Multiple sequence alignment - TraesCS2B01G404900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G404900 chr2B 100.000 7387 0 0 293 7679 572794582 572787196 0.000000e+00 13642.0
1 TraesCS2B01G404900 chr2B 86.667 225 16 9 4822 5038 692173801 692174019 3.580000e-58 237.0
2 TraesCS2B01G404900 chr2B 85.500 200 17 10 5572 5764 133982318 133982512 1.690000e-46 198.0
3 TraesCS2B01G404900 chr2B 95.276 127 3 2 3920 4044 265221449 265221324 1.690000e-46 198.0
4 TraesCS2B01G404900 chr2B 100.000 106 0 0 1 106 572794874 572794769 6.080000e-46 196.0
5 TraesCS2B01G404900 chr2B 93.985 133 3 4 3920 4048 708794718 708794587 6.080000e-46 196.0
6 TraesCS2B01G404900 chr2B 92.500 80 5 1 4051 4129 572790901 572790822 6.300000e-21 113.0
7 TraesCS2B01G404900 chr2B 89.062 64 6 1 3035 3098 723392996 723392934 2.300000e-10 78.7
8 TraesCS2B01G404900 chr2D 96.855 2862 51 13 293 3132 489413030 489410186 0.000000e+00 4750.0
9 TraesCS2B01G404900 chr2D 94.056 2658 94 24 5043 7677 489407903 489405287 0.000000e+00 3975.0
10 TraesCS2B01G404900 chr2D 95.266 1373 44 11 4051 5409 489409267 489407902 0.000000e+00 2156.0
11 TraesCS2B01G404900 chr2D 95.810 883 26 5 3173 4053 489410062 489409189 0.000000e+00 1415.0
12 TraesCS2B01G404900 chr2D 96.721 122 2 1 3920 4039 480396245 480396366 1.310000e-47 202.0
13 TraesCS2B01G404900 chr2D 93.333 105 7 0 1 105 489413159 489413055 1.030000e-33 156.0
14 TraesCS2B01G404900 chr2D 94.792 96 5 0 3108 3203 589522249 589522344 4.800000e-32 150.0
15 TraesCS2B01G404900 chr2A 95.403 2393 81 13 293 2662 632955723 632953337 0.000000e+00 3783.0
16 TraesCS2B01G404900 chr2A 93.359 1822 86 15 4051 5851 632952146 632950339 0.000000e+00 2662.0
17 TraesCS2B01G404900 chr2A 92.519 1751 76 18 5946 7677 632950347 632948633 0.000000e+00 2457.0
18 TraesCS2B01G404900 chr2A 94.691 1036 34 10 3021 4053 632953085 632952068 0.000000e+00 1589.0
19 TraesCS2B01G404900 chr2A 95.263 190 6 2 2796 2982 632953335 632953146 1.620000e-76 298.0
20 TraesCS2B01G404900 chr2A 82.258 186 27 6 4793 4975 149081231 149081049 1.030000e-33 156.0
21 TraesCS2B01G404900 chr2A 93.333 105 7 0 1 105 632955852 632955748 1.030000e-33 156.0
22 TraesCS2B01G404900 chr2A 92.929 99 7 0 5846 5944 16263675 16263577 2.230000e-30 145.0
23 TraesCS2B01G404900 chr2A 86.567 134 14 4 3106 3236 177665193 177665325 2.230000e-30 145.0
24 TraesCS2B01G404900 chr6B 87.444 223 19 5 4835 5050 166590771 166590991 1.650000e-61 248.0
25 TraesCS2B01G404900 chr6B 98.851 87 1 0 5848 5934 499891558 499891644 1.030000e-33 156.0
26 TraesCS2B01G404900 chr6B 97.674 86 2 0 3109 3194 472612058 472612143 1.730000e-31 148.0
27 TraesCS2B01G404900 chr6B 92.000 100 8 0 3105 3204 13827617 13827518 2.890000e-29 141.0
28 TraesCS2B01G404900 chr6B 89.130 46 3 2 2428 2472 457879487 457879443 1.000000e-03 56.5
29 TraesCS2B01G404900 chr1D 85.417 240 24 10 4802 5037 42898693 42898925 9.960000e-59 239.0
30 TraesCS2B01G404900 chr1D 84.127 252 29 10 4802 5048 42983612 42983857 4.630000e-57 233.0
31 TraesCS2B01G404900 chr1D 90.000 110 10 1 5848 5957 483907582 483907690 2.890000e-29 141.0
32 TraesCS2B01G404900 chr1D 97.500 40 1 0 3196 3235 120537653 120537614 1.380000e-07 69.4
33 TraesCS2B01G404900 chr4B 85.294 238 20 12 4796 5022 587750869 587751102 1.670000e-56 231.0
34 TraesCS2B01G404900 chr4B 92.308 52 2 2 3185 3235 517959002 517958952 1.070000e-08 73.1
35 TraesCS2B01G404900 chr1A 84.583 240 24 11 4802 5037 42516445 42516675 7.750000e-55 226.0
36 TraesCS2B01G404900 chr1A 87.075 147 17 2 3694 3840 14080639 14080495 1.710000e-36 165.0
37 TraesCS2B01G404900 chr3A 96.183 131 5 0 3693 3823 659015508 659015378 1.680000e-51 215.0
38 TraesCS2B01G404900 chr3A 93.939 132 4 3 3921 4049 601553399 601553529 6.080000e-46 196.0
39 TraesCS2B01G404900 chr3A 87.500 64 7 1 3044 3107 550440450 550440512 1.070000e-08 73.1
40 TraesCS2B01G404900 chr3A 88.235 51 6 0 3196 3246 550440496 550440446 2.310000e-05 62.1
41 TraesCS2B01G404900 chr5D 95.420 131 5 1 3694 3823 412263451 412263321 2.810000e-49 207.0
42 TraesCS2B01G404900 chr5D 95.506 89 4 0 3111 3199 350331864 350331952 8.030000e-30 143.0
43 TraesCS2B01G404900 chr5D 86.047 129 14 3 5848 5976 473790000 473790124 1.340000e-27 135.0
44 TraesCS2B01G404900 chr5D 93.421 76 3 2 4042 4115 251304038 251303963 2.270000e-20 111.0
45 TraesCS2B01G404900 chr5D 93.421 76 3 2 4043 4116 483269413 483269488 2.270000e-20 111.0
46 TraesCS2B01G404900 chr5A 96.694 121 2 1 3920 4038 534066303 534066183 4.700000e-47 200.0
47 TraesCS2B01G404900 chr5A 93.130 131 8 1 3694 3823 524028514 524028384 2.830000e-44 191.0
48 TraesCS2B01G404900 chr5A 95.506 89 4 0 3111 3199 450750707 450750795 8.030000e-30 143.0
49 TraesCS2B01G404900 chr4A 94.574 129 7 0 3693 3821 60654158 60654286 4.700000e-47 200.0
50 TraesCS2B01G404900 chr4A 93.284 134 5 3 3920 4050 216809755 216809623 2.190000e-45 195.0
51 TraesCS2B01G404900 chr7B 95.238 126 4 1 3920 4043 252794328 252794453 1.690000e-46 198.0
52 TraesCS2B01G404900 chr7B 93.939 132 4 4 3694 3823 682239455 682239584 6.080000e-46 196.0
53 TraesCS2B01G404900 chr7B 92.537 67 3 2 3171 3236 109186498 109186563 2.280000e-15 95.3
54 TraesCS2B01G404900 chr7B 86.420 81 9 2 3035 3115 13866726 13866648 3.820000e-13 87.9
55 TraesCS2B01G404900 chr7B 95.556 45 2 0 3196 3240 103891478 103891434 1.070000e-08 73.1
56 TraesCS2B01G404900 chr3D 93.182 132 8 1 3693 3823 524713715 524713584 7.860000e-45 193.0
57 TraesCS2B01G404900 chr3D 91.852 135 10 1 3693 3826 311668929 311668795 3.660000e-43 187.0
58 TraesCS2B01G404900 chr7D 81.048 248 36 7 4810 5048 28006143 28005898 3.660000e-43 187.0
59 TraesCS2B01G404900 chr7D 92.079 101 8 0 5846 5946 478795416 478795316 8.030000e-30 143.0
60 TraesCS2B01G404900 chr7D 93.243 74 3 2 4043 4114 299189177 299189250 2.930000e-19 108.0
61 TraesCS2B01G404900 chr5B 87.857 140 9 5 3974 4113 571180600 571180469 2.870000e-34 158.0
62 TraesCS2B01G404900 chr5B 95.604 91 3 1 3111 3200 62940408 62940318 2.230000e-30 145.0
63 TraesCS2B01G404900 chr5B 92.308 104 5 3 5847 5947 315893440 315893337 2.230000e-30 145.0
64 TraesCS2B01G404900 chr5B 92.208 77 4 2 4039 4113 698585073 698584997 2.930000e-19 108.0
65 TraesCS2B01G404900 chr1B 94.681 94 5 0 3108 3201 151363653 151363746 6.210000e-31 147.0
66 TraesCS2B01G404900 chr4D 92.079 101 7 1 5846 5946 15316027 15316126 2.890000e-29 141.0
67 TraesCS2B01G404900 chr4D 93.333 75 3 2 4043 4115 421896444 421896518 8.150000e-20 110.0
68 TraesCS2B01G404900 chr4D 89.831 59 3 3 3046 3102 281208558 281208501 1.070000e-08 73.1
69 TraesCS2B01G404900 chr7A 88.889 72 6 2 3045 3115 486925507 486925437 3.820000e-13 87.9
70 TraesCS2B01G404900 chr7A 89.062 64 5 2 3052 3115 678142722 678142661 2.300000e-10 78.7
71 TraesCS2B01G404900 chr3B 82.927 82 10 4 3059 3138 181296510 181296589 3.840000e-08 71.3
72 TraesCS2B01G404900 chr6D 90.196 51 2 3 3196 3244 374820244 374820195 6.430000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G404900 chr2B 572787196 572794874 7678 True 4650.333333 13642 97.500000 1 7679 3 chr2B.!!$R4 7678
1 TraesCS2B01G404900 chr2D 489405287 489413159 7872 True 2490.400000 4750 95.064000 1 7677 5 chr2D.!!$R1 7676
2 TraesCS2B01G404900 chr2A 632948633 632955852 7219 True 1824.166667 3783 94.094667 1 7677 6 chr2A.!!$R3 7676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.395312 TGTGGGACCGAGAAAAGACC 59.605 55.0 0.00 0.00 0.00 3.85 F
816 841 1.465189 AACCTCCCCTCCCCTCTCTT 61.465 60.0 0.00 0.00 0.00 2.85 F
1666 1697 2.263099 CTCCCTCTCCCCCTCCATGT 62.263 65.0 0.00 0.00 0.00 3.21 F
3488 3631 0.531532 AATCTGGCCGATTCTCTGCG 60.532 55.0 14.54 0.00 37.85 5.18 F
4066 4211 0.037734 AATCCAAAGTGGTCGGACCC 59.962 55.0 23.81 14.91 39.03 4.46 F
4069 4214 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.0 23.81 13.97 37.50 3.46 F
4070 4215 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.0 23.81 9.51 37.50 3.46 F
5861 6394 0.702902 TTCTGTACTCCCTCCGTCCT 59.297 55.0 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1666 1697 1.609580 GCCCACGTAGTTGGTGATCAA 60.610 52.381 0.00 0.00 46.15 2.57 R
2545 2576 0.396811 AAAGCCCGCACAGTAACTCT 59.603 50.000 0.00 0.00 0.00 3.24 R
3560 3703 0.984230 GTCTGGAGGTTGGTGGATCA 59.016 55.000 0.00 0.00 0.00 2.92 R
5412 5937 1.032014 TAACTACATCGGCGTACCCC 58.968 55.000 6.85 0.00 0.00 4.95 R
5843 6376 1.588239 TAGGACGGAGGGAGTACAGA 58.412 55.000 0.00 0.00 0.00 3.41 R
5921 6454 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73 R
5922 6455 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40 R
7568 8118 0.179089 ACAGCGCTGCTCTAGAATGG 60.179 55.000 36.28 9.45 36.40 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 2.692557 AGAATGATCCACGTCTCTCCTG 59.307 50.000 0.00 0.00 0.00 3.86
94 95 1.606889 ACGTCTCTCCTGTGGGACC 60.607 63.158 0.00 0.00 36.57 4.46
105 106 0.395312 TGTGGGACCGAGAAAAGACC 59.605 55.000 0.00 0.00 0.00 3.85
361 362 1.545582 TCCCTCCTTGTACGTAAACCG 59.454 52.381 0.00 0.00 44.03 4.44
480 483 5.007234 CCGAAATACACACAGACAAGAAACA 59.993 40.000 0.00 0.00 0.00 2.83
483 486 5.947228 ATACACACAGACAAGAAACATGG 57.053 39.130 0.00 0.00 0.00 3.66
585 605 5.365021 AAACTAATCCTCCACCATGAGAG 57.635 43.478 0.00 0.00 34.11 3.20
816 841 1.465189 AACCTCCCCTCCCCTCTCTT 61.465 60.000 0.00 0.00 0.00 2.85
927 952 2.285668 CAGCTTGGGAGGGGAGGA 60.286 66.667 0.00 0.00 0.00 3.71
1666 1697 2.263099 CTCCCTCTCCCCCTCCATGT 62.263 65.000 0.00 0.00 0.00 3.21
2349 2380 5.240623 TGGTAGCCACAAACTATTGAAACTG 59.759 40.000 0.00 0.00 38.94 3.16
2450 2481 9.743057 TGTTAATTTGAACTAAAACCATGACAG 57.257 29.630 0.00 0.00 0.00 3.51
2624 2655 3.243602 GGTTGTTCAACCCGTAGCAATTT 60.244 43.478 20.27 0.00 36.84 1.82
2648 2679 4.744237 ACTGGGTATTCGGCCTTATACTA 58.256 43.478 18.20 10.46 0.00 1.82
2747 2781 5.763698 GCCCAGTAGACCTATTTTCAATACC 59.236 44.000 0.00 0.00 0.00 2.73
2867 2901 3.211045 ACAATAACAGCGACCACACTTT 58.789 40.909 0.00 0.00 0.00 2.66
2937 2974 9.509956 AGTACCACACAATTACTTTTATTAGCA 57.490 29.630 0.00 0.00 0.00 3.49
3138 3198 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
3158 3218 8.989653 AAGAGTGTTTAGATCACTAAAGTAGC 57.010 34.615 0.00 0.00 45.42 3.58
3194 3337 6.756221 TCTTATATTTCTTTACGGAGGGAGC 58.244 40.000 0.00 0.00 0.00 4.70
3206 3349 2.864343 CGGAGGGAGCACTAAATTAACG 59.136 50.000 0.00 0.00 0.00 3.18
3420 3563 7.876936 ATCATCTTTATTGTTCTGATGTGCT 57.123 32.000 0.00 0.00 36.74 4.40
3488 3631 0.531532 AATCTGGCCGATTCTCTGCG 60.532 55.000 14.54 0.00 37.85 5.18
3560 3703 1.545582 CCTTTTGCGGTGGATGATGTT 59.454 47.619 0.00 0.00 0.00 2.71
3571 3714 3.355378 TGGATGATGTTGATCCACCAAC 58.645 45.455 0.00 0.00 43.71 3.77
3763 3906 6.696148 GGATGTATCTAGACACGTTTTAGTGG 59.304 42.308 0.00 0.00 45.80 4.00
3983 4128 3.244630 TGCGTAATAGACCCAAAGTGGTT 60.245 43.478 0.00 0.00 39.24 3.67
4029 4174 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
4030 4175 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
4031 4176 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
4032 4177 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
4033 4178 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
4034 4179 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
4045 4190 2.438795 GGCTGCCCCCTGTTTACA 59.561 61.111 7.66 0.00 0.00 2.41
4046 4191 1.000359 GGCTGCCCCCTGTTTACAT 60.000 57.895 7.66 0.00 0.00 2.29
4047 4192 0.257616 GGCTGCCCCCTGTTTACATA 59.742 55.000 7.66 0.00 0.00 2.29
4048 4193 1.341581 GGCTGCCCCCTGTTTACATAA 60.342 52.381 7.66 0.00 0.00 1.90
4049 4194 2.666317 GCTGCCCCCTGTTTACATAAT 58.334 47.619 0.00 0.00 0.00 1.28
4050 4195 2.623416 GCTGCCCCCTGTTTACATAATC 59.377 50.000 0.00 0.00 0.00 1.75
4051 4196 3.222603 CTGCCCCCTGTTTACATAATCC 58.777 50.000 0.00 0.00 0.00 3.01
4052 4197 2.583101 TGCCCCCTGTTTACATAATCCA 59.417 45.455 0.00 0.00 0.00 3.41
4053 4198 3.011821 TGCCCCCTGTTTACATAATCCAA 59.988 43.478 0.00 0.00 0.00 3.53
4054 4199 4.027437 GCCCCCTGTTTACATAATCCAAA 58.973 43.478 0.00 0.00 0.00 3.28
4055 4200 4.099419 GCCCCCTGTTTACATAATCCAAAG 59.901 45.833 0.00 0.00 0.00 2.77
4056 4201 5.269189 CCCCCTGTTTACATAATCCAAAGT 58.731 41.667 0.00 0.00 0.00 2.66
4057 4202 5.127031 CCCCCTGTTTACATAATCCAAAGTG 59.873 44.000 0.00 0.00 0.00 3.16
4058 4203 5.127031 CCCCTGTTTACATAATCCAAAGTGG 59.873 44.000 0.00 0.00 39.43 4.00
4059 4204 5.714806 CCCTGTTTACATAATCCAAAGTGGT 59.285 40.000 0.00 0.00 39.03 4.16
4060 4205 6.127730 CCCTGTTTACATAATCCAAAGTGGTC 60.128 42.308 0.00 0.00 39.03 4.02
4061 4206 6.403200 CCTGTTTACATAATCCAAAGTGGTCG 60.403 42.308 0.00 0.00 39.03 4.79
4062 4207 5.413213 TGTTTACATAATCCAAAGTGGTCGG 59.587 40.000 0.00 0.00 39.03 4.79
4063 4208 3.992943 ACATAATCCAAAGTGGTCGGA 57.007 42.857 0.00 0.00 39.03 4.55
4064 4209 3.606687 ACATAATCCAAAGTGGTCGGAC 58.393 45.455 0.00 0.00 39.03 4.79
4065 4210 2.773993 TAATCCAAAGTGGTCGGACC 57.226 50.000 20.36 20.36 39.03 4.46
4066 4211 0.037734 AATCCAAAGTGGTCGGACCC 59.962 55.000 23.81 14.91 39.03 4.46
4067 4212 0.840722 ATCCAAAGTGGTCGGACCCT 60.841 55.000 23.81 16.82 39.03 4.34
4068 4213 1.057851 TCCAAAGTGGTCGGACCCTT 61.058 55.000 23.81 21.08 39.03 3.95
4069 4214 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
4070 4215 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
4071 4216 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
4072 4217 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
4073 4218 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
4074 4219 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
4075 4220 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
4076 4221 1.689582 GTCGGACCCTTCCCCAGAT 60.690 63.158 0.00 0.00 38.99 2.90
4077 4222 1.382695 TCGGACCCTTCCCCAGATC 60.383 63.158 0.00 0.00 38.99 2.75
4078 4223 2.444256 CGGACCCTTCCCCAGATCC 61.444 68.421 0.00 0.00 38.99 3.36
4079 4224 1.004891 GGACCCTTCCCCAGATCCT 59.995 63.158 0.00 0.00 35.57 3.24
4080 4225 1.348775 GGACCCTTCCCCAGATCCTG 61.349 65.000 0.00 0.00 35.57 3.86
4081 4226 1.988982 GACCCTTCCCCAGATCCTGC 61.989 65.000 0.00 0.00 0.00 4.85
4082 4227 2.002977 CCCTTCCCCAGATCCTGCA 61.003 63.158 0.00 0.00 0.00 4.41
4083 4228 1.225704 CCTTCCCCAGATCCTGCAC 59.774 63.158 0.00 0.00 0.00 4.57
4141 4286 8.740369 CGTTACGTAATCCAGTTAATTAGTCAG 58.260 37.037 11.86 0.00 0.00 3.51
4570 4721 4.811557 GCCCTTATGTAGTTCAGTGTGATC 59.188 45.833 0.00 0.00 0.00 2.92
4688 4840 4.638304 TCCCTGAGCTGTTTAAGTACAAC 58.362 43.478 0.00 0.00 0.00 3.32
4751 4903 7.995488 ACATTTCTACTTTAGCCTCATTGCTAT 59.005 33.333 0.00 0.00 43.04 2.97
4804 4959 7.748847 AGCTGTAACAAAAACATATTACTCCG 58.251 34.615 0.00 0.00 0.00 4.63
4806 4961 8.019094 GCTGTAACAAAAACATATTACTCCGTT 58.981 33.333 0.00 0.00 0.00 4.44
4807 4962 9.887406 CTGTAACAAAAACATATTACTCCGTTT 57.113 29.630 0.00 0.00 33.15 3.60
4808 4963 9.881529 TGTAACAAAAACATATTACTCCGTTTC 57.118 29.630 0.00 0.00 31.45 2.78
4829 4989 7.201232 CGTTTCTTTTACTCCGCACATAAAATG 60.201 37.037 0.00 0.00 29.82 2.32
4850 5010 4.439057 TGTGTCTAAAGTCAAACTTCGCT 58.561 39.130 0.00 0.00 37.47 4.93
5146 5306 8.583810 GCAATGTGCAATATTTGATTGTAGAT 57.416 30.769 0.00 0.00 44.26 1.98
5280 5440 0.767375 TTGAGTGAGAGCAGGCCTTT 59.233 50.000 0.00 0.00 0.00 3.11
5329 5489 6.862209 TGTATGCCATTGTGAAGGTTATTTC 58.138 36.000 0.00 0.00 0.00 2.17
5399 5924 7.994194 AGAGATTGAGCATTCTTGGTTAAATC 58.006 34.615 0.00 0.00 37.18 2.17
5412 5937 5.341872 TGGTTAAATCATGAAATGGCCAG 57.658 39.130 13.05 0.00 46.73 4.85
5478 6006 8.418662 CCAGTCATATGATCAAAATCCACAAAT 58.581 33.333 9.02 0.00 0.00 2.32
5692 6225 8.528044 TTTTTAGAGAAAAGGAGCTTTTGGTA 57.472 30.769 0.00 0.00 42.72 3.25
5790 6323 6.752815 GGAGTACAAGAAGTTCCTTAGATTCG 59.247 42.308 0.00 0.00 0.00 3.34
5843 6376 5.713389 GCTACCCCCTGTTTGTTAAATACTT 59.287 40.000 0.00 0.00 0.00 2.24
5844 6377 6.127814 GCTACCCCCTGTTTGTTAAATACTTC 60.128 42.308 0.00 0.00 0.00 3.01
5845 6378 5.960704 ACCCCCTGTTTGTTAAATACTTCT 58.039 37.500 0.00 0.00 0.00 2.85
5846 6379 5.773176 ACCCCCTGTTTGTTAAATACTTCTG 59.227 40.000 0.00 0.00 0.00 3.02
5847 6380 5.773176 CCCCCTGTTTGTTAAATACTTCTGT 59.227 40.000 0.00 0.00 0.00 3.41
5859 6392 1.836802 ACTTCTGTACTCCCTCCGTC 58.163 55.000 0.00 0.00 0.00 4.79
5861 6394 0.702902 TTCTGTACTCCCTCCGTCCT 59.297 55.000 0.00 0.00 0.00 3.85
5868 6401 5.271598 TGTACTCCCTCCGTCCTAAAATAA 58.728 41.667 0.00 0.00 0.00 1.40
5869 6402 5.361857 TGTACTCCCTCCGTCCTAAAATAAG 59.638 44.000 0.00 0.00 0.00 1.73
5872 6405 4.098894 TCCCTCCGTCCTAAAATAAGTGT 58.901 43.478 0.00 0.00 0.00 3.55
5875 6408 5.338137 CCCTCCGTCCTAAAATAAGTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
5878 6411 7.820872 CCTCCGTCCTAAAATAAGTGTCTTAAA 59.179 37.037 0.00 0.00 0.00 1.52
5880 6413 9.158233 TCCGTCCTAAAATAAGTGTCTTAAATG 57.842 33.333 0.00 0.00 0.00 2.32
5931 6464 8.110860 ACTAATGTTGAGACACTTATTTTGGG 57.889 34.615 0.00 0.00 38.91 4.12
5944 6477 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
6075 6609 1.217511 CGCTGAGATGGCACTGAGT 59.782 57.895 0.00 0.00 0.00 3.41
6160 6694 4.907269 TCTAGGCCAAGACATCATATTGGA 59.093 41.667 5.01 0.00 45.19 3.53
6197 6731 7.254852 GCCGTTGTATTATTGAAAAAGATGGA 58.745 34.615 0.00 0.00 0.00 3.41
6274 6810 8.028354 TGTTCAATGTGGAGTGCTATAATTTTG 58.972 33.333 0.00 0.00 0.00 2.44
6276 6812 7.537715 TCAATGTGGAGTGCTATAATTTTGTG 58.462 34.615 0.00 0.00 0.00 3.33
6335 6871 5.907945 CCATAGTTACAGATCTAACACGACG 59.092 44.000 10.31 0.00 0.00 5.12
6681 7220 2.663188 CCGGAGAAGCCATAGCGC 60.663 66.667 0.00 0.00 46.67 5.92
6729 7268 2.428530 CACACCGGAAGATCAGATCTCA 59.571 50.000 13.63 0.00 39.08 3.27
6730 7269 3.099905 ACACCGGAAGATCAGATCTCAA 58.900 45.455 13.63 0.00 39.08 3.02
6731 7270 3.708631 ACACCGGAAGATCAGATCTCAAT 59.291 43.478 13.63 0.00 39.08 2.57
6771 7311 0.169009 GAGCCCAGCGATGTTTTGTC 59.831 55.000 0.00 0.00 0.00 3.18
6780 7320 1.595976 CGATGTTTTGTCGGTGCGTTT 60.596 47.619 0.00 0.00 35.55 3.60
6781 7321 1.778591 GATGTTTTGTCGGTGCGTTTG 59.221 47.619 0.00 0.00 0.00 2.93
7051 7591 5.009010 AGCCAAACTGTTCAGTAAACATCAG 59.991 40.000 5.87 0.00 46.53 2.90
7130 7670 0.378257 CTTTGATCCGCCGGAATGTG 59.622 55.000 11.19 0.00 34.34 3.21
7352 7901 2.028203 GCACAAAAGTGGTGGGCATATT 60.028 45.455 0.00 0.00 45.11 1.28
7476 8026 2.666619 CGCAAGAACTCCAACTGCATTC 60.667 50.000 0.00 0.00 43.02 2.67
7561 8111 1.209504 CGCAAGGGGTTCAATCCTAGA 59.790 52.381 0.00 0.00 32.21 2.43
7566 8116 5.394553 GCAAGGGGTTCAATCCTAGAATTTG 60.395 44.000 0.00 0.00 32.21 2.32
7568 8118 3.384789 GGGGTTCAATCCTAGAATTTGCC 59.615 47.826 0.00 0.00 0.00 4.52
7570 8120 4.023291 GGTTCAATCCTAGAATTTGCCCA 58.977 43.478 0.00 0.00 0.00 5.36
7677 8232 3.430333 TCCACTGGCTTTTCGTTTTTC 57.570 42.857 0.00 0.00 0.00 2.29
7678 8233 3.020984 TCCACTGGCTTTTCGTTTTTCT 58.979 40.909 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.944024 TGCCGTTGTGTGTTTTAGGAG 59.056 47.619 0.00 0.00 0.00 3.69
87 88 3.228499 GGTCTTTTCTCGGTCCCAC 57.772 57.895 0.00 0.00 0.00 4.61
337 338 2.592102 TACGTACAAGGAGGGACACT 57.408 50.000 0.00 0.00 0.00 3.55
397 400 6.704512 AAATAATTGTGTTGAATTGGCGAC 57.295 33.333 0.00 0.00 0.00 5.19
430 433 3.440173 GGAATCTTCGGAGTGAATGCAAA 59.560 43.478 0.00 0.00 35.63 3.68
442 445 0.392461 TTTCGGCTGGGAATCTTCGG 60.392 55.000 0.00 0.00 0.00 4.30
480 483 3.627577 GCGTGTCAACCATTATTCTCCAT 59.372 43.478 0.00 0.00 0.00 3.41
483 486 3.181510 GGTGCGTGTCAACCATTATTCTC 60.182 47.826 0.00 0.00 0.00 2.87
816 841 1.123077 AGATCTGCACGCTAATGGGA 58.877 50.000 0.00 0.00 0.00 4.37
862 887 4.343526 AGTGAGACTGCATAAATCCGATCT 59.656 41.667 0.00 0.00 0.00 2.75
984 1015 4.431131 ATTGCCGCCCAGTCCCAG 62.431 66.667 0.00 0.00 0.00 4.45
985 1016 4.738998 CATTGCCGCCCAGTCCCA 62.739 66.667 0.00 0.00 0.00 4.37
986 1017 4.740822 ACATTGCCGCCCAGTCCC 62.741 66.667 0.00 0.00 0.00 4.46
987 1018 3.134127 GACATTGCCGCCCAGTCC 61.134 66.667 0.00 0.00 0.00 3.85
988 1019 3.134127 GGACATTGCCGCCCAGTC 61.134 66.667 0.00 0.00 0.00 3.51
989 1020 3.925630 CTGGACATTGCCGCCCAGT 62.926 63.158 0.00 0.00 40.84 4.00
1158 1189 4.308458 TGGAACCACCTGTCGCGG 62.308 66.667 6.13 0.00 39.86 6.46
1666 1697 1.609580 GCCCACGTAGTTGGTGATCAA 60.610 52.381 0.00 0.00 46.15 2.57
2031 2062 1.708993 AACCTGCTGCTCCCTTGTCA 61.709 55.000 0.00 0.00 0.00 3.58
2450 2481 2.047830 ACTCCCTCCGTTCCATATTCC 58.952 52.381 0.00 0.00 0.00 3.01
2545 2576 0.396811 AAAGCCCGCACAGTAACTCT 59.603 50.000 0.00 0.00 0.00 3.24
2624 2655 5.149976 AGTATAAGGCCGAATACCCAGTAA 58.850 41.667 20.57 0.00 30.35 2.24
2677 2711 1.946984 ACCCTCACCGGTTATCAGAA 58.053 50.000 2.97 0.00 29.19 3.02
2682 2716 2.245806 ACTAGGTACCCTCACCGGTTAT 59.754 50.000 2.97 0.00 43.84 1.89
2688 2722 2.429971 GCTTGTACTAGGTACCCTCACC 59.570 54.545 8.74 0.00 38.14 4.02
2709 2743 5.986135 GTCTACTGGGCTGTATACTTGATTG 59.014 44.000 4.17 0.00 0.00 2.67
2747 2781 5.632347 CCTTTGCAATCTTCTTTGTGCTAAG 59.368 40.000 0.00 10.40 44.25 2.18
2867 2901 3.071457 TCTCCACTCACTGCAATTGAGAA 59.929 43.478 24.95 12.61 42.81 2.87
3194 3337 9.337091 CCCAAAATAAGTGTCGTTAATTTAGTG 57.663 33.333 0.00 0.00 0.00 2.74
3206 3349 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3351 3494 5.422214 AGGAGTACATAAGGGTGTTTCAG 57.578 43.478 0.00 0.00 33.62 3.02
3364 3507 9.221933 CGACTCTCATAAATAGTAGGAGTACAT 57.778 37.037 0.00 0.00 33.53 2.29
3365 3508 7.172875 GCGACTCTCATAAATAGTAGGAGTACA 59.827 40.741 0.00 0.00 33.53 2.90
3420 3563 5.465532 TTGAGCAGCCAAACAATATCAAA 57.534 34.783 0.00 0.00 0.00 2.69
3488 3631 2.027745 TGGTGAATCACAAGAGGAGAGC 60.028 50.000 15.86 0.00 35.86 4.09
3560 3703 0.984230 GTCTGGAGGTTGGTGGATCA 59.016 55.000 0.00 0.00 0.00 2.92
3634 3777 2.945668 ACTTGTGAGAACCAAAGAGCAC 59.054 45.455 0.00 0.00 0.00 4.40
3763 3906 7.502120 TTTGTCTAGATACGGATGTACCTAC 57.498 40.000 0.00 0.00 36.31 3.18
4007 4152 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
4013 4158 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
4014 4159 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
4015 4160 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
4016 4161 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
4017 4162 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
4026 4171 4.041762 TAAACAGGGGGCAGCCCG 62.042 66.667 25.18 13.45 46.66 6.13
4027 4172 2.362503 GTAAACAGGGGGCAGCCC 60.363 66.667 24.23 24.23 44.51 5.19
4028 4173 0.257616 TATGTAAACAGGGGGCAGCC 59.742 55.000 1.26 1.26 0.00 4.85
4029 4174 2.137810 TTATGTAAACAGGGGGCAGC 57.862 50.000 0.00 0.00 0.00 5.25
4030 4175 3.222603 GGATTATGTAAACAGGGGGCAG 58.777 50.000 0.00 0.00 0.00 4.85
4031 4176 2.583101 TGGATTATGTAAACAGGGGGCA 59.417 45.455 0.00 0.00 0.00 5.36
4032 4177 3.306472 TGGATTATGTAAACAGGGGGC 57.694 47.619 0.00 0.00 0.00 5.80
4033 4178 5.127031 CACTTTGGATTATGTAAACAGGGGG 59.873 44.000 0.00 0.00 0.00 5.40
4034 4179 5.127031 CCACTTTGGATTATGTAAACAGGGG 59.873 44.000 0.00 0.00 40.96 4.79
4035 4180 5.714806 ACCACTTTGGATTATGTAAACAGGG 59.285 40.000 0.00 0.00 40.96 4.45
4036 4181 6.403200 CGACCACTTTGGATTATGTAAACAGG 60.403 42.308 0.00 0.00 40.96 4.00
4037 4182 6.403200 CCGACCACTTTGGATTATGTAAACAG 60.403 42.308 0.00 0.00 40.96 3.16
4038 4183 5.413213 CCGACCACTTTGGATTATGTAAACA 59.587 40.000 0.00 0.00 40.96 2.83
4039 4184 5.644636 TCCGACCACTTTGGATTATGTAAAC 59.355 40.000 0.00 0.00 40.96 2.01
4040 4185 5.644636 GTCCGACCACTTTGGATTATGTAAA 59.355 40.000 0.00 0.00 40.96 2.01
4041 4186 5.180271 GTCCGACCACTTTGGATTATGTAA 58.820 41.667 0.00 0.00 40.96 2.41
4042 4187 4.383335 GGTCCGACCACTTTGGATTATGTA 60.383 45.833 13.05 0.00 40.96 2.29
4043 4188 3.606687 GTCCGACCACTTTGGATTATGT 58.393 45.455 0.00 0.00 40.96 2.29
4044 4189 2.943033 GGTCCGACCACTTTGGATTATG 59.057 50.000 13.05 0.00 40.96 1.90
4045 4190 2.092592 GGGTCCGACCACTTTGGATTAT 60.093 50.000 19.43 0.00 40.96 1.28
4046 4191 1.279846 GGGTCCGACCACTTTGGATTA 59.720 52.381 19.43 0.00 40.96 1.75
4047 4192 0.037734 GGGTCCGACCACTTTGGATT 59.962 55.000 19.43 0.00 40.96 3.01
4048 4193 0.840722 AGGGTCCGACCACTTTGGAT 60.841 55.000 19.43 0.00 40.96 3.41
4049 4194 1.057851 AAGGGTCCGACCACTTTGGA 61.058 55.000 19.43 0.00 40.96 3.53
4050 4195 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
4051 4196 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
4052 4197 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
4053 4198 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
4054 4199 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
4055 4200 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
4056 4201 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
4057 4202 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
4058 4203 1.687297 GATCTGGGGAAGGGTCCGAC 61.687 65.000 0.00 0.00 46.04 4.79
4059 4204 1.382695 GATCTGGGGAAGGGTCCGA 60.383 63.158 0.00 0.00 46.04 4.55
4060 4205 2.444256 GGATCTGGGGAAGGGTCCG 61.444 68.421 0.00 0.00 46.04 4.79
4061 4206 1.004891 AGGATCTGGGGAAGGGTCC 59.995 63.158 0.00 0.00 44.10 4.46
4062 4207 1.988982 GCAGGATCTGGGGAAGGGTC 61.989 65.000 0.00 0.00 31.21 4.46
4063 4208 2.003548 GCAGGATCTGGGGAAGGGT 61.004 63.158 0.00 0.00 31.21 4.34
4064 4209 2.002977 TGCAGGATCTGGGGAAGGG 61.003 63.158 0.00 0.00 31.21 3.95
4065 4210 1.225704 GTGCAGGATCTGGGGAAGG 59.774 63.158 0.00 0.00 31.21 3.46
4066 4211 0.329261 TTGTGCAGGATCTGGGGAAG 59.671 55.000 0.00 0.00 31.21 3.46
4067 4212 0.329261 CTTGTGCAGGATCTGGGGAA 59.671 55.000 0.00 0.00 31.21 3.97
4068 4213 1.993653 CTTGTGCAGGATCTGGGGA 59.006 57.895 0.00 0.00 31.21 4.81
4069 4214 1.751927 GCTTGTGCAGGATCTGGGG 60.752 63.158 0.00 0.00 39.41 4.96
4070 4215 2.110967 CGCTTGTGCAGGATCTGGG 61.111 63.158 0.00 0.00 39.64 4.45
4071 4216 2.110967 CCGCTTGTGCAGGATCTGG 61.111 63.158 0.00 0.00 39.64 3.86
4072 4217 2.110967 CCCGCTTGTGCAGGATCTG 61.111 63.158 0.00 0.00 39.03 2.90
4073 4218 2.249413 CTCCCGCTTGTGCAGGATCT 62.249 60.000 0.00 0.00 44.01 2.75
4074 4219 1.817099 CTCCCGCTTGTGCAGGATC 60.817 63.158 0.00 0.00 44.01 3.36
4075 4220 2.270205 CTCCCGCTTGTGCAGGAT 59.730 61.111 0.00 0.00 44.01 3.24
4076 4221 4.704833 GCTCCCGCTTGTGCAGGA 62.705 66.667 0.00 0.00 42.97 3.86
4077 4222 3.315142 TAGCTCCCGCTTGTGCAGG 62.315 63.158 0.00 0.00 46.47 4.85
4078 4223 2.103042 GTAGCTCCCGCTTGTGCAG 61.103 63.158 0.00 0.00 46.47 4.41
4079 4224 2.047274 GTAGCTCCCGCTTGTGCA 60.047 61.111 0.00 0.00 46.47 4.57
4080 4225 1.450312 ATGTAGCTCCCGCTTGTGC 60.450 57.895 0.00 0.00 46.47 4.57
4081 4226 1.709147 GCATGTAGCTCCCGCTTGTG 61.709 60.000 0.00 0.00 46.47 3.33
4082 4227 1.450312 GCATGTAGCTCCCGCTTGT 60.450 57.895 0.00 0.00 46.47 3.16
4083 4228 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
4116 4261 8.538039 GCTGACTAATTAACTGGATTACGTAAC 58.462 37.037 10.81 4.85 0.00 2.50
4121 4266 9.331282 AGAATGCTGACTAATTAACTGGATTAC 57.669 33.333 12.07 8.57 0.00 1.89
4489 4640 1.603739 GGGTCTGGCCAAGTGAACC 60.604 63.158 11.54 11.54 39.65 3.62
4570 4721 8.657074 AATGCTCATGGTCAATATTTCAAATG 57.343 30.769 0.00 0.00 0.00 2.32
4751 4903 3.574354 TCTACCATGCACATTGCCATA 57.426 42.857 0.00 0.00 44.23 2.74
4804 4959 7.593644 ACATTTTATGTGCGGAGTAAAAGAAAC 59.406 33.333 11.12 0.00 43.01 2.78
4806 4961 7.209471 ACATTTTATGTGCGGAGTAAAAGAA 57.791 32.000 11.12 0.00 43.01 2.52
4807 4962 6.811253 ACATTTTATGTGCGGAGTAAAAGA 57.189 33.333 11.12 0.00 43.01 2.52
4829 4989 6.520792 TTAGCGAAGTTTGACTTTAGACAC 57.479 37.500 0.00 0.00 38.80 3.67
5146 5306 9.465985 GTTCCTGAAATTCGGTAAAAATAAACA 57.534 29.630 0.73 0.00 0.00 2.83
5329 5489 9.892130 AAATAGAAGGACCTTTTGTACTATCAG 57.108 33.333 8.49 0.00 37.04 2.90
5399 5924 1.402787 GTACCCCTGGCCATTTCATG 58.597 55.000 5.51 0.00 0.00 3.07
5412 5937 1.032014 TAACTACATCGGCGTACCCC 58.968 55.000 6.85 0.00 0.00 4.95
5464 5992 3.237746 TGGCAGGATTTGTGGATTTTGA 58.762 40.909 0.00 0.00 0.00 2.69
5478 6006 2.121963 AGACAGGGGTTGGCAGGA 60.122 61.111 0.00 0.00 37.23 3.86
5544 6074 7.392673 GCCATATCTGTGTTCTTCCATATTGAT 59.607 37.037 0.00 0.00 0.00 2.57
5554 6084 7.629222 GCAATTGTTAGCCATATCTGTGTTCTT 60.629 37.037 7.40 0.00 0.00 2.52
5692 6225 8.105829 TGCAATGGTTGGGTTATTTTTATTCAT 58.894 29.630 0.00 0.00 0.00 2.57
5790 6323 8.044908 TGGTACACCATCTTTTATCCTAGAAAC 58.955 37.037 0.00 0.00 42.01 2.78
5821 6354 6.943718 CAGAAGTATTTAACAAACAGGGGGTA 59.056 38.462 0.00 0.00 0.00 3.69
5843 6376 1.588239 TAGGACGGAGGGAGTACAGA 58.412 55.000 0.00 0.00 0.00 3.41
5844 6377 2.431954 TTAGGACGGAGGGAGTACAG 57.568 55.000 0.00 0.00 0.00 2.74
5845 6378 2.905415 TTTAGGACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
5846 6379 5.362143 ACTTATTTTAGGACGGAGGGAGTAC 59.638 44.000 0.00 0.00 0.00 2.73
5847 6380 5.361857 CACTTATTTTAGGACGGAGGGAGTA 59.638 44.000 0.00 0.00 0.00 2.59
5905 6438 9.226606 CCCAAAATAAGTGTCTCAACATTAGTA 57.773 33.333 0.00 0.00 37.81 1.82
5906 6439 7.942341 TCCCAAAATAAGTGTCTCAACATTAGT 59.058 33.333 0.00 0.00 37.81 2.24
5907 6440 8.237267 GTCCCAAAATAAGTGTCTCAACATTAG 58.763 37.037 0.00 0.00 37.81 1.73
5908 6441 7.094975 CGTCCCAAAATAAGTGTCTCAACATTA 60.095 37.037 0.00 0.00 37.81 1.90
5909 6442 6.293955 CGTCCCAAAATAAGTGTCTCAACATT 60.294 38.462 0.00 0.00 37.81 2.71
5910 6443 5.181245 CGTCCCAAAATAAGTGTCTCAACAT 59.819 40.000 0.00 0.00 37.81 2.71
5911 6444 4.513692 CGTCCCAAAATAAGTGTCTCAACA 59.486 41.667 0.00 0.00 0.00 3.33
5918 6451 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
5921 6454 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5922 6455 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5931 6464 2.416680 ACAGTAGTACTCCCTCCGTC 57.583 55.000 0.00 0.00 0.00 4.79
5944 6477 5.515797 TTGCATAGCCAGTAGTACAGTAG 57.484 43.478 2.52 0.00 0.00 2.57
6160 6694 8.663911 CAATAATACAACGGCCAATGAAATTTT 58.336 29.630 11.51 4.12 31.22 1.82
6201 6735 8.617809 TGTTCCTTTTCGTAAGGCATATAATTC 58.382 33.333 12.37 0.00 37.34 2.17
6335 6871 6.109359 ACCAGAGAAACAGCTATATGACAAC 58.891 40.000 0.00 0.00 0.00 3.32
6681 7220 8.171164 AGTTAAGAGAAACAAGGAAAGAATGG 57.829 34.615 0.00 0.00 0.00 3.16
6729 7268 1.180029 GCATGGCCTGTTCTGTCATT 58.820 50.000 3.32 0.00 0.00 2.57
6730 7269 0.330604 AGCATGGCCTGTTCTGTCAT 59.669 50.000 3.32 0.00 0.00 3.06
6731 7270 0.607217 CAGCATGGCCTGTTCTGTCA 60.607 55.000 3.32 0.00 0.00 3.58
6771 7311 6.418523 TCAGTTATATATACACAAACGCACCG 59.581 38.462 0.00 0.00 0.00 4.94
6774 7314 9.535878 TTCATCAGTTATATATACACAAACGCA 57.464 29.630 0.00 0.00 0.00 5.24
6898 7438 3.053693 ACAAGAGCATATAAACAGGGGCA 60.054 43.478 0.00 0.00 0.00 5.36
6902 7442 7.604164 CCAGGTATACAAGAGCATATAAACAGG 59.396 40.741 5.01 0.00 0.00 4.00
6970 7510 2.772189 CGCAAGCAGCACTACGTC 59.228 61.111 0.00 0.00 46.13 4.34
6982 7522 1.269810 CATACGTACGCAGCGCAAG 59.730 57.895 16.61 7.13 43.44 4.01
7051 7591 5.757886 TCAAGTGCAAGCAATACTTAACAC 58.242 37.500 0.00 0.00 41.58 3.32
7130 7670 2.163412 TCTAACAACGCATGCAAATCCC 59.837 45.455 19.57 0.00 0.00 3.85
7163 7704 4.494484 TCATTATCAGACACACGAACCAG 58.506 43.478 0.00 0.00 0.00 4.00
7352 7901 3.057174 GGAAAATGGGTGCACACGATTTA 60.057 43.478 21.72 4.50 0.00 1.40
7496 8046 2.205307 ACCGTCTTGCTATAAGCGAC 57.795 50.000 0.00 0.00 46.26 5.19
7561 8111 2.692041 GCTGCTCTAGAATGGGCAAATT 59.308 45.455 5.95 0.00 34.21 1.82
7566 8116 2.250237 GCGCTGCTCTAGAATGGGC 61.250 63.158 0.00 10.79 0.00 5.36
7568 8118 0.179089 ACAGCGCTGCTCTAGAATGG 60.179 55.000 36.28 9.45 36.40 3.16
7570 8120 2.801342 GCTAACAGCGCTGCTCTAGAAT 60.801 50.000 36.28 12.43 36.40 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.