0.00 0.00 3.33
4828 5097 3.502211 GTGGTCAGGTGTGGAACTATTTG 59.498 47.826 0.00 0.00 38.04 2.32
4829 5098 3.137544 TGGTCAGGTGTGGAACTATTTGT 59.862 43.478 0.00 0.00 38.04 2.83
4830 5099 3.751698 GGTCAGGTGTGGAACTATTTGTC 59.248 47.826 0.00 0.00 38.04 3.18
4832 5101 5.063880 GTCAGGTGTGGAACTATTTGTCTT 58.936 41.667 0.00 0.00 38.04 3.01
4878 5156 3.828451 AGCACATTGGGGTAATATGATGC 59.172 43.478 0.00 0.00 32.01 3.91
5015 5293 1.729881 GCGATGGCCACTGGAATTC 59.270 57.895 8.16 0.00 0.00 2.17
5251 7664 6.908870 TTCAAGGTAAGTCATTGATCATCG 57.091 37.500 0.00 0.00 44.42 3.84
5269 7682 3.667497 TCGCATTTCTCACTTCTCTGT 57.333 42.857 0.00 0.00 0.00 3.41
5291 7705 1.471119 TACGGCACTCGAATTCCTCT 58.529 50.000 0.00 0.00 42.43 3.69
5306 7720 8.582437 TCGAATTCCTCTTGAAGAAAACTACTA 58.418 33.333 0.00 0.00 36.14 1.82
5607 8021 2.202797 CAGCCGACGATCCCACAG 60.203 66.667 0.00 0.00 0.00 3.66
5661 8075 4.646960 TGATTACGACATGCAAATGAACG 58.353 39.130 0.00 0.33 0.00 3.95
5734 8177 1.806542 AGCATTGTCGGTTGTAGCTTG 59.193 47.619 0.00 0.00 0.00 4.01
5746 8189 2.196595 TGTAGCTTGTAGGCCCTTCAT 58.803 47.619 0.00 0.00 0.00 2.57
5809 8252 7.121974 ACTCAATCTTACAACATCAAGTTCG 57.878 36.000 0.00 0.00 38.74 3.95
5810 8253 6.929049 ACTCAATCTTACAACATCAAGTTCGA 59.071 34.615 0.00 0.00 38.74 3.71
5900 8935 4.095610 GTGTGTTCGTCTGTTTCCAAAAG 58.904 43.478 0.00 0.00 0.00 2.27
5906 8941 6.202188 TGTTCGTCTGTTTCCAAAAGAGATAC 59.798 38.462 3.06 3.74 0.00 2.24
5908 8943 6.157211 TCGTCTGTTTCCAAAAGAGATACTC 58.843 40.000 3.06 0.00 0.00 2.59
5910 8945 5.644206 GTCTGTTTCCAAAAGAGATACTCCC 59.356 44.000 3.06 0.00 0.00 4.30
5911 8946 5.548056 TCTGTTTCCAAAAGAGATACTCCCT 59.452 40.000 0.00 0.00 0.00 4.20
5912 8947 5.805728 TGTTTCCAAAAGAGATACTCCCTC 58.194 41.667 0.00 0.00 0.00 4.30
5913 8948 5.186942 GTTTCCAAAAGAGATACTCCCTCC 58.813 45.833 0.00 0.00 0.00 4.30
5914 8949 3.031736 TCCAAAAGAGATACTCCCTCCG 58.968 50.000 0.00 0.00 0.00 4.63
5915 8950 2.766828 CCAAAAGAGATACTCCCTCCGT 59.233 50.000 0.00 0.00 0.00 4.69
5916 8951 3.197983 CCAAAAGAGATACTCCCTCCGTT 59.802 47.826 0.00 0.00 0.00 4.44
5917 8952 4.323562 CCAAAAGAGATACTCCCTCCGTTT 60.324 45.833 0.00 0.00 0.00 3.60
5918 8953 4.739587 AAAGAGATACTCCCTCCGTTTC 57.260 45.455 0.00 0.00 0.00 2.78
5919 8954 3.673543 AGAGATACTCCCTCCGTTTCT 57.326 47.619 0.00 0.00 0.00 2.52
5920 8955 4.792513 AGAGATACTCCCTCCGTTTCTA 57.207 45.455 0.00 0.00 0.00 2.10
5921 8956 5.126699 AGAGATACTCCCTCCGTTTCTAA 57.873 43.478 0.00 0.00 0.00 2.10
5922 8957 5.516984 AGAGATACTCCCTCCGTTTCTAAA 58.483 41.667 0.00 0.00 0.00 1.85
5923 8958 6.137559 AGAGATACTCCCTCCGTTTCTAAAT 58.862 40.000 0.00 0.00 0.00 1.40
5924 8959 7.296098 AGAGATACTCCCTCCGTTTCTAAATA 58.704 38.462 0.00 0.00 0.00 1.40
5925 8960 7.951245 AGAGATACTCCCTCCGTTTCTAAATAT 59.049 37.037 0.00 0.00 0.00 1.28
5926 8961 9.240734 GAGATACTCCCTCCGTTTCTAAATATA 57.759 37.037 0.00 0.00 0.00 0.86
5927 8962 9.597681 AGATACTCCCTCCGTTTCTAAATATAA 57.402 33.333 0.00 0.00 0.00 0.98
5928 8963 9.857957 GATACTCCCTCCGTTTCTAAATATAAG 57.142 37.037 0.00 0.00 0.00 1.73
5929 8964 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
5930 8965 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
5931 8966 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
5932 8967 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
5933 8968 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
5934 8969 8.827677 CCCTCCGTTTCTAAATATAAGTCTTTG 58.172 37.037 0.00 0.00 0.00 2.77
5935 8970 9.379791 CCTCCGTTTCTAAATATAAGTCTTTGT 57.620 33.333 0.00 0.00 0.00 2.83
5953 8988 9.646427 AGTCTTTGTAGAGATTTCACTATGAAC 57.354 33.333 0.00 0.00 35.89 3.18
5954 8989 8.874816 GTCTTTGTAGAGATTTCACTATGAACC 58.125 37.037 0.00 0.00 35.89 3.62
5955 8990 8.593679 TCTTTGTAGAGATTTCACTATGAACCA 58.406 33.333 0.00 0.00 35.89 3.67
5956 8991 8.547967 TTTGTAGAGATTTCACTATGAACCAC 57.452 34.615 0.00 0.00 35.89 4.16
5957 8992 7.239763 TGTAGAGATTTCACTATGAACCACA 57.760 36.000 0.00 0.00 35.89 4.17
5958 8993 7.851228 TGTAGAGATTTCACTATGAACCACAT 58.149 34.615 0.00 0.00 35.89 3.21
5959 8994 8.977412 TGTAGAGATTTCACTATGAACCACATA 58.023 33.333 0.00 0.00 35.89 2.29
5960 8995 9.250624 GTAGAGATTTCACTATGAACCACATAC 57.749 37.037 0.00 0.00 35.89 2.39
5961 8996 6.980978 AGAGATTTCACTATGAACCACATACG 59.019 38.462 0.00 0.00 35.89 3.06
5962 8997 6.049149 AGATTTCACTATGAACCACATACGG 58.951 40.000 0.00 0.00 35.89 4.02
5963 8998 5.408880 TTTCACTATGAACCACATACGGA 57.591 39.130 0.00 0.00 35.89 4.69
5964 8999 5.607939 TTCACTATGAACCACATACGGAT 57.392 39.130 0.00 0.00 40.07 4.18
5965 9000 4.944048 TCACTATGAACCACATACGGATG 58.056 43.478 5.94 5.94 40.07 3.51
5966 9001 5.105106 TTCACTATGAACCACATACGGATGT 60.105 40.000 7.68 7.68 37.89 3.06
5967 9002 5.595133 TCACTATGAACCACATACGGATGTA 59.405 40.000 14.23 0.00 44.82 2.29
5968 9003 6.266786 TCACTATGAACCACATACGGATGTAT 59.733 38.462 14.23 5.54 44.82 2.29
5969 9004 7.449086 TCACTATGAACCACATACGGATGTATA 59.551 37.037 14.23 6.48 44.82 1.47
5970 9005 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
5971 9006 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
5972 9007 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
5973 9008 7.165460 TGAACCACATACGGATGTATATAGG 57.835 40.000 14.23 12.65 44.82 2.57
5974 9009 6.722590 TGAACCACATACGGATGTATATAGGT 59.277 38.462 14.23 13.36 44.82 3.08
5975 9010 6.525578 ACCACATACGGATGTATATAGGTG 57.474 41.667 14.23 0.00 44.82 4.00
5976 9011 5.105473 ACCACATACGGATGTATATAGGTGC 60.105 44.000 14.23 0.00 44.82 5.01
5977 9012 5.105513 CCACATACGGATGTATATAGGTGCA 60.106 44.000 14.23 0.00 44.82 4.57
5978 9013 6.406961 CCACATACGGATGTATATAGGTGCAT 60.407 42.308 14.23 0.00 44.82 3.96
5979 9014 7.041721 CACATACGGATGTATATAGGTGCATT 58.958 38.462 14.23 0.00 44.82 3.56
5980 9015 7.549134 CACATACGGATGTATATAGGTGCATTT 59.451 37.037 14.23 0.00 44.82 2.32
5981 9016 8.100791 ACATACGGATGTATATAGGTGCATTTT 58.899 33.333 12.79 0.00 44.77 1.82
5982 9017 9.594478 CATACGGATGTATATAGGTGCATTTTA 57.406 33.333 0.00 0.00 39.28 1.52
5984 9019 8.547967 ACGGATGTATATAGGTGCATTTTAAG 57.452 34.615 0.00 0.00 0.00 1.85
5985 9020 8.154856 ACGGATGTATATAGGTGCATTTTAAGT 58.845 33.333 0.00 0.00 0.00 2.24
5986 9021 8.999431 CGGATGTATATAGGTGCATTTTAAGTT 58.001 33.333 0.00 0.00 0.00 2.66
5997 9032 9.860898 AGGTGCATTTTAAGTTTAGATTCAATC 57.139 29.630 0.00 0.00 0.00 2.67
5998 9033 9.638239 GGTGCATTTTAAGTTTAGATTCAATCA 57.362 29.630 0.00 0.00 0.00 2.57
6008 9043 8.679288 AGTTTAGATTCAATCATTTTGCTTCG 57.321 30.769 0.00 0.00 0.00 3.79
6009 9044 8.299570 AGTTTAGATTCAATCATTTTGCTTCGT 58.700 29.630 0.00 0.00 0.00 3.85
6010 9045 9.554724 GTTTAGATTCAATCATTTTGCTTCGTA 57.445 29.630 0.00 0.00 0.00 3.43
6012 9047 9.720667 TTAGATTCAATCATTTTGCTTCGTATG 57.279 29.630 0.00 0.00 0.00 2.39
6013 9048 7.765307 AGATTCAATCATTTTGCTTCGTATGT 58.235 30.769 0.00 0.00 0.00 2.29
6014 9049 8.892723 AGATTCAATCATTTTGCTTCGTATGTA 58.107 29.630 0.00 0.00 0.00 2.29
6015 9050 9.162793 GATTCAATCATTTTGCTTCGTATGTAG 57.837 33.333 0.00 0.00 0.00 2.74
6016 9051 7.609760 TCAATCATTTTGCTTCGTATGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
6017 9052 7.684670 TCAATCATTTTGCTTCGTATGTAGTC 58.315 34.615 0.00 0.00 0.00 2.59
6018 9053 7.549134 TCAATCATTTTGCTTCGTATGTAGTCT 59.451 33.333 0.00 0.00 0.00 3.24
6019 9054 8.817100 CAATCATTTTGCTTCGTATGTAGTCTA 58.183 33.333 0.00 0.00 0.00 2.59
6020 9055 9.547753 AATCATTTTGCTTCGTATGTAGTCTAT 57.452 29.630 0.00 0.00 0.00 1.98
6021 9056 8.575565 TCATTTTGCTTCGTATGTAGTCTATC 57.424 34.615 0.00 0.00 0.00 2.08
6022 9057 8.414003 TCATTTTGCTTCGTATGTAGTCTATCT 58.586 33.333 0.00 0.00 0.00 1.98
6023 9058 7.987268 TTTTGCTTCGTATGTAGTCTATCTG 57.013 36.000 0.00 0.00 0.00 2.90
6024 9059 5.690997 TGCTTCGTATGTAGTCTATCTGG 57.309 43.478 0.00 0.00 0.00 3.86
6025 9060 5.131067 TGCTTCGTATGTAGTCTATCTGGT 58.869 41.667 0.00 0.00 0.00 4.00
6026 9061 5.008712 TGCTTCGTATGTAGTCTATCTGGTG 59.991 44.000 0.00 0.00 0.00 4.17
6027 9062 5.238868 GCTTCGTATGTAGTCTATCTGGTGA 59.761 44.000 0.00 0.00 0.00 4.02
6028 9063 6.238676 GCTTCGTATGTAGTCTATCTGGTGAA 60.239 42.308 0.00 0.00 0.00 3.18
6029 9064 7.634671 TTCGTATGTAGTCTATCTGGTGAAA 57.365 36.000 0.00 0.00 0.00 2.69
6030 9065 7.818997 TCGTATGTAGTCTATCTGGTGAAAT 57.181 36.000 0.00 0.00 0.00 2.17
6031 9066 7.872881 TCGTATGTAGTCTATCTGGTGAAATC 58.127 38.462 0.00 0.00 0.00 2.17
6032 9067 7.720074 TCGTATGTAGTCTATCTGGTGAAATCT 59.280 37.037 0.00 0.00 0.00 2.40
6033 9068 8.018520 CGTATGTAGTCTATCTGGTGAAATCTC 58.981 40.741 0.00 0.00 0.00 2.75
6034 9069 9.073475 GTATGTAGTCTATCTGGTGAAATCTCT 57.927 37.037 0.00 0.00 0.00 3.10
6036 9071 8.453238 TGTAGTCTATCTGGTGAAATCTCTAC 57.547 38.462 0.00 0.00 0.00 2.59
6037 9072 8.053355 TGTAGTCTATCTGGTGAAATCTCTACA 58.947 37.037 0.00 0.00 33.27 2.74
6038 9073 7.962995 AGTCTATCTGGTGAAATCTCTACAA 57.037 36.000 0.00 0.00 0.00 2.41
6039 9074 8.367660 AGTCTATCTGGTGAAATCTCTACAAA 57.632 34.615 0.00 0.00 0.00 2.83
6040 9075 8.474025 AGTCTATCTGGTGAAATCTCTACAAAG 58.526 37.037 0.00 0.00 0.00 2.77
6041 9076 8.470805 GTCTATCTGGTGAAATCTCTACAAAGA 58.529 37.037 0.00 0.00 0.00 2.52
6042 9077 8.470805 TCTATCTGGTGAAATCTCTACAAAGAC 58.529 37.037 0.00 0.00 0.00 3.01
6043 9078 6.672266 TCTGGTGAAATCTCTACAAAGACT 57.328 37.500 0.00 0.00 0.00 3.24
6044 9079 7.067496 TCTGGTGAAATCTCTACAAAGACTT 57.933 36.000 0.00 0.00 0.00 3.01
6045 9080 8.190326 TCTGGTGAAATCTCTACAAAGACTTA 57.810 34.615 0.00 0.00 0.00 2.24
6046 9081 8.816894 TCTGGTGAAATCTCTACAAAGACTTAT 58.183 33.333 0.00 0.00 0.00 1.73
6061 9096 9.892130 ACAAAGACTTATATTTAGGAACAGAGG 57.108 33.333 0.00 0.00 0.00 3.69
6062 9097 9.331282 CAAAGACTTATATTTAGGAACAGAGGG 57.669 37.037 0.00 0.00 0.00 4.30
6063 9098 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
6064 9099 8.485578 AGACTTATATTTAGGAACAGAGGGAG 57.514 38.462 0.00 0.00 0.00 4.30
6065 9100 8.068733 AGACTTATATTTAGGAACAGAGGGAGT 58.931 37.037 0.00 0.00 0.00 3.85
6066 9101 9.364653 GACTTATATTTAGGAACAGAGGGAGTA 57.635 37.037 0.00 0.00 0.00 2.59
6067 9102 9.145442 ACTTATATTTAGGAACAGAGGGAGTAC 57.855 37.037 0.00 0.00 0.00 2.73
6068 9103 9.144298 CTTATATTTAGGAACAGAGGGAGTACA 57.856 37.037 0.00 0.00 0.00 2.90
6072 9107 3.858135 AGGAACAGAGGGAGTACAAAGA 58.142 45.455 0.00 0.00 0.00 2.52
6101 9136 2.159448 TGTGCAACTTGTGGAAGAAACG 60.159 45.455 0.00 0.00 38.04 3.60
6157 9196 6.711277 TGTTACATCTCTTGGCAAGAAGTAT 58.289 36.000 28.27 19.04 37.02 2.12
6179 9320 9.583765 AGTATAATCTTTACACTTTTCTCCGAC 57.416 33.333 0.00 0.00 0.00 4.79
6210 9416 7.284489 ACATCTCTTAGAGTCCATCAACTACTC 59.716 40.741 9.25 0.00 39.95 2.59
6212 9418 6.069323 TCTCTTAGAGTCCATCAACTACTCCT 60.069 42.308 9.25 0.00 40.42 3.69
6213 9419 5.888724 TCTTAGAGTCCATCAACTACTCCTG 59.111 44.000 0.00 0.00 40.42 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.363793 CCTCCCTCTTTTTCTCTTTGTTTTTCA 60.364 37.037 0.00 0.00 0.00 2.69
5 6 5.363868 CCCTCCCTCTTTTTCTCTTTGTTTT 59.636 40.000 0.00 0.00 0.00 2.43
7 8 4.168088 TCCCTCCCTCTTTTTCTCTTTGTT 59.832 41.667 0.00 0.00 0.00 2.83
8 9 3.722101 TCCCTCCCTCTTTTTCTCTTTGT 59.278 43.478 0.00 0.00 0.00 2.83
9 10 4.331108 CTCCCTCCCTCTTTTTCTCTTTG 58.669 47.826 0.00 0.00 0.00 2.77
10 11 3.332187 CCTCCCTCCCTCTTTTTCTCTTT 59.668 47.826 0.00 0.00 0.00 2.52
12 13 2.556766 CCTCCCTCCCTCTTTTTCTCT 58.443 52.381 0.00 0.00 0.00 3.10
13 14 1.562008 CCCTCCCTCCCTCTTTTTCTC 59.438 57.143 0.00 0.00 0.00 2.87
14 15 1.675007 CCCTCCCTCCCTCTTTTTCT 58.325 55.000 0.00 0.00 0.00 2.52
15 16 0.626382 CCCCTCCCTCCCTCTTTTTC 59.374 60.000 0.00 0.00 0.00 2.29
17 18 1.230314 CCCCCTCCCTCCCTCTTTT 60.230 63.158 0.00 0.00 0.00 2.27
18 19 2.461637 CCCCCTCCCTCCCTCTTT 59.538 66.667 0.00 0.00 0.00 2.52
19 20 4.439901 GCCCCCTCCCTCCCTCTT 62.440 72.222 0.00 0.00 0.00 2.85
21 22 4.760220 TTGCCCCCTCCCTCCCTC 62.760 72.222 0.00 0.00 0.00 4.30
22 23 3.848200 TTTTGCCCCCTCCCTCCCT 62.848 63.158 0.00 0.00 0.00 4.20
88 89 1.340017 CCACCTTCACCAATCCACGAT 60.340 52.381 0.00 0.00 0.00 3.73
89 90 0.036164 CCACCTTCACCAATCCACGA 59.964 55.000 0.00 0.00 0.00 4.35
91 92 1.073923 ACTCCACCTTCACCAATCCAC 59.926 52.381 0.00 0.00 0.00 4.02
92 93 1.073763 CACTCCACCTTCACCAATCCA 59.926 52.381 0.00 0.00 0.00 3.41
93 94 1.614317 CCACTCCACCTTCACCAATCC 60.614 57.143 0.00 0.00 0.00 3.01
94 95 1.351017 TCCACTCCACCTTCACCAATC 59.649 52.381 0.00 0.00 0.00 2.67
95 96 1.352352 CTCCACTCCACCTTCACCAAT 59.648 52.381 0.00 0.00 0.00 3.16
96 97 0.764890 CTCCACTCCACCTTCACCAA 59.235 55.000 0.00 0.00 0.00 3.67
344 378 1.188863 GGTTTACCGAGCCTACAGGA 58.811 55.000 0.00 0.00 37.39 3.86
388 422 3.059982 CTCAGGCGACAGGGACAA 58.940 61.111 0.00 0.00 0.00 3.18
428 468 3.706373 CCTGCCGGCCTGTACTGT 61.706 66.667 26.77 0.00 0.00 3.55
450 490 5.155278 TGACGGAAGGAAATTAACTAGCA 57.845 39.130 0.00 0.00 0.00 3.49
493 533 1.915983 GCCAGGGCCTAGTTAAGCT 59.084 57.895 5.28 0.00 34.56 3.74
507 547 1.604378 CTCAACTACCCAGGGCCAG 59.396 63.158 4.91 5.69 0.00 4.85
508 548 2.602676 GCTCAACTACCCAGGGCCA 61.603 63.158 4.91 0.00 0.00 5.36
514 554 1.892474 GCAATTTGGCTCAACTACCCA 59.108 47.619 0.00 0.00 0.00 4.51
653 713 2.032550 CGCACTAATCAGGCCAAATCTG 59.967 50.000 5.01 0.00 0.00 2.90
768 859 0.773644 AGGAGCATTGAGTGGTTGGT 59.226 50.000 0.00 0.00 39.00 3.67
813 904 0.972983 TGTCCTGCTCCTGCTCCTAC 60.973 60.000 0.00 0.00 40.48 3.18
814 905 0.685785 CTGTCCTGCTCCTGCTCCTA 60.686 60.000 0.00 0.00 40.48 2.94
815 906 1.988956 CTGTCCTGCTCCTGCTCCT 60.989 63.158 0.00 0.00 40.48 3.69
816 907 2.583520 CTGTCCTGCTCCTGCTCC 59.416 66.667 0.00 0.00 40.48 4.70
817 908 1.835927 AACCTGTCCTGCTCCTGCTC 61.836 60.000 0.00 0.00 40.48 4.26
818 909 1.835927 GAACCTGTCCTGCTCCTGCT 61.836 60.000 0.00 0.00 40.48 4.24
853 944 2.818130 GCTCAAACAATGGAGGCAAA 57.182 45.000 0.00 0.00 0.00 3.68
857 948 1.915141 ACAGGCTCAAACAATGGAGG 58.085 50.000 0.00 0.00 0.00 4.30
860 951 2.545106 GCAAAACAGGCTCAAACAATGG 59.455 45.455 0.00 0.00 0.00 3.16
862 953 3.540314 TGCAAAACAGGCTCAAACAAT 57.460 38.095 0.00 0.00 0.00 2.71
864 955 3.118847 TGAATGCAAAACAGGCTCAAACA 60.119 39.130 0.00 0.00 0.00 2.83
865 956 3.456280 TGAATGCAAAACAGGCTCAAAC 58.544 40.909 0.00 0.00 0.00 2.93
866 957 3.815856 TGAATGCAAAACAGGCTCAAA 57.184 38.095 0.00 0.00 0.00 2.69
867 958 3.069872 ACATGAATGCAAAACAGGCTCAA 59.930 39.130 0.00 0.00 0.00 3.02
869 960 2.991190 CACATGAATGCAAAACAGGCTC 59.009 45.455 0.00 0.00 0.00 4.70
871 962 1.461897 GCACATGAATGCAAAACAGGC 59.538 47.619 0.00 0.00 45.39 4.85
895 986 4.711846 AGGCCAAGAGAAAACAAAAGAACT 59.288 37.500 5.01 0.00 0.00 3.01
897 988 4.466015 ACAGGCCAAGAGAAAACAAAAGAA 59.534 37.500 5.01 0.00 0.00 2.52
900 991 3.513515 ACACAGGCCAAGAGAAAACAAAA 59.486 39.130 5.01 0.00 0.00 2.44
918 1009 6.491745 ACCATGACACCATTAATTACAACACA 59.508 34.615 0.00 0.00 0.00 3.72
920 1011 7.374272 CAACCATGACACCATTAATTACAACA 58.626 34.615 0.00 0.00 0.00 3.33
923 1014 5.478332 TGCAACCATGACACCATTAATTACA 59.522 36.000 0.00 0.00 0.00 2.41
924 1015 5.960113 TGCAACCATGACACCATTAATTAC 58.040 37.500 0.00 0.00 0.00 1.89
938 1033 2.019249 CCTACACCATCTGCAACCATG 58.981 52.381 0.00 0.00 0.00 3.66
979 1082 0.409876 TCACTACTCACCAGGGCTCT 59.590 55.000 0.00 0.00 0.00 4.09
982 1085 1.137872 CATCTCACTACTCACCAGGGC 59.862 57.143 0.00 0.00 0.00 5.19
983 1086 1.759445 CCATCTCACTACTCACCAGGG 59.241 57.143 0.00 0.00 0.00 4.45
984 1087 1.759445 CCCATCTCACTACTCACCAGG 59.241 57.143 0.00 0.00 0.00 4.45
985 1088 1.759445 CCCCATCTCACTACTCACCAG 59.241 57.143 0.00 0.00 0.00 4.00
986 1089 1.622449 CCCCCATCTCACTACTCACCA 60.622 57.143 0.00 0.00 0.00 4.17
987 1090 1.123928 CCCCCATCTCACTACTCACC 58.876 60.000 0.00 0.00 0.00 4.02
1008 1111 1.153168 CATCTCGTCGCCCCCAATT 60.153 57.895 0.00 0.00 0.00 2.32
1032 1135 1.699634 CCTCCGTCCACATTATCCCAT 59.300 52.381 0.00 0.00 0.00 4.00
1227 1330 1.975660 TGCACCAACCAAAGGAGTAC 58.024 50.000 0.00 0.00 0.00 2.73
1367 1472 3.995048 AGAGTTTCTAAAACGCTAGTGGC 59.005 43.478 8.42 0.00 37.64 5.01
1368 1473 6.154445 TGTAGAGTTTCTAAAACGCTAGTGG 58.846 40.000 13.84 0.00 34.16 4.00
1538 1647 1.867233 GTTGCTCGTGTCAGAACATGT 59.133 47.619 0.00 0.00 42.12 3.21
1551 1660 3.937706 AGAATCATTCTCCAAGTTGCTCG 59.062 43.478 0.00 0.00 34.07 5.03
1601 1712 4.664150 TTTCAGTTCCATGTGGGTTTTC 57.336 40.909 0.00 0.00 38.11 2.29
1607 1719 4.852134 TGAACATTTCAGTTCCATGTGG 57.148 40.909 4.58 0.00 45.62 4.17
1675 1787 8.609483 AGCTAATGTCCCAGTGATTATATGATT 58.391 33.333 0.00 0.00 0.00 2.57
1695 1807 5.817816 CCTATTGTGGAAGAAACGAGCTAAT 59.182 40.000 0.00 0.00 0.00 1.73
1736 1848 8.281194 CACATAATATCACATCTGAAAGTGAGC 58.719 37.037 17.39 0.00 46.70 4.26
1884 1996 5.636121 TGTCTACACTTAACAGTTAATGCCG 59.364 40.000 6.20 0.00 0.00 5.69
1930 2042 3.430895 GTCCGTCGCTTTGATCTAAACAA 59.569 43.478 0.00 0.00 0.00 2.83
1937 2049 0.992802 GTGAGTCCGTCGCTTTGATC 59.007 55.000 0.00 0.00 32.41 2.92
1951 2063 7.864379 CAGACAAAAGCAAATTATTCAGTGAGT 59.136 33.333 0.00 0.00 0.00 3.41
2152 2264 0.096628 GCTGCAGAAGATGTTGAGCG 59.903 55.000 20.43 0.00 0.00 5.03
2165 2279 3.368190 CTCTCTCCCCGTGCTGCAG 62.368 68.421 10.11 10.11 0.00 4.41
2175 2289 2.783135 TCAACACAAATGCTCTCTCCC 58.217 47.619 0.00 0.00 0.00 4.30
2338 2454 7.712639 AGAATACACAGTATCAAGCCATTAGTG 59.287 37.037 0.00 0.00 0.00 2.74
2358 2476 7.362802 ACATAAGTCCCCTTCTGTAGAATAC 57.637 40.000 0.00 0.00 36.55 1.89
2425 2543 6.861065 TCACACACAGAAATAAGTTCCTTC 57.139 37.500 0.00 0.00 36.86 3.46
2471 2589 6.439675 TCGCCACTTATAAATTGGTAAACC 57.560 37.500 12.36 0.00 33.99 3.27
2511 2635 4.727734 GCTGGTACAAGCACATATCAAACG 60.728 45.833 17.77 0.00 38.70 3.60
2578 2702 5.626543 CCAATTTAAGGATTTGATGCGATCG 59.373 40.000 11.69 11.69 0.00 3.69
2823 2984 5.964758 ACAAAAGATGCTGTCACTTTTTCA 58.035 33.333 0.00 0.00 40.36 2.69
2861 3023 4.161189 TCACTTCCTGCCAAATCAACAAAA 59.839 37.500 0.00 0.00 0.00 2.44
3015 3177 6.830838 AGAGAAACTTTCCACTGAAACTCAAT 59.169 34.615 0.00 0.00 35.58 2.57
3026 3188 7.759886 ACTTTTTAAGCAAGAGAAACTTTCCAC 59.240 33.333 0.00 0.00 36.61 4.02
3067 3246 5.199024 TGCTGCATACATGAAAACAAGTT 57.801 34.783 0.00 0.00 0.00 2.66
3079 3258 4.398988 CCATTTCTTACCTTGCTGCATACA 59.601 41.667 1.84 0.00 0.00 2.29
3080 3259 4.640201 TCCATTTCTTACCTTGCTGCATAC 59.360 41.667 1.84 0.00 0.00 2.39
3382 3561 6.183360 TGTGGTTATCTTTTTCCTTCACCAAC 60.183 38.462 0.00 0.00 34.87 3.77
3468 3647 7.230510 TGTGGTTAAAACTATGCATCTGTTTCT 59.769 33.333 22.56 16.94 33.45 2.52
3478 3657 4.156182 GCGACTTGTGGTTAAAACTATGC 58.844 43.478 0.00 0.00 0.00 3.14
3490 3678 1.071605 GTAAGCTCTGCGACTTGTGG 58.928 55.000 0.00 0.00 0.00 4.17
3532 3720 5.670485 ACATGTTCGTCCTTTCTATATGCA 58.330 37.500 0.00 0.00 0.00 3.96
3533 3721 6.700081 TGTACATGTTCGTCCTTTCTATATGC 59.300 38.462 2.30 0.00 0.00 3.14
3595 3783 5.741673 GCACATGTTCCCAAGTGGTATTTTT 60.742 40.000 0.00 0.00 39.93 1.94
3596 3784 4.262420 GCACATGTTCCCAAGTGGTATTTT 60.262 41.667 0.00 0.00 39.93 1.82
3597 3785 3.258123 GCACATGTTCCCAAGTGGTATTT 59.742 43.478 0.00 0.00 39.93 1.40
3598 3786 2.825532 GCACATGTTCCCAAGTGGTATT 59.174 45.455 0.00 0.00 39.93 1.89
3599 3787 2.041620 AGCACATGTTCCCAAGTGGTAT 59.958 45.455 0.00 0.00 45.86 2.73
3601 3789 0.185901 AGCACATGTTCCCAAGTGGT 59.814 50.000 0.00 0.00 43.76 4.16
3631 3819 4.095036 GTGGCTAACTGAGTAATTCAAGGC 59.905 45.833 0.00 0.00 37.29 4.35
3686 3894 7.947890 AGGAAGGTGTATTTGGACATTTTAAGA 59.052 33.333 0.00 0.00 0.00 2.10
3743 3952 3.679389 TCTTTCTCCATCTGCAAGGAAC 58.321 45.455 4.06 0.00 32.57 3.62
3837 4046 2.393764 GGACGCTTTGAAACATGGTTG 58.606 47.619 0.00 0.00 0.00 3.77
3907 4176 1.594293 AGTGGTTCTGACGCAACCG 60.594 57.895 0.00 0.00 45.66 4.44
3918 4187 6.205658 AGAGAAAGCATAAACTTCAGTGGTTC 59.794 38.462 0.00 0.00 31.80 3.62
3924 4193 7.329717 ACGTAAGAGAGAAAGCATAAACTTCAG 59.670 37.037 0.00 0.00 43.62 3.02
3926 4195 7.583860 ACGTAAGAGAGAAAGCATAAACTTC 57.416 36.000 0.00 0.00 43.62 3.01
3933 4202 6.208988 TCATGTACGTAAGAGAGAAAGCAT 57.791 37.500 0.00 0.00 43.62 3.79
3948 4217 1.207089 TCCCAGAAGCCTTCATGTACG 59.793 52.381 7.29 0.00 0.00 3.67
3956 4225 1.450360 AAGTTCCTCCCAGAAGCCTT 58.550 50.000 0.00 0.00 0.00 4.35
4008 4277 5.309323 TGATGATTCGGTTGTTGATTTCC 57.691 39.130 0.00 0.00 0.00 3.13
4011 4280 5.882000 TCTGATGATGATTCGGTTGTTGATT 59.118 36.000 0.00 0.00 0.00 2.57
4024 4293 8.045507 ACATTGTCAACTACTTCTGATGATGAT 58.954 33.333 0.00 0.00 0.00 2.45
4025 4294 7.389232 ACATTGTCAACTACTTCTGATGATGA 58.611 34.615 0.00 0.00 0.00 2.92
4026 4295 7.201591 GGACATTGTCAACTACTTCTGATGATG 60.202 40.741 18.09 0.00 33.68 3.07
4135 4404 5.164620 TGCTGACTGAATAACTCAATGGA 57.835 39.130 0.00 0.00 32.17 3.41
4199 4468 7.331026 TCCTCATTTGATATCTGAGAAACGTT 58.669 34.615 17.71 0.00 38.96 3.99
4363 4632 5.828328 AGTAGATACATCATCACGTCTGGAA 59.172 40.000 0.00 0.00 35.96 3.53
4366 4635 6.066054 ACAGTAGATACATCATCACGTCTG 57.934 41.667 0.00 0.00 35.96 3.51
4371 4640 7.148641 CAGGGTAACAGTAGATACATCATCAC 58.851 42.308 0.00 0.00 35.16 3.06
4372 4641 6.267699 CCAGGGTAACAGTAGATACATCATCA 59.732 42.308 0.00 0.00 35.16 3.07
4374 4643 6.382087 TCCAGGGTAACAGTAGATACATCAT 58.618 40.000 0.00 0.00 39.74 2.45
4402 4671 4.867608 GGTTTTCTGACAGTCTCTAGATGC 59.132 45.833 1.59 0.00 0.00 3.91
4444 4713 5.914898 TTCGTGTTGAAGATCCTAGATCA 57.085 39.130 7.30 0.00 31.44 2.92
4453 4722 4.021102 AGATGGGTTTCGTGTTGAAGAT 57.979 40.909 0.00 0.00 37.99 2.40
4507 4776 1.686052 GTAGAGCCCATCAGAGACCTG 59.314 57.143 0.00 0.00 41.74 4.00
4567 4836 4.268359 GGAAGTCCATGAATCTTCTGCTT 58.732 43.478 17.26 0.00 38.02 3.91
4651 4920 1.966451 CCCTGCCCGTGACAAAGTC 60.966 63.158 0.00 0.00 0.00 3.01
4738 5007 6.715347 AATTCACCTATGCCAGTAAATTCC 57.285 37.500 0.00 0.00 0.00 3.01
4747 5016 1.824230 GCCACAAATTCACCTATGCCA 59.176 47.619 0.00 0.00 0.00 4.92
4765 5034 2.560105 AGCCATTTCTTTCAGTTCAGCC 59.440 45.455 0.00 0.00 0.00 4.85
4832 5101 9.261180 GCTGTGCTGATAGACTAATAATAACAA 57.739 33.333 0.00 0.00 0.00 2.83
4844 5122 2.353889 CCAATGTGCTGTGCTGATAGAC 59.646 50.000 0.00 0.00 0.00 2.59
4925 5203 3.369471 CGGTTCCTTCTGCTATTTCTCCA 60.369 47.826 0.00 0.00 0.00 3.86
5015 5293 4.240888 TGATCTCTTGCTGTTTTCTCTCG 58.759 43.478 0.00 0.00 0.00 4.04
5251 7664 6.019479 CCGTAATACAGAGAAGTGAGAAATGC 60.019 42.308 0.00 0.00 0.00 3.56
5269 7682 3.635373 AGAGGAATTCGAGTGCCGTAATA 59.365 43.478 0.00 0.00 39.75 0.98
5306 7720 2.573462 ACTTCCTGGCACTACATGTCAT 59.427 45.455 0.00 0.00 43.62 3.06
5607 8021 0.969894 ACGGCCATATCTCCAGCTAC 59.030 55.000 2.24 0.00 0.00 3.58
5661 8075 1.001706 GGAACAACGAAAACCTCCTGC 60.002 52.381 0.00 0.00 0.00 4.85
5734 8177 3.826729 AGAAAACACAATGAAGGGCCTAC 59.173 43.478 6.41 0.00 0.00 3.18
5809 8252 3.704061 AGTAGACAGAGCTTCCCAATCTC 59.296 47.826 0.00 0.00 0.00 2.75
5810 8253 3.450457 CAGTAGACAGAGCTTCCCAATCT 59.550 47.826 0.00 0.00 0.00 2.40
5900 8935 5.848833 TTTAGAAACGGAGGGAGTATCTC 57.151 43.478 0.00 0.00 33.92 2.75
5906 8941 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
5908 8943 8.827677 CAAAGACTTATATTTAGAAACGGAGGG 58.172 37.037 0.00 0.00 0.00 4.30
5927 8962 9.646427 GTTCATAGTGAAATCTCTACAAAGACT 57.354 33.333 0.00 0.00 38.22 3.24
5928 8963 8.874816 GGTTCATAGTGAAATCTCTACAAAGAC 58.125 37.037 0.00 0.00 38.22 3.01
5929 8964 8.593679 TGGTTCATAGTGAAATCTCTACAAAGA 58.406 33.333 0.00 0.00 38.22 2.52
5930 8965 8.660373 GTGGTTCATAGTGAAATCTCTACAAAG 58.340 37.037 0.00 0.00 38.22 2.77
5931 8966 8.154203 TGTGGTTCATAGTGAAATCTCTACAAA 58.846 33.333 0.00 0.00 38.22 2.83
5932 8967 7.676004 TGTGGTTCATAGTGAAATCTCTACAA 58.324 34.615 0.00 0.00 38.22 2.41
5933 8968 7.239763 TGTGGTTCATAGTGAAATCTCTACA 57.760 36.000 0.00 0.00 38.22 2.74
5934 8969 9.250624 GTATGTGGTTCATAGTGAAATCTCTAC 57.749 37.037 0.00 0.00 38.22 2.59
5935 8970 8.135529 CGTATGTGGTTCATAGTGAAATCTCTA 58.864 37.037 0.00 0.00 38.22 2.43
5936 8971 6.980978 CGTATGTGGTTCATAGTGAAATCTCT 59.019 38.462 0.00 0.00 38.22 3.10
5937 8972 6.201044 CCGTATGTGGTTCATAGTGAAATCTC 59.799 42.308 0.00 0.00 38.22 2.75
5938 8973 6.049149 CCGTATGTGGTTCATAGTGAAATCT 58.951 40.000 0.00 0.00 38.22 2.40
5939 8974 6.046593 TCCGTATGTGGTTCATAGTGAAATC 58.953 40.000 0.00 0.00 38.22 2.17
5940 8975 5.984725 TCCGTATGTGGTTCATAGTGAAAT 58.015 37.500 0.00 0.00 38.22 2.17
5941 8976 5.408880 TCCGTATGTGGTTCATAGTGAAA 57.591 39.130 0.00 0.00 38.22 2.69
5942 8977 5.105106 ACATCCGTATGTGGTTCATAGTGAA 60.105 40.000 0.00 0.00 44.79 3.18
5943 8978 4.404394 ACATCCGTATGTGGTTCATAGTGA 59.596 41.667 0.00 0.00 44.79 3.41
5944 8979 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
5945 8980 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
5946 8981 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
5947 8982 8.909923 CCTATATACATCCGTATGTGGTTCATA 58.090 37.037 3.56 0.00 45.99 2.15
5948 8983 7.399191 ACCTATATACATCCGTATGTGGTTCAT 59.601 37.037 3.56 0.00 45.99 2.57
5949 8984 6.722590 ACCTATATACATCCGTATGTGGTTCA 59.277 38.462 3.56 0.00 45.99 3.18
5950 8985 7.033791 CACCTATATACATCCGTATGTGGTTC 58.966 42.308 3.56 0.00 45.99 3.62
5951 8986 6.573680 GCACCTATATACATCCGTATGTGGTT 60.574 42.308 3.56 0.00 45.99 3.67
5952 8987 5.105473 GCACCTATATACATCCGTATGTGGT 60.105 44.000 3.56 0.00 45.99 4.16
5953 8988 5.105513 TGCACCTATATACATCCGTATGTGG 60.106 44.000 3.56 0.00 45.99 4.17
5954 8989 5.961272 TGCACCTATATACATCCGTATGTG 58.039 41.667 3.56 0.00 45.99 3.21
5956 8991 8.492673 AAAATGCACCTATATACATCCGTATG 57.507 34.615 0.00 0.00 38.79 2.39
5958 8993 9.647797 CTTAAAATGCACCTATATACATCCGTA 57.352 33.333 0.00 0.00 0.00 4.02
5959 8994 8.154856 ACTTAAAATGCACCTATATACATCCGT 58.845 33.333 0.00 0.00 0.00 4.69
5960 8995 8.547967 ACTTAAAATGCACCTATATACATCCG 57.452 34.615 0.00 0.00 0.00 4.18
5971 9006 9.860898 GATTGAATCTAAACTTAAAATGCACCT 57.139 29.630 0.00 0.00 0.00 4.00
5972 9007 9.638239 TGATTGAATCTAAACTTAAAATGCACC 57.362 29.630 6.73 0.00 0.00 5.01
5982 9017 9.132521 CGAAGCAAAATGATTGAATCTAAACTT 57.867 29.630 6.73 3.21 0.00 2.66
5983 9018 8.299570 ACGAAGCAAAATGATTGAATCTAAACT 58.700 29.630 6.73 0.00 0.00 2.66
5984 9019 8.452989 ACGAAGCAAAATGATTGAATCTAAAC 57.547 30.769 6.73 0.00 0.00 2.01
5986 9021 9.720667 CATACGAAGCAAAATGATTGAATCTAA 57.279 29.630 6.73 0.00 0.00 2.10
5987 9022 8.892723 ACATACGAAGCAAAATGATTGAATCTA 58.107 29.630 6.73 0.00 0.00 1.98
5988 9023 7.765307 ACATACGAAGCAAAATGATTGAATCT 58.235 30.769 6.73 0.00 0.00 2.40
5989 9024 7.975866 ACATACGAAGCAAAATGATTGAATC 57.024 32.000 0.00 0.00 0.00 2.52
5990 9025 8.677300 ACTACATACGAAGCAAAATGATTGAAT 58.323 29.630 0.00 0.00 0.00 2.57
5991 9026 8.039603 ACTACATACGAAGCAAAATGATTGAA 57.960 30.769 0.00 0.00 0.00 2.69
5992 9027 7.549134 AGACTACATACGAAGCAAAATGATTGA 59.451 33.333 0.00 0.00 0.00 2.57
5993 9028 7.688372 AGACTACATACGAAGCAAAATGATTG 58.312 34.615 0.00 0.00 0.00 2.67
5994 9029 7.849804 AGACTACATACGAAGCAAAATGATT 57.150 32.000 0.00 0.00 0.00 2.57
5995 9030 9.197694 GATAGACTACATACGAAGCAAAATGAT 57.802 33.333 0.00 0.00 0.00 2.45
5996 9031 8.414003 AGATAGACTACATACGAAGCAAAATGA 58.586 33.333 0.00 0.00 0.00 2.57
5997 9032 8.483218 CAGATAGACTACATACGAAGCAAAATG 58.517 37.037 0.00 0.00 0.00 2.32
5998 9033 7.653713 CCAGATAGACTACATACGAAGCAAAAT 59.346 37.037 0.00 0.00 0.00 1.82
5999 9034 6.978659 CCAGATAGACTACATACGAAGCAAAA 59.021 38.462 0.00 0.00 0.00 2.44
6000 9035 6.096423 ACCAGATAGACTACATACGAAGCAAA 59.904 38.462 0.00 0.00 0.00 3.68
6001 9036 5.593095 ACCAGATAGACTACATACGAAGCAA 59.407 40.000 0.00 0.00 0.00 3.91
6002 9037 5.008712 CACCAGATAGACTACATACGAAGCA 59.991 44.000 0.00 0.00 0.00 3.91
6003 9038 5.238868 TCACCAGATAGACTACATACGAAGC 59.761 44.000 0.00 0.00 0.00 3.86
6004 9039 6.862711 TCACCAGATAGACTACATACGAAG 57.137 41.667 0.00 0.00 0.00 3.79
6005 9040 7.634671 TTTCACCAGATAGACTACATACGAA 57.365 36.000 0.00 0.00 0.00 3.85
6006 9041 7.720074 AGATTTCACCAGATAGACTACATACGA 59.280 37.037 0.00 0.00 0.00 3.43
6007 9042 7.877003 AGATTTCACCAGATAGACTACATACG 58.123 38.462 0.00 0.00 0.00 3.06
6008 9043 9.073475 AGAGATTTCACCAGATAGACTACATAC 57.927 37.037 0.00 0.00 0.00 2.39
6010 9045 9.073475 GTAGAGATTTCACCAGATAGACTACAT 57.927 37.037 0.00 0.00 0.00 2.29
6011 9046 8.053355 TGTAGAGATTTCACCAGATAGACTACA 58.947 37.037 0.00 0.00 34.91 2.74
6012 9047 8.453238 TGTAGAGATTTCACCAGATAGACTAC 57.547 38.462 0.00 0.00 0.00 2.73
6013 9048 9.475620 TTTGTAGAGATTTCACCAGATAGACTA 57.524 33.333 0.00 0.00 0.00 2.59
6014 9049 7.962995 TTGTAGAGATTTCACCAGATAGACT 57.037 36.000 0.00 0.00 0.00 3.24
6015 9050 8.470805 TCTTTGTAGAGATTTCACCAGATAGAC 58.529 37.037 0.00 0.00 0.00 2.59
6016 9051 8.470805 GTCTTTGTAGAGATTTCACCAGATAGA 58.529 37.037 0.00 0.00 0.00 1.98
6017 9052 8.474025 AGTCTTTGTAGAGATTTCACCAGATAG 58.526 37.037 0.00 0.00 0.00 2.08
6018 9053 8.367660 AGTCTTTGTAGAGATTTCACCAGATA 57.632 34.615 0.00 0.00 0.00 1.98
6019 9054 7.251321 AGTCTTTGTAGAGATTTCACCAGAT 57.749 36.000 0.00 0.00 0.00 2.90
6020 9055 6.672266 AGTCTTTGTAGAGATTTCACCAGA 57.328 37.500 0.00 0.00 0.00 3.86
6035 9070 9.892130 CCTCTGTTCCTAAATATAAGTCTTTGT 57.108 33.333 0.00 0.00 0.00 2.83
6036 9071 9.331282 CCCTCTGTTCCTAAATATAAGTCTTTG 57.669 37.037 0.00 0.00 0.00 2.77
6037 9072 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
6038 9073 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
6039 9074 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
6040 9075 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
6041 9076 9.145442 GTACTCCCTCTGTTCCTAAATATAAGT 57.855 37.037 0.00 0.00 0.00 2.24
6042 9077 9.144298 TGTACTCCCTCTGTTCCTAAATATAAG 57.856 37.037 0.00 0.00 0.00 1.73
6043 9078 9.496710 TTGTACTCCCTCTGTTCCTAAATATAA 57.503 33.333 0.00 0.00 0.00 0.98
6044 9079 9.496710 TTTGTACTCCCTCTGTTCCTAAATATA 57.503 33.333 0.00 0.00 0.00 0.86
6045 9080 7.989947 TTGTACTCCCTCTGTTCCTAAATAT 57.010 36.000 0.00 0.00 0.00 1.28
6046 9081 7.676893 TCTTTGTACTCCCTCTGTTCCTAAATA 59.323 37.037 0.00 0.00 0.00 1.40
6047 9082 6.500751 TCTTTGTACTCCCTCTGTTCCTAAAT 59.499 38.462 0.00 0.00 0.00 1.40
6048 9083 5.842328 TCTTTGTACTCCCTCTGTTCCTAAA 59.158 40.000 0.00 0.00 0.00 1.85
6049 9084 5.399991 TCTTTGTACTCCCTCTGTTCCTAA 58.600 41.667 0.00 0.00 0.00 2.69
6050 9085 5.006896 TCTTTGTACTCCCTCTGTTCCTA 57.993 43.478 0.00 0.00 0.00 2.94
6051 9086 3.858135 TCTTTGTACTCCCTCTGTTCCT 58.142 45.455 0.00 0.00 0.00 3.36
6052 9087 4.828072 ATCTTTGTACTCCCTCTGTTCC 57.172 45.455 0.00 0.00 0.00 3.62
6053 9088 7.331791 ACATAATCTTTGTACTCCCTCTGTTC 58.668 38.462 0.00 0.00 0.00 3.18
6054 9089 7.259088 ACATAATCTTTGTACTCCCTCTGTT 57.741 36.000 0.00 0.00 0.00 3.16
6055 9090 6.875972 ACATAATCTTTGTACTCCCTCTGT 57.124 37.500 0.00 0.00 0.00 3.41
6056 9091 8.424918 ACATACATAATCTTTGTACTCCCTCTG 58.575 37.037 0.00 0.00 32.70 3.35
6057 9092 8.424918 CACATACATAATCTTTGTACTCCCTCT 58.575 37.037 0.00 0.00 32.70 3.69
6058 9093 7.171678 GCACATACATAATCTTTGTACTCCCTC 59.828 40.741 0.00 0.00 32.70 4.30
6059 9094 6.992715 GCACATACATAATCTTTGTACTCCCT 59.007 38.462 0.00 0.00 32.70 4.20
6060 9095 6.765989 TGCACATACATAATCTTTGTACTCCC 59.234 38.462 0.00 0.00 32.70 4.30
6061 9096 7.786178 TGCACATACATAATCTTTGTACTCC 57.214 36.000 0.00 0.00 32.70 3.85
6062 9097 8.883731 AGTTGCACATACATAATCTTTGTACTC 58.116 33.333 0.00 0.00 32.70 2.59
6063 9098 8.792830 AGTTGCACATACATAATCTTTGTACT 57.207 30.769 0.00 0.00 32.70 2.73
6064 9099 9.277565 CAAGTTGCACATACATAATCTTTGTAC 57.722 33.333 0.00 0.00 32.70 2.90
6065 9100 9.008965 ACAAGTTGCACATACATAATCTTTGTA 57.991 29.630 1.81 0.00 34.29 2.41
6066 9101 7.809331 CACAAGTTGCACATACATAATCTTTGT 59.191 33.333 1.81 0.00 0.00 2.83
6067 9102 7.274033 CCACAAGTTGCACATACATAATCTTTG 59.726 37.037 1.81 0.00 0.00 2.77
6068 9103 7.176515 TCCACAAGTTGCACATACATAATCTTT 59.823 33.333 1.81 0.00 0.00 2.52
6072 9107 6.658816 TCTTCCACAAGTTGCACATACATAAT 59.341 34.615 1.81 0.00 0.00 1.28
6101 9136 8.443953 AAAGATAGATAGCAATCCAGTTGAAC 57.556 34.615 0.00 0.00 40.37 3.18
6140 9179 9.601217 GTAAAGATTATACTTCTTGCCAAGAGA 57.399 33.333 7.29 0.00 39.03 3.10
6145 9184 9.515226 AAAGTGTAAAGATTATACTTCTTGCCA 57.485 29.630 11.13 0.00 33.79 4.92
6157 9196 6.761312 TGGTCGGAGAAAAGTGTAAAGATTA 58.239 36.000 0.00 0.00 39.69 1.75
6176 9317 5.299531 TGGACTCTAAGAGATGTATTGGTCG 59.700 44.000 0.00 0.00 33.32 4.79
6179 9320 7.295322 TGATGGACTCTAAGAGATGTATTGG 57.705 40.000 0.00 0.00 33.32 3.16
6210 9416 2.496817 GCAGTAGCCCTCGACAGG 59.503 66.667 0.00 0.00 39.98 4.00
6509 12559 3.891586 GACGACGACGCAGAAGCCA 62.892 63.158 7.30 0.00 43.96 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.