Multiple sequence alignment - TraesCS2B01G404200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G404200 chr2B 100.000 3819 0 0 1 3819 572314958 572311140 0.000000e+00 7053.0
1 TraesCS2B01G404200 chr2B 85.847 2268 213 53 1202 3430 572179514 572177316 0.000000e+00 2311.0
2 TraesCS2B01G404200 chr2B 86.538 936 77 26 2315 3226 571347307 571348217 0.000000e+00 985.0
3 TraesCS2B01G404200 chr2B 83.181 1094 109 41 1181 2218 571346148 571347222 0.000000e+00 931.0
4 TraesCS2B01G404200 chr2B 88.914 442 36 9 668 1100 571345669 571346106 2.020000e-147 532.0
5 TraesCS2B01G404200 chr2B 95.312 320 11 1 351 670 571345258 571345573 4.400000e-139 505.0
6 TraesCS2B01G404200 chr2B 86.697 436 33 13 667 1100 572180000 572179588 9.670000e-126 460.0
7 TraesCS2B01G404200 chr2B 84.211 304 32 7 2985 3279 82961420 82961124 8.080000e-72 281.0
8 TraesCS2B01G404200 chr2B 92.941 170 9 2 3457 3623 312294490 312294659 1.060000e-60 244.0
9 TraesCS2B01G404200 chr2B 91.908 173 8 5 3453 3619 478189810 478189638 1.770000e-58 237.0
10 TraesCS2B01G404200 chr2B 89.474 152 10 3 671 822 572325897 572325752 1.810000e-43 187.0
11 TraesCS2B01G404200 chr2D 90.276 2828 167 45 668 3444 487934725 487931955 0.000000e+00 3600.0
12 TraesCS2B01G404200 chr2D 85.549 2076 175 56 1202 3226 486390982 486392983 0.000000e+00 2056.0
13 TraesCS2B01G404200 chr2D 85.256 1994 170 56 1202 3160 487724704 487722800 0.000000e+00 1940.0
14 TraesCS2B01G404200 chr2D 85.152 1246 126 27 1183 2404 487593965 487592755 0.000000e+00 1221.0
15 TraesCS2B01G404200 chr2D 87.126 435 38 12 667 1100 487725195 487724778 9.600000e-131 477.0
16 TraesCS2B01G404200 chr2D 87.327 434 30 11 668 1100 486390499 486390908 1.240000e-129 473.0
17 TraesCS2B01G404200 chr2D 89.241 316 21 4 351 666 486390077 486390379 2.150000e-102 383.0
18 TraesCS2B01G404200 chr2D 83.611 360 41 11 742 1100 487594355 487594013 4.760000e-84 322.0
19 TraesCS2B01G404200 chr2D 87.719 285 21 8 395 670 487935097 487934818 1.710000e-83 320.0
20 TraesCS2B01G404200 chr2D 95.050 202 10 0 3618 3819 487931913 487931712 6.160000e-83 318.0
21 TraesCS2B01G404200 chr2D 78.893 488 58 18 2579 3063 488056263 488055818 4.830000e-74 289.0
22 TraesCS2B01G404200 chr2D 83.819 309 25 12 1 302 487935437 487935147 1.750000e-68 270.0
23 TraesCS2B01G404200 chr2D 89.604 202 16 3 907 1105 488058856 488058657 6.330000e-63 252.0
24 TraesCS2B01G404200 chr2D 86.822 129 12 1 28 156 486389999 486390122 5.140000e-29 139.0
25 TraesCS2B01G404200 chr2D 85.393 89 8 5 583 668 488059615 488059529 1.890000e-13 87.9
26 TraesCS2B01G404200 chr2A 84.212 2730 255 86 668 3276 631855222 631857896 0.000000e+00 2492.0
27 TraesCS2B01G404200 chr2A 89.554 1570 103 38 1878 3426 632588115 632586586 0.000000e+00 1934.0
28 TraesCS2B01G404200 chr2A 90.843 1245 67 16 668 1874 632589430 632588195 0.000000e+00 1624.0
29 TraesCS2B01G404200 chr2A 82.316 1114 138 28 1914 2994 46336674 46337761 0.000000e+00 911.0
30 TraesCS2B01G404200 chr2A 90.060 332 16 6 351 670 631854797 631855123 7.630000e-112 414.0
31 TraesCS2B01G404200 chr2A 86.458 288 17 14 399 670 632589795 632589514 2.880000e-76 296.0
32 TraesCS2B01G404200 chr2A 78.758 499 62 23 2567 3060 632592599 632592140 1.040000e-75 294.0
33 TraesCS2B01G404200 chr2A 90.863 197 14 3 3624 3819 632585760 632585567 1.050000e-65 261.0
34 TraesCS2B01G404200 chr2A 90.000 200 16 2 908 1105 632595498 632595301 4.900000e-64 255.0
35 TraesCS2B01G404200 chr2A 87.192 203 20 4 92 292 632590038 632589840 3.840000e-55 226.0
36 TraesCS2B01G404200 chr2A 82.819 227 34 5 1131 1354 632595219 632594995 8.370000e-47 198.0
37 TraesCS2B01G404200 chr2A 87.597 129 10 2 28 156 631854720 631854842 1.110000e-30 145.0
38 TraesCS2B01G404200 chr2A 85.000 80 7 4 584 661 632596477 632596401 4.090000e-10 76.8
39 TraesCS2B01G404200 chr7D 82.496 1114 138 27 1914 2994 446551195 446550106 0.000000e+00 924.0
40 TraesCS2B01G404200 chr7D 84.652 417 42 15 1449 1854 446551622 446551217 2.760000e-106 396.0
41 TraesCS2B01G404200 chr3D 82.245 873 103 25 2154 2994 16449279 16450131 0.000000e+00 706.0
42 TraesCS2B01G404200 chr3D 91.329 173 11 3 3451 3620 397162536 397162707 2.290000e-57 233.0
43 TraesCS2B01G404200 chr3D 90.503 179 11 4 3452 3625 507038752 507038575 8.250000e-57 231.0
44 TraesCS2B01G404200 chr7A 82.198 837 96 21 1914 2722 321636676 321635865 0.000000e+00 671.0
45 TraesCS2B01G404200 chr4A 84.746 413 46 13 1449 1852 729645106 729644702 7.690000e-107 398.0
46 TraesCS2B01G404200 chr4A 91.765 170 10 3 3454 3619 729701862 729702031 2.290000e-57 233.0
47 TraesCS2B01G404200 chr6A 82.960 446 44 18 2851 3279 226334905 226334475 1.300000e-99 374.0
48 TraesCS2B01G404200 chr6A 87.000 200 21 5 3624 3819 226334296 226334098 1.790000e-53 220.0
49 TraesCS2B01G404200 chrUn 82.630 403 47 8 2247 2628 40175609 40175209 6.110000e-88 335.0
50 TraesCS2B01G404200 chr5D 92.899 169 9 3 3454 3619 334801463 334801295 3.810000e-60 243.0
51 TraesCS2B01G404200 chr5D 92.771 166 9 2 3457 3619 151671544 151671709 1.770000e-58 237.0
52 TraesCS2B01G404200 chr3B 93.333 165 8 2 3460 3621 79116950 79117114 1.370000e-59 241.0
53 TraesCS2B01G404200 chr1A 92.771 166 8 3 3457 3619 254348912 254349076 1.770000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G404200 chr2B 572311140 572314958 3818 True 7053.000000 7053 100.000000 1 3819 1 chr2B.!!$R3 3818
1 TraesCS2B01G404200 chr2B 572177316 572180000 2684 True 1385.500000 2311 86.272000 667 3430 2 chr2B.!!$R5 2763
2 TraesCS2B01G404200 chr2B 571345258 571348217 2959 False 738.250000 985 88.486250 351 3226 4 chr2B.!!$F2 2875
3 TraesCS2B01G404200 chr2D 487722800 487725195 2395 True 1208.500000 1940 86.191000 667 3160 2 chr2D.!!$R2 2493
4 TraesCS2B01G404200 chr2D 487931712 487935437 3725 True 1127.000000 3600 89.216000 1 3819 4 chr2D.!!$R3 3818
5 TraesCS2B01G404200 chr2D 487592755 487594355 1600 True 771.500000 1221 84.381500 742 2404 2 chr2D.!!$R1 1662
6 TraesCS2B01G404200 chr2D 486389999 486392983 2984 False 762.750000 2056 87.234750 28 3226 4 chr2D.!!$F1 3198
7 TraesCS2B01G404200 chr2D 488055818 488059615 3797 True 209.633333 289 84.630000 583 3063 3 chr2D.!!$R4 2480
8 TraesCS2B01G404200 chr2A 631854720 631857896 3176 False 1017.000000 2492 87.289667 28 3276 3 chr2A.!!$F2 3248
9 TraesCS2B01G404200 chr2A 46336674 46337761 1087 False 911.000000 911 82.316000 1914 2994 1 chr2A.!!$F1 1080
10 TraesCS2B01G404200 chr2A 632585567 632596477 10910 True 573.866667 1934 86.831889 92 3819 9 chr2A.!!$R1 3727
11 TraesCS2B01G404200 chr7D 446550106 446551622 1516 True 660.000000 924 83.574000 1449 2994 2 chr7D.!!$R1 1545
12 TraesCS2B01G404200 chr3D 16449279 16450131 852 False 706.000000 706 82.245000 2154 2994 1 chr3D.!!$F1 840
13 TraesCS2B01G404200 chr7A 321635865 321636676 811 True 671.000000 671 82.198000 1914 2722 1 chr7A.!!$R1 808
14 TraesCS2B01G404200 chr6A 226334098 226334905 807 True 297.000000 374 84.980000 2851 3819 2 chr6A.!!$R1 968

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 6677 0.032017 ACTCTACGGCCCTCTTCCAT 60.032 55.0 0.0 0.0 0.00 3.41 F
323 6679 0.261991 TCTACGGCCCTCTTCCATCT 59.738 55.0 0.0 0.0 0.00 2.90 F
811 7515 0.384669 GCTACGAGAACTACCGGCAT 59.615 55.0 0.0 0.0 0.00 4.40 F
1269 8477 0.395862 TCTTGGGGAACAAAACCGCA 60.396 50.0 0.0 0.0 45.94 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 9791 0.601558 TTCACCACCTCGTACTGCTC 59.398 55.000 0.0 0.0 0.00 4.26 R
2166 10038 3.367087 GCATCTCTTTGCTTGATTGCACT 60.367 43.478 0.0 0.0 43.20 4.40 R
2628 10939 0.391130 GAACACTCGCACCTGGCATA 60.391 55.000 0.0 0.0 45.17 3.14 R
2819 11136 1.005037 TGTACTTCAGTGCAGCGGG 60.005 57.895 0.0 0.0 35.76 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 4.607325 TCCGCGCGATGGATGCAT 62.607 61.111 34.63 0.00 0.00 3.96
80 82 1.233285 GCGATGGATGCATCTGGGAC 61.233 60.000 25.28 9.59 0.00 4.46
81 83 0.395686 CGATGGATGCATCTGGGACT 59.604 55.000 25.28 5.00 0.00 3.85
82 84 1.876837 CGATGGATGCATCTGGGACTG 60.877 57.143 25.28 3.93 0.00 3.51
83 85 0.477204 ATGGATGCATCTGGGACTGG 59.523 55.000 25.28 0.00 0.00 4.00
85 87 1.348008 GGATGCATCTGGGACTGGGA 61.348 60.000 25.28 0.00 0.00 4.37
89 91 1.692042 CATCTGGGACTGGGAGGCT 60.692 63.158 0.00 0.00 0.00 4.58
90 92 1.692042 ATCTGGGACTGGGAGGCTG 60.692 63.158 0.00 0.00 0.00 4.85
143 6492 3.573491 GGTGCTAACCGCCATCGC 61.573 66.667 0.00 0.00 43.83 4.58
144 6493 3.573491 GTGCTAACCGCCATCGCC 61.573 66.667 0.00 0.00 38.05 5.54
167 6516 2.671070 CCAGTGGCCAGTGGGTAG 59.329 66.667 41.58 22.70 45.90 3.18
168 6517 2.224159 CCAGTGGCCAGTGGGTAGT 61.224 63.158 41.58 5.03 45.90 2.73
171 6520 0.850784 AGTGGCCAGTGGGTAGTTTT 59.149 50.000 13.75 0.00 36.17 2.43
182 6531 4.018415 AGTGGGTAGTTTTGCACATCCTAT 60.018 41.667 0.00 0.00 0.00 2.57
183 6532 4.705023 GTGGGTAGTTTTGCACATCCTATT 59.295 41.667 0.00 0.00 0.00 1.73
187 6536 6.811665 GGGTAGTTTTGCACATCCTATTTTTC 59.188 38.462 0.00 0.00 0.00 2.29
188 6537 7.375053 GGTAGTTTTGCACATCCTATTTTTCA 58.625 34.615 0.00 0.00 0.00 2.69
189 6538 8.034804 GGTAGTTTTGCACATCCTATTTTTCAT 58.965 33.333 0.00 0.00 0.00 2.57
193 6542 9.949174 GTTTTGCACATCCTATTTTTCATTTTT 57.051 25.926 0.00 0.00 0.00 1.94
194 6543 9.947669 TTTTGCACATCCTATTTTTCATTTTTG 57.052 25.926 0.00 0.00 0.00 2.44
195 6544 7.670009 TGCACATCCTATTTTTCATTTTTGG 57.330 32.000 0.00 0.00 0.00 3.28
197 6546 6.672836 GCACATCCTATTTTTCATTTTTGGCG 60.673 38.462 0.00 0.00 0.00 5.69
198 6547 5.874261 ACATCCTATTTTTCATTTTTGGCGG 59.126 36.000 0.00 0.00 0.00 6.13
199 6548 5.476091 TCCTATTTTTCATTTTTGGCGGT 57.524 34.783 0.00 0.00 0.00 5.68
200 6549 5.233988 TCCTATTTTTCATTTTTGGCGGTG 58.766 37.500 0.00 0.00 0.00 4.94
202 6551 5.698545 CCTATTTTTCATTTTTGGCGGTGAA 59.301 36.000 0.00 0.00 0.00 3.18
243 6599 1.996191 GTTGATCACGCTTCTCTGTCC 59.004 52.381 0.00 0.00 0.00 4.02
282 6638 0.792640 AGCTGCGTCATGAAGAAACG 59.207 50.000 13.18 6.17 39.33 3.60
283 6639 0.790207 GCTGCGTCATGAAGAAACGA 59.210 50.000 13.18 0.00 38.65 3.85
285 6641 2.785681 GCTGCGTCATGAAGAAACGATG 60.786 50.000 13.18 3.11 38.65 3.84
302 6658 3.755628 GGCGTGCGAGGGTCTACA 61.756 66.667 0.00 0.00 0.00 2.74
304 6660 2.991076 GCGTGCGAGGGTCTACACT 61.991 63.158 0.00 0.00 0.00 3.55
306 6662 1.306642 CGTGCGAGGGTCTACACTCT 61.307 60.000 10.49 0.00 44.07 3.24
307 6663 1.747709 GTGCGAGGGTCTACACTCTA 58.252 55.000 10.49 0.00 44.07 2.43
308 6664 1.401199 GTGCGAGGGTCTACACTCTAC 59.599 57.143 10.49 5.97 44.07 2.59
309 6665 0.656785 GCGAGGGTCTACACTCTACG 59.343 60.000 10.49 0.00 44.07 3.51
310 6666 1.297664 CGAGGGTCTACACTCTACGG 58.702 60.000 10.49 0.00 44.07 4.02
311 6667 1.023502 GAGGGTCTACACTCTACGGC 58.976 60.000 5.09 0.00 42.97 5.68
312 6668 0.395448 AGGGTCTACACTCTACGGCC 60.395 60.000 0.00 0.00 28.00 6.13
313 6669 1.390383 GGGTCTACACTCTACGGCCC 61.390 65.000 0.00 0.00 0.00 5.80
314 6670 0.395448 GGTCTACACTCTACGGCCCT 60.395 60.000 0.00 0.00 0.00 5.19
315 6671 1.023502 GTCTACACTCTACGGCCCTC 58.976 60.000 0.00 0.00 0.00 4.30
316 6672 0.917533 TCTACACTCTACGGCCCTCT 59.082 55.000 0.00 0.00 0.00 3.69
317 6673 1.284198 TCTACACTCTACGGCCCTCTT 59.716 52.381 0.00 0.00 0.00 2.85
318 6674 1.677052 CTACACTCTACGGCCCTCTTC 59.323 57.143 0.00 0.00 0.00 2.87
319 6675 0.971447 ACACTCTACGGCCCTCTTCC 60.971 60.000 0.00 0.00 0.00 3.46
320 6676 0.970937 CACTCTACGGCCCTCTTCCA 60.971 60.000 0.00 0.00 0.00 3.53
321 6677 0.032017 ACTCTACGGCCCTCTTCCAT 60.032 55.000 0.00 0.00 0.00 3.41
322 6678 0.676736 CTCTACGGCCCTCTTCCATC 59.323 60.000 0.00 0.00 0.00 3.51
323 6679 0.261991 TCTACGGCCCTCTTCCATCT 59.738 55.000 0.00 0.00 0.00 2.90
324 6680 1.123928 CTACGGCCCTCTTCCATCTT 58.876 55.000 0.00 0.00 0.00 2.40
325 6681 2.091499 TCTACGGCCCTCTTCCATCTTA 60.091 50.000 0.00 0.00 0.00 2.10
326 6682 0.831307 ACGGCCCTCTTCCATCTTAC 59.169 55.000 0.00 0.00 0.00 2.34
327 6683 1.123928 CGGCCCTCTTCCATCTTACT 58.876 55.000 0.00 0.00 0.00 2.24
328 6684 1.486726 CGGCCCTCTTCCATCTTACTT 59.513 52.381 0.00 0.00 0.00 2.24
329 6685 2.483889 CGGCCCTCTTCCATCTTACTTC 60.484 54.545 0.00 0.00 0.00 3.01
330 6686 2.774809 GGCCCTCTTCCATCTTACTTCT 59.225 50.000 0.00 0.00 0.00 2.85
331 6687 3.181459 GGCCCTCTTCCATCTTACTTCTC 60.181 52.174 0.00 0.00 0.00 2.87
332 6688 3.709141 GCCCTCTTCCATCTTACTTCTCT 59.291 47.826 0.00 0.00 0.00 3.10
333 6689 4.202212 GCCCTCTTCCATCTTACTTCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
334 6690 4.343814 CCCTCTTCCATCTTACTTCTCTCC 59.656 50.000 0.00 0.00 0.00 3.71
343 6699 4.764491 TCTTACTTCTCTCCCCTTTCCTT 58.236 43.478 0.00 0.00 0.00 3.36
348 6704 6.470456 ACTTCTCTCCCCTTTCCTTTTATT 57.530 37.500 0.00 0.00 0.00 1.40
448 6982 1.472878 GGCAGGTTAGCAAGTTTAGGC 59.527 52.381 0.00 0.00 35.83 3.93
449 6983 1.130561 GCAGGTTAGCAAGTTTAGGCG 59.869 52.381 0.00 0.00 34.54 5.52
450 6984 1.737793 CAGGTTAGCAAGTTTAGGCGG 59.262 52.381 0.00 0.00 34.54 6.13
451 6985 0.450583 GGTTAGCAAGTTTAGGCGGC 59.549 55.000 0.00 0.00 34.54 6.53
580 7133 0.820871 GATCGCACTTCACTCCCTCT 59.179 55.000 0.00 0.00 0.00 3.69
811 7515 0.384669 GCTACGAGAACTACCGGCAT 59.615 55.000 0.00 0.00 0.00 4.40
845 7875 1.134965 AGTCCTCAATGCAGCTCGTAC 60.135 52.381 0.00 0.00 0.00 3.67
865 7906 8.986477 TCGTACATCATTCATTCACTATATGG 57.014 34.615 0.00 0.00 0.00 2.74
879 7920 5.893255 TCACTATATGGAAATTTTGCCAGCT 59.107 36.000 5.03 0.00 37.64 4.24
887 7930 4.516321 GGAAATTTTGCCAGCTTGTCAAAT 59.484 37.500 7.76 1.19 30.89 2.32
1077 8143 4.273318 ACCATCCTAAAGGCAAAGATGTC 58.727 43.478 0.00 0.00 33.95 3.06
1145 8332 7.624360 ACAAGAGTGTTGTTTGATGTAAAGA 57.376 32.000 0.00 0.00 32.58 2.52
1146 8333 8.050778 ACAAGAGTGTTGTTTGATGTAAAGAA 57.949 30.769 0.00 0.00 32.58 2.52
1147 8334 8.686334 ACAAGAGTGTTGTTTGATGTAAAGAAT 58.314 29.630 0.00 0.00 34.53 2.40
1148 8335 8.961092 CAAGAGTGTTGTTTGATGTAAAGAATG 58.039 33.333 0.00 0.00 34.53 2.67
1149 8336 7.141363 AGAGTGTTGTTTGATGTAAAGAATGC 58.859 34.615 0.00 0.00 34.53 3.56
1150 8337 6.804677 AGTGTTGTTTGATGTAAAGAATGCA 58.195 32.000 0.00 0.00 34.53 3.96
1151 8338 7.436118 AGTGTTGTTTGATGTAAAGAATGCAT 58.564 30.769 0.00 0.00 34.53 3.96
1152 8339 7.383029 AGTGTTGTTTGATGTAAAGAATGCATG 59.617 33.333 0.00 0.00 34.53 4.06
1153 8340 6.645827 TGTTGTTTGATGTAAAGAATGCATGG 59.354 34.615 0.00 0.00 34.53 3.66
1154 8341 5.170021 TGTTTGATGTAAAGAATGCATGGC 58.830 37.500 0.00 0.00 34.17 4.40
1155 8342 3.696281 TGATGTAAAGAATGCATGGCG 57.304 42.857 0.00 0.00 34.17 5.69
1156 8343 3.016031 TGATGTAAAGAATGCATGGCGT 58.984 40.909 0.00 0.00 34.17 5.68
1197 8405 6.506500 ACCAATGACTGATGATCAACTTTC 57.493 37.500 0.00 0.00 0.00 2.62
1199 8407 6.373774 ACCAATGACTGATGATCAACTTTCTC 59.626 38.462 0.00 0.00 0.00 2.87
1269 8477 0.395862 TCTTGGGGAACAAAACCGCA 60.396 50.000 0.00 0.00 45.94 5.69
1387 8606 5.769662 ACATGCATAATCCCACATAAACGAT 59.230 36.000 0.00 0.00 0.00 3.73
1392 8611 4.900635 AATCCCACATAAACGATCTTGC 57.099 40.909 0.00 0.00 0.00 4.01
1462 8690 5.390387 TCAAACTTTTAGGTATGCCCAACT 58.610 37.500 0.00 0.00 34.66 3.16
1463 8691 5.475564 TCAAACTTTTAGGTATGCCCAACTC 59.524 40.000 0.00 0.00 34.66 3.01
1959 9761 6.037500 TCGATCCTGATTAATTTGCAGTGAAG 59.962 38.462 0.00 0.00 0.00 3.02
1989 9791 6.455646 CGATCTAAAGAACGAAACCATCAAGG 60.456 42.308 3.81 0.00 41.91 3.61
2166 10038 1.987807 GCCTATGCCCAGCCTGAAGA 61.988 60.000 0.00 0.00 0.00 2.87
2235 10415 8.442374 AGAAGGTAACAAAAATCCCACTTAGTA 58.558 33.333 0.00 0.00 41.41 1.82
2236 10416 8.631480 AAGGTAACAAAAATCCCACTTAGTAG 57.369 34.615 0.00 0.00 41.41 2.57
2237 10417 7.981142 AGGTAACAAAAATCCCACTTAGTAGA 58.019 34.615 0.00 0.00 41.41 2.59
2238 10418 8.612145 AGGTAACAAAAATCCCACTTAGTAGAT 58.388 33.333 0.00 0.00 41.41 1.98
2239 10419 8.674607 GGTAACAAAAATCCCACTTAGTAGATG 58.325 37.037 0.00 0.00 0.00 2.90
2240 10420 6.759497 ACAAAAATCCCACTTAGTAGATGC 57.241 37.500 0.00 0.00 0.00 3.91
2241 10421 5.652452 ACAAAAATCCCACTTAGTAGATGCC 59.348 40.000 0.00 0.00 0.00 4.40
2242 10422 3.753294 AATCCCACTTAGTAGATGCCG 57.247 47.619 0.00 0.00 0.00 5.69
2304 10507 9.651913 AAGTTTCATGTGTTTTGTTTTCACTAT 57.348 25.926 0.00 0.00 33.82 2.12
2560 10781 4.151689 ACGATGGTGAGTGTAACATTTTCG 59.848 41.667 0.00 0.00 41.43 3.46
2565 10811 6.747125 TGGTGAGTGTAACATTTTCGTACTA 58.253 36.000 0.00 0.00 41.43 1.82
2570 10879 7.385478 TGAGTGTAACATTTTCGTACTATGCAA 59.615 33.333 0.00 0.00 41.43 4.08
2571 10880 7.515643 AGTGTAACATTTTCGTACTATGCAAC 58.484 34.615 0.00 0.00 41.43 4.17
2573 10882 7.267600 GTGTAACATTTTCGTACTATGCAACAC 59.732 37.037 0.00 0.00 36.32 3.32
2574 10883 5.291293 ACATTTTCGTACTATGCAACACC 57.709 39.130 0.00 0.00 0.00 4.16
2575 10884 4.155280 ACATTTTCGTACTATGCAACACCC 59.845 41.667 0.00 0.00 0.00 4.61
2576 10885 3.688694 TTTCGTACTATGCAACACCCT 57.311 42.857 0.00 0.00 0.00 4.34
2577 10886 2.665649 TCGTACTATGCAACACCCTG 57.334 50.000 0.00 0.00 0.00 4.45
2578 10887 1.006832 CGTACTATGCAACACCCTGC 58.993 55.000 0.00 0.00 42.95 4.85
2614 10924 5.316167 TCCGGTTGAACTTACTCTGTAGTA 58.684 41.667 0.00 0.00 37.15 1.82
2628 10939 5.835819 ACTCTGTAGTATGTACTGATGCCAT 59.164 40.000 3.00 0.00 37.10 4.40
2629 10946 7.004691 ACTCTGTAGTATGTACTGATGCCATA 58.995 38.462 3.00 0.00 37.10 2.74
2831 11155 4.007644 CCTGACCCGCTGCACTGA 62.008 66.667 0.00 0.00 0.00 3.41
2832 11156 2.031012 CTGACCCGCTGCACTGAA 59.969 61.111 0.00 0.00 0.00 3.02
2833 11157 2.031012 TGACCCGCTGCACTGAAG 59.969 61.111 0.00 0.00 0.00 3.02
2834 11158 2.031163 GACCCGCTGCACTGAAGT 59.969 61.111 0.00 0.00 0.00 3.01
2835 11159 1.292223 GACCCGCTGCACTGAAGTA 59.708 57.895 0.00 0.00 0.00 2.24
2859 11201 1.826385 ACATGGGAGCAGTAGCAAAC 58.174 50.000 0.00 0.00 45.49 2.93
2867 11209 1.790387 CAGTAGCAAACGCTCCAGC 59.210 57.895 0.00 0.00 41.09 4.85
2949 11311 1.029681 AAGAAGAAACCGCCCAACAC 58.970 50.000 0.00 0.00 0.00 3.32
2981 11345 1.669265 GGCGTTGGGTTAATCAGTAGC 59.331 52.381 0.00 0.00 0.00 3.58
3003 11376 3.186817 CGTATGGTCGTGCCTTTGTAAAA 59.813 43.478 1.06 0.00 38.35 1.52
3023 11396 8.386606 TGTAAAACAAATTTGACTGCAATCAAC 58.613 29.630 24.64 0.00 38.31 3.18
3064 11441 3.963665 TGTAGCAAAAGTGTGTGAATGC 58.036 40.909 0.00 0.00 0.00 3.56
3086 11472 1.456296 TTGCATGACAGTGCCATCTC 58.544 50.000 0.00 0.00 44.43 2.75
3133 11521 4.400251 ACAGTGCCATCTGATTTGGTAATG 59.600 41.667 12.26 12.26 46.16 1.90
3136 11524 4.887071 GTGCCATCTGATTTGGTAATGGTA 59.113 41.667 0.00 0.00 39.27 3.25
3137 11525 5.359576 GTGCCATCTGATTTGGTAATGGTAA 59.640 40.000 0.00 0.00 39.27 2.85
3138 11526 6.040842 GTGCCATCTGATTTGGTAATGGTAAT 59.959 38.462 0.00 0.00 39.27 1.89
3192 11588 6.094048 CCAAAACTGATGACCCATTGTAGTAG 59.906 42.308 0.00 0.00 0.00 2.57
3299 11719 2.846206 TCCCTTGATGCTAGTGTGGATT 59.154 45.455 0.00 0.00 0.00 3.01
3359 11780 4.381612 CCAGTATGCGAGAACTGAAGGTTA 60.382 45.833 11.61 0.00 44.79 2.85
3367 11788 3.942115 GAGAACTGAAGGTTATTCCAGGC 59.058 47.826 0.00 0.00 38.41 4.85
3376 11797 1.334869 GTTATTCCAGGCGGCAATCTG 59.665 52.381 13.08 0.00 0.00 2.90
3378 11799 0.034186 ATTCCAGGCGGCAATCTGAA 60.034 50.000 13.08 6.44 33.11 3.02
3379 11800 0.960364 TTCCAGGCGGCAATCTGAAC 60.960 55.000 13.08 0.00 33.11 3.18
3380 11801 1.377725 CCAGGCGGCAATCTGAACT 60.378 57.895 13.08 0.00 33.11 3.01
3384 11805 2.289002 CAGGCGGCAATCTGAACTAATC 59.711 50.000 13.08 0.00 33.11 1.75
3430 11852 4.576463 AGTTTTCAGCAGGTTAGTGACTTG 59.424 41.667 0.00 0.00 38.32 3.16
3449 11871 5.477510 ACTTGCTTCTTCAGACTCATAGTG 58.522 41.667 0.00 0.00 0.00 2.74
3452 11874 5.955488 TGCTTCTTCAGACTCATAGTGTAC 58.045 41.667 0.00 0.00 0.00 2.90
3454 11876 6.033341 GCTTCTTCAGACTCATAGTGTACTG 58.967 44.000 0.00 0.00 0.00 2.74
3457 11879 8.631480 TTCTTCAGACTCATAGTGTACTGTAA 57.369 34.615 0.00 0.00 0.00 2.41
3458 11880 8.809468 TCTTCAGACTCATAGTGTACTGTAAT 57.191 34.615 0.00 0.00 0.00 1.89
3466 11888 9.517868 ACTCATAGTGTACTGTAATATACTCCC 57.482 37.037 0.00 0.00 30.16 4.30
3468 11890 9.736414 TCATAGTGTACTGTAATATACTCCCTC 57.264 37.037 0.00 0.00 30.16 4.30
3469 11891 8.958506 CATAGTGTACTGTAATATACTCCCTCC 58.041 40.741 0.00 0.00 30.16 4.30
3472 11894 6.264067 GTGTACTGTAATATACTCCCTCCGTT 59.736 42.308 0.00 0.00 0.00 4.44
3473 11895 6.835488 TGTACTGTAATATACTCCCTCCGTTT 59.165 38.462 0.00 0.00 0.00 3.60
3474 11896 6.402456 ACTGTAATATACTCCCTCCGTTTC 57.598 41.667 0.00 0.00 0.00 2.78
3475 11897 6.134754 ACTGTAATATACTCCCTCCGTTTCT 58.865 40.000 0.00 0.00 0.00 2.52
3484 11906 5.975282 ACTCCCTCCGTTTCTAAATAAGTC 58.025 41.667 0.00 0.00 0.00 3.01
3485 11907 5.720520 ACTCCCTCCGTTTCTAAATAAGTCT 59.279 40.000 0.00 0.00 0.00 3.24
3486 11908 6.212993 ACTCCCTCCGTTTCTAAATAAGTCTT 59.787 38.462 0.00 0.00 0.00 3.01
3487 11909 7.012661 TCCCTCCGTTTCTAAATAAGTCTTT 57.987 36.000 0.00 0.00 0.00 2.52
3489 11911 6.093633 CCCTCCGTTTCTAAATAAGTCTTTGG 59.906 42.308 0.00 0.00 0.00 3.28
3490 11912 6.877322 CCTCCGTTTCTAAATAAGTCTTTGGA 59.123 38.462 0.00 0.00 0.00 3.53
3491 11913 7.064728 CCTCCGTTTCTAAATAAGTCTTTGGAG 59.935 40.741 0.00 0.00 37.18 3.86
3492 11914 7.673180 TCCGTTTCTAAATAAGTCTTTGGAGA 58.327 34.615 0.00 0.00 28.99 3.71
3493 11915 7.817962 TCCGTTTCTAAATAAGTCTTTGGAGAG 59.182 37.037 0.00 0.00 31.07 3.20
3494 11916 7.817962 CCGTTTCTAAATAAGTCTTTGGAGAGA 59.182 37.037 0.00 0.00 31.07 3.10
3495 11917 9.372369 CGTTTCTAAATAAGTCTTTGGAGAGAT 57.628 33.333 0.00 0.00 31.07 2.75
3506 11928 8.380742 AGTCTTTGGAGAGATTTTACTATGGA 57.619 34.615 0.00 0.00 31.07 3.41
3509 11931 6.884472 TTGGAGAGATTTTACTATGGACCA 57.116 37.500 0.00 0.00 0.00 4.02
3510 11932 6.235231 TGGAGAGATTTTACTATGGACCAC 57.765 41.667 0.00 0.00 0.00 4.16
3515 11937 7.434492 AGAGATTTTACTATGGACCACATACG 58.566 38.462 0.00 0.00 41.03 3.06
3516 11938 6.522054 AGATTTTACTATGGACCACATACGG 58.478 40.000 0.00 0.00 41.03 4.02
3518 11940 5.524971 TTTACTATGGACCACATACGGAG 57.475 43.478 0.00 0.00 41.03 4.63
3519 11941 1.687123 ACTATGGACCACATACGGAGC 59.313 52.381 0.00 0.00 41.03 4.70
3520 11942 1.686587 CTATGGACCACATACGGAGCA 59.313 52.381 0.00 0.00 41.03 4.26
3521 11943 0.908910 ATGGACCACATACGGAGCAA 59.091 50.000 0.00 0.00 38.26 3.91
3524 11946 2.290641 TGGACCACATACGGAGCAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
3525 11947 2.097466 GGACCACATACGGAGCAAAATG 59.903 50.000 0.00 0.00 0.00 2.32
3527 11949 3.417101 ACCACATACGGAGCAAAATGAA 58.583 40.909 0.00 0.00 0.00 2.57
3528 11950 4.016444 ACCACATACGGAGCAAAATGAAT 58.984 39.130 0.00 0.00 0.00 2.57
3529 11951 4.142403 ACCACATACGGAGCAAAATGAATG 60.142 41.667 0.00 0.00 0.00 2.67
3534 12615 8.077991 CACATACGGAGCAAAATGAATGAATAT 58.922 33.333 0.00 0.00 0.00 1.28
3563 12644 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
3564 12645 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
3569 12650 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
3570 12651 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
3572 12653 6.918569 GCATCTATATACATCCGTATGTGGTC 59.081 42.308 3.56 0.00 45.99 4.02
3575 12656 7.123383 TCTATATACATCCGTATGTGGTCCAT 58.877 38.462 3.56 0.00 45.99 3.41
3576 12657 8.276477 TCTATATACATCCGTATGTGGTCCATA 58.724 37.037 3.56 0.00 45.99 2.74
3578 12659 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
3579 12660 3.069586 ACATCCGTATGTGGTCCATAGTG 59.930 47.826 0.00 0.00 44.79 2.74
3580 12661 3.021177 TCCGTATGTGGTCCATAGTGA 57.979 47.619 0.00 0.00 36.71 3.41
3582 12663 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
3583 12664 4.407621 TCCGTATGTGGTCCATAGTGAAAT 59.592 41.667 0.00 0.00 36.71 2.17
3585 12666 5.453339 CCGTATGTGGTCCATAGTGAAATCT 60.453 44.000 0.00 0.00 36.71 2.40
3586 12667 5.692204 CGTATGTGGTCCATAGTGAAATCTC 59.308 44.000 0.00 0.00 36.71 2.75
3588 12669 5.497464 TGTGGTCCATAGTGAAATCTCAA 57.503 39.130 0.00 0.00 31.88 3.02
3589 12670 5.245531 TGTGGTCCATAGTGAAATCTCAAC 58.754 41.667 0.00 0.00 31.88 3.18
3590 12671 5.221823 TGTGGTCCATAGTGAAATCTCAACA 60.222 40.000 0.00 0.00 31.88 3.33
3593 12674 6.430925 TGGTCCATAGTGAAATCTCAACAAAG 59.569 38.462 0.00 0.00 31.88 2.77
3594 12675 6.655003 GGTCCATAGTGAAATCTCAACAAAGA 59.345 38.462 0.00 0.00 31.88 2.52
3595 12676 7.361286 GGTCCATAGTGAAATCTCAACAAAGAC 60.361 40.741 0.00 0.00 31.88 3.01
3596 12677 7.389053 GTCCATAGTGAAATCTCAACAAAGACT 59.611 37.037 0.00 0.00 31.88 3.24
3598 12679 9.219603 CCATAGTGAAATCTCAACAAAGACTTA 57.780 33.333 0.00 0.00 31.88 2.24
3608 12689 9.606631 ATCTCAACAAAGACTTATATTCAGGAC 57.393 33.333 0.00 0.00 0.00 3.85
3609 12690 7.759886 TCTCAACAAAGACTTATATTCAGGACG 59.240 37.037 0.00 0.00 0.00 4.79
3610 12691 6.816640 TCAACAAAGACTTATATTCAGGACGG 59.183 38.462 0.00 0.00 0.00 4.79
3611 12692 6.540438 ACAAAGACTTATATTCAGGACGGA 57.460 37.500 0.00 0.00 0.00 4.69
3612 12693 6.574350 ACAAAGACTTATATTCAGGACGGAG 58.426 40.000 0.00 0.00 0.00 4.63
3613 12694 5.793030 AAGACTTATATTCAGGACGGAGG 57.207 43.478 0.00 0.00 0.00 4.30
3614 12695 4.153411 AGACTTATATTCAGGACGGAGGG 58.847 47.826 0.00 0.00 0.00 4.30
3615 12696 4.140994 AGACTTATATTCAGGACGGAGGGA 60.141 45.833 0.00 0.00 0.00 4.20
3616 12697 4.153411 ACTTATATTCAGGACGGAGGGAG 58.847 47.826 0.00 0.00 0.00 4.30
3788 12871 7.168302 ACGTCATCTTGCGAATAATCTTCTTAG 59.832 37.037 0.00 0.00 0.00 2.18
3791 12874 6.834959 TCTTGCGAATAATCTTCTTAGCAG 57.165 37.500 0.00 0.00 35.06 4.24
3812 12896 4.023707 CAGCAAAAGAAAACCAGACGATCT 60.024 41.667 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 2.284921 CAGCCTCCCAGTCCCAGA 60.285 66.667 0.00 0.00 0.00 3.86
82 84 4.299796 TGGTTTGGGCAGCCTCCC 62.300 66.667 12.43 6.82 46.73 4.30
83 85 2.991540 GTGGTTTGGGCAGCCTCC 60.992 66.667 12.43 9.68 0.00 4.30
85 87 4.974721 CCGTGGTTTGGGCAGCCT 62.975 66.667 12.43 0.00 0.00 4.58
89 91 3.884774 AGCTCCGTGGTTTGGGCA 61.885 61.111 0.00 0.00 0.00 5.36
90 92 3.365265 CAGCTCCGTGGTTTGGGC 61.365 66.667 0.00 0.00 0.00 5.36
115 6464 2.032894 CGGTTAGCACCATGAATTAGCG 60.033 50.000 0.00 0.00 44.53 4.26
150 6499 1.779061 AACTACCCACTGGCCACTGG 61.779 60.000 21.29 21.29 33.59 4.00
151 6500 0.110486 AAACTACCCACTGGCCACTG 59.890 55.000 0.00 2.66 33.59 3.66
152 6501 0.850784 AAAACTACCCACTGGCCACT 59.149 50.000 0.00 0.00 33.59 4.00
153 6502 0.958822 CAAAACTACCCACTGGCCAC 59.041 55.000 0.00 0.00 33.59 5.01
154 6503 0.825840 GCAAAACTACCCACTGGCCA 60.826 55.000 4.71 4.71 33.59 5.36
155 6504 0.825840 TGCAAAACTACCCACTGGCC 60.826 55.000 0.00 0.00 33.59 5.36
156 6505 0.313987 GTGCAAAACTACCCACTGGC 59.686 55.000 0.00 0.00 33.59 4.85
157 6506 1.686355 TGTGCAAAACTACCCACTGG 58.314 50.000 0.00 0.00 37.80 4.00
158 6507 2.228822 GGATGTGCAAAACTACCCACTG 59.771 50.000 0.00 0.00 0.00 3.66
159 6508 2.108250 AGGATGTGCAAAACTACCCACT 59.892 45.455 0.00 0.00 0.00 4.00
160 6509 2.514803 AGGATGTGCAAAACTACCCAC 58.485 47.619 0.00 0.00 0.00 4.61
161 6510 2.969821 AGGATGTGCAAAACTACCCA 57.030 45.000 0.00 0.00 0.00 4.51
162 6511 5.914898 AAATAGGATGTGCAAAACTACCC 57.085 39.130 0.00 0.00 0.00 3.69
163 6512 7.375053 TGAAAAATAGGATGTGCAAAACTACC 58.625 34.615 0.00 0.00 0.00 3.18
164 6513 8.986477 ATGAAAAATAGGATGTGCAAAACTAC 57.014 30.769 0.00 0.00 0.00 2.73
165 6514 9.995003 AAATGAAAAATAGGATGTGCAAAACTA 57.005 25.926 0.00 0.00 0.00 2.24
166 6515 8.907222 AAATGAAAAATAGGATGTGCAAAACT 57.093 26.923 0.00 0.00 0.00 2.66
167 6516 9.949174 AAAAATGAAAAATAGGATGTGCAAAAC 57.051 25.926 0.00 0.00 0.00 2.43
168 6517 9.947669 CAAAAATGAAAAATAGGATGTGCAAAA 57.052 25.926 0.00 0.00 0.00 2.44
171 6520 6.149142 GCCAAAAATGAAAAATAGGATGTGCA 59.851 34.615 0.00 0.00 0.00 4.57
182 6531 4.508662 AGTTCACCGCCAAAAATGAAAAA 58.491 34.783 0.00 0.00 33.09 1.94
183 6532 4.116238 GAGTTCACCGCCAAAAATGAAAA 58.884 39.130 0.00 0.00 33.09 2.29
187 6536 1.665735 CGGAGTTCACCGCCAAAAATG 60.666 52.381 0.00 0.00 46.20 2.32
188 6537 0.596082 CGGAGTTCACCGCCAAAAAT 59.404 50.000 0.00 0.00 46.20 1.82
189 6538 2.026522 CGGAGTTCACCGCCAAAAA 58.973 52.632 0.00 0.00 46.20 1.94
235 6591 2.928036 TGATGGAAGGAGGACAGAGA 57.072 50.000 0.00 0.00 0.00 3.10
243 6599 3.930848 GCTTTTGCAAATGATGGAAGGAG 59.069 43.478 24.70 11.49 46.58 3.69
269 6625 2.442189 CGCCATCGTTTCTTCATGAC 57.558 50.000 0.00 0.00 0.00 3.06
282 6638 2.782222 TAGACCCTCGCACGCCATC 61.782 63.158 0.00 0.00 0.00 3.51
283 6639 2.758327 TAGACCCTCGCACGCCAT 60.758 61.111 0.00 0.00 0.00 4.40
285 6641 3.755628 TGTAGACCCTCGCACGCC 61.756 66.667 0.00 0.00 0.00 5.68
302 6658 0.032017 ATGGAAGAGGGCCGTAGAGT 60.032 55.000 0.00 0.00 0.00 3.24
304 6660 0.261991 AGATGGAAGAGGGCCGTAGA 59.738 55.000 0.00 0.00 0.00 2.59
306 6662 2.037144 GTAAGATGGAAGAGGGCCGTA 58.963 52.381 0.00 0.00 0.00 4.02
307 6663 0.831307 GTAAGATGGAAGAGGGCCGT 59.169 55.000 0.00 0.00 0.00 5.68
308 6664 1.123928 AGTAAGATGGAAGAGGGCCG 58.876 55.000 0.00 0.00 0.00 6.13
309 6665 2.774809 AGAAGTAAGATGGAAGAGGGCC 59.225 50.000 0.00 0.00 0.00 5.80
310 6666 3.709141 AGAGAAGTAAGATGGAAGAGGGC 59.291 47.826 0.00 0.00 0.00 5.19
311 6667 4.343814 GGAGAGAAGTAAGATGGAAGAGGG 59.656 50.000 0.00 0.00 0.00 4.30
312 6668 4.343814 GGGAGAGAAGTAAGATGGAAGAGG 59.656 50.000 0.00 0.00 0.00 3.69
313 6669 4.343814 GGGGAGAGAAGTAAGATGGAAGAG 59.656 50.000 0.00 0.00 0.00 2.85
314 6670 4.016105 AGGGGAGAGAAGTAAGATGGAAGA 60.016 45.833 0.00 0.00 0.00 2.87
315 6671 4.294347 AGGGGAGAGAAGTAAGATGGAAG 58.706 47.826 0.00 0.00 0.00 3.46
316 6672 4.354208 AGGGGAGAGAAGTAAGATGGAA 57.646 45.455 0.00 0.00 0.00 3.53
317 6673 4.354208 AAGGGGAGAGAAGTAAGATGGA 57.646 45.455 0.00 0.00 0.00 3.41
318 6674 4.141597 GGAAAGGGGAGAGAAGTAAGATGG 60.142 50.000 0.00 0.00 0.00 3.51
319 6675 4.719273 AGGAAAGGGGAGAGAAGTAAGATG 59.281 45.833 0.00 0.00 0.00 2.90
320 6676 4.966611 AGGAAAGGGGAGAGAAGTAAGAT 58.033 43.478 0.00 0.00 0.00 2.40
321 6677 4.421574 AGGAAAGGGGAGAGAAGTAAGA 57.578 45.455 0.00 0.00 0.00 2.10
322 6678 5.506730 AAAGGAAAGGGGAGAGAAGTAAG 57.493 43.478 0.00 0.00 0.00 2.34
323 6679 5.924769 AAAAGGAAAGGGGAGAGAAGTAA 57.075 39.130 0.00 0.00 0.00 2.24
324 6680 7.584396 AATAAAAGGAAAGGGGAGAGAAGTA 57.416 36.000 0.00 0.00 0.00 2.24
325 6681 6.470456 AATAAAAGGAAAGGGGAGAGAAGT 57.530 37.500 0.00 0.00 0.00 3.01
326 6682 7.442666 CGATAATAAAAGGAAAGGGGAGAGAAG 59.557 40.741 0.00 0.00 0.00 2.85
327 6683 7.092578 ACGATAATAAAAGGAAAGGGGAGAGAA 60.093 37.037 0.00 0.00 0.00 2.87
328 6684 6.386050 ACGATAATAAAAGGAAAGGGGAGAGA 59.614 38.462 0.00 0.00 0.00 3.10
329 6685 6.592870 ACGATAATAAAAGGAAAGGGGAGAG 58.407 40.000 0.00 0.00 0.00 3.20
330 6686 6.408891 GGACGATAATAAAAGGAAAGGGGAGA 60.409 42.308 0.00 0.00 0.00 3.71
331 6687 5.763698 GGACGATAATAAAAGGAAAGGGGAG 59.236 44.000 0.00 0.00 0.00 4.30
332 6688 5.685599 CGGACGATAATAAAAGGAAAGGGGA 60.686 44.000 0.00 0.00 0.00 4.81
333 6689 4.514066 CGGACGATAATAAAAGGAAAGGGG 59.486 45.833 0.00 0.00 0.00 4.79
334 6690 4.024302 GCGGACGATAATAAAAGGAAAGGG 60.024 45.833 0.00 0.00 0.00 3.95
343 6699 7.148869 CGTGATGAATTAGCGGACGATAATAAA 60.149 37.037 14.48 7.46 35.92 1.40
348 6704 3.561503 CGTGATGAATTAGCGGACGATA 58.438 45.455 0.00 0.00 0.00 2.92
432 6965 0.450583 GCCGCCTAAACTTGCTAACC 59.549 55.000 0.00 0.00 0.00 2.85
433 6966 0.450583 GGCCGCCTAAACTTGCTAAC 59.549 55.000 0.71 0.00 0.00 2.34
448 6982 2.908073 GCTTCATAATGCCCGGCCG 61.908 63.158 21.04 21.04 0.00 6.13
449 6983 2.564721 GGCTTCATAATGCCCGGCC 61.565 63.158 7.03 0.00 43.11 6.13
450 6984 3.042560 GGCTTCATAATGCCCGGC 58.957 61.111 1.04 1.04 43.11 6.13
811 7515 0.693622 AGGACTCTCGTCTCACCTGA 59.306 55.000 0.00 0.00 40.10 3.86
874 7915 4.037208 ACTCACAGAAATTTGACAAGCTGG 59.963 41.667 0.00 0.00 0.00 4.85
879 7920 5.342433 CAAGCACTCACAGAAATTTGACAA 58.658 37.500 0.00 0.00 0.00 3.18
887 7930 2.615447 CAAGAGCAAGCACTCACAGAAA 59.385 45.455 4.51 0.00 39.26 2.52
1133 8320 4.082300 ACGCCATGCATTCTTTACATCAAA 60.082 37.500 0.00 0.00 0.00 2.69
1136 8323 3.698029 ACGCCATGCATTCTTTACATC 57.302 42.857 0.00 0.00 0.00 3.06
1138 8325 2.556189 ACAACGCCATGCATTCTTTACA 59.444 40.909 0.00 0.00 0.00 2.41
1139 8326 3.216147 ACAACGCCATGCATTCTTTAC 57.784 42.857 0.00 0.00 0.00 2.01
1143 8330 2.358898 GGAATACAACGCCATGCATTCT 59.641 45.455 0.00 0.00 34.74 2.40
1144 8331 2.358898 AGGAATACAACGCCATGCATTC 59.641 45.455 0.00 0.00 33.95 2.67
1145 8332 2.378038 AGGAATACAACGCCATGCATT 58.622 42.857 0.00 0.00 0.00 3.56
1146 8333 2.057137 AGGAATACAACGCCATGCAT 57.943 45.000 0.00 0.00 0.00 3.96
1147 8334 2.700722 TAGGAATACAACGCCATGCA 57.299 45.000 0.00 0.00 0.00 3.96
1148 8335 4.568152 ATTTAGGAATACAACGCCATGC 57.432 40.909 0.00 0.00 0.00 4.06
1149 8336 5.299279 AGGAATTTAGGAATACAACGCCATG 59.701 40.000 0.00 0.00 0.00 3.66
1150 8337 5.445964 AGGAATTTAGGAATACAACGCCAT 58.554 37.500 0.00 0.00 0.00 4.40
1151 8338 4.850680 AGGAATTTAGGAATACAACGCCA 58.149 39.130 0.00 0.00 0.00 5.69
1152 8339 5.237996 GGTAGGAATTTAGGAATACAACGCC 59.762 44.000 0.00 0.00 0.00 5.68
1153 8340 5.818857 TGGTAGGAATTTAGGAATACAACGC 59.181 40.000 0.00 0.00 0.00 4.84
1154 8341 7.852971 TTGGTAGGAATTTAGGAATACAACG 57.147 36.000 0.00 0.00 0.00 4.10
1155 8342 9.403583 TCATTGGTAGGAATTTAGGAATACAAC 57.596 33.333 0.00 0.00 0.00 3.32
1156 8343 9.403583 GTCATTGGTAGGAATTTAGGAATACAA 57.596 33.333 0.00 0.00 0.00 2.41
1197 8405 2.029828 GTCACCAGTGTAGTCCTGTGAG 60.030 54.545 0.00 0.00 0.00 3.51
1199 8407 1.000955 GGTCACCAGTGTAGTCCTGTG 59.999 57.143 0.00 0.00 0.00 3.66
1269 8477 1.302907 TCCTACTCCCTCCGGTAACT 58.697 55.000 0.00 0.00 0.00 2.24
1387 8606 7.674120 ACATATATATCAGCTGAACTGCAAGA 58.326 34.615 22.50 1.97 46.76 3.02
1407 8626 9.613428 TTAGCTGAGTTATAGTGCAAAACATAT 57.387 29.630 0.00 0.00 0.00 1.78
1408 8627 8.879759 GTTAGCTGAGTTATAGTGCAAAACATA 58.120 33.333 0.00 0.00 0.00 2.29
1409 8628 7.607991 AGTTAGCTGAGTTATAGTGCAAAACAT 59.392 33.333 0.00 0.00 0.00 2.71
1443 8667 4.332828 GTGAGTTGGGCATACCTAAAAGT 58.667 43.478 0.00 0.00 38.29 2.66
1462 8690 3.056179 TCGTCAGCATAAACATCTGGTGA 60.056 43.478 0.00 0.70 44.91 4.02
1463 8691 3.062639 GTCGTCAGCATAAACATCTGGTG 59.937 47.826 0.00 0.00 41.13 4.17
1583 8835 4.380531 AGCATACATACCGTTCCAGATTG 58.619 43.478 0.00 0.00 0.00 2.67
1590 8842 4.270325 GGACTCAAAGCATACATACCGTTC 59.730 45.833 0.00 0.00 0.00 3.95
1959 9761 4.201599 GGTTTCGTTCTTTAGATCGTGAGC 60.202 45.833 9.32 6.24 38.15 4.26
1965 9767 6.594159 TCCTTGATGGTTTCGTTCTTTAGATC 59.406 38.462 0.00 0.00 37.07 2.75
1989 9791 0.601558 TTCACCACCTCGTACTGCTC 59.398 55.000 0.00 0.00 0.00 4.26
2166 10038 3.367087 GCATCTCTTTGCTTGATTGCACT 60.367 43.478 0.00 0.00 43.20 4.40
2235 10415 5.536538 TGAACTAGACAAGATATCGGCATCT 59.463 40.000 0.00 2.57 36.83 2.90
2236 10416 5.773575 TGAACTAGACAAGATATCGGCATC 58.226 41.667 0.00 0.00 0.00 3.91
2237 10417 5.791336 TGAACTAGACAAGATATCGGCAT 57.209 39.130 0.00 0.00 0.00 4.40
2238 10418 5.536538 AGATGAACTAGACAAGATATCGGCA 59.463 40.000 0.00 0.00 0.00 5.69
2239 10419 6.019779 AGATGAACTAGACAAGATATCGGC 57.980 41.667 0.00 0.00 0.00 5.54
2240 10420 7.881142 AGAAGATGAACTAGACAAGATATCGG 58.119 38.462 0.00 0.00 0.00 4.18
2241 10421 8.783093 AGAGAAGATGAACTAGACAAGATATCG 58.217 37.037 0.00 0.00 0.00 2.92
2242 10422 9.897744 CAGAGAAGATGAACTAGACAAGATATC 57.102 37.037 0.00 0.00 0.00 1.63
2322 10543 5.164954 ACTTCTCATACTGAAAGCGAGAAC 58.835 41.667 0.00 0.00 40.15 3.01
2455 10676 2.513897 GGCCCCTTGTCGAATCCG 60.514 66.667 0.00 0.00 37.07 4.18
2570 10879 0.839946 ACAGAAAGAGTGCAGGGTGT 59.160 50.000 0.00 0.00 0.00 4.16
2571 10880 1.972872 AACAGAAAGAGTGCAGGGTG 58.027 50.000 0.00 0.00 0.00 4.61
2573 10882 1.882623 GGAAACAGAAAGAGTGCAGGG 59.117 52.381 0.00 0.00 0.00 4.45
2574 10883 1.532868 CGGAAACAGAAAGAGTGCAGG 59.467 52.381 0.00 0.00 0.00 4.85
2575 10884 1.532868 CCGGAAACAGAAAGAGTGCAG 59.467 52.381 0.00 0.00 0.00 4.41
2576 10885 1.134220 ACCGGAAACAGAAAGAGTGCA 60.134 47.619 9.46 0.00 0.00 4.57
2577 10886 1.594331 ACCGGAAACAGAAAGAGTGC 58.406 50.000 9.46 0.00 0.00 4.40
2578 10887 3.202906 TCAACCGGAAACAGAAAGAGTG 58.797 45.455 9.46 0.00 0.00 3.51
2579 10888 3.553828 TCAACCGGAAACAGAAAGAGT 57.446 42.857 9.46 0.00 0.00 3.24
2614 10924 3.793819 TGGCATATGGCATCAGTACAT 57.206 42.857 26.67 0.00 46.12 2.29
2628 10939 0.391130 GAACACTCGCACCTGGCATA 60.391 55.000 0.00 0.00 45.17 3.14
2629 10946 1.672356 GAACACTCGCACCTGGCAT 60.672 57.895 0.00 0.00 45.17 4.40
2669 10986 1.128692 GTGTTTCATGCCGTACTGAGC 59.871 52.381 0.00 0.00 0.00 4.26
2819 11136 1.005037 TGTACTTCAGTGCAGCGGG 60.005 57.895 0.00 0.00 35.76 6.13
2831 11155 3.173965 ACTGCTCCCATGTACTGTACTT 58.826 45.455 17.98 9.72 0.00 2.24
2832 11156 2.821437 ACTGCTCCCATGTACTGTACT 58.179 47.619 17.98 2.36 0.00 2.73
2833 11157 3.491104 GCTACTGCTCCCATGTACTGTAC 60.491 52.174 10.98 10.98 36.03 2.90
2834 11158 2.693591 GCTACTGCTCCCATGTACTGTA 59.306 50.000 0.00 0.00 36.03 2.74
2835 11159 1.482593 GCTACTGCTCCCATGTACTGT 59.517 52.381 0.00 0.00 36.03 3.55
2867 11209 9.725019 ATATATGAGATCTAGCTAGGAATCTCG 57.275 37.037 29.36 6.90 37.83 4.04
2871 11213 9.365906 CACCATATATGAGATCTAGCTAGGAAT 57.634 37.037 20.58 7.77 0.00 3.01
2981 11345 1.999048 TACAAAGGCACGACCATACG 58.001 50.000 0.00 0.00 43.14 3.06
3003 11376 5.904941 TCAGTTGATTGCAGTCAAATTTGT 58.095 33.333 24.21 6.27 39.61 2.83
3023 11396 8.570488 TGCTACATAATAATCATTGCCTTTCAG 58.430 33.333 0.00 0.00 0.00 3.02
3094 11482 5.126869 TGGCACTGTCAAGAATTCTTCAAAA 59.873 36.000 17.91 4.03 33.11 2.44
3098 11486 4.699257 AGATGGCACTGTCAAGAATTCTTC 59.301 41.667 17.91 8.67 33.11 2.87
3099 11487 4.458295 CAGATGGCACTGTCAAGAATTCTT 59.542 41.667 15.11 15.11 33.49 2.52
3105 11493 3.708403 AATCAGATGGCACTGTCAAGA 57.292 42.857 14.00 1.91 38.79 3.02
3133 11521 9.686683 ATCATGGCTCACCTATTTATTATTACC 57.313 33.333 0.00 0.00 36.63 2.85
3138 11526 9.725019 CACTAATCATGGCTCACCTATTTATTA 57.275 33.333 0.00 0.00 36.63 0.98
3145 11536 3.388024 GTCCACTAATCATGGCTCACCTA 59.612 47.826 0.00 0.00 37.13 3.08
3192 11588 2.599677 CCTGTAGGAGGATCACTACCC 58.400 57.143 14.86 1.68 46.33 3.69
3299 11719 1.256895 CGAACGACTTGCGAAAGACAA 59.743 47.619 11.02 0.00 44.57 3.18
3335 11756 2.093973 CCTTCAGTTCTCGCATACTGGT 60.094 50.000 0.00 0.00 41.58 4.00
3359 11780 0.034186 TTCAGATTGCCGCCTGGAAT 60.034 50.000 0.00 0.00 37.49 3.01
3367 11788 6.912591 GGTTAATTGATTAGTTCAGATTGCCG 59.087 38.462 0.00 0.00 35.27 5.69
3378 11799 9.407380 TGTATCAATGCAGGTTAATTGATTAGT 57.593 29.630 14.33 0.00 46.43 2.24
3379 11800 9.669353 GTGTATCAATGCAGGTTAATTGATTAG 57.331 33.333 14.33 0.00 46.43 1.73
3380 11801 8.629158 GGTGTATCAATGCAGGTTAATTGATTA 58.371 33.333 14.33 4.40 46.43 1.75
3384 11805 6.127647 ACTGGTGTATCAATGCAGGTTAATTG 60.128 38.462 0.00 0.00 35.52 2.32
3430 11852 6.033341 CAGTACACTATGAGTCTGAAGAAGC 58.967 44.000 0.00 0.00 0.00 3.86
3431 11853 7.151999 ACAGTACACTATGAGTCTGAAGAAG 57.848 40.000 0.00 0.00 0.00 2.85
3449 11871 6.890979 AACGGAGGGAGTATATTACAGTAC 57.109 41.667 0.00 0.00 0.00 2.73
3452 11874 6.651975 AGAAACGGAGGGAGTATATTACAG 57.348 41.667 0.00 0.00 0.00 2.74
3457 11879 9.377238 ACTTATTTAGAAACGGAGGGAGTATAT 57.623 33.333 0.00 0.00 0.00 0.86
3458 11880 8.773033 ACTTATTTAGAAACGGAGGGAGTATA 57.227 34.615 0.00 0.00 0.00 1.47
3460 11882 6.894103 AGACTTATTTAGAAACGGAGGGAGTA 59.106 38.462 0.00 0.00 0.00 2.59
3461 11883 5.720520 AGACTTATTTAGAAACGGAGGGAGT 59.279 40.000 0.00 0.00 0.00 3.85
3463 11885 6.616237 AAGACTTATTTAGAAACGGAGGGA 57.384 37.500 0.00 0.00 0.00 4.20
3466 11888 7.817962 TCTCCAAAGACTTATTTAGAAACGGAG 59.182 37.037 0.00 0.00 0.00 4.63
3468 11890 7.817962 TCTCTCCAAAGACTTATTTAGAAACGG 59.182 37.037 0.00 0.00 0.00 4.44
3469 11891 8.758633 TCTCTCCAAAGACTTATTTAGAAACG 57.241 34.615 0.00 0.00 0.00 3.60
3482 11904 7.496263 GGTCCATAGTAAAATCTCTCCAAAGAC 59.504 40.741 0.00 0.00 0.00 3.01
3484 11906 7.281100 GTGGTCCATAGTAAAATCTCTCCAAAG 59.719 40.741 0.00 0.00 0.00 2.77
3485 11907 7.110155 GTGGTCCATAGTAAAATCTCTCCAAA 58.890 38.462 0.00 0.00 0.00 3.28
3486 11908 6.214615 TGTGGTCCATAGTAAAATCTCTCCAA 59.785 38.462 0.00 0.00 0.00 3.53
3487 11909 5.724370 TGTGGTCCATAGTAAAATCTCTCCA 59.276 40.000 0.00 0.00 0.00 3.86
3489 11911 7.595502 CGTATGTGGTCCATAGTAAAATCTCTC 59.404 40.741 0.00 0.00 36.71 3.20
3490 11912 7.434492 CGTATGTGGTCCATAGTAAAATCTCT 58.566 38.462 0.00 0.00 36.71 3.10
3491 11913 6.645415 CCGTATGTGGTCCATAGTAAAATCTC 59.355 42.308 0.00 0.00 36.71 2.75
3492 11914 6.325545 TCCGTATGTGGTCCATAGTAAAATCT 59.674 38.462 0.00 0.00 36.71 2.40
3493 11915 6.518493 TCCGTATGTGGTCCATAGTAAAATC 58.482 40.000 0.00 0.00 36.71 2.17
3494 11916 6.488769 TCCGTATGTGGTCCATAGTAAAAT 57.511 37.500 0.00 0.00 36.71 1.82
3495 11917 5.682990 GCTCCGTATGTGGTCCATAGTAAAA 60.683 44.000 0.00 0.00 36.71 1.52
3496 11918 4.202182 GCTCCGTATGTGGTCCATAGTAAA 60.202 45.833 0.00 0.00 36.71 2.01
3498 11920 2.889045 GCTCCGTATGTGGTCCATAGTA 59.111 50.000 0.00 0.00 36.71 1.82
3499 11921 1.687123 GCTCCGTATGTGGTCCATAGT 59.313 52.381 0.00 0.00 36.71 2.12
3500 11922 1.686587 TGCTCCGTATGTGGTCCATAG 59.313 52.381 0.00 0.00 36.71 2.23
3501 11923 1.783071 TGCTCCGTATGTGGTCCATA 58.217 50.000 0.00 0.00 34.86 2.74
3502 11924 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41
3503 11925 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
3504 11926 1.816074 TTTTGCTCCGTATGTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
3506 11928 3.066291 TCATTTTGCTCCGTATGTGGT 57.934 42.857 0.00 0.00 0.00 4.16
3509 11931 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
3537 12618 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
3538 12619 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
3548 12629 7.068226 TGGACCACATACGGATGTATATAGATG 59.932 40.741 14.23 0.00 44.82 2.90
3551 12632 6.769134 TGGACCACATACGGATGTATATAG 57.231 41.667 14.23 0.00 44.82 1.31
3553 12634 6.895756 ACTATGGACCACATACGGATGTATAT 59.104 38.462 14.23 1.16 44.82 0.86
3556 12637 4.279922 CACTATGGACCACATACGGATGTA 59.720 45.833 14.23 0.00 44.82 2.29
3560 12641 3.021177 TCACTATGGACCACATACGGA 57.979 47.619 0.00 0.00 41.03 4.69
3561 12642 3.812156 TTCACTATGGACCACATACGG 57.188 47.619 0.00 0.00 41.03 4.02
3562 12643 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
3563 12644 6.582636 TGAGATTTCACTATGGACCACATAC 58.417 40.000 0.00 0.00 41.03 2.39
3564 12645 6.806668 TGAGATTTCACTATGGACCACATA 57.193 37.500 0.00 0.00 41.03 2.29
3565 12646 5.698741 TGAGATTTCACTATGGACCACAT 57.301 39.130 0.00 0.00 43.68 3.21
3566 12647 5.221823 TGTTGAGATTTCACTATGGACCACA 60.222 40.000 0.00 0.00 31.71 4.17
3567 12648 5.245531 TGTTGAGATTTCACTATGGACCAC 58.754 41.667 0.00 0.00 31.71 4.16
3568 12649 5.497464 TGTTGAGATTTCACTATGGACCA 57.503 39.130 0.00 0.00 31.71 4.02
3569 12650 6.655003 TCTTTGTTGAGATTTCACTATGGACC 59.345 38.462 0.00 0.00 31.71 4.46
3570 12651 7.389053 AGTCTTTGTTGAGATTTCACTATGGAC 59.611 37.037 0.00 0.00 31.71 4.02
3572 12653 7.678947 AGTCTTTGTTGAGATTTCACTATGG 57.321 36.000 0.00 0.00 31.71 2.74
3582 12663 9.606631 GTCCTGAATATAAGTCTTTGTTGAGAT 57.393 33.333 0.00 0.00 0.00 2.75
3583 12664 7.759886 CGTCCTGAATATAAGTCTTTGTTGAGA 59.240 37.037 0.00 0.00 0.00 3.27
3585 12666 6.816640 CCGTCCTGAATATAAGTCTTTGTTGA 59.183 38.462 0.00 0.00 0.00 3.18
3586 12667 6.816640 TCCGTCCTGAATATAAGTCTTTGTTG 59.183 38.462 0.00 0.00 0.00 3.33
3588 12669 6.407074 CCTCCGTCCTGAATATAAGTCTTTGT 60.407 42.308 0.00 0.00 0.00 2.83
3589 12670 5.986135 CCTCCGTCCTGAATATAAGTCTTTG 59.014 44.000 0.00 0.00 0.00 2.77
3590 12671 5.070580 CCCTCCGTCCTGAATATAAGTCTTT 59.929 44.000 0.00 0.00 0.00 2.52
3593 12674 4.150359 TCCCTCCGTCCTGAATATAAGTC 58.850 47.826 0.00 0.00 0.00 3.01
3594 12675 4.153411 CTCCCTCCGTCCTGAATATAAGT 58.847 47.826 0.00 0.00 0.00 2.24
3595 12676 4.153411 ACTCCCTCCGTCCTGAATATAAG 58.847 47.826 0.00 0.00 0.00 1.73
3596 12677 4.194678 ACTCCCTCCGTCCTGAATATAA 57.805 45.455 0.00 0.00 0.00 0.98
3598 12679 2.777459 ACTCCCTCCGTCCTGAATAT 57.223 50.000 0.00 0.00 0.00 1.28
3599 12680 2.781757 TCTACTCCCTCCGTCCTGAATA 59.218 50.000 0.00 0.00 0.00 1.75
3600 12681 1.569548 TCTACTCCCTCCGTCCTGAAT 59.430 52.381 0.00 0.00 0.00 2.57
3601 12682 0.997363 TCTACTCCCTCCGTCCTGAA 59.003 55.000 0.00 0.00 0.00 3.02
3602 12683 0.997363 TTCTACTCCCTCCGTCCTGA 59.003 55.000 0.00 0.00 0.00 3.86
3603 12684 1.394618 CTTCTACTCCCTCCGTCCTG 58.605 60.000 0.00 0.00 0.00 3.86
3604 12685 0.259356 CCTTCTACTCCCTCCGTCCT 59.741 60.000 0.00 0.00 0.00 3.85
3605 12686 0.756070 CCCTTCTACTCCCTCCGTCC 60.756 65.000 0.00 0.00 0.00 4.79
3606 12687 1.393487 GCCCTTCTACTCCCTCCGTC 61.393 65.000 0.00 0.00 0.00 4.79
3607 12688 1.381463 GCCCTTCTACTCCCTCCGT 60.381 63.158 0.00 0.00 0.00 4.69
3608 12689 0.760945 ATGCCCTTCTACTCCCTCCG 60.761 60.000 0.00 0.00 0.00 4.63
3609 12690 1.418264 GAATGCCCTTCTACTCCCTCC 59.582 57.143 0.00 0.00 0.00 4.30
3610 12691 2.103941 CTGAATGCCCTTCTACTCCCTC 59.896 54.545 0.00 0.00 34.75 4.30
3611 12692 2.122768 CTGAATGCCCTTCTACTCCCT 58.877 52.381 0.00 0.00 34.75 4.20
3612 12693 2.119495 TCTGAATGCCCTTCTACTCCC 58.881 52.381 0.00 0.00 34.75 4.30
3613 12694 3.737850 CATCTGAATGCCCTTCTACTCC 58.262 50.000 0.00 0.00 34.75 3.85
3665 12747 5.975988 AGAAATCATGTAAGGGCTCCTAA 57.024 39.130 0.00 0.00 31.13 2.69
3666 12748 5.428457 TCAAGAAATCATGTAAGGGCTCCTA 59.572 40.000 0.00 0.00 31.13 2.94
3672 12754 5.591877 CCTTCCTCAAGAAATCATGTAAGGG 59.408 44.000 0.00 0.00 32.88 3.95
3788 12871 2.119457 CGTCTGGTTTTCTTTTGCTGC 58.881 47.619 0.00 0.00 0.00 5.25
3791 12874 4.024048 TCAGATCGTCTGGTTTTCTTTTGC 60.024 41.667 12.89 0.00 44.39 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.