Multiple sequence alignment - TraesCS2B01G405100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G405100 chr2B 100.000 2572 0 0 1 2572 573197104 573199675 0.000000e+00 4750.0
1 TraesCS2B01G405100 chr2B 91.307 1461 80 25 32 1474 573185656 573187087 0.000000e+00 1951.0
2 TraesCS2B01G405100 chr2B 91.163 894 50 13 591 1474 573183457 573184331 0.000000e+00 1186.0
3 TraesCS2B01G405100 chr2B 91.883 308 15 5 1784 2086 573187337 573187639 3.060000e-114 422.0
4 TraesCS2B01G405100 chr2B 91.608 286 19 4 890 1173 573182279 573182561 8.630000e-105 390.0
5 TraesCS2B01G405100 chr2B 95.152 165 8 0 1622 1786 756177183 756177019 7.060000e-66 261.0
6 TraesCS2B01G405100 chr2B 93.976 166 10 0 1621 1786 479990257 479990092 4.250000e-63 252.0
7 TraesCS2B01G405100 chr2B 93.976 166 10 0 1620 1785 711137151 711136986 4.250000e-63 252.0
8 TraesCS2B01G405100 chr2B 89.922 129 13 0 2309 2437 573187643 573187771 1.580000e-37 167.0
9 TraesCS2B01G405100 chr2B 88.889 117 9 3 2453 2569 573189922 573190034 9.590000e-30 141.0
10 TraesCS2B01G405100 chr2B 75.799 219 38 12 405 613 52862369 52862582 2.110000e-16 97.1
11 TraesCS2B01G405100 chr2B 86.747 83 6 5 53 131 186379308 186379389 1.270000e-13 87.9
12 TraesCS2B01G405100 chr2A 92.766 788 36 7 1784 2569 633223614 633224382 0.000000e+00 1120.0
13 TraesCS2B01G405100 chr2A 93.625 753 32 4 1822 2572 633229236 633229974 0.000000e+00 1110.0
14 TraesCS2B01G405100 chr2A 91.015 601 34 9 881 1474 633222777 633223364 0.000000e+00 793.0
15 TraesCS2B01G405100 chr2A 84.428 822 89 27 1 805 633227683 633228482 0.000000e+00 773.0
16 TraesCS2B01G405100 chr2A 95.484 310 14 0 1165 1474 633228727 633229036 1.780000e-136 496.0
17 TraesCS2B01G405100 chr2A 89.756 205 15 4 872 1075 633228502 633228701 9.130000e-65 257.0
18 TraesCS2B01G405100 chr2A 90.714 140 12 1 1481 1620 633229072 633229210 4.370000e-43 185.0
19 TraesCS2B01G405100 chr2D 89.314 758 57 14 737 1474 489637190 489637943 0.000000e+00 929.0
20 TraesCS2B01G405100 chr2D 94.595 555 19 4 2019 2572 489638374 489638918 0.000000e+00 848.0
21 TraesCS2B01G405100 chr2D 91.987 599 37 8 881 1474 489593362 489593954 0.000000e+00 830.0
22 TraesCS2B01G405100 chr2D 87.482 703 38 19 1869 2569 489594882 489595536 0.000000e+00 765.0
23 TraesCS2B01G405100 chr2D 91.081 370 20 2 1105 1474 489574390 489574746 2.970000e-134 488.0
24 TraesCS2B01G405100 chr2D 91.961 311 13 5 1784 2090 489574936 489575238 2.370000e-115 425.0
25 TraesCS2B01G405100 chr2D 86.810 326 30 3 325 648 489636508 489636822 4.070000e-93 351.0
26 TraesCS2B01G405100 chr2D 84.810 237 18 4 2337 2572 489590629 489590848 3.330000e-54 222.0
27 TraesCS2B01G405100 chr2D 87.766 188 15 6 890 1075 489574230 489574411 2.000000e-51 213.0
28 TraesCS2B01G405100 chr2D 96.471 85 0 2 1784 1866 489594217 489594300 1.240000e-28 137.0
29 TraesCS2B01G405100 chr2D 77.727 220 39 8 407 617 25179106 25178888 2.690000e-25 126.0
30 TraesCS2B01G405100 chr2D 86.747 83 6 5 53 131 131648338 131648257 1.270000e-13 87.9
31 TraesCS2B01G405100 chr2D 81.651 109 12 6 20 124 37220029 37219925 1.640000e-12 84.2
32 TraesCS2B01G405100 chr1D 95.122 164 8 0 1623 1786 311986774 311986611 2.540000e-65 259.0
33 TraesCS2B01G405100 chr1D 94.578 166 9 0 1621 1786 450202217 450202052 9.130000e-65 257.0
34 TraesCS2B01G405100 chr7D 94.545 165 9 0 1621 1785 235502570 235502406 3.280000e-64 255.0
35 TraesCS2B01G405100 chr3D 92.486 173 12 1 1617 1788 569577335 569577163 1.980000e-61 246.0
36 TraesCS2B01G405100 chr3B 91.620 179 12 2 1608 1785 684066034 684066210 7.110000e-61 244.0
37 TraesCS2B01G405100 chr3B 90.164 183 18 0 1620 1802 812681179 812680997 3.310000e-59 239.0
38 TraesCS2B01G405100 chr3B 76.824 233 35 12 404 631 140396270 140396488 2.090000e-21 113.0
39 TraesCS2B01G405100 chr3B 79.091 110 20 3 38 145 717661657 717661549 3.550000e-09 73.1
40 TraesCS2B01G405100 chr4A 81.865 193 24 9 442 631 2263707 2263891 4.430000e-33 152.0
41 TraesCS2B01G405100 chr4A 80.114 176 27 8 448 620 2265531 2265701 9.660000e-25 124.0
42 TraesCS2B01G405100 chr5B 80.500 200 28 10 416 612 423233752 423233561 2.670000e-30 143.0
43 TraesCS2B01G405100 chr5B 78.151 119 19 6 20 135 681074020 681073906 4.590000e-08 69.4
44 TraesCS2B01G405100 chr4B 85.000 120 14 4 405 522 68982606 68982489 4.500000e-23 119.0
45 TraesCS2B01G405100 chr6B 91.667 72 5 1 59 129 617343571 617343642 5.860000e-17 99.0
46 TraesCS2B01G405100 chr6B 80.153 131 20 6 18 145 205043179 205043306 2.720000e-15 93.5
47 TraesCS2B01G405100 chr3A 86.250 80 7 4 55 132 36131691 36131768 1.640000e-12 84.2
48 TraesCS2B01G405100 chr6D 91.228 57 4 1 775 830 25789468 25789412 2.740000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G405100 chr2B 573197104 573199675 2571 False 4750.000000 4750 100.000000 1 2572 1 chr2B.!!$F3 2571
1 TraesCS2B01G405100 chr2B 573182279 573190034 7755 False 709.500000 1951 90.795333 32 2569 6 chr2B.!!$F4 2537
2 TraesCS2B01G405100 chr2A 633222777 633229974 7197 False 676.285714 1120 91.112571 1 2572 7 chr2A.!!$F1 2571
3 TraesCS2B01G405100 chr2D 489636508 489638918 2410 False 709.333333 929 90.239667 325 2572 3 chr2D.!!$F3 2247
4 TraesCS2B01G405100 chr2D 489590629 489595536 4907 False 488.500000 830 90.187500 881 2572 4 chr2D.!!$F2 1691
5 TraesCS2B01G405100 chr2D 489574230 489575238 1008 False 375.333333 488 90.269333 890 2090 3 chr2D.!!$F1 1200


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 7877 1.219664 CCGCCAAGAACCGATACCA 59.78 57.895 0.0 0.0 0.0 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 10221 1.471119 TACGGCACTCGAATTCCTCT 58.529 50.0 0.0 0.0 42.43 3.69 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
216 6661 7.763985 AGGCAAAACACCTTTTTATATACATGC 59.236 33.333 0.00 0.00 31.87 4.06
343 6796 7.383029 ACGTTTAGCCTTTTTAAAATACTTGGC 59.617 33.333 8.89 8.89 39.40 4.52
357 6810 7.961325 AAATACTTGGCGAACATTTTTCATT 57.039 28.000 0.00 0.00 0.00 2.57
631 7087 7.697352 TCAAATGTTTATGCAGAGTGTTTTG 57.303 32.000 0.00 0.00 0.00 2.44
636 7092 7.979115 TGTTTATGCAGAGTGTTTTGTTAAC 57.021 32.000 0.00 0.00 0.00 2.01
638 7094 7.913297 TGTTTATGCAGAGTGTTTTGTTAACTC 59.087 33.333 7.22 0.00 40.53 3.01
664 7120 3.558033 TGGTGGTAGGAAACTTTTGTCC 58.442 45.455 0.00 0.00 43.67 4.02
668 7124 6.272792 TGGTGGTAGGAAACTTTTGTCCTATA 59.727 38.462 2.90 0.00 45.89 1.31
784 7242 4.379243 CGGCCTGGTCTCGTGCTT 62.379 66.667 0.00 0.00 0.00 3.91
807 7265 4.452733 GCGAGGCTGCCCTACGTT 62.453 66.667 23.48 4.25 43.12 3.99
809 7267 1.810030 CGAGGCTGCCCTACGTTTC 60.810 63.158 16.57 3.23 43.12 2.78
857 7315 2.152016 GTAAGGCGCCTCAAGAACTTT 58.848 47.619 32.93 13.62 0.00 2.66
921 7848 2.496111 AGTTTCAGACTCTCGTCGACT 58.504 47.619 14.70 0.00 44.93 4.18
950 7877 1.219664 CCGCCAAGAACCGATACCA 59.780 57.895 0.00 0.00 0.00 3.25
976 7913 4.770531 CCGAGGTTCCATGGTATATACAGA 59.229 45.833 12.58 1.04 0.00 3.41
987 7924 4.278919 TGGTATATACAGAACCGATCGCAA 59.721 41.667 10.32 0.00 35.98 4.85
1095 8033 2.890474 CCGATCGGCGTTCCCTTG 60.890 66.667 23.37 0.00 38.67 3.61
1096 8034 2.890474 CGATCGGCGTTCCCTTGG 60.890 66.667 7.38 0.00 34.64 3.61
1097 8035 2.267961 GATCGGCGTTCCCTTGGT 59.732 61.111 6.85 0.00 0.00 3.67
1098 8036 2.046314 ATCGGCGTTCCCTTGGTG 60.046 61.111 6.85 0.00 0.00 4.17
1102 8040 4.025401 GCGTTCCCTTGGTGCGTG 62.025 66.667 0.00 0.00 0.00 5.34
1103 8041 4.025401 CGTTCCCTTGGTGCGTGC 62.025 66.667 0.00 0.00 0.00 5.34
1104 8042 4.025401 GTTCCCTTGGTGCGTGCG 62.025 66.667 0.00 0.00 0.00 5.34
1179 8173 3.891586 GACGACGACGCAGAAGCCA 62.892 63.158 7.30 0.00 43.96 4.75
1478 8472 2.496817 GCAGTAGCCCTCGACAGG 59.503 66.667 0.00 0.00 39.98 4.00
1509 8603 7.295322 TGATGGACTCTAAGAGATGTATTGG 57.705 40.000 0.00 0.00 33.32 3.16
1512 8606 5.299531 TGGACTCTAAGAGATGTATTGGTCG 59.700 44.000 0.00 0.00 33.32 4.79
1531 8736 6.761312 TGGTCGGAGAAAAGTGTAAAGATTA 58.239 36.000 0.00 0.00 39.69 1.75
1543 8748 9.515226 AAAGTGTAAAGATTATACTTCTTGCCA 57.485 29.630 11.13 0.00 33.79 4.92
1548 8753 9.601217 GTAAAGATTATACTTCTTGCCAAGAGA 57.399 33.333 7.29 0.00 39.03 3.10
1587 8796 8.443953 AAAGATAGATAGCAATCCAGTTGAAC 57.556 34.615 0.00 0.00 40.37 3.18
1616 8825 6.658816 TCTTCCACAAGTTGCACATACATAAT 59.341 34.615 1.81 0.00 0.00 1.28
1620 8829 7.176515 TCCACAAGTTGCACATACATAATCTTT 59.823 33.333 1.81 0.00 0.00 2.52
1622 8831 7.809331 CACAAGTTGCACATACATAATCTTTGT 59.191 33.333 1.81 0.00 0.00 2.83
1623 8832 9.008965 ACAAGTTGCACATACATAATCTTTGTA 57.991 29.630 1.81 0.00 34.29 2.41
1624 8833 9.277565 CAAGTTGCACATACATAATCTTTGTAC 57.722 33.333 0.00 0.00 32.70 2.90
1625 8834 8.792830 AGTTGCACATACATAATCTTTGTACT 57.207 30.769 0.00 0.00 32.70 2.73
1626 8835 8.883731 AGTTGCACATACATAATCTTTGTACTC 58.116 33.333 0.00 0.00 32.70 2.59
1628 8837 6.765989 TGCACATACATAATCTTTGTACTCCC 59.234 38.462 0.00 0.00 32.70 4.30
1629 8838 6.992715 GCACATACATAATCTTTGTACTCCCT 59.007 38.462 0.00 0.00 32.70 4.20
1630 8839 7.171678 GCACATACATAATCTTTGTACTCCCTC 59.828 40.741 0.00 0.00 32.70 4.30
1631 8840 8.424918 CACATACATAATCTTTGTACTCCCTCT 58.575 37.037 0.00 0.00 32.70 3.69
1632 8841 8.424918 ACATACATAATCTTTGTACTCCCTCTG 58.575 37.037 0.00 0.00 32.70 3.35
1633 8842 6.875972 ACATAATCTTTGTACTCCCTCTGT 57.124 37.500 0.00 0.00 0.00 3.41
1634 8843 7.259088 ACATAATCTTTGTACTCCCTCTGTT 57.741 36.000 0.00 0.00 0.00 3.16
1635 8844 7.331791 ACATAATCTTTGTACTCCCTCTGTTC 58.668 38.462 0.00 0.00 0.00 3.18
1636 8845 4.828072 ATCTTTGTACTCCCTCTGTTCC 57.172 45.455 0.00 0.00 0.00 3.62
1637 8846 3.858135 TCTTTGTACTCCCTCTGTTCCT 58.142 45.455 0.00 0.00 0.00 3.36
1638 8847 5.006896 TCTTTGTACTCCCTCTGTTCCTA 57.993 43.478 0.00 0.00 0.00 2.94
1639 8848 5.399991 TCTTTGTACTCCCTCTGTTCCTAA 58.600 41.667 0.00 0.00 0.00 2.69
1640 8849 5.842328 TCTTTGTACTCCCTCTGTTCCTAAA 59.158 40.000 0.00 0.00 0.00 1.85
1641 8850 6.500751 TCTTTGTACTCCCTCTGTTCCTAAAT 59.499 38.462 0.00 0.00 0.00 1.40
1642 8851 7.676893 TCTTTGTACTCCCTCTGTTCCTAAATA 59.323 37.037 0.00 0.00 0.00 1.40
1643 8852 7.989947 TTGTACTCCCTCTGTTCCTAAATAT 57.010 36.000 0.00 0.00 0.00 1.28
1644 8853 9.496710 TTTGTACTCCCTCTGTTCCTAAATATA 57.503 33.333 0.00 0.00 0.00 0.86
1645 8854 9.496710 TTGTACTCCCTCTGTTCCTAAATATAA 57.503 33.333 0.00 0.00 0.00 0.98
1646 8855 9.144298 TGTACTCCCTCTGTTCCTAAATATAAG 57.856 37.037 0.00 0.00 0.00 1.73
1647 8856 9.145442 GTACTCCCTCTGTTCCTAAATATAAGT 57.855 37.037 0.00 0.00 0.00 2.24
1648 8857 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
1649 8858 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
1650 8859 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
1651 8860 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
1652 8861 9.331282 CCCTCTGTTCCTAAATATAAGTCTTTG 57.669 37.037 0.00 0.00 0.00 2.77
1653 8862 9.892130 CCTCTGTTCCTAAATATAAGTCTTTGT 57.108 33.333 0.00 0.00 0.00 2.83
1668 8877 6.672266 AGTCTTTGTAGAGATTTCACCAGA 57.328 37.500 0.00 0.00 0.00 3.86
1669 8878 7.251321 AGTCTTTGTAGAGATTTCACCAGAT 57.749 36.000 0.00 0.00 0.00 2.90
1670 8879 8.367660 AGTCTTTGTAGAGATTTCACCAGATA 57.632 34.615 0.00 0.00 0.00 1.98
1671 8880 8.474025 AGTCTTTGTAGAGATTTCACCAGATAG 58.526 37.037 0.00 0.00 0.00 2.08
1672 8881 8.470805 GTCTTTGTAGAGATTTCACCAGATAGA 58.529 37.037 0.00 0.00 0.00 1.98
1673 8882 8.470805 TCTTTGTAGAGATTTCACCAGATAGAC 58.529 37.037 0.00 0.00 0.00 2.59
1674 8883 7.962995 TTGTAGAGATTTCACCAGATAGACT 57.037 36.000 0.00 0.00 0.00 3.24
1675 8884 9.475620 TTTGTAGAGATTTCACCAGATAGACTA 57.524 33.333 0.00 0.00 0.00 2.59
1676 8885 8.453238 TGTAGAGATTTCACCAGATAGACTAC 57.547 38.462 0.00 0.00 0.00 2.73
1677 8886 8.053355 TGTAGAGATTTCACCAGATAGACTACA 58.947 37.037 0.00 0.00 34.91 2.74
1678 8887 9.073475 GTAGAGATTTCACCAGATAGACTACAT 57.927 37.037 0.00 0.00 0.00 2.29
1680 8889 9.073475 AGAGATTTCACCAGATAGACTACATAC 57.927 37.037 0.00 0.00 0.00 2.39
1681 8890 7.877003 AGATTTCACCAGATAGACTACATACG 58.123 38.462 0.00 0.00 0.00 3.06
1682 8891 7.720074 AGATTTCACCAGATAGACTACATACGA 59.280 37.037 0.00 0.00 0.00 3.43
1683 8892 7.634671 TTTCACCAGATAGACTACATACGAA 57.365 36.000 0.00 0.00 0.00 3.85
1684 8893 6.862711 TCACCAGATAGACTACATACGAAG 57.137 41.667 0.00 0.00 0.00 3.79
1685 8894 5.238868 TCACCAGATAGACTACATACGAAGC 59.761 44.000 0.00 0.00 0.00 3.86
1686 8895 5.008712 CACCAGATAGACTACATACGAAGCA 59.991 44.000 0.00 0.00 0.00 3.91
1687 8896 5.593095 ACCAGATAGACTACATACGAAGCAA 59.407 40.000 0.00 0.00 0.00 3.91
1688 8897 6.096423 ACCAGATAGACTACATACGAAGCAAA 59.904 38.462 0.00 0.00 0.00 3.68
1689 8898 6.978659 CCAGATAGACTACATACGAAGCAAAA 59.021 38.462 0.00 0.00 0.00 2.44
1690 8899 7.653713 CCAGATAGACTACATACGAAGCAAAAT 59.346 37.037 0.00 0.00 0.00 1.82
1691 8900 8.483218 CAGATAGACTACATACGAAGCAAAATG 58.517 37.037 0.00 0.00 0.00 2.32
1692 8901 8.414003 AGATAGACTACATACGAAGCAAAATGA 58.586 33.333 0.00 0.00 0.00 2.57
1693 8902 9.197694 GATAGACTACATACGAAGCAAAATGAT 57.802 33.333 0.00 0.00 0.00 2.45
1694 8903 7.849804 AGACTACATACGAAGCAAAATGATT 57.150 32.000 0.00 0.00 0.00 2.57
1695 8904 7.688372 AGACTACATACGAAGCAAAATGATTG 58.312 34.615 0.00 0.00 0.00 2.67
1696 8905 7.549134 AGACTACATACGAAGCAAAATGATTGA 59.451 33.333 0.00 0.00 0.00 2.57
1697 8906 8.039603 ACTACATACGAAGCAAAATGATTGAA 57.960 30.769 0.00 0.00 0.00 2.69
1698 8907 8.677300 ACTACATACGAAGCAAAATGATTGAAT 58.323 29.630 0.00 0.00 0.00 2.57
1699 8908 7.975866 ACATACGAAGCAAAATGATTGAATC 57.024 32.000 0.00 0.00 0.00 2.52
1700 8909 7.765307 ACATACGAAGCAAAATGATTGAATCT 58.235 30.769 6.73 0.00 0.00 2.40
1701 8910 8.892723 ACATACGAAGCAAAATGATTGAATCTA 58.107 29.630 6.73 0.00 0.00 1.98
1702 8911 9.720667 CATACGAAGCAAAATGATTGAATCTAA 57.279 29.630 6.73 0.00 0.00 2.10
1704 8913 8.452989 ACGAAGCAAAATGATTGAATCTAAAC 57.547 30.769 6.73 0.00 0.00 2.01
1705 8914 8.299570 ACGAAGCAAAATGATTGAATCTAAACT 58.700 29.630 6.73 0.00 0.00 2.66
1706 8915 9.132521 CGAAGCAAAATGATTGAATCTAAACTT 57.867 29.630 6.73 3.21 0.00 2.66
1716 8925 9.638239 TGATTGAATCTAAACTTAAAATGCACC 57.362 29.630 6.73 0.00 0.00 5.01
1717 8926 9.860898 GATTGAATCTAAACTTAAAATGCACCT 57.139 29.630 0.00 0.00 0.00 4.00
1728 8937 8.547967 ACTTAAAATGCACCTATATACATCCG 57.452 34.615 0.00 0.00 0.00 4.18
1729 8938 8.154856 ACTTAAAATGCACCTATATACATCCGT 58.845 33.333 0.00 0.00 0.00 4.69
1730 8939 9.647797 CTTAAAATGCACCTATATACATCCGTA 57.352 33.333 0.00 0.00 0.00 4.02
1732 8941 8.492673 AAAATGCACCTATATACATCCGTATG 57.507 34.615 0.00 0.00 38.79 2.39
1734 8943 5.961272 TGCACCTATATACATCCGTATGTG 58.039 41.667 3.56 0.00 45.99 3.21
1735 8944 5.105513 TGCACCTATATACATCCGTATGTGG 60.106 44.000 3.56 0.00 45.99 4.17
1736 8945 5.105473 GCACCTATATACATCCGTATGTGGT 60.105 44.000 3.56 0.00 45.99 4.16
1737 8946 6.573680 GCACCTATATACATCCGTATGTGGTT 60.574 42.308 3.56 0.00 45.99 3.67
1738 8947 7.033791 CACCTATATACATCCGTATGTGGTTC 58.966 42.308 3.56 0.00 45.99 3.62
1739 8948 6.722590 ACCTATATACATCCGTATGTGGTTCA 59.277 38.462 3.56 0.00 45.99 3.18
1740 8949 7.399191 ACCTATATACATCCGTATGTGGTTCAT 59.601 37.037 3.56 0.00 45.99 2.57
1741 8950 8.909923 CCTATATACATCCGTATGTGGTTCATA 58.090 37.037 3.56 0.00 45.99 2.15
1742 8951 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
1743 8952 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
1744 8953 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
1745 8954 4.404394 ACATCCGTATGTGGTTCATAGTGA 59.596 41.667 0.00 0.00 44.79 3.41
1746 8955 5.105106 ACATCCGTATGTGGTTCATAGTGAA 60.105 40.000 0.00 0.00 44.79 3.18
1747 8956 5.408880 TCCGTATGTGGTTCATAGTGAAA 57.591 39.130 0.00 0.00 38.22 2.69
1748 8957 5.984725 TCCGTATGTGGTTCATAGTGAAAT 58.015 37.500 0.00 0.00 38.22 2.17
1749 8958 6.046593 TCCGTATGTGGTTCATAGTGAAATC 58.953 40.000 0.00 0.00 38.22 2.17
1750 8959 6.049149 CCGTATGTGGTTCATAGTGAAATCT 58.951 40.000 0.00 0.00 38.22 2.40
1751 8960 6.201044 CCGTATGTGGTTCATAGTGAAATCTC 59.799 42.308 0.00 0.00 38.22 2.75
1752 8961 6.980978 CGTATGTGGTTCATAGTGAAATCTCT 59.019 38.462 0.00 0.00 38.22 3.10
1753 8962 8.135529 CGTATGTGGTTCATAGTGAAATCTCTA 58.864 37.037 0.00 0.00 38.22 2.43
1754 8963 9.250624 GTATGTGGTTCATAGTGAAATCTCTAC 57.749 37.037 0.00 0.00 38.22 2.59
1755 8964 7.239763 TGTGGTTCATAGTGAAATCTCTACA 57.760 36.000 0.00 0.00 38.22 2.74
1756 8965 7.676004 TGTGGTTCATAGTGAAATCTCTACAA 58.324 34.615 0.00 0.00 38.22 2.41
1757 8966 8.154203 TGTGGTTCATAGTGAAATCTCTACAAA 58.846 33.333 0.00 0.00 38.22 2.83
1758 8967 8.660373 GTGGTTCATAGTGAAATCTCTACAAAG 58.340 37.037 0.00 0.00 38.22 2.77
1759 8968 8.593679 TGGTTCATAGTGAAATCTCTACAAAGA 58.406 33.333 0.00 0.00 38.22 2.52
1760 8969 8.874816 GGTTCATAGTGAAATCTCTACAAAGAC 58.125 37.037 0.00 0.00 38.22 3.01
1761 8970 9.646427 GTTCATAGTGAAATCTCTACAAAGACT 57.354 33.333 0.00 0.00 38.22 3.24
1779 8988 9.379791 ACAAAGACTTATATTTAGAAACGGAGG 57.620 33.333 0.00 0.00 0.00 4.30
1780 8989 8.827677 CAAAGACTTATATTTAGAAACGGAGGG 58.172 37.037 0.00 0.00 0.00 4.30
1781 8990 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
1782 8991 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
1783 8992 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
1784 8993 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
1785 8994 9.377238 ACTTATATTTAGAAACGGAGGGAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
1786 8995 9.857957 CTTATATTTAGAAACGGAGGGAGTATC 57.142 37.037 0.00 0.00 0.00 2.24
1787 8996 9.597681 TTATATTTAGAAACGGAGGGAGTATCT 57.402 33.333 0.00 0.00 33.73 1.98
1788 8997 5.848833 TTTAGAAACGGAGGGAGTATCTC 57.151 43.478 0.00 0.00 33.92 2.75
1876 9666 3.445008 TCAGTAGACAGAGCTTCCCAAT 58.555 45.455 0.00 0.00 0.00 3.16
1877 9667 3.449018 TCAGTAGACAGAGCTTCCCAATC 59.551 47.826 0.00 0.00 0.00 2.67
1954 9744 3.826729 AGAAAACACAATGAAGGGCCTAC 59.173 43.478 6.41 0.00 0.00 3.18
1970 9767 2.868839 GCCTACAAGCTACAACCGACAA 60.869 50.000 0.00 0.00 0.00 3.18
1971 9768 3.596214 CCTACAAGCTACAACCGACAAT 58.404 45.455 0.00 0.00 0.00 2.71
1972 9769 3.370978 CCTACAAGCTACAACCGACAATG 59.629 47.826 0.00 0.00 0.00 2.82
1973 9770 1.535462 ACAAGCTACAACCGACAATGC 59.465 47.619 0.00 0.00 0.00 3.56
1974 9771 1.806542 CAAGCTACAACCGACAATGCT 59.193 47.619 0.00 0.00 0.00 3.79
2027 9851 1.001706 GGAACAACGAAAACCTCCTGC 60.002 52.381 0.00 0.00 0.00 4.85
2081 9905 0.969894 ACGGCCATATCTCCAGCTAC 59.030 55.000 2.24 0.00 0.00 3.58
2378 10202 1.470098 GCAACTTCCTGGCACTACATG 59.530 52.381 0.00 0.00 0.00 3.21
2382 10206 2.573462 ACTTCCTGGCACTACATGTCAT 59.427 45.455 0.00 0.00 43.62 3.06
2413 10238 2.386661 TCAAGAGGAATTCGAGTGCC 57.613 50.000 0.00 0.00 0.00 5.01
2419 10244 3.635373 AGAGGAATTCGAGTGCCGTAATA 59.365 43.478 0.00 0.00 39.75 0.98
2437 10262 6.019479 CCGTAATACAGAGAAGTGAGAAATGC 60.019 42.308 0.00 0.00 0.00 3.56
2438 10263 6.291322 CGTAATACAGAGAAGTGAGAAATGCG 60.291 42.308 0.00 0.00 0.00 4.73
2439 10264 3.667497 ACAGAGAAGTGAGAAATGCGA 57.333 42.857 0.00 0.00 0.00 5.10
2440 10265 4.199432 ACAGAGAAGTGAGAAATGCGAT 57.801 40.909 0.00 0.00 0.00 4.58
2441 10266 3.931468 ACAGAGAAGTGAGAAATGCGATG 59.069 43.478 0.00 0.00 0.00 3.84
2442 10267 4.179298 CAGAGAAGTGAGAAATGCGATGA 58.821 43.478 0.00 0.00 0.00 2.92
2443 10268 4.809958 CAGAGAAGTGAGAAATGCGATGAT 59.190 41.667 0.00 0.00 0.00 2.45
2444 10269 5.049167 AGAGAAGTGAGAAATGCGATGATC 58.951 41.667 0.00 0.00 0.00 2.92
2445 10270 4.763073 AGAAGTGAGAAATGCGATGATCA 58.237 39.130 0.00 0.00 0.00 2.92
2446 10271 5.181009 AGAAGTGAGAAATGCGATGATCAA 58.819 37.500 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
291 6741 9.961264 TGTATAAAAATATTCCTGGTGTGTACA 57.039 29.630 0.00 0.00 0.00 2.90
631 7087 5.416271 TCCTACCACCAATGAGAGTTAAC 57.584 43.478 0.00 0.00 0.00 2.01
636 7092 4.559862 AGTTTCCTACCACCAATGAGAG 57.440 45.455 0.00 0.00 0.00 3.20
638 7094 5.301805 ACAAAAGTTTCCTACCACCAATGAG 59.698 40.000 0.00 0.00 0.00 2.90
770 7228 0.108898 CTGAGAAGCACGAGACCAGG 60.109 60.000 0.00 0.00 0.00 4.45
772 7230 1.967535 CCTGAGAAGCACGAGACCA 59.032 57.895 0.00 0.00 0.00 4.02
921 7848 3.680620 CTTGGCGGGATTCGGAGCA 62.681 63.158 0.00 0.00 39.69 4.26
950 7877 1.140312 ATACCATGGAACCTCGGCAT 58.860 50.000 21.47 0.00 0.00 4.40
976 7913 2.461110 GCGGTGATTGCGATCGGTT 61.461 57.895 18.30 0.00 34.91 4.44
987 7924 0.889186 GGTTGTGGACTTGCGGTGAT 60.889 55.000 0.00 0.00 0.00 3.06
1078 8016 2.890474 CAAGGGAACGCCGATCGG 60.890 66.667 30.03 30.03 43.86 4.18
1079 8017 2.890474 CCAAGGGAACGCCGATCG 60.890 66.667 8.51 8.51 45.38 3.69
1080 8018 2.106683 CACCAAGGGAACGCCGATC 61.107 63.158 0.00 0.00 33.83 3.69
1081 8019 2.046314 CACCAAGGGAACGCCGAT 60.046 61.111 0.00 0.00 33.83 4.18
1085 8023 4.025401 CACGCACCAAGGGAACGC 62.025 66.667 0.00 0.00 0.00 4.84
1086 8024 4.025401 GCACGCACCAAGGGAACG 62.025 66.667 0.00 0.00 0.00 3.95
1087 8025 4.025401 CGCACGCACCAAGGGAAC 62.025 66.667 0.00 0.00 0.00 3.62
1120 8058 4.969196 CCCCATGGCGTCGATCGG 62.969 72.222 16.41 0.48 40.26 4.18
1124 8062 2.515996 GAAGAACCCCATGGCGTCGA 62.516 60.000 6.09 0.00 33.59 4.20
1474 8468 4.054359 AGAGTCCATCAACTACTCCTGT 57.946 45.455 0.00 0.00 40.42 4.00
1475 8469 5.888724 TCTTAGAGTCCATCAACTACTCCTG 59.111 44.000 0.00 0.00 40.42 3.86
1477 8471 6.123651 TCTCTTAGAGTCCATCAACTACTCC 58.876 44.000 9.25 0.00 40.42 3.85
1478 8472 7.284489 ACATCTCTTAGAGTCCATCAACTACTC 59.716 40.741 9.25 0.00 39.95 2.59
1509 8603 9.583765 AGTATAATCTTTACACTTTTCTCCGAC 57.416 33.333 0.00 0.00 0.00 4.79
1531 8736 6.711277 TGTTACATCTCTTGGCAAGAAGTAT 58.289 36.000 28.27 19.04 37.02 2.12
1587 8796 2.159448 TGTGCAACTTGTGGAAGAAACG 60.159 45.455 0.00 0.00 38.04 3.60
1616 8825 3.858135 AGGAACAGAGGGAGTACAAAGA 58.142 45.455 0.00 0.00 0.00 2.52
1620 8829 9.144298 CTTATATTTAGGAACAGAGGGAGTACA 57.856 37.037 0.00 0.00 0.00 2.90
1622 8831 9.364653 GACTTATATTTAGGAACAGAGGGAGTA 57.635 37.037 0.00 0.00 0.00 2.59
1623 8832 8.068733 AGACTTATATTTAGGAACAGAGGGAGT 58.931 37.037 0.00 0.00 0.00 3.85
1624 8833 8.485578 AGACTTATATTTAGGAACAGAGGGAG 57.514 38.462 0.00 0.00 0.00 4.30
1625 8834 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
1626 8835 9.331282 CAAAGACTTATATTTAGGAACAGAGGG 57.669 37.037 0.00 0.00 0.00 4.30
1642 8851 8.816894 TCTGGTGAAATCTCTACAAAGACTTAT 58.183 33.333 0.00 0.00 0.00 1.73
1643 8852 8.190326 TCTGGTGAAATCTCTACAAAGACTTA 57.810 34.615 0.00 0.00 0.00 2.24
1644 8853 7.067496 TCTGGTGAAATCTCTACAAAGACTT 57.933 36.000 0.00 0.00 0.00 3.01
1645 8854 6.672266 TCTGGTGAAATCTCTACAAAGACT 57.328 37.500 0.00 0.00 0.00 3.24
1646 8855 8.470805 TCTATCTGGTGAAATCTCTACAAAGAC 58.529 37.037 0.00 0.00 0.00 3.01
1647 8856 8.470805 GTCTATCTGGTGAAATCTCTACAAAGA 58.529 37.037 0.00 0.00 0.00 2.52
1648 8857 8.474025 AGTCTATCTGGTGAAATCTCTACAAAG 58.526 37.037 0.00 0.00 0.00 2.77
1649 8858 8.367660 AGTCTATCTGGTGAAATCTCTACAAA 57.632 34.615 0.00 0.00 0.00 2.83
1650 8859 7.962995 AGTCTATCTGGTGAAATCTCTACAA 57.037 36.000 0.00 0.00 0.00 2.41
1651 8860 8.053355 TGTAGTCTATCTGGTGAAATCTCTACA 58.947 37.037 0.00 0.00 33.27 2.74
1652 8861 8.453238 TGTAGTCTATCTGGTGAAATCTCTAC 57.547 38.462 0.00 0.00 0.00 2.59
1654 8863 9.073475 GTATGTAGTCTATCTGGTGAAATCTCT 57.927 37.037 0.00 0.00 0.00 3.10
1655 8864 8.018520 CGTATGTAGTCTATCTGGTGAAATCTC 58.981 40.741 0.00 0.00 0.00 2.75
1656 8865 7.720074 TCGTATGTAGTCTATCTGGTGAAATCT 59.280 37.037 0.00 0.00 0.00 2.40
1657 8866 7.872881 TCGTATGTAGTCTATCTGGTGAAATC 58.127 38.462 0.00 0.00 0.00 2.17
1658 8867 7.818997 TCGTATGTAGTCTATCTGGTGAAAT 57.181 36.000 0.00 0.00 0.00 2.17
1659 8868 7.634671 TTCGTATGTAGTCTATCTGGTGAAA 57.365 36.000 0.00 0.00 0.00 2.69
1660 8869 6.238676 GCTTCGTATGTAGTCTATCTGGTGAA 60.239 42.308 0.00 0.00 0.00 3.18
1661 8870 5.238868 GCTTCGTATGTAGTCTATCTGGTGA 59.761 44.000 0.00 0.00 0.00 4.02
1662 8871 5.008712 TGCTTCGTATGTAGTCTATCTGGTG 59.991 44.000 0.00 0.00 0.00 4.17
1663 8872 5.131067 TGCTTCGTATGTAGTCTATCTGGT 58.869 41.667 0.00 0.00 0.00 4.00
1664 8873 5.690997 TGCTTCGTATGTAGTCTATCTGG 57.309 43.478 0.00 0.00 0.00 3.86
1665 8874 7.987268 TTTTGCTTCGTATGTAGTCTATCTG 57.013 36.000 0.00 0.00 0.00 2.90
1666 8875 8.414003 TCATTTTGCTTCGTATGTAGTCTATCT 58.586 33.333 0.00 0.00 0.00 1.98
1667 8876 8.575565 TCATTTTGCTTCGTATGTAGTCTATC 57.424 34.615 0.00 0.00 0.00 2.08
1668 8877 9.547753 AATCATTTTGCTTCGTATGTAGTCTAT 57.452 29.630 0.00 0.00 0.00 1.98
1669 8878 8.817100 CAATCATTTTGCTTCGTATGTAGTCTA 58.183 33.333 0.00 0.00 0.00 2.59
1670 8879 7.549134 TCAATCATTTTGCTTCGTATGTAGTCT 59.451 33.333 0.00 0.00 0.00 3.24
1671 8880 7.684670 TCAATCATTTTGCTTCGTATGTAGTC 58.315 34.615 0.00 0.00 0.00 2.59
1672 8881 7.609760 TCAATCATTTTGCTTCGTATGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
1673 8882 9.162793 GATTCAATCATTTTGCTTCGTATGTAG 57.837 33.333 0.00 0.00 0.00 2.74
1674 8883 8.892723 AGATTCAATCATTTTGCTTCGTATGTA 58.107 29.630 0.00 0.00 0.00 2.29
1675 8884 7.765307 AGATTCAATCATTTTGCTTCGTATGT 58.235 30.769 0.00 0.00 0.00 2.29
1676 8885 9.720667 TTAGATTCAATCATTTTGCTTCGTATG 57.279 29.630 0.00 0.00 0.00 2.39
1678 8887 9.554724 GTTTAGATTCAATCATTTTGCTTCGTA 57.445 29.630 0.00 0.00 0.00 3.43
1679 8888 8.299570 AGTTTAGATTCAATCATTTTGCTTCGT 58.700 29.630 0.00 0.00 0.00 3.85
1680 8889 8.679288 AGTTTAGATTCAATCATTTTGCTTCG 57.321 30.769 0.00 0.00 0.00 3.79
1690 8899 9.638239 GGTGCATTTTAAGTTTAGATTCAATCA 57.362 29.630 0.00 0.00 0.00 2.57
1691 8900 9.860898 AGGTGCATTTTAAGTTTAGATTCAATC 57.139 29.630 0.00 0.00 0.00 2.67
1702 8911 8.999431 CGGATGTATATAGGTGCATTTTAAGTT 58.001 33.333 0.00 0.00 0.00 2.66
1703 8912 8.154856 ACGGATGTATATAGGTGCATTTTAAGT 58.845 33.333 0.00 0.00 0.00 2.24
1704 8913 8.547967 ACGGATGTATATAGGTGCATTTTAAG 57.452 34.615 0.00 0.00 0.00 1.85
1706 8915 9.594478 CATACGGATGTATATAGGTGCATTTTA 57.406 33.333 0.00 0.00 39.28 1.52
1707 8916 8.100791 ACATACGGATGTATATAGGTGCATTTT 58.899 33.333 12.79 0.00 44.77 1.82
1708 8917 7.549134 CACATACGGATGTATATAGGTGCATTT 59.451 37.037 14.23 0.00 44.82 2.32
1709 8918 7.041721 CACATACGGATGTATATAGGTGCATT 58.958 38.462 14.23 0.00 44.82 3.56
1710 8919 6.406961 CCACATACGGATGTATATAGGTGCAT 60.407 42.308 14.23 0.00 44.82 3.96
1711 8920 5.105513 CCACATACGGATGTATATAGGTGCA 60.106 44.000 14.23 0.00 44.82 4.57
1712 8921 5.105473 ACCACATACGGATGTATATAGGTGC 60.105 44.000 14.23 0.00 44.82 5.01
1713 8922 6.525578 ACCACATACGGATGTATATAGGTG 57.474 41.667 14.23 0.00 44.82 4.00
1714 8923 6.722590 TGAACCACATACGGATGTATATAGGT 59.277 38.462 14.23 13.36 44.82 3.08
1715 8924 7.165460 TGAACCACATACGGATGTATATAGG 57.835 40.000 14.23 12.65 44.82 2.57
1716 8925 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
1717 8926 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
1718 8927 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
1719 8928 7.449086 TCACTATGAACCACATACGGATGTATA 59.551 37.037 14.23 6.48 44.82 1.47
1720 8929 6.266786 TCACTATGAACCACATACGGATGTAT 59.733 38.462 14.23 5.54 44.82 2.29
1721 8930 5.595133 TCACTATGAACCACATACGGATGTA 59.405 40.000 14.23 0.00 44.82 2.29
1722 8931 5.105106 TTCACTATGAACCACATACGGATGT 60.105 40.000 7.68 7.68 37.89 3.06
1723 8932 4.944048 TCACTATGAACCACATACGGATG 58.056 43.478 5.94 5.94 40.07 3.51
1724 8933 5.607939 TTCACTATGAACCACATACGGAT 57.392 39.130 0.00 0.00 40.07 4.18
1725 8934 5.408880 TTTCACTATGAACCACATACGGA 57.591 39.130 0.00 0.00 35.89 4.69
1726 8935 6.049149 AGATTTCACTATGAACCACATACGG 58.951 40.000 0.00 0.00 35.89 4.02
1727 8936 6.980978 AGAGATTTCACTATGAACCACATACG 59.019 38.462 0.00 0.00 35.89 3.06
1728 8937 9.250624 GTAGAGATTTCACTATGAACCACATAC 57.749 37.037 0.00 0.00 35.89 2.39
1729 8938 8.977412 TGTAGAGATTTCACTATGAACCACATA 58.023 33.333 0.00 0.00 35.89 2.29
1730 8939 7.851228 TGTAGAGATTTCACTATGAACCACAT 58.149 34.615 0.00 0.00 35.89 3.21
1731 8940 7.239763 TGTAGAGATTTCACTATGAACCACA 57.760 36.000 0.00 0.00 35.89 4.17
1732 8941 8.547967 TTTGTAGAGATTTCACTATGAACCAC 57.452 34.615 0.00 0.00 35.89 4.16
1733 8942 8.593679 TCTTTGTAGAGATTTCACTATGAACCA 58.406 33.333 0.00 0.00 35.89 3.67
1734 8943 8.874816 GTCTTTGTAGAGATTTCACTATGAACC 58.125 37.037 0.00 0.00 35.89 3.62
1735 8944 9.646427 AGTCTTTGTAGAGATTTCACTATGAAC 57.354 33.333 0.00 0.00 35.89 3.18
1753 8962 9.379791 CCTCCGTTTCTAAATATAAGTCTTTGT 57.620 33.333 0.00 0.00 0.00 2.83
1754 8963 8.827677 CCCTCCGTTTCTAAATATAAGTCTTTG 58.172 37.037 0.00 0.00 0.00 2.77
1755 8964 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
1756 8965 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
1757 8966 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
1758 8967 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
1759 8968 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
1760 8969 9.857957 GATACTCCCTCCGTTTCTAAATATAAG 57.142 37.037 0.00 0.00 0.00 1.73
1761 8970 9.597681 AGATACTCCCTCCGTTTCTAAATATAA 57.402 33.333 0.00 0.00 0.00 0.98
1762 8971 9.240734 GAGATACTCCCTCCGTTTCTAAATATA 57.759 37.037 0.00 0.00 0.00 0.86
1763 8972 7.951245 AGAGATACTCCCTCCGTTTCTAAATAT 59.049 37.037 0.00 0.00 0.00 1.28
1764 8973 7.296098 AGAGATACTCCCTCCGTTTCTAAATA 58.704 38.462 0.00 0.00 0.00 1.40
1765 8974 6.137559 AGAGATACTCCCTCCGTTTCTAAAT 58.862 40.000 0.00 0.00 0.00 1.40
1766 8975 5.516984 AGAGATACTCCCTCCGTTTCTAAA 58.483 41.667 0.00 0.00 0.00 1.85
1767 8976 5.126699 AGAGATACTCCCTCCGTTTCTAA 57.873 43.478 0.00 0.00 0.00 2.10
1768 8977 4.792513 AGAGATACTCCCTCCGTTTCTA 57.207 45.455 0.00 0.00 0.00 2.10
1769 8978 3.673543 AGAGATACTCCCTCCGTTTCT 57.326 47.619 0.00 0.00 0.00 2.52
1770 8979 4.739587 AAAGAGATACTCCCTCCGTTTC 57.260 45.455 0.00 0.00 0.00 2.78
1771 8980 4.323562 CCAAAAGAGATACTCCCTCCGTTT 60.324 45.833 0.00 0.00 0.00 3.60
1772 8981 3.197983 CCAAAAGAGATACTCCCTCCGTT 59.802 47.826 0.00 0.00 0.00 4.44
1773 8982 2.766828 CCAAAAGAGATACTCCCTCCGT 59.233 50.000 0.00 0.00 0.00 4.69
1774 8983 3.031736 TCCAAAAGAGATACTCCCTCCG 58.968 50.000 0.00 0.00 0.00 4.63
1775 8984 5.186942 GTTTCCAAAAGAGATACTCCCTCC 58.813 45.833 0.00 0.00 0.00 4.30
1776 8985 5.805728 TGTTTCCAAAAGAGATACTCCCTC 58.194 41.667 0.00 0.00 0.00 4.30
1777 8986 5.548056 TCTGTTTCCAAAAGAGATACTCCCT 59.452 40.000 0.00 0.00 0.00 4.20
1778 8987 5.644206 GTCTGTTTCCAAAAGAGATACTCCC 59.356 44.000 3.06 0.00 0.00 4.30
1779 8988 5.348997 CGTCTGTTTCCAAAAGAGATACTCC 59.651 44.000 3.06 0.00 0.00 3.85
1780 8989 6.157211 TCGTCTGTTTCCAAAAGAGATACTC 58.843 40.000 3.06 0.00 0.00 2.59
1781 8990 6.097915 TCGTCTGTTTCCAAAAGAGATACT 57.902 37.500 3.06 0.00 0.00 2.12
1782 8991 6.202188 TGTTCGTCTGTTTCCAAAAGAGATAC 59.798 38.462 3.06 3.74 0.00 2.24
1783 8992 6.202188 GTGTTCGTCTGTTTCCAAAAGAGATA 59.798 38.462 3.06 0.00 0.00 1.98
1784 8993 5.007724 GTGTTCGTCTGTTTCCAAAAGAGAT 59.992 40.000 3.06 0.00 0.00 2.75
1785 8994 4.331717 GTGTTCGTCTGTTTCCAAAAGAGA 59.668 41.667 0.00 0.00 0.00 3.10
1786 8995 4.094294 TGTGTTCGTCTGTTTCCAAAAGAG 59.906 41.667 0.00 0.00 0.00 2.85
1787 8996 4.004314 TGTGTTCGTCTGTTTCCAAAAGA 58.996 39.130 0.00 0.00 0.00 2.52
1788 8997 4.095610 GTGTGTTCGTCTGTTTCCAAAAG 58.904 43.478 0.00 0.00 0.00 2.27
1876 9666 7.151976 TCAATCTTACAACATCAAGTTCGAGA 58.848 34.615 0.00 0.00 38.74 4.04
1877 9667 7.116948 ACTCAATCTTACAACATCAAGTTCGAG 59.883 37.037 0.00 0.00 38.74 4.04
1942 9732 2.196595 TGTAGCTTGTAGGCCCTTCAT 58.803 47.619 0.00 0.00 0.00 2.57
1954 9744 1.806542 AGCATTGTCGGTTGTAGCTTG 59.193 47.619 0.00 0.00 0.00 4.01
2027 9851 4.646960 TGATTACGACATGCAAATGAACG 58.353 39.130 0.00 0.33 0.00 3.95
2081 9905 2.202797 CAGCCGACGATCCCACAG 60.203 66.667 0.00 0.00 0.00 3.66
2378 10202 9.660180 ATTCCTCTTGAAGAAAACTACTATGAC 57.340 33.333 0.00 0.00 36.14 3.06
2382 10206 8.582437 TCGAATTCCTCTTGAAGAAAACTACTA 58.418 33.333 0.00 0.00 36.14 1.82
2397 10221 1.471119 TACGGCACTCGAATTCCTCT 58.529 50.000 0.00 0.00 42.43 3.69
2413 10238 6.291322 CGCATTTCTCACTTCTCTGTATTACG 60.291 42.308 0.00 0.00 0.00 3.18
2419 10244 3.667497 TCGCATTTCTCACTTCTCTGT 57.333 42.857 0.00 0.00 0.00 3.41
2437 10262 6.908870 TTCAAGGTAAGTCATTGATCATCG 57.091 37.500 0.00 0.00 44.42 3.84
2438 10263 7.121168 TGGTTTCAAGGTAAGTCATTGATCATC 59.879 37.037 0.00 0.00 44.42 2.92
2439 10264 6.947733 TGGTTTCAAGGTAAGTCATTGATCAT 59.052 34.615 0.00 0.00 44.42 2.45
2440 10265 6.303054 TGGTTTCAAGGTAAGTCATTGATCA 58.697 36.000 0.00 0.00 44.42 2.92
2441 10266 6.655003 TCTGGTTTCAAGGTAAGTCATTGATC 59.345 38.462 0.00 0.00 44.42 2.92
2442 10267 6.542821 TCTGGTTTCAAGGTAAGTCATTGAT 58.457 36.000 0.00 0.00 44.42 2.57
2443 10268 5.935945 TCTGGTTTCAAGGTAAGTCATTGA 58.064 37.500 0.00 0.00 43.58 2.57
2444 10269 5.997746 TCTCTGGTTTCAAGGTAAGTCATTG 59.002 40.000 0.00 0.00 38.91 2.82
2445 10270 6.187727 TCTCTGGTTTCAAGGTAAGTCATT 57.812 37.500 0.00 0.00 0.00 2.57
2446 10271 5.825593 TCTCTGGTTTCAAGGTAAGTCAT 57.174 39.130 0.00 0.00 0.00 3.06



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.