Multiple sequence alignment - TraesCS2B01G405100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G405100 | chr2B | 100.000 | 2572 | 0 | 0 | 1 | 2572 | 573197104 | 573199675 | 0.000000e+00 | 4750.0 |
1 | TraesCS2B01G405100 | chr2B | 91.307 | 1461 | 80 | 25 | 32 | 1474 | 573185656 | 573187087 | 0.000000e+00 | 1951.0 |
2 | TraesCS2B01G405100 | chr2B | 91.163 | 894 | 50 | 13 | 591 | 1474 | 573183457 | 573184331 | 0.000000e+00 | 1186.0 |
3 | TraesCS2B01G405100 | chr2B | 91.883 | 308 | 15 | 5 | 1784 | 2086 | 573187337 | 573187639 | 3.060000e-114 | 422.0 |
4 | TraesCS2B01G405100 | chr2B | 91.608 | 286 | 19 | 4 | 890 | 1173 | 573182279 | 573182561 | 8.630000e-105 | 390.0 |
5 | TraesCS2B01G405100 | chr2B | 95.152 | 165 | 8 | 0 | 1622 | 1786 | 756177183 | 756177019 | 7.060000e-66 | 261.0 |
6 | TraesCS2B01G405100 | chr2B | 93.976 | 166 | 10 | 0 | 1621 | 1786 | 479990257 | 479990092 | 4.250000e-63 | 252.0 |
7 | TraesCS2B01G405100 | chr2B | 93.976 | 166 | 10 | 0 | 1620 | 1785 | 711137151 | 711136986 | 4.250000e-63 | 252.0 |
8 | TraesCS2B01G405100 | chr2B | 89.922 | 129 | 13 | 0 | 2309 | 2437 | 573187643 | 573187771 | 1.580000e-37 | 167.0 |
9 | TraesCS2B01G405100 | chr2B | 88.889 | 117 | 9 | 3 | 2453 | 2569 | 573189922 | 573190034 | 9.590000e-30 | 141.0 |
10 | TraesCS2B01G405100 | chr2B | 75.799 | 219 | 38 | 12 | 405 | 613 | 52862369 | 52862582 | 2.110000e-16 | 97.1 |
11 | TraesCS2B01G405100 | chr2B | 86.747 | 83 | 6 | 5 | 53 | 131 | 186379308 | 186379389 | 1.270000e-13 | 87.9 |
12 | TraesCS2B01G405100 | chr2A | 92.766 | 788 | 36 | 7 | 1784 | 2569 | 633223614 | 633224382 | 0.000000e+00 | 1120.0 |
13 | TraesCS2B01G405100 | chr2A | 93.625 | 753 | 32 | 4 | 1822 | 2572 | 633229236 | 633229974 | 0.000000e+00 | 1110.0 |
14 | TraesCS2B01G405100 | chr2A | 91.015 | 601 | 34 | 9 | 881 | 1474 | 633222777 | 633223364 | 0.000000e+00 | 793.0 |
15 | TraesCS2B01G405100 | chr2A | 84.428 | 822 | 89 | 27 | 1 | 805 | 633227683 | 633228482 | 0.000000e+00 | 773.0 |
16 | TraesCS2B01G405100 | chr2A | 95.484 | 310 | 14 | 0 | 1165 | 1474 | 633228727 | 633229036 | 1.780000e-136 | 496.0 |
17 | TraesCS2B01G405100 | chr2A | 89.756 | 205 | 15 | 4 | 872 | 1075 | 633228502 | 633228701 | 9.130000e-65 | 257.0 |
18 | TraesCS2B01G405100 | chr2A | 90.714 | 140 | 12 | 1 | 1481 | 1620 | 633229072 | 633229210 | 4.370000e-43 | 185.0 |
19 | TraesCS2B01G405100 | chr2D | 89.314 | 758 | 57 | 14 | 737 | 1474 | 489637190 | 489637943 | 0.000000e+00 | 929.0 |
20 | TraesCS2B01G405100 | chr2D | 94.595 | 555 | 19 | 4 | 2019 | 2572 | 489638374 | 489638918 | 0.000000e+00 | 848.0 |
21 | TraesCS2B01G405100 | chr2D | 91.987 | 599 | 37 | 8 | 881 | 1474 | 489593362 | 489593954 | 0.000000e+00 | 830.0 |
22 | TraesCS2B01G405100 | chr2D | 87.482 | 703 | 38 | 19 | 1869 | 2569 | 489594882 | 489595536 | 0.000000e+00 | 765.0 |
23 | TraesCS2B01G405100 | chr2D | 91.081 | 370 | 20 | 2 | 1105 | 1474 | 489574390 | 489574746 | 2.970000e-134 | 488.0 |
24 | TraesCS2B01G405100 | chr2D | 91.961 | 311 | 13 | 5 | 1784 | 2090 | 489574936 | 489575238 | 2.370000e-115 | 425.0 |
25 | TraesCS2B01G405100 | chr2D | 86.810 | 326 | 30 | 3 | 325 | 648 | 489636508 | 489636822 | 4.070000e-93 | 351.0 |
26 | TraesCS2B01G405100 | chr2D | 84.810 | 237 | 18 | 4 | 2337 | 2572 | 489590629 | 489590848 | 3.330000e-54 | 222.0 |
27 | TraesCS2B01G405100 | chr2D | 87.766 | 188 | 15 | 6 | 890 | 1075 | 489574230 | 489574411 | 2.000000e-51 | 213.0 |
28 | TraesCS2B01G405100 | chr2D | 96.471 | 85 | 0 | 2 | 1784 | 1866 | 489594217 | 489594300 | 1.240000e-28 | 137.0 |
29 | TraesCS2B01G405100 | chr2D | 77.727 | 220 | 39 | 8 | 407 | 617 | 25179106 | 25178888 | 2.690000e-25 | 126.0 |
30 | TraesCS2B01G405100 | chr2D | 86.747 | 83 | 6 | 5 | 53 | 131 | 131648338 | 131648257 | 1.270000e-13 | 87.9 |
31 | TraesCS2B01G405100 | chr2D | 81.651 | 109 | 12 | 6 | 20 | 124 | 37220029 | 37219925 | 1.640000e-12 | 84.2 |
32 | TraesCS2B01G405100 | chr1D | 95.122 | 164 | 8 | 0 | 1623 | 1786 | 311986774 | 311986611 | 2.540000e-65 | 259.0 |
33 | TraesCS2B01G405100 | chr1D | 94.578 | 166 | 9 | 0 | 1621 | 1786 | 450202217 | 450202052 | 9.130000e-65 | 257.0 |
34 | TraesCS2B01G405100 | chr7D | 94.545 | 165 | 9 | 0 | 1621 | 1785 | 235502570 | 235502406 | 3.280000e-64 | 255.0 |
35 | TraesCS2B01G405100 | chr3D | 92.486 | 173 | 12 | 1 | 1617 | 1788 | 569577335 | 569577163 | 1.980000e-61 | 246.0 |
36 | TraesCS2B01G405100 | chr3B | 91.620 | 179 | 12 | 2 | 1608 | 1785 | 684066034 | 684066210 | 7.110000e-61 | 244.0 |
37 | TraesCS2B01G405100 | chr3B | 90.164 | 183 | 18 | 0 | 1620 | 1802 | 812681179 | 812680997 | 3.310000e-59 | 239.0 |
38 | TraesCS2B01G405100 | chr3B | 76.824 | 233 | 35 | 12 | 404 | 631 | 140396270 | 140396488 | 2.090000e-21 | 113.0 |
39 | TraesCS2B01G405100 | chr3B | 79.091 | 110 | 20 | 3 | 38 | 145 | 717661657 | 717661549 | 3.550000e-09 | 73.1 |
40 | TraesCS2B01G405100 | chr4A | 81.865 | 193 | 24 | 9 | 442 | 631 | 2263707 | 2263891 | 4.430000e-33 | 152.0 |
41 | TraesCS2B01G405100 | chr4A | 80.114 | 176 | 27 | 8 | 448 | 620 | 2265531 | 2265701 | 9.660000e-25 | 124.0 |
42 | TraesCS2B01G405100 | chr5B | 80.500 | 200 | 28 | 10 | 416 | 612 | 423233752 | 423233561 | 2.670000e-30 | 143.0 |
43 | TraesCS2B01G405100 | chr5B | 78.151 | 119 | 19 | 6 | 20 | 135 | 681074020 | 681073906 | 4.590000e-08 | 69.4 |
44 | TraesCS2B01G405100 | chr4B | 85.000 | 120 | 14 | 4 | 405 | 522 | 68982606 | 68982489 | 4.500000e-23 | 119.0 |
45 | TraesCS2B01G405100 | chr6B | 91.667 | 72 | 5 | 1 | 59 | 129 | 617343571 | 617343642 | 5.860000e-17 | 99.0 |
46 | TraesCS2B01G405100 | chr6B | 80.153 | 131 | 20 | 6 | 18 | 145 | 205043179 | 205043306 | 2.720000e-15 | 93.5 |
47 | TraesCS2B01G405100 | chr3A | 86.250 | 80 | 7 | 4 | 55 | 132 | 36131691 | 36131768 | 1.640000e-12 | 84.2 |
48 | TraesCS2B01G405100 | chr6D | 91.228 | 57 | 4 | 1 | 775 | 830 | 25789468 | 25789412 | 2.740000e-10 | 76.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G405100 | chr2B | 573197104 | 573199675 | 2571 | False | 4750.000000 | 4750 | 100.000000 | 1 | 2572 | 1 | chr2B.!!$F3 | 2571 |
1 | TraesCS2B01G405100 | chr2B | 573182279 | 573190034 | 7755 | False | 709.500000 | 1951 | 90.795333 | 32 | 2569 | 6 | chr2B.!!$F4 | 2537 |
2 | TraesCS2B01G405100 | chr2A | 633222777 | 633229974 | 7197 | False | 676.285714 | 1120 | 91.112571 | 1 | 2572 | 7 | chr2A.!!$F1 | 2571 |
3 | TraesCS2B01G405100 | chr2D | 489636508 | 489638918 | 2410 | False | 709.333333 | 929 | 90.239667 | 325 | 2572 | 3 | chr2D.!!$F3 | 2247 |
4 | TraesCS2B01G405100 | chr2D | 489590629 | 489595536 | 4907 | False | 488.500000 | 830 | 90.187500 | 881 | 2572 | 4 | chr2D.!!$F2 | 1691 |
5 | TraesCS2B01G405100 | chr2D | 489574230 | 489575238 | 1008 | False | 375.333333 | 488 | 90.269333 | 890 | 2090 | 3 | chr2D.!!$F1 | 1200 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
950 | 7877 | 1.219664 | CCGCCAAGAACCGATACCA | 59.78 | 57.895 | 0.0 | 0.0 | 0.0 | 3.25 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2397 | 10221 | 1.471119 | TACGGCACTCGAATTCCTCT | 58.529 | 50.0 | 0.0 | 0.0 | 42.43 | 3.69 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
216 | 6661 | 7.763985 | AGGCAAAACACCTTTTTATATACATGC | 59.236 | 33.333 | 0.00 | 0.00 | 31.87 | 4.06 |
343 | 6796 | 7.383029 | ACGTTTAGCCTTTTTAAAATACTTGGC | 59.617 | 33.333 | 8.89 | 8.89 | 39.40 | 4.52 |
357 | 6810 | 7.961325 | AAATACTTGGCGAACATTTTTCATT | 57.039 | 28.000 | 0.00 | 0.00 | 0.00 | 2.57 |
631 | 7087 | 7.697352 | TCAAATGTTTATGCAGAGTGTTTTG | 57.303 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
636 | 7092 | 7.979115 | TGTTTATGCAGAGTGTTTTGTTAAC | 57.021 | 32.000 | 0.00 | 0.00 | 0.00 | 2.01 |
638 | 7094 | 7.913297 | TGTTTATGCAGAGTGTTTTGTTAACTC | 59.087 | 33.333 | 7.22 | 0.00 | 40.53 | 3.01 |
664 | 7120 | 3.558033 | TGGTGGTAGGAAACTTTTGTCC | 58.442 | 45.455 | 0.00 | 0.00 | 43.67 | 4.02 |
668 | 7124 | 6.272792 | TGGTGGTAGGAAACTTTTGTCCTATA | 59.727 | 38.462 | 2.90 | 0.00 | 45.89 | 1.31 |
784 | 7242 | 4.379243 | CGGCCTGGTCTCGTGCTT | 62.379 | 66.667 | 0.00 | 0.00 | 0.00 | 3.91 |
807 | 7265 | 4.452733 | GCGAGGCTGCCCTACGTT | 62.453 | 66.667 | 23.48 | 4.25 | 43.12 | 3.99 |
809 | 7267 | 1.810030 | CGAGGCTGCCCTACGTTTC | 60.810 | 63.158 | 16.57 | 3.23 | 43.12 | 2.78 |
857 | 7315 | 2.152016 | GTAAGGCGCCTCAAGAACTTT | 58.848 | 47.619 | 32.93 | 13.62 | 0.00 | 2.66 |
921 | 7848 | 2.496111 | AGTTTCAGACTCTCGTCGACT | 58.504 | 47.619 | 14.70 | 0.00 | 44.93 | 4.18 |
950 | 7877 | 1.219664 | CCGCCAAGAACCGATACCA | 59.780 | 57.895 | 0.00 | 0.00 | 0.00 | 3.25 |
976 | 7913 | 4.770531 | CCGAGGTTCCATGGTATATACAGA | 59.229 | 45.833 | 12.58 | 1.04 | 0.00 | 3.41 |
987 | 7924 | 4.278919 | TGGTATATACAGAACCGATCGCAA | 59.721 | 41.667 | 10.32 | 0.00 | 35.98 | 4.85 |
1095 | 8033 | 2.890474 | CCGATCGGCGTTCCCTTG | 60.890 | 66.667 | 23.37 | 0.00 | 38.67 | 3.61 |
1096 | 8034 | 2.890474 | CGATCGGCGTTCCCTTGG | 60.890 | 66.667 | 7.38 | 0.00 | 34.64 | 3.61 |
1097 | 8035 | 2.267961 | GATCGGCGTTCCCTTGGT | 59.732 | 61.111 | 6.85 | 0.00 | 0.00 | 3.67 |
1098 | 8036 | 2.046314 | ATCGGCGTTCCCTTGGTG | 60.046 | 61.111 | 6.85 | 0.00 | 0.00 | 4.17 |
1102 | 8040 | 4.025401 | GCGTTCCCTTGGTGCGTG | 62.025 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
1103 | 8041 | 4.025401 | CGTTCCCTTGGTGCGTGC | 62.025 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
1104 | 8042 | 4.025401 | GTTCCCTTGGTGCGTGCG | 62.025 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
1179 | 8173 | 3.891586 | GACGACGACGCAGAAGCCA | 62.892 | 63.158 | 7.30 | 0.00 | 43.96 | 4.75 |
1478 | 8472 | 2.496817 | GCAGTAGCCCTCGACAGG | 59.503 | 66.667 | 0.00 | 0.00 | 39.98 | 4.00 |
1509 | 8603 | 7.295322 | TGATGGACTCTAAGAGATGTATTGG | 57.705 | 40.000 | 0.00 | 0.00 | 33.32 | 3.16 |
1512 | 8606 | 5.299531 | TGGACTCTAAGAGATGTATTGGTCG | 59.700 | 44.000 | 0.00 | 0.00 | 33.32 | 4.79 |
1531 | 8736 | 6.761312 | TGGTCGGAGAAAAGTGTAAAGATTA | 58.239 | 36.000 | 0.00 | 0.00 | 39.69 | 1.75 |
1543 | 8748 | 9.515226 | AAAGTGTAAAGATTATACTTCTTGCCA | 57.485 | 29.630 | 11.13 | 0.00 | 33.79 | 4.92 |
1548 | 8753 | 9.601217 | GTAAAGATTATACTTCTTGCCAAGAGA | 57.399 | 33.333 | 7.29 | 0.00 | 39.03 | 3.10 |
1587 | 8796 | 8.443953 | AAAGATAGATAGCAATCCAGTTGAAC | 57.556 | 34.615 | 0.00 | 0.00 | 40.37 | 3.18 |
1616 | 8825 | 6.658816 | TCTTCCACAAGTTGCACATACATAAT | 59.341 | 34.615 | 1.81 | 0.00 | 0.00 | 1.28 |
1620 | 8829 | 7.176515 | TCCACAAGTTGCACATACATAATCTTT | 59.823 | 33.333 | 1.81 | 0.00 | 0.00 | 2.52 |
1622 | 8831 | 7.809331 | CACAAGTTGCACATACATAATCTTTGT | 59.191 | 33.333 | 1.81 | 0.00 | 0.00 | 2.83 |
1623 | 8832 | 9.008965 | ACAAGTTGCACATACATAATCTTTGTA | 57.991 | 29.630 | 1.81 | 0.00 | 34.29 | 2.41 |
1624 | 8833 | 9.277565 | CAAGTTGCACATACATAATCTTTGTAC | 57.722 | 33.333 | 0.00 | 0.00 | 32.70 | 2.90 |
1625 | 8834 | 8.792830 | AGTTGCACATACATAATCTTTGTACT | 57.207 | 30.769 | 0.00 | 0.00 | 32.70 | 2.73 |
1626 | 8835 | 8.883731 | AGTTGCACATACATAATCTTTGTACTC | 58.116 | 33.333 | 0.00 | 0.00 | 32.70 | 2.59 |
1628 | 8837 | 6.765989 | TGCACATACATAATCTTTGTACTCCC | 59.234 | 38.462 | 0.00 | 0.00 | 32.70 | 4.30 |
1629 | 8838 | 6.992715 | GCACATACATAATCTTTGTACTCCCT | 59.007 | 38.462 | 0.00 | 0.00 | 32.70 | 4.20 |
1630 | 8839 | 7.171678 | GCACATACATAATCTTTGTACTCCCTC | 59.828 | 40.741 | 0.00 | 0.00 | 32.70 | 4.30 |
1631 | 8840 | 8.424918 | CACATACATAATCTTTGTACTCCCTCT | 58.575 | 37.037 | 0.00 | 0.00 | 32.70 | 3.69 |
1632 | 8841 | 8.424918 | ACATACATAATCTTTGTACTCCCTCTG | 58.575 | 37.037 | 0.00 | 0.00 | 32.70 | 3.35 |
1633 | 8842 | 6.875972 | ACATAATCTTTGTACTCCCTCTGT | 57.124 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
1634 | 8843 | 7.259088 | ACATAATCTTTGTACTCCCTCTGTT | 57.741 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1635 | 8844 | 7.331791 | ACATAATCTTTGTACTCCCTCTGTTC | 58.668 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
1636 | 8845 | 4.828072 | ATCTTTGTACTCCCTCTGTTCC | 57.172 | 45.455 | 0.00 | 0.00 | 0.00 | 3.62 |
1637 | 8846 | 3.858135 | TCTTTGTACTCCCTCTGTTCCT | 58.142 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
1638 | 8847 | 5.006896 | TCTTTGTACTCCCTCTGTTCCTA | 57.993 | 43.478 | 0.00 | 0.00 | 0.00 | 2.94 |
1639 | 8848 | 5.399991 | TCTTTGTACTCCCTCTGTTCCTAA | 58.600 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
1640 | 8849 | 5.842328 | TCTTTGTACTCCCTCTGTTCCTAAA | 59.158 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
1641 | 8850 | 6.500751 | TCTTTGTACTCCCTCTGTTCCTAAAT | 59.499 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
1642 | 8851 | 7.676893 | TCTTTGTACTCCCTCTGTTCCTAAATA | 59.323 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
1643 | 8852 | 7.989947 | TTGTACTCCCTCTGTTCCTAAATAT | 57.010 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
1644 | 8853 | 9.496710 | TTTGTACTCCCTCTGTTCCTAAATATA | 57.503 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
1645 | 8854 | 9.496710 | TTGTACTCCCTCTGTTCCTAAATATAA | 57.503 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
1646 | 8855 | 9.144298 | TGTACTCCCTCTGTTCCTAAATATAAG | 57.856 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
1647 | 8856 | 9.145442 | GTACTCCCTCTGTTCCTAAATATAAGT | 57.855 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
1648 | 8857 | 8.252624 | ACTCCCTCTGTTCCTAAATATAAGTC | 57.747 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
1649 | 8858 | 8.068733 | ACTCCCTCTGTTCCTAAATATAAGTCT | 58.931 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
1650 | 8859 | 8.855804 | TCCCTCTGTTCCTAAATATAAGTCTT | 57.144 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
1651 | 8860 | 9.280456 | TCCCTCTGTTCCTAAATATAAGTCTTT | 57.720 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1652 | 8861 | 9.331282 | CCCTCTGTTCCTAAATATAAGTCTTTG | 57.669 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
1653 | 8862 | 9.892130 | CCTCTGTTCCTAAATATAAGTCTTTGT | 57.108 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
1668 | 8877 | 6.672266 | AGTCTTTGTAGAGATTTCACCAGA | 57.328 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
1669 | 8878 | 7.251321 | AGTCTTTGTAGAGATTTCACCAGAT | 57.749 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1670 | 8879 | 8.367660 | AGTCTTTGTAGAGATTTCACCAGATA | 57.632 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
1671 | 8880 | 8.474025 | AGTCTTTGTAGAGATTTCACCAGATAG | 58.526 | 37.037 | 0.00 | 0.00 | 0.00 | 2.08 |
1672 | 8881 | 8.470805 | GTCTTTGTAGAGATTTCACCAGATAGA | 58.529 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
1673 | 8882 | 8.470805 | TCTTTGTAGAGATTTCACCAGATAGAC | 58.529 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
1674 | 8883 | 7.962995 | TTGTAGAGATTTCACCAGATAGACT | 57.037 | 36.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1675 | 8884 | 9.475620 | TTTGTAGAGATTTCACCAGATAGACTA | 57.524 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
1676 | 8885 | 8.453238 | TGTAGAGATTTCACCAGATAGACTAC | 57.547 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
1677 | 8886 | 8.053355 | TGTAGAGATTTCACCAGATAGACTACA | 58.947 | 37.037 | 0.00 | 0.00 | 34.91 | 2.74 |
1678 | 8887 | 9.073475 | GTAGAGATTTCACCAGATAGACTACAT | 57.927 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
1680 | 8889 | 9.073475 | AGAGATTTCACCAGATAGACTACATAC | 57.927 | 37.037 | 0.00 | 0.00 | 0.00 | 2.39 |
1681 | 8890 | 7.877003 | AGATTTCACCAGATAGACTACATACG | 58.123 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
1682 | 8891 | 7.720074 | AGATTTCACCAGATAGACTACATACGA | 59.280 | 37.037 | 0.00 | 0.00 | 0.00 | 3.43 |
1683 | 8892 | 7.634671 | TTTCACCAGATAGACTACATACGAA | 57.365 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1684 | 8893 | 6.862711 | TCACCAGATAGACTACATACGAAG | 57.137 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
1685 | 8894 | 5.238868 | TCACCAGATAGACTACATACGAAGC | 59.761 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1686 | 8895 | 5.008712 | CACCAGATAGACTACATACGAAGCA | 59.991 | 44.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1687 | 8896 | 5.593095 | ACCAGATAGACTACATACGAAGCAA | 59.407 | 40.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1688 | 8897 | 6.096423 | ACCAGATAGACTACATACGAAGCAAA | 59.904 | 38.462 | 0.00 | 0.00 | 0.00 | 3.68 |
1689 | 8898 | 6.978659 | CCAGATAGACTACATACGAAGCAAAA | 59.021 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
1690 | 8899 | 7.653713 | CCAGATAGACTACATACGAAGCAAAAT | 59.346 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
1691 | 8900 | 8.483218 | CAGATAGACTACATACGAAGCAAAATG | 58.517 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
1692 | 8901 | 8.414003 | AGATAGACTACATACGAAGCAAAATGA | 58.586 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1693 | 8902 | 9.197694 | GATAGACTACATACGAAGCAAAATGAT | 57.802 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
1694 | 8903 | 7.849804 | AGACTACATACGAAGCAAAATGATT | 57.150 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1695 | 8904 | 7.688372 | AGACTACATACGAAGCAAAATGATTG | 58.312 | 34.615 | 0.00 | 0.00 | 0.00 | 2.67 |
1696 | 8905 | 7.549134 | AGACTACATACGAAGCAAAATGATTGA | 59.451 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1697 | 8906 | 8.039603 | ACTACATACGAAGCAAAATGATTGAA | 57.960 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
1698 | 8907 | 8.677300 | ACTACATACGAAGCAAAATGATTGAAT | 58.323 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
1699 | 8908 | 7.975866 | ACATACGAAGCAAAATGATTGAATC | 57.024 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1700 | 8909 | 7.765307 | ACATACGAAGCAAAATGATTGAATCT | 58.235 | 30.769 | 6.73 | 0.00 | 0.00 | 2.40 |
1701 | 8910 | 8.892723 | ACATACGAAGCAAAATGATTGAATCTA | 58.107 | 29.630 | 6.73 | 0.00 | 0.00 | 1.98 |
1702 | 8911 | 9.720667 | CATACGAAGCAAAATGATTGAATCTAA | 57.279 | 29.630 | 6.73 | 0.00 | 0.00 | 2.10 |
1704 | 8913 | 8.452989 | ACGAAGCAAAATGATTGAATCTAAAC | 57.547 | 30.769 | 6.73 | 0.00 | 0.00 | 2.01 |
1705 | 8914 | 8.299570 | ACGAAGCAAAATGATTGAATCTAAACT | 58.700 | 29.630 | 6.73 | 0.00 | 0.00 | 2.66 |
1706 | 8915 | 9.132521 | CGAAGCAAAATGATTGAATCTAAACTT | 57.867 | 29.630 | 6.73 | 3.21 | 0.00 | 2.66 |
1716 | 8925 | 9.638239 | TGATTGAATCTAAACTTAAAATGCACC | 57.362 | 29.630 | 6.73 | 0.00 | 0.00 | 5.01 |
1717 | 8926 | 9.860898 | GATTGAATCTAAACTTAAAATGCACCT | 57.139 | 29.630 | 0.00 | 0.00 | 0.00 | 4.00 |
1728 | 8937 | 8.547967 | ACTTAAAATGCACCTATATACATCCG | 57.452 | 34.615 | 0.00 | 0.00 | 0.00 | 4.18 |
1729 | 8938 | 8.154856 | ACTTAAAATGCACCTATATACATCCGT | 58.845 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
1730 | 8939 | 9.647797 | CTTAAAATGCACCTATATACATCCGTA | 57.352 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
1732 | 8941 | 8.492673 | AAAATGCACCTATATACATCCGTATG | 57.507 | 34.615 | 0.00 | 0.00 | 38.79 | 2.39 |
1734 | 8943 | 5.961272 | TGCACCTATATACATCCGTATGTG | 58.039 | 41.667 | 3.56 | 0.00 | 45.99 | 3.21 |
1735 | 8944 | 5.105513 | TGCACCTATATACATCCGTATGTGG | 60.106 | 44.000 | 3.56 | 0.00 | 45.99 | 4.17 |
1736 | 8945 | 5.105473 | GCACCTATATACATCCGTATGTGGT | 60.105 | 44.000 | 3.56 | 0.00 | 45.99 | 4.16 |
1737 | 8946 | 6.573680 | GCACCTATATACATCCGTATGTGGTT | 60.574 | 42.308 | 3.56 | 0.00 | 45.99 | 3.67 |
1738 | 8947 | 7.033791 | CACCTATATACATCCGTATGTGGTTC | 58.966 | 42.308 | 3.56 | 0.00 | 45.99 | 3.62 |
1739 | 8948 | 6.722590 | ACCTATATACATCCGTATGTGGTTCA | 59.277 | 38.462 | 3.56 | 0.00 | 45.99 | 3.18 |
1740 | 8949 | 7.399191 | ACCTATATACATCCGTATGTGGTTCAT | 59.601 | 37.037 | 3.56 | 0.00 | 45.99 | 2.57 |
1741 | 8950 | 8.909923 | CCTATATACATCCGTATGTGGTTCATA | 58.090 | 37.037 | 3.56 | 0.00 | 45.99 | 2.15 |
1742 | 8951 | 9.952188 | CTATATACATCCGTATGTGGTTCATAG | 57.048 | 37.037 | 3.56 | 0.80 | 45.99 | 2.23 |
1743 | 8952 | 6.665992 | ATACATCCGTATGTGGTTCATAGT | 57.334 | 37.500 | 3.56 | 0.00 | 45.99 | 2.12 |
1744 | 8953 | 4.693283 | ACATCCGTATGTGGTTCATAGTG | 58.307 | 43.478 | 0.00 | 0.00 | 44.79 | 2.74 |
1745 | 8954 | 4.404394 | ACATCCGTATGTGGTTCATAGTGA | 59.596 | 41.667 | 0.00 | 0.00 | 44.79 | 3.41 |
1746 | 8955 | 5.105106 | ACATCCGTATGTGGTTCATAGTGAA | 60.105 | 40.000 | 0.00 | 0.00 | 44.79 | 3.18 |
1747 | 8956 | 5.408880 | TCCGTATGTGGTTCATAGTGAAA | 57.591 | 39.130 | 0.00 | 0.00 | 38.22 | 2.69 |
1748 | 8957 | 5.984725 | TCCGTATGTGGTTCATAGTGAAAT | 58.015 | 37.500 | 0.00 | 0.00 | 38.22 | 2.17 |
1749 | 8958 | 6.046593 | TCCGTATGTGGTTCATAGTGAAATC | 58.953 | 40.000 | 0.00 | 0.00 | 38.22 | 2.17 |
1750 | 8959 | 6.049149 | CCGTATGTGGTTCATAGTGAAATCT | 58.951 | 40.000 | 0.00 | 0.00 | 38.22 | 2.40 |
1751 | 8960 | 6.201044 | CCGTATGTGGTTCATAGTGAAATCTC | 59.799 | 42.308 | 0.00 | 0.00 | 38.22 | 2.75 |
1752 | 8961 | 6.980978 | CGTATGTGGTTCATAGTGAAATCTCT | 59.019 | 38.462 | 0.00 | 0.00 | 38.22 | 3.10 |
1753 | 8962 | 8.135529 | CGTATGTGGTTCATAGTGAAATCTCTA | 58.864 | 37.037 | 0.00 | 0.00 | 38.22 | 2.43 |
1754 | 8963 | 9.250624 | GTATGTGGTTCATAGTGAAATCTCTAC | 57.749 | 37.037 | 0.00 | 0.00 | 38.22 | 2.59 |
1755 | 8964 | 7.239763 | TGTGGTTCATAGTGAAATCTCTACA | 57.760 | 36.000 | 0.00 | 0.00 | 38.22 | 2.74 |
1756 | 8965 | 7.676004 | TGTGGTTCATAGTGAAATCTCTACAA | 58.324 | 34.615 | 0.00 | 0.00 | 38.22 | 2.41 |
1757 | 8966 | 8.154203 | TGTGGTTCATAGTGAAATCTCTACAAA | 58.846 | 33.333 | 0.00 | 0.00 | 38.22 | 2.83 |
1758 | 8967 | 8.660373 | GTGGTTCATAGTGAAATCTCTACAAAG | 58.340 | 37.037 | 0.00 | 0.00 | 38.22 | 2.77 |
1759 | 8968 | 8.593679 | TGGTTCATAGTGAAATCTCTACAAAGA | 58.406 | 33.333 | 0.00 | 0.00 | 38.22 | 2.52 |
1760 | 8969 | 8.874816 | GGTTCATAGTGAAATCTCTACAAAGAC | 58.125 | 37.037 | 0.00 | 0.00 | 38.22 | 3.01 |
1761 | 8970 | 9.646427 | GTTCATAGTGAAATCTCTACAAAGACT | 57.354 | 33.333 | 0.00 | 0.00 | 38.22 | 3.24 |
1779 | 8988 | 9.379791 | ACAAAGACTTATATTTAGAAACGGAGG | 57.620 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
1780 | 8989 | 8.827677 | CAAAGACTTATATTTAGAAACGGAGGG | 58.172 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
1781 | 8990 | 7.909485 | AGACTTATATTTAGAAACGGAGGGA | 57.091 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1782 | 8991 | 7.953752 | AGACTTATATTTAGAAACGGAGGGAG | 58.046 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
1783 | 8992 | 7.564292 | AGACTTATATTTAGAAACGGAGGGAGT | 59.436 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
1784 | 8993 | 8.773033 | ACTTATATTTAGAAACGGAGGGAGTA | 57.227 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
1785 | 8994 | 9.377238 | ACTTATATTTAGAAACGGAGGGAGTAT | 57.623 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
1786 | 8995 | 9.857957 | CTTATATTTAGAAACGGAGGGAGTATC | 57.142 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
1787 | 8996 | 9.597681 | TTATATTTAGAAACGGAGGGAGTATCT | 57.402 | 33.333 | 0.00 | 0.00 | 33.73 | 1.98 |
1788 | 8997 | 5.848833 | TTTAGAAACGGAGGGAGTATCTC | 57.151 | 43.478 | 0.00 | 0.00 | 33.92 | 2.75 |
1876 | 9666 | 3.445008 | TCAGTAGACAGAGCTTCCCAAT | 58.555 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1877 | 9667 | 3.449018 | TCAGTAGACAGAGCTTCCCAATC | 59.551 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
1954 | 9744 | 3.826729 | AGAAAACACAATGAAGGGCCTAC | 59.173 | 43.478 | 6.41 | 0.00 | 0.00 | 3.18 |
1970 | 9767 | 2.868839 | GCCTACAAGCTACAACCGACAA | 60.869 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1971 | 9768 | 3.596214 | CCTACAAGCTACAACCGACAAT | 58.404 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
1972 | 9769 | 3.370978 | CCTACAAGCTACAACCGACAATG | 59.629 | 47.826 | 0.00 | 0.00 | 0.00 | 2.82 |
1973 | 9770 | 1.535462 | ACAAGCTACAACCGACAATGC | 59.465 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
1974 | 9771 | 1.806542 | CAAGCTACAACCGACAATGCT | 59.193 | 47.619 | 0.00 | 0.00 | 0.00 | 3.79 |
2027 | 9851 | 1.001706 | GGAACAACGAAAACCTCCTGC | 60.002 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
2081 | 9905 | 0.969894 | ACGGCCATATCTCCAGCTAC | 59.030 | 55.000 | 2.24 | 0.00 | 0.00 | 3.58 |
2378 | 10202 | 1.470098 | GCAACTTCCTGGCACTACATG | 59.530 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
2382 | 10206 | 2.573462 | ACTTCCTGGCACTACATGTCAT | 59.427 | 45.455 | 0.00 | 0.00 | 43.62 | 3.06 |
2413 | 10238 | 2.386661 | TCAAGAGGAATTCGAGTGCC | 57.613 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2419 | 10244 | 3.635373 | AGAGGAATTCGAGTGCCGTAATA | 59.365 | 43.478 | 0.00 | 0.00 | 39.75 | 0.98 |
2437 | 10262 | 6.019479 | CCGTAATACAGAGAAGTGAGAAATGC | 60.019 | 42.308 | 0.00 | 0.00 | 0.00 | 3.56 |
2438 | 10263 | 6.291322 | CGTAATACAGAGAAGTGAGAAATGCG | 60.291 | 42.308 | 0.00 | 0.00 | 0.00 | 4.73 |
2439 | 10264 | 3.667497 | ACAGAGAAGTGAGAAATGCGA | 57.333 | 42.857 | 0.00 | 0.00 | 0.00 | 5.10 |
2440 | 10265 | 4.199432 | ACAGAGAAGTGAGAAATGCGAT | 57.801 | 40.909 | 0.00 | 0.00 | 0.00 | 4.58 |
2441 | 10266 | 3.931468 | ACAGAGAAGTGAGAAATGCGATG | 59.069 | 43.478 | 0.00 | 0.00 | 0.00 | 3.84 |
2442 | 10267 | 4.179298 | CAGAGAAGTGAGAAATGCGATGA | 58.821 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
2443 | 10268 | 4.809958 | CAGAGAAGTGAGAAATGCGATGAT | 59.190 | 41.667 | 0.00 | 0.00 | 0.00 | 2.45 |
2444 | 10269 | 5.049167 | AGAGAAGTGAGAAATGCGATGATC | 58.951 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
2445 | 10270 | 4.763073 | AGAAGTGAGAAATGCGATGATCA | 58.237 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
2446 | 10271 | 5.181009 | AGAAGTGAGAAATGCGATGATCAA | 58.819 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
291 | 6741 | 9.961264 | TGTATAAAAATATTCCTGGTGTGTACA | 57.039 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
631 | 7087 | 5.416271 | TCCTACCACCAATGAGAGTTAAC | 57.584 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
636 | 7092 | 4.559862 | AGTTTCCTACCACCAATGAGAG | 57.440 | 45.455 | 0.00 | 0.00 | 0.00 | 3.20 |
638 | 7094 | 5.301805 | ACAAAAGTTTCCTACCACCAATGAG | 59.698 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
770 | 7228 | 0.108898 | CTGAGAAGCACGAGACCAGG | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
772 | 7230 | 1.967535 | CCTGAGAAGCACGAGACCA | 59.032 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
921 | 7848 | 3.680620 | CTTGGCGGGATTCGGAGCA | 62.681 | 63.158 | 0.00 | 0.00 | 39.69 | 4.26 |
950 | 7877 | 1.140312 | ATACCATGGAACCTCGGCAT | 58.860 | 50.000 | 21.47 | 0.00 | 0.00 | 4.40 |
976 | 7913 | 2.461110 | GCGGTGATTGCGATCGGTT | 61.461 | 57.895 | 18.30 | 0.00 | 34.91 | 4.44 |
987 | 7924 | 0.889186 | GGTTGTGGACTTGCGGTGAT | 60.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1078 | 8016 | 2.890474 | CAAGGGAACGCCGATCGG | 60.890 | 66.667 | 30.03 | 30.03 | 43.86 | 4.18 |
1079 | 8017 | 2.890474 | CCAAGGGAACGCCGATCG | 60.890 | 66.667 | 8.51 | 8.51 | 45.38 | 3.69 |
1080 | 8018 | 2.106683 | CACCAAGGGAACGCCGATC | 61.107 | 63.158 | 0.00 | 0.00 | 33.83 | 3.69 |
1081 | 8019 | 2.046314 | CACCAAGGGAACGCCGAT | 60.046 | 61.111 | 0.00 | 0.00 | 33.83 | 4.18 |
1085 | 8023 | 4.025401 | CACGCACCAAGGGAACGC | 62.025 | 66.667 | 0.00 | 0.00 | 0.00 | 4.84 |
1086 | 8024 | 4.025401 | GCACGCACCAAGGGAACG | 62.025 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
1087 | 8025 | 4.025401 | CGCACGCACCAAGGGAAC | 62.025 | 66.667 | 0.00 | 0.00 | 0.00 | 3.62 |
1120 | 8058 | 4.969196 | CCCCATGGCGTCGATCGG | 62.969 | 72.222 | 16.41 | 0.48 | 40.26 | 4.18 |
1124 | 8062 | 2.515996 | GAAGAACCCCATGGCGTCGA | 62.516 | 60.000 | 6.09 | 0.00 | 33.59 | 4.20 |
1474 | 8468 | 4.054359 | AGAGTCCATCAACTACTCCTGT | 57.946 | 45.455 | 0.00 | 0.00 | 40.42 | 4.00 |
1475 | 8469 | 5.888724 | TCTTAGAGTCCATCAACTACTCCTG | 59.111 | 44.000 | 0.00 | 0.00 | 40.42 | 3.86 |
1477 | 8471 | 6.123651 | TCTCTTAGAGTCCATCAACTACTCC | 58.876 | 44.000 | 9.25 | 0.00 | 40.42 | 3.85 |
1478 | 8472 | 7.284489 | ACATCTCTTAGAGTCCATCAACTACTC | 59.716 | 40.741 | 9.25 | 0.00 | 39.95 | 2.59 |
1509 | 8603 | 9.583765 | AGTATAATCTTTACACTTTTCTCCGAC | 57.416 | 33.333 | 0.00 | 0.00 | 0.00 | 4.79 |
1531 | 8736 | 6.711277 | TGTTACATCTCTTGGCAAGAAGTAT | 58.289 | 36.000 | 28.27 | 19.04 | 37.02 | 2.12 |
1587 | 8796 | 2.159448 | TGTGCAACTTGTGGAAGAAACG | 60.159 | 45.455 | 0.00 | 0.00 | 38.04 | 3.60 |
1616 | 8825 | 3.858135 | AGGAACAGAGGGAGTACAAAGA | 58.142 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
1620 | 8829 | 9.144298 | CTTATATTTAGGAACAGAGGGAGTACA | 57.856 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
1622 | 8831 | 9.364653 | GACTTATATTTAGGAACAGAGGGAGTA | 57.635 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
1623 | 8832 | 8.068733 | AGACTTATATTTAGGAACAGAGGGAGT | 58.931 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
1624 | 8833 | 8.485578 | AGACTTATATTTAGGAACAGAGGGAG | 57.514 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
1625 | 8834 | 8.855804 | AAGACTTATATTTAGGAACAGAGGGA | 57.144 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
1626 | 8835 | 9.331282 | CAAAGACTTATATTTAGGAACAGAGGG | 57.669 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
1642 | 8851 | 8.816894 | TCTGGTGAAATCTCTACAAAGACTTAT | 58.183 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
1643 | 8852 | 8.190326 | TCTGGTGAAATCTCTACAAAGACTTA | 57.810 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
1644 | 8853 | 7.067496 | TCTGGTGAAATCTCTACAAAGACTT | 57.933 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1645 | 8854 | 6.672266 | TCTGGTGAAATCTCTACAAAGACT | 57.328 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
1646 | 8855 | 8.470805 | TCTATCTGGTGAAATCTCTACAAAGAC | 58.529 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
1647 | 8856 | 8.470805 | GTCTATCTGGTGAAATCTCTACAAAGA | 58.529 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
1648 | 8857 | 8.474025 | AGTCTATCTGGTGAAATCTCTACAAAG | 58.526 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
1649 | 8858 | 8.367660 | AGTCTATCTGGTGAAATCTCTACAAA | 57.632 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
1650 | 8859 | 7.962995 | AGTCTATCTGGTGAAATCTCTACAA | 57.037 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1651 | 8860 | 8.053355 | TGTAGTCTATCTGGTGAAATCTCTACA | 58.947 | 37.037 | 0.00 | 0.00 | 33.27 | 2.74 |
1652 | 8861 | 8.453238 | TGTAGTCTATCTGGTGAAATCTCTAC | 57.547 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
1654 | 8863 | 9.073475 | GTATGTAGTCTATCTGGTGAAATCTCT | 57.927 | 37.037 | 0.00 | 0.00 | 0.00 | 3.10 |
1655 | 8864 | 8.018520 | CGTATGTAGTCTATCTGGTGAAATCTC | 58.981 | 40.741 | 0.00 | 0.00 | 0.00 | 2.75 |
1656 | 8865 | 7.720074 | TCGTATGTAGTCTATCTGGTGAAATCT | 59.280 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
1657 | 8866 | 7.872881 | TCGTATGTAGTCTATCTGGTGAAATC | 58.127 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
1658 | 8867 | 7.818997 | TCGTATGTAGTCTATCTGGTGAAAT | 57.181 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1659 | 8868 | 7.634671 | TTCGTATGTAGTCTATCTGGTGAAA | 57.365 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1660 | 8869 | 6.238676 | GCTTCGTATGTAGTCTATCTGGTGAA | 60.239 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
1661 | 8870 | 5.238868 | GCTTCGTATGTAGTCTATCTGGTGA | 59.761 | 44.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1662 | 8871 | 5.008712 | TGCTTCGTATGTAGTCTATCTGGTG | 59.991 | 44.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1663 | 8872 | 5.131067 | TGCTTCGTATGTAGTCTATCTGGT | 58.869 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
1664 | 8873 | 5.690997 | TGCTTCGTATGTAGTCTATCTGG | 57.309 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
1665 | 8874 | 7.987268 | TTTTGCTTCGTATGTAGTCTATCTG | 57.013 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1666 | 8875 | 8.414003 | TCATTTTGCTTCGTATGTAGTCTATCT | 58.586 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
1667 | 8876 | 8.575565 | TCATTTTGCTTCGTATGTAGTCTATC | 57.424 | 34.615 | 0.00 | 0.00 | 0.00 | 2.08 |
1668 | 8877 | 9.547753 | AATCATTTTGCTTCGTATGTAGTCTAT | 57.452 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
1669 | 8878 | 8.817100 | CAATCATTTTGCTTCGTATGTAGTCTA | 58.183 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
1670 | 8879 | 7.549134 | TCAATCATTTTGCTTCGTATGTAGTCT | 59.451 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
1671 | 8880 | 7.684670 | TCAATCATTTTGCTTCGTATGTAGTC | 58.315 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
1672 | 8881 | 7.609760 | TCAATCATTTTGCTTCGTATGTAGT | 57.390 | 32.000 | 0.00 | 0.00 | 0.00 | 2.73 |
1673 | 8882 | 9.162793 | GATTCAATCATTTTGCTTCGTATGTAG | 57.837 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
1674 | 8883 | 8.892723 | AGATTCAATCATTTTGCTTCGTATGTA | 58.107 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
1675 | 8884 | 7.765307 | AGATTCAATCATTTTGCTTCGTATGT | 58.235 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
1676 | 8885 | 9.720667 | TTAGATTCAATCATTTTGCTTCGTATG | 57.279 | 29.630 | 0.00 | 0.00 | 0.00 | 2.39 |
1678 | 8887 | 9.554724 | GTTTAGATTCAATCATTTTGCTTCGTA | 57.445 | 29.630 | 0.00 | 0.00 | 0.00 | 3.43 |
1679 | 8888 | 8.299570 | AGTTTAGATTCAATCATTTTGCTTCGT | 58.700 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
1680 | 8889 | 8.679288 | AGTTTAGATTCAATCATTTTGCTTCG | 57.321 | 30.769 | 0.00 | 0.00 | 0.00 | 3.79 |
1690 | 8899 | 9.638239 | GGTGCATTTTAAGTTTAGATTCAATCA | 57.362 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
1691 | 8900 | 9.860898 | AGGTGCATTTTAAGTTTAGATTCAATC | 57.139 | 29.630 | 0.00 | 0.00 | 0.00 | 2.67 |
1702 | 8911 | 8.999431 | CGGATGTATATAGGTGCATTTTAAGTT | 58.001 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
1703 | 8912 | 8.154856 | ACGGATGTATATAGGTGCATTTTAAGT | 58.845 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1704 | 8913 | 8.547967 | ACGGATGTATATAGGTGCATTTTAAG | 57.452 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
1706 | 8915 | 9.594478 | CATACGGATGTATATAGGTGCATTTTA | 57.406 | 33.333 | 0.00 | 0.00 | 39.28 | 1.52 |
1707 | 8916 | 8.100791 | ACATACGGATGTATATAGGTGCATTTT | 58.899 | 33.333 | 12.79 | 0.00 | 44.77 | 1.82 |
1708 | 8917 | 7.549134 | CACATACGGATGTATATAGGTGCATTT | 59.451 | 37.037 | 14.23 | 0.00 | 44.82 | 2.32 |
1709 | 8918 | 7.041721 | CACATACGGATGTATATAGGTGCATT | 58.958 | 38.462 | 14.23 | 0.00 | 44.82 | 3.56 |
1710 | 8919 | 6.406961 | CCACATACGGATGTATATAGGTGCAT | 60.407 | 42.308 | 14.23 | 0.00 | 44.82 | 3.96 |
1711 | 8920 | 5.105513 | CCACATACGGATGTATATAGGTGCA | 60.106 | 44.000 | 14.23 | 0.00 | 44.82 | 4.57 |
1712 | 8921 | 5.105473 | ACCACATACGGATGTATATAGGTGC | 60.105 | 44.000 | 14.23 | 0.00 | 44.82 | 5.01 |
1713 | 8922 | 6.525578 | ACCACATACGGATGTATATAGGTG | 57.474 | 41.667 | 14.23 | 0.00 | 44.82 | 4.00 |
1714 | 8923 | 6.722590 | TGAACCACATACGGATGTATATAGGT | 59.277 | 38.462 | 14.23 | 13.36 | 44.82 | 3.08 |
1715 | 8924 | 7.165460 | TGAACCACATACGGATGTATATAGG | 57.835 | 40.000 | 14.23 | 12.65 | 44.82 | 2.57 |
1716 | 8925 | 9.952188 | CTATGAACCACATACGGATGTATATAG | 57.048 | 37.037 | 14.23 | 12.28 | 44.82 | 1.31 |
1717 | 8926 | 9.470399 | ACTATGAACCACATACGGATGTATATA | 57.530 | 33.333 | 14.23 | 7.10 | 44.82 | 0.86 |
1718 | 8927 | 8.251026 | CACTATGAACCACATACGGATGTATAT | 58.749 | 37.037 | 14.23 | 1.68 | 44.82 | 0.86 |
1719 | 8928 | 7.449086 | TCACTATGAACCACATACGGATGTATA | 59.551 | 37.037 | 14.23 | 6.48 | 44.82 | 1.47 |
1720 | 8929 | 6.266786 | TCACTATGAACCACATACGGATGTAT | 59.733 | 38.462 | 14.23 | 5.54 | 44.82 | 2.29 |
1721 | 8930 | 5.595133 | TCACTATGAACCACATACGGATGTA | 59.405 | 40.000 | 14.23 | 0.00 | 44.82 | 2.29 |
1722 | 8931 | 5.105106 | TTCACTATGAACCACATACGGATGT | 60.105 | 40.000 | 7.68 | 7.68 | 37.89 | 3.06 |
1723 | 8932 | 4.944048 | TCACTATGAACCACATACGGATG | 58.056 | 43.478 | 5.94 | 5.94 | 40.07 | 3.51 |
1724 | 8933 | 5.607939 | TTCACTATGAACCACATACGGAT | 57.392 | 39.130 | 0.00 | 0.00 | 40.07 | 4.18 |
1725 | 8934 | 5.408880 | TTTCACTATGAACCACATACGGA | 57.591 | 39.130 | 0.00 | 0.00 | 35.89 | 4.69 |
1726 | 8935 | 6.049149 | AGATTTCACTATGAACCACATACGG | 58.951 | 40.000 | 0.00 | 0.00 | 35.89 | 4.02 |
1727 | 8936 | 6.980978 | AGAGATTTCACTATGAACCACATACG | 59.019 | 38.462 | 0.00 | 0.00 | 35.89 | 3.06 |
1728 | 8937 | 9.250624 | GTAGAGATTTCACTATGAACCACATAC | 57.749 | 37.037 | 0.00 | 0.00 | 35.89 | 2.39 |
1729 | 8938 | 8.977412 | TGTAGAGATTTCACTATGAACCACATA | 58.023 | 33.333 | 0.00 | 0.00 | 35.89 | 2.29 |
1730 | 8939 | 7.851228 | TGTAGAGATTTCACTATGAACCACAT | 58.149 | 34.615 | 0.00 | 0.00 | 35.89 | 3.21 |
1731 | 8940 | 7.239763 | TGTAGAGATTTCACTATGAACCACA | 57.760 | 36.000 | 0.00 | 0.00 | 35.89 | 4.17 |
1732 | 8941 | 8.547967 | TTTGTAGAGATTTCACTATGAACCAC | 57.452 | 34.615 | 0.00 | 0.00 | 35.89 | 4.16 |
1733 | 8942 | 8.593679 | TCTTTGTAGAGATTTCACTATGAACCA | 58.406 | 33.333 | 0.00 | 0.00 | 35.89 | 3.67 |
1734 | 8943 | 8.874816 | GTCTTTGTAGAGATTTCACTATGAACC | 58.125 | 37.037 | 0.00 | 0.00 | 35.89 | 3.62 |
1735 | 8944 | 9.646427 | AGTCTTTGTAGAGATTTCACTATGAAC | 57.354 | 33.333 | 0.00 | 0.00 | 35.89 | 3.18 |
1753 | 8962 | 9.379791 | CCTCCGTTTCTAAATATAAGTCTTTGT | 57.620 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
1754 | 8963 | 8.827677 | CCCTCCGTTTCTAAATATAAGTCTTTG | 58.172 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
1755 | 8964 | 8.765517 | TCCCTCCGTTTCTAAATATAAGTCTTT | 58.234 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1756 | 8965 | 8.315220 | TCCCTCCGTTTCTAAATATAAGTCTT | 57.685 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
1757 | 8966 | 7.564292 | ACTCCCTCCGTTTCTAAATATAAGTCT | 59.436 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
1758 | 8967 | 7.724287 | ACTCCCTCCGTTTCTAAATATAAGTC | 58.276 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
1759 | 8968 | 7.672122 | ACTCCCTCCGTTTCTAAATATAAGT | 57.328 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1760 | 8969 | 9.857957 | GATACTCCCTCCGTTTCTAAATATAAG | 57.142 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
1761 | 8970 | 9.597681 | AGATACTCCCTCCGTTTCTAAATATAA | 57.402 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
1762 | 8971 | 9.240734 | GAGATACTCCCTCCGTTTCTAAATATA | 57.759 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
1763 | 8972 | 7.951245 | AGAGATACTCCCTCCGTTTCTAAATAT | 59.049 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
1764 | 8973 | 7.296098 | AGAGATACTCCCTCCGTTTCTAAATA | 58.704 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
1765 | 8974 | 6.137559 | AGAGATACTCCCTCCGTTTCTAAAT | 58.862 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1766 | 8975 | 5.516984 | AGAGATACTCCCTCCGTTTCTAAA | 58.483 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
1767 | 8976 | 5.126699 | AGAGATACTCCCTCCGTTTCTAA | 57.873 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
1768 | 8977 | 4.792513 | AGAGATACTCCCTCCGTTTCTA | 57.207 | 45.455 | 0.00 | 0.00 | 0.00 | 2.10 |
1769 | 8978 | 3.673543 | AGAGATACTCCCTCCGTTTCT | 57.326 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
1770 | 8979 | 4.739587 | AAAGAGATACTCCCTCCGTTTC | 57.260 | 45.455 | 0.00 | 0.00 | 0.00 | 2.78 |
1771 | 8980 | 4.323562 | CCAAAAGAGATACTCCCTCCGTTT | 60.324 | 45.833 | 0.00 | 0.00 | 0.00 | 3.60 |
1772 | 8981 | 3.197983 | CCAAAAGAGATACTCCCTCCGTT | 59.802 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
1773 | 8982 | 2.766828 | CCAAAAGAGATACTCCCTCCGT | 59.233 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1774 | 8983 | 3.031736 | TCCAAAAGAGATACTCCCTCCG | 58.968 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1775 | 8984 | 5.186942 | GTTTCCAAAAGAGATACTCCCTCC | 58.813 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1776 | 8985 | 5.805728 | TGTTTCCAAAAGAGATACTCCCTC | 58.194 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1777 | 8986 | 5.548056 | TCTGTTTCCAAAAGAGATACTCCCT | 59.452 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1778 | 8987 | 5.644206 | GTCTGTTTCCAAAAGAGATACTCCC | 59.356 | 44.000 | 3.06 | 0.00 | 0.00 | 4.30 |
1779 | 8988 | 5.348997 | CGTCTGTTTCCAAAAGAGATACTCC | 59.651 | 44.000 | 3.06 | 0.00 | 0.00 | 3.85 |
1780 | 8989 | 6.157211 | TCGTCTGTTTCCAAAAGAGATACTC | 58.843 | 40.000 | 3.06 | 0.00 | 0.00 | 2.59 |
1781 | 8990 | 6.097915 | TCGTCTGTTTCCAAAAGAGATACT | 57.902 | 37.500 | 3.06 | 0.00 | 0.00 | 2.12 |
1782 | 8991 | 6.202188 | TGTTCGTCTGTTTCCAAAAGAGATAC | 59.798 | 38.462 | 3.06 | 3.74 | 0.00 | 2.24 |
1783 | 8992 | 6.202188 | GTGTTCGTCTGTTTCCAAAAGAGATA | 59.798 | 38.462 | 3.06 | 0.00 | 0.00 | 1.98 |
1784 | 8993 | 5.007724 | GTGTTCGTCTGTTTCCAAAAGAGAT | 59.992 | 40.000 | 3.06 | 0.00 | 0.00 | 2.75 |
1785 | 8994 | 4.331717 | GTGTTCGTCTGTTTCCAAAAGAGA | 59.668 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
1786 | 8995 | 4.094294 | TGTGTTCGTCTGTTTCCAAAAGAG | 59.906 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
1787 | 8996 | 4.004314 | TGTGTTCGTCTGTTTCCAAAAGA | 58.996 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
1788 | 8997 | 4.095610 | GTGTGTTCGTCTGTTTCCAAAAG | 58.904 | 43.478 | 0.00 | 0.00 | 0.00 | 2.27 |
1876 | 9666 | 7.151976 | TCAATCTTACAACATCAAGTTCGAGA | 58.848 | 34.615 | 0.00 | 0.00 | 38.74 | 4.04 |
1877 | 9667 | 7.116948 | ACTCAATCTTACAACATCAAGTTCGAG | 59.883 | 37.037 | 0.00 | 0.00 | 38.74 | 4.04 |
1942 | 9732 | 2.196595 | TGTAGCTTGTAGGCCCTTCAT | 58.803 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
1954 | 9744 | 1.806542 | AGCATTGTCGGTTGTAGCTTG | 59.193 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
2027 | 9851 | 4.646960 | TGATTACGACATGCAAATGAACG | 58.353 | 39.130 | 0.00 | 0.33 | 0.00 | 3.95 |
2081 | 9905 | 2.202797 | CAGCCGACGATCCCACAG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 3.66 |
2378 | 10202 | 9.660180 | ATTCCTCTTGAAGAAAACTACTATGAC | 57.340 | 33.333 | 0.00 | 0.00 | 36.14 | 3.06 |
2382 | 10206 | 8.582437 | TCGAATTCCTCTTGAAGAAAACTACTA | 58.418 | 33.333 | 0.00 | 0.00 | 36.14 | 1.82 |
2397 | 10221 | 1.471119 | TACGGCACTCGAATTCCTCT | 58.529 | 50.000 | 0.00 | 0.00 | 42.43 | 3.69 |
2413 | 10238 | 6.291322 | CGCATTTCTCACTTCTCTGTATTACG | 60.291 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
2419 | 10244 | 3.667497 | TCGCATTTCTCACTTCTCTGT | 57.333 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
2437 | 10262 | 6.908870 | TTCAAGGTAAGTCATTGATCATCG | 57.091 | 37.500 | 0.00 | 0.00 | 44.42 | 3.84 |
2438 | 10263 | 7.121168 | TGGTTTCAAGGTAAGTCATTGATCATC | 59.879 | 37.037 | 0.00 | 0.00 | 44.42 | 2.92 |
2439 | 10264 | 6.947733 | TGGTTTCAAGGTAAGTCATTGATCAT | 59.052 | 34.615 | 0.00 | 0.00 | 44.42 | 2.45 |
2440 | 10265 | 6.303054 | TGGTTTCAAGGTAAGTCATTGATCA | 58.697 | 36.000 | 0.00 | 0.00 | 44.42 | 2.92 |
2441 | 10266 | 6.655003 | TCTGGTTTCAAGGTAAGTCATTGATC | 59.345 | 38.462 | 0.00 | 0.00 | 44.42 | 2.92 |
2442 | 10267 | 6.542821 | TCTGGTTTCAAGGTAAGTCATTGAT | 58.457 | 36.000 | 0.00 | 0.00 | 44.42 | 2.57 |
2443 | 10268 | 5.935945 | TCTGGTTTCAAGGTAAGTCATTGA | 58.064 | 37.500 | 0.00 | 0.00 | 43.58 | 2.57 |
2444 | 10269 | 5.997746 | TCTCTGGTTTCAAGGTAAGTCATTG | 59.002 | 40.000 | 0.00 | 0.00 | 38.91 | 2.82 |
2445 | 10270 | 6.187727 | TCTCTGGTTTCAAGGTAAGTCATT | 57.812 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2446 | 10271 | 5.825593 | TCTCTGGTTTCAAGGTAAGTCAT | 57.174 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.