Multiple sequence alignment - TraesCS2B01G404100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G404100 chr2B 100.000 4226 0 0 1 4226 572308346 572312571 0.000000e+00 7805.0
1 TraesCS2B01G404100 chr2B 84.008 1063 115 30 3184 4226 572177316 572178343 0.000000e+00 970.0
2 TraesCS2B01G404100 chr2B 86.079 862 71 26 3388 4225 571348217 571347381 0.000000e+00 881.0
3 TraesCS2B01G404100 chr2B 86.158 354 26 13 2203 2556 572176912 572177242 1.120000e-95 361.0
4 TraesCS2B01G404100 chr2B 87.055 309 36 2 1073 1381 572276809 572277113 3.130000e-91 346.0
5 TraesCS2B01G404100 chr2B 85.479 303 25 12 251 553 572261705 572261988 8.880000e-77 298.0
6 TraesCS2B01G404100 chr2B 84.211 304 32 7 3335 3629 82961124 82961420 8.950000e-72 281.0
7 TraesCS2B01G404100 chr2B 83.849 291 21 6 804 1070 572269494 572269782 1.950000e-63 254.0
8 TraesCS2B01G404100 chr2B 92.941 170 9 2 2991 3157 312294659 312294490 1.170000e-60 244.0
9 TraesCS2B01G404100 chr2B 91.908 173 8 5 2995 3161 478189638 478189810 1.960000e-58 237.0
10 TraesCS2B01G404100 chr2B 86.022 186 16 7 2992 3169 418664084 418664267 1.550000e-44 191.0
11 TraesCS2B01G404100 chr2B 85.714 196 11 2 568 759 572264636 572264818 1.550000e-44 191.0
12 TraesCS2B01G404100 chr2B 77.308 260 38 14 700 943 572176252 572176506 2.650000e-27 134.0
13 TraesCS2B01G404100 chr2B 93.333 60 2 1 3096 3153 741843167 741843226 2.090000e-13 87.9
14 TraesCS2B01G404100 chr2D 91.565 1482 66 26 893 2330 487929816 487931282 0.000000e+00 1989.0
15 TraesCS2B01G404100 chr2D 89.616 1069 76 23 3170 4226 487931955 487933000 0.000000e+00 1327.0
16 TraesCS2B01G404100 chr2D 86.605 866 65 21 3388 4225 486392983 486392141 0.000000e+00 909.0
17 TraesCS2B01G404100 chr2D 86.556 662 31 26 2365 2996 487931280 487931913 0.000000e+00 676.0
18 TraesCS2B01G404100 chr2D 87.333 300 19 5 491 771 487926633 487926932 4.070000e-85 326.0
19 TraesCS2B01G404100 chr2D 78.893 488 58 18 3551 4035 488055818 488056263 5.350000e-74 289.0
20 TraesCS2B01G404100 chr2D 93.220 177 12 0 233 409 487926420 487926596 1.170000e-65 261.0
21 TraesCS2B01G404100 chr2D 82.155 297 34 9 2259 2555 487613249 487613526 1.960000e-58 237.0
22 TraesCS2B01G404100 chr2A 89.766 1583 70 25 355 1900 632582669 632584196 0.000000e+00 1941.0
23 TraesCS2B01G404100 chr2A 87.973 1056 78 32 3188 4226 632586586 632587609 0.000000e+00 1201.0
24 TraesCS2B01G404100 chr2A 85.683 922 80 25 3338 4225 631857896 631856993 0.000000e+00 924.0
25 TraesCS2B01G404100 chr2A 92.937 538 23 7 2139 2664 632584705 632585239 0.000000e+00 769.0
26 TraesCS2B01G404100 chr2A 78.758 499 62 23 3554 4047 632592140 632592599 1.150000e-75 294.0
27 TraesCS2B01G404100 chr2A 91.045 201 14 3 2791 2990 632585563 632585760 6.960000e-68 268.0
28 TraesCS2B01G404100 chr2A 88.608 158 14 2 1904 2060 632584373 632584527 5.580000e-44 189.0
29 TraesCS2B01G404100 chr2A 96.491 57 0 2 155 211 632582531 632582585 4.500000e-15 93.5
30 TraesCS2B01G404100 chr2A 92.453 53 1 1 2691 2740 632585244 632585296 5.860000e-09 73.1
31 TraesCS2B01G404100 chr2A 88.235 51 6 0 289 339 632582623 632582673 1.270000e-05 62.1
32 TraesCS2B01G404100 chr3D 81.761 636 79 19 3620 4226 16450131 16449504 8.160000e-137 497.0
33 TraesCS2B01G404100 chr3D 84.834 422 47 7 1342 1753 546318942 546319356 3.930000e-110 409.0
34 TraesCS2B01G404100 chr3D 84.323 421 49 7 1343 1753 544440996 544441409 3.060000e-106 396.0
35 TraesCS2B01G404100 chr3D 91.329 173 11 3 2994 3163 397162707 397162536 2.540000e-57 233.0
36 TraesCS2B01G404100 chr3D 90.503 179 11 4 2989 3162 507038575 507038752 9.140000e-57 231.0
37 TraesCS2B01G404100 chr3D 89.888 89 9 0 1284 1372 544440901 544440989 9.600000e-22 115.0
38 TraesCS2B01G404100 chr7D 80.945 635 84 19 3620 4225 446550106 446550732 6.400000e-128 468.0
39 TraesCS2B01G404100 chr7D 87.634 186 14 6 2994 3172 406904402 406904219 1.540000e-49 207.0
40 TraesCS2B01G404100 chrUn 83.130 492 51 14 3764 4226 195338638 195338150 1.820000e-113 420.0
41 TraesCS2B01G404100 chrUn 82.239 259 27 6 3986 4226 40175209 40175466 5.540000e-49 206.0
42 TraesCS2B01G404100 chr6A 82.960 446 44 18 3335 3763 226334475 226334905 1.430000e-99 374.0
43 TraesCS2B01G404100 chr6A 87.019 208 22 5 2787 2990 226334090 226334296 3.290000e-56 230.0
44 TraesCS2B01G404100 chr7A 82.938 422 32 16 1342 1753 575316457 575316066 1.120000e-90 344.0
45 TraesCS2B01G404100 chr7A 86.486 111 12 1 1272 1382 575316560 575316453 7.420000e-23 119.0
46 TraesCS2B01G404100 chr3B 86.319 307 33 5 1406 1704 723267138 723267443 4.070000e-85 326.0
47 TraesCS2B01G404100 chr3B 93.333 165 8 2 2993 3154 79117114 79116950 1.520000e-59 241.0
48 TraesCS2B01G404100 chr5D 92.899 169 9 3 2995 3160 334801295 334801463 4.220000e-60 243.0
49 TraesCS2B01G404100 chr5D 92.771 166 9 2 2995 3157 151671709 151671544 1.960000e-58 237.0
50 TraesCS2B01G404100 chr1A 92.771 166 8 3 2995 3157 254349076 254348912 1.960000e-58 237.0
51 TraesCS2B01G404100 chr4A 91.765 170 10 3 2995 3160 729702031 729701862 2.540000e-57 233.0
52 TraesCS2B01G404100 chr4B 89.941 169 14 2 2995 3160 659784204 659784372 9.200000e-52 215.0
53 TraesCS2B01G404100 chr6B 87.845 181 11 9 2995 3169 219630663 219630488 7.160000e-48 202.0
54 TraesCS2B01G404100 chr5B 84.066 182 22 6 2995 3171 410536409 410536230 7.270000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G404100 chr2B 572308346 572312571 4225 False 7805.000000 7805 100.000000 1 4226 1 chr2B.!!$F6 4225
1 TraesCS2B01G404100 chr2B 571347381 571348217 836 True 881.000000 881 86.079000 3388 4225 1 chr2B.!!$R2 837
2 TraesCS2B01G404100 chr2B 572176252 572178343 2091 False 488.333333 970 82.491333 700 4226 3 chr2B.!!$F8 3526
3 TraesCS2B01G404100 chr2B 572261705 572264818 3113 False 244.500000 298 85.596500 251 759 2 chr2B.!!$F9 508
4 TraesCS2B01G404100 chr2D 487926420 487933000 6580 False 915.800000 1989 89.658000 233 4226 5 chr2D.!!$F3 3993
5 TraesCS2B01G404100 chr2D 486392141 486392983 842 True 909.000000 909 86.605000 3388 4225 1 chr2D.!!$R1 837
6 TraesCS2B01G404100 chr2A 631856993 631857896 903 True 924.000000 924 85.683000 3338 4225 1 chr2A.!!$R1 887
7 TraesCS2B01G404100 chr2A 632582531 632587609 5078 False 574.587500 1941 90.938500 155 4226 8 chr2A.!!$F2 4071
8 TraesCS2B01G404100 chr3D 16449504 16450131 627 True 497.000000 497 81.761000 3620 4226 1 chr3D.!!$R1 606
9 TraesCS2B01G404100 chr3D 544440901 544441409 508 False 255.500000 396 87.105500 1284 1753 2 chr3D.!!$F3 469
10 TraesCS2B01G404100 chr7D 446550106 446550732 626 False 468.000000 468 80.945000 3620 4225 1 chr7D.!!$F1 605
11 TraesCS2B01G404100 chr6A 226334090 226334905 815 False 302.000000 374 84.989500 2787 3763 2 chr6A.!!$F1 976

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 460 0.037303 ACAGATGCTCACCAACAGGG 59.963 55.0 0.00 0.0 44.81 4.45 F
705 3351 0.250038 GCCATCTTATCGCCAGCTGA 60.250 55.0 17.39 0.0 0.00 4.26 F
980 6584 0.606401 ACCACAGCCATCGAAACCAG 60.606 55.0 0.00 0.0 0.00 4.00 F
2281 8238 0.948141 GTCAGCCATATCAGCCGCTC 60.948 60.0 0.00 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 7547 0.108329 CATCTACCGGGTGACACCAC 60.108 60.0 25.75 13.97 41.02 4.16 R
2281 8238 0.606401 AAATGGTGTCCGTGGAGCTG 60.606 55.0 0.00 0.00 0.00 4.24 R
2733 8730 1.073768 GCGCACTCTCGGTCTCTTTC 61.074 60.0 0.30 0.00 0.00 2.62 R
3234 10119 0.034186 ATTCCAGGCGGCAATCTGAA 60.034 50.0 13.08 6.44 33.11 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.747529 GCGGGGCCTACGAACGTT 62.748 66.667 21.55 0.00 0.00 3.99
45 46 2.507769 CGGGGCCTACGAACGTTC 60.508 66.667 18.47 18.47 0.00 3.95
46 47 2.658422 GGGGCCTACGAACGTTCA 59.342 61.111 26.71 8.55 0.00 3.18
47 48 1.447314 GGGGCCTACGAACGTTCAG 60.447 63.158 26.71 20.47 0.00 3.02
48 49 1.447314 GGGCCTACGAACGTTCAGG 60.447 63.158 26.71 25.09 0.00 3.86
49 50 1.588082 GGCCTACGAACGTTCAGGA 59.412 57.895 29.41 18.08 0.00 3.86
50 51 0.458025 GGCCTACGAACGTTCAGGAG 60.458 60.000 29.41 24.20 0.00 3.69
51 52 1.077089 GCCTACGAACGTTCAGGAGC 61.077 60.000 29.41 21.29 0.00 4.70
52 53 0.458025 CCTACGAACGTTCAGGAGCC 60.458 60.000 26.71 0.00 0.00 4.70
53 54 0.242825 CTACGAACGTTCAGGAGCCA 59.757 55.000 26.71 3.66 0.00 4.75
54 55 0.675083 TACGAACGTTCAGGAGCCAA 59.325 50.000 26.71 1.08 0.00 4.52
55 56 0.600255 ACGAACGTTCAGGAGCCAAG 60.600 55.000 26.71 10.32 0.00 3.61
56 57 1.869690 GAACGTTCAGGAGCCAAGC 59.130 57.895 23.12 0.00 0.00 4.01
57 58 0.884704 GAACGTTCAGGAGCCAAGCA 60.885 55.000 23.12 0.00 0.00 3.91
58 59 0.465460 AACGTTCAGGAGCCAAGCAA 60.465 50.000 0.00 0.00 0.00 3.91
59 60 0.886490 ACGTTCAGGAGCCAAGCAAG 60.886 55.000 0.00 0.00 0.00 4.01
60 61 1.583477 GTTCAGGAGCCAAGCAAGC 59.417 57.895 0.00 0.00 0.00 4.01
61 62 1.151221 TTCAGGAGCCAAGCAAGCA 59.849 52.632 0.00 0.00 0.00 3.91
62 63 0.467844 TTCAGGAGCCAAGCAAGCAA 60.468 50.000 0.00 0.00 0.00 3.91
63 64 0.251474 TCAGGAGCCAAGCAAGCAAT 60.251 50.000 0.00 0.00 0.00 3.56
64 65 0.108804 CAGGAGCCAAGCAAGCAATG 60.109 55.000 0.00 0.00 0.00 2.82
72 73 3.152703 GCAAGCAATGCGCACAAG 58.847 55.556 14.90 6.74 46.87 3.16
73 74 2.377310 GCAAGCAATGCGCACAAGG 61.377 57.895 14.90 3.25 46.87 3.61
74 75 2.048877 AAGCAATGCGCACAAGGC 60.049 55.556 14.90 14.52 46.13 4.35
75 76 2.858862 AAGCAATGCGCACAAGGCA 61.859 52.632 14.90 0.00 46.13 4.75
76 77 3.107661 GCAATGCGCACAAGGCAC 61.108 61.111 14.90 0.00 44.23 5.01
77 78 2.801996 CAATGCGCACAAGGCACG 60.802 61.111 14.90 0.00 44.23 5.34
78 79 4.041917 AATGCGCACAAGGCACGG 62.042 61.111 14.90 0.00 44.23 4.94
83 84 3.660111 GCACAAGGCACGGTGGTC 61.660 66.667 10.60 0.00 43.97 4.02
84 85 3.345808 CACAAGGCACGGTGGTCG 61.346 66.667 10.60 0.00 45.88 4.79
127 128 3.943691 CCCGGTTTGGTCGACCCA 61.944 66.667 31.19 18.97 43.27 4.51
128 129 2.358247 CCGGTTTGGTCGACCCAG 60.358 66.667 31.19 16.21 46.31 4.45
129 130 3.047877 CGGTTTGGTCGACCCAGC 61.048 66.667 31.19 24.10 46.31 4.85
130 131 2.430367 GGTTTGGTCGACCCAGCT 59.570 61.111 31.19 0.00 46.31 4.24
131 132 1.966451 GGTTTGGTCGACCCAGCTG 60.966 63.158 31.19 6.78 46.31 4.24
132 133 1.227853 GTTTGGTCGACCCAGCTGT 60.228 57.895 31.19 0.00 46.31 4.40
133 134 1.070786 TTTGGTCGACCCAGCTGTC 59.929 57.895 31.19 3.40 46.31 3.51
144 145 4.342987 AGCTGTCGCGCGTCTGAA 62.343 61.111 30.53 10.99 42.32 3.02
145 146 3.181967 GCTGTCGCGCGTCTGAAT 61.182 61.111 30.53 0.00 0.00 2.57
146 147 2.990735 CTGTCGCGCGTCTGAATC 59.009 61.111 30.98 12.38 0.00 2.52
147 148 2.506217 TGTCGCGCGTCTGAATCC 60.506 61.111 30.98 8.83 0.00 3.01
148 149 2.202623 GTCGCGCGTCTGAATCCT 60.203 61.111 30.98 0.00 0.00 3.24
149 150 1.063649 GTCGCGCGTCTGAATCCTA 59.936 57.895 30.98 2.41 0.00 2.94
150 151 0.317938 GTCGCGCGTCTGAATCCTAT 60.318 55.000 30.98 0.00 0.00 2.57
151 152 0.317854 TCGCGCGTCTGAATCCTATG 60.318 55.000 30.98 0.00 0.00 2.23
152 153 1.856012 GCGCGTCTGAATCCTATGC 59.144 57.895 8.43 0.00 0.00 3.14
153 154 1.560860 GCGCGTCTGAATCCTATGCC 61.561 60.000 8.43 0.00 0.00 4.40
170 171 1.342474 TGCCTTCTCTCGAGGAATCCT 60.342 52.381 13.56 0.00 36.33 3.24
171 172 2.091830 TGCCTTCTCTCGAGGAATCCTA 60.092 50.000 13.56 0.00 36.33 2.94
172 173 3.161866 GCCTTCTCTCGAGGAATCCTAT 58.838 50.000 13.56 0.00 36.33 2.57
215 216 4.745751 CCGGCCGCGACAAAGGTA 62.746 66.667 22.85 0.00 0.00 3.08
216 217 2.739287 CGGCCGCGACAAAGGTAA 60.739 61.111 14.67 0.00 0.00 2.85
217 218 2.865308 GGCCGCGACAAAGGTAAC 59.135 61.111 8.23 0.00 0.00 2.50
218 219 2.683859 GGCCGCGACAAAGGTAACC 61.684 63.158 8.23 0.00 37.17 2.85
219 220 1.962306 GCCGCGACAAAGGTAACCA 60.962 57.895 8.23 0.00 37.17 3.67
220 221 1.508808 GCCGCGACAAAGGTAACCAA 61.509 55.000 8.23 0.00 37.17 3.67
221 222 0.236449 CCGCGACAAAGGTAACCAAC 59.764 55.000 8.23 0.00 37.17 3.77
222 223 0.938713 CGCGACAAAGGTAACCAACA 59.061 50.000 0.00 0.00 37.17 3.33
223 224 1.070175 CGCGACAAAGGTAACCAACAG 60.070 52.381 0.00 0.00 37.17 3.16
224 225 1.334689 GCGACAAAGGTAACCAACAGC 60.335 52.381 0.00 0.00 37.17 4.40
225 226 2.218603 CGACAAAGGTAACCAACAGCT 58.781 47.619 0.00 0.00 37.17 4.24
226 227 2.223377 CGACAAAGGTAACCAACAGCTC 59.777 50.000 0.00 0.00 37.17 4.09
227 228 2.218603 ACAAAGGTAACCAACAGCTCG 58.781 47.619 0.00 0.00 37.17 5.03
228 229 1.535462 CAAAGGTAACCAACAGCTCGG 59.465 52.381 0.00 0.00 37.17 4.63
229 230 0.605589 AAGGTAACCAACAGCTCGGC 60.606 55.000 0.00 0.00 37.17 5.54
230 231 1.003718 GGTAACCAACAGCTCGGCT 60.004 57.895 0.00 0.00 40.77 5.52
231 232 1.019805 GGTAACCAACAGCTCGGCTC 61.020 60.000 0.00 0.00 36.40 4.70
291 292 2.518349 ACAACCAACCACCGCCAG 60.518 61.111 0.00 0.00 0.00 4.85
314 315 0.456312 CCGACTCGGTGCTCAAGTAC 60.456 60.000 9.51 0.00 42.73 2.73
326 327 2.924101 AAGTACCCGCCGGAACCA 60.924 61.111 5.05 0.00 0.00 3.67
356 357 3.954258 ACCATACTACTTGTACCGGTACC 59.046 47.826 35.71 21.14 38.06 3.34
440 445 2.876550 TCTCAGAGTTCGAAACGACAGA 59.123 45.455 0.00 0.00 34.89 3.41
455 460 0.037303 ACAGATGCTCACCAACAGGG 59.963 55.000 0.00 0.00 44.81 4.45
476 481 0.668535 AGAAAAGTGCGCAAACTCCC 59.331 50.000 14.00 0.00 0.00 4.30
518 523 1.675219 GTGTAGAAGCACCGGGGAA 59.325 57.895 8.67 0.00 33.53 3.97
665 3307 1.000612 ATGACCATGCATGCCACCA 59.999 52.632 21.69 14.58 0.00 4.17
705 3351 0.250038 GCCATCTTATCGCCAGCTGA 60.250 55.000 17.39 0.00 0.00 4.26
737 3383 2.202008 GAAAACCGAGCGTTCGCG 60.202 61.111 16.81 11.87 45.38 5.87
763 3412 4.202245 TCGGTCCTGTCTAATTTGAAGG 57.798 45.455 9.93 9.93 0.00 3.46
773 3422 5.934625 TGTCTAATTTGAAGGAACAGAGCTC 59.065 40.000 5.27 5.27 0.00 4.09
774 3423 5.352846 GTCTAATTTGAAGGAACAGAGCTCC 59.647 44.000 10.93 0.00 0.00 4.70
775 3424 2.568623 TTTGAAGGAACAGAGCTCCC 57.431 50.000 10.93 4.15 32.95 4.30
776 3425 1.734655 TTGAAGGAACAGAGCTCCCT 58.265 50.000 10.93 6.78 32.95 4.20
777 3426 2.623418 TGAAGGAACAGAGCTCCCTA 57.377 50.000 10.93 0.00 32.95 3.53
778 3427 2.461695 TGAAGGAACAGAGCTCCCTAG 58.538 52.381 10.93 0.49 32.95 3.02
779 3428 2.225394 TGAAGGAACAGAGCTCCCTAGT 60.225 50.000 10.93 1.19 32.95 2.57
780 3429 2.153034 AGGAACAGAGCTCCCTAGTC 57.847 55.000 10.93 1.01 32.95 2.59
781 3430 1.116308 GGAACAGAGCTCCCTAGTCC 58.884 60.000 10.93 6.92 0.00 3.85
782 3431 1.116308 GAACAGAGCTCCCTAGTCCC 58.884 60.000 10.93 0.00 0.00 4.46
788 3446 3.138653 CAGAGCTCCCTAGTCCCTAGTTA 59.861 52.174 10.93 0.00 32.62 2.24
852 4294 3.615937 GTCTCTGAGTCGACGTGTGTATA 59.384 47.826 10.46 0.00 0.00 1.47
913 6350 2.652662 GCATTTATTCTGCGTCCTCG 57.347 50.000 0.00 0.00 40.37 4.63
980 6584 0.606401 ACCACAGCCATCGAAACCAG 60.606 55.000 0.00 0.00 0.00 4.00
981 6585 1.308069 CCACAGCCATCGAAACCAGG 61.308 60.000 0.00 0.00 0.00 4.45
1018 6625 1.139989 CATGTGCAAGTTCGTCTCGT 58.860 50.000 0.00 0.00 0.00 4.18
1039 6646 3.803082 CGTCGGCCATGCACCTTG 61.803 66.667 2.24 0.00 0.00 3.61
1231 6844 1.296392 CTCGCCTCCATCACCAACA 59.704 57.895 0.00 0.00 0.00 3.33
1317 6930 4.514577 CTCTACCAGTGCCGCGGG 62.515 72.222 29.38 12.50 38.47 6.13
1783 7444 2.384382 CGTCACAAGGTACGTTACGTT 58.616 47.619 17.42 0.00 41.54 3.99
1827 7488 5.205565 GTCTGAACTTTGAACCAACGAATC 58.794 41.667 0.00 0.00 0.00 2.52
1829 7490 5.355630 TCTGAACTTTGAACCAACGAATCAA 59.644 36.000 0.00 0.00 0.00 2.57
1830 7491 5.955488 TGAACTTTGAACCAACGAATCAAA 58.045 33.333 0.00 0.00 39.89 2.69
1831 7492 6.568869 TGAACTTTGAACCAACGAATCAAAT 58.431 32.000 0.00 0.00 40.94 2.32
1832 7493 7.708051 TGAACTTTGAACCAACGAATCAAATA 58.292 30.769 0.00 0.00 40.94 1.40
1833 7494 8.356657 TGAACTTTGAACCAACGAATCAAATAT 58.643 29.630 0.00 0.00 40.94 1.28
1834 7495 9.834628 GAACTTTGAACCAACGAATCAAATATA 57.165 29.630 0.00 0.00 40.94 0.86
1861 7527 1.442769 TGCCAGAATTCGTTCTCTGC 58.557 50.000 0.00 3.49 38.19 4.26
1864 7530 2.413371 GCCAGAATTCGTTCTCTGCAAC 60.413 50.000 0.00 0.00 38.19 4.17
1866 7532 3.438087 CCAGAATTCGTTCTCTGCAACAT 59.562 43.478 0.00 0.00 38.19 2.71
1873 7539 2.673368 CGTTCTCTGCAACATTACCTCC 59.327 50.000 0.00 0.00 0.00 4.30
1881 7547 1.942657 CAACATTACCTCCTGATGCCG 59.057 52.381 0.00 0.00 0.00 5.69
1892 7558 2.746277 GATGCCGTGGTGTCACCC 60.746 66.667 19.57 9.68 40.65 4.61
1893 7559 4.697756 ATGCCGTGGTGTCACCCG 62.698 66.667 19.57 19.80 40.65 5.28
1958 7796 1.610522 GGAATTGATTCCGATGGGCAG 59.389 52.381 6.98 0.00 46.01 4.85
2008 7847 3.231818 AGATCGGTCGGAATATGTCCTT 58.768 45.455 0.00 0.00 45.36 3.36
2015 7854 4.941873 GGTCGGAATATGTCCTTTGAAAGT 59.058 41.667 4.02 0.00 45.36 2.66
2017 7856 6.258068 GGTCGGAATATGTCCTTTGAAAGTAG 59.742 42.308 4.02 0.00 45.36 2.57
2019 7858 5.007724 CGGAATATGTCCTTTGAAAGTAGCC 59.992 44.000 4.02 0.00 45.36 3.93
2020 7859 5.299531 GGAATATGTCCTTTGAAAGTAGCCC 59.700 44.000 4.02 0.00 43.98 5.19
2042 7886 5.656416 CCCTTTTCACTTTATCATGGGCTTA 59.344 40.000 0.00 0.00 0.00 3.09
2055 7899 1.357420 TGGGCTTACACAATGGATGGT 59.643 47.619 0.00 0.00 0.00 3.55
2106 7975 7.098074 ACTAGGAGCACATACAGTACTTAAC 57.902 40.000 0.00 0.00 0.00 2.01
2170 8127 6.634805 AGTAGATCAAATAGGTCTGTGTGTG 58.365 40.000 0.00 0.00 0.00 3.82
2281 8238 0.948141 GTCAGCCATATCAGCCGCTC 60.948 60.000 0.00 0.00 0.00 5.03
2343 8300 4.794648 CATCCCGGCGGCCTTTCA 62.795 66.667 23.20 0.00 0.00 2.69
2363 8320 1.376466 GGGGACCGCAGCATCATAT 59.624 57.895 3.14 0.00 40.86 1.78
2365 8322 1.210478 GGGGACCGCAGCATCATATAT 59.790 52.381 3.14 0.00 40.86 0.86
2366 8323 2.555199 GGGACCGCAGCATCATATATC 58.445 52.381 0.00 0.00 0.00 1.63
2394 8351 2.902705 TTAGGCGAGACAAACAGTGT 57.097 45.000 0.00 0.00 45.74 3.55
2523 8512 9.877178 ATAGATTCGAACTTTACTTGTTGATCT 57.123 29.630 0.00 0.00 0.00 2.75
2525 8514 9.360093 AGATTCGAACTTTACTTGTTGATCTAG 57.640 33.333 0.00 0.00 0.00 2.43
2733 8730 9.448438 TGAATATATTCCCGATAAACAAGATGG 57.552 33.333 20.29 0.00 35.97 3.51
2771 8791 3.053455 CGCATCTAGCTAGCTTTGTACC 58.947 50.000 24.88 6.72 42.61 3.34
2784 8804 7.201803 GCTAGCTTTGTACCAGTACTACTGTAT 60.202 40.741 7.70 5.68 44.50 2.29
2821 9044 4.024048 TCAGATCGTCTGGTTTTCTTTTGC 60.024 41.667 12.89 0.00 44.39 3.68
2824 9047 2.119457 CGTCTGGTTTTCTTTTGCTGC 58.881 47.619 0.00 0.00 0.00 5.25
2940 9164 5.591877 CCTTCCTCAAGAAATCATGTAAGGG 59.408 44.000 0.00 0.00 32.88 3.95
2946 9170 5.428457 TCAAGAAATCATGTAAGGGCTCCTA 59.572 40.000 0.00 0.00 31.13 2.94
2947 9171 5.975988 AGAAATCATGTAAGGGCTCCTAA 57.024 39.130 0.00 0.00 31.13 2.69
3002 9227 2.103941 CTGAATGCCCTTCTACTCCCTC 59.896 54.545 0.00 0.00 34.75 4.30
3008 9233 0.259356 CCTTCTACTCCCTCCGTCCT 59.741 60.000 0.00 0.00 0.00 3.85
3009 9234 1.394618 CTTCTACTCCCTCCGTCCTG 58.605 60.000 0.00 0.00 0.00 3.86
3011 9236 0.997363 TCTACTCCCTCCGTCCTGAA 59.003 55.000 0.00 0.00 0.00 3.02
3012 9237 1.569548 TCTACTCCCTCCGTCCTGAAT 59.430 52.381 0.00 0.00 0.00 2.57
3013 9238 2.781757 TCTACTCCCTCCGTCCTGAATA 59.218 50.000 0.00 0.00 0.00 1.75
3016 9241 4.194678 ACTCCCTCCGTCCTGAATATAA 57.805 45.455 0.00 0.00 0.00 0.98
3017 9242 4.153411 ACTCCCTCCGTCCTGAATATAAG 58.847 47.826 0.00 0.00 0.00 1.73
3018 9243 4.153411 CTCCCTCCGTCCTGAATATAAGT 58.847 47.826 0.00 0.00 0.00 2.24
3019 9244 4.150359 TCCCTCCGTCCTGAATATAAGTC 58.850 47.826 0.00 0.00 0.00 3.01
3022 9247 5.070580 CCCTCCGTCCTGAATATAAGTCTTT 59.929 44.000 0.00 0.00 0.00 2.52
3023 9248 5.986135 CCTCCGTCCTGAATATAAGTCTTTG 59.014 44.000 0.00 0.00 0.00 2.77
3028 9253 7.010552 CCGTCCTGAATATAAGTCTTTGTTGAG 59.989 40.741 0.00 0.00 0.00 3.02
3030 9255 9.606631 GTCCTGAATATAAGTCTTTGTTGAGAT 57.393 33.333 0.00 0.00 0.00 2.75
3040 9265 7.678947 AGTCTTTGTTGAGATTTCACTATGG 57.321 36.000 0.00 0.00 31.71 2.74
3041 9266 7.453393 AGTCTTTGTTGAGATTTCACTATGGA 58.547 34.615 0.00 0.00 31.71 3.41
3042 9267 7.389053 AGTCTTTGTTGAGATTTCACTATGGAC 59.611 37.037 0.00 0.00 31.71 4.02
3043 9268 6.655003 TCTTTGTTGAGATTTCACTATGGACC 59.345 38.462 0.00 0.00 31.71 4.46
3044 9269 5.497464 TGTTGAGATTTCACTATGGACCA 57.503 39.130 0.00 0.00 31.71 4.02
3045 9270 5.245531 TGTTGAGATTTCACTATGGACCAC 58.754 41.667 0.00 0.00 31.71 4.16
3046 9271 5.221823 TGTTGAGATTTCACTATGGACCACA 60.222 40.000 0.00 0.00 31.71 4.17
3047 9272 5.698741 TGAGATTTCACTATGGACCACAT 57.301 39.130 0.00 0.00 43.68 3.21
3048 9273 6.806668 TGAGATTTCACTATGGACCACATA 57.193 37.500 0.00 0.00 41.03 2.29
3049 9274 6.582636 TGAGATTTCACTATGGACCACATAC 58.417 40.000 0.00 0.00 41.03 2.39
3050 9275 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
3051 9276 3.812156 TTCACTATGGACCACATACGG 57.188 47.619 0.00 0.00 41.03 4.02
3052 9277 3.021177 TCACTATGGACCACATACGGA 57.979 47.619 0.00 0.00 41.03 4.69
3056 9281 4.279922 CACTATGGACCACATACGGATGTA 59.720 45.833 14.23 0.00 44.82 2.29
3059 9284 6.895756 ACTATGGACCACATACGGATGTATAT 59.104 38.462 14.23 1.16 44.82 0.86
3061 9286 6.769134 TGGACCACATACGGATGTATATAG 57.231 41.667 14.23 0.00 44.82 1.31
3064 9289 7.068226 TGGACCACATACGGATGTATATAGATG 59.932 40.741 14.23 0.00 44.82 2.90
3074 9299 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
3075 9300 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
3098 9323 9.979270 GAGTATATATTCATTCATTTTGCTCCG 57.021 33.333 0.60 0.00 0.00 4.63
3099 9324 9.507329 AGTATATATTCATTCATTTTGCTCCGT 57.493 29.630 0.00 0.00 0.00 4.69
3103 9328 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
3105 9330 4.096231 TCATTCATTTTGCTCCGTATGTGG 59.904 41.667 0.00 0.00 0.00 4.17
3106 9331 3.066291 TCATTTTGCTCCGTATGTGGT 57.934 42.857 0.00 0.00 0.00 4.16
3107 9332 3.006940 TCATTTTGCTCCGTATGTGGTC 58.993 45.455 0.00 0.00 0.00 4.02
3108 9333 1.816074 TTTTGCTCCGTATGTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
3109 9334 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
3110 9335 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41
3111 9336 1.783071 TGCTCCGTATGTGGTCCATA 58.217 50.000 0.00 0.00 34.86 2.74
3112 9337 1.686587 TGCTCCGTATGTGGTCCATAG 59.313 52.381 0.00 0.00 36.71 2.23
3113 9338 1.687123 GCTCCGTATGTGGTCCATAGT 59.313 52.381 0.00 0.00 36.71 2.12
3115 9340 3.319972 GCTCCGTATGTGGTCCATAGTAA 59.680 47.826 0.00 0.00 36.71 2.24
3117 9342 5.682990 GCTCCGTATGTGGTCCATAGTAAAA 60.683 44.000 0.00 0.00 36.71 1.52
3118 9343 6.488769 TCCGTATGTGGTCCATAGTAAAAT 57.511 37.500 0.00 0.00 36.71 1.82
3119 9344 6.518493 TCCGTATGTGGTCCATAGTAAAATC 58.482 40.000 0.00 0.00 36.71 2.17
3121 9346 6.645415 CCGTATGTGGTCCATAGTAAAATCTC 59.355 42.308 0.00 0.00 36.71 2.75
3123 9348 7.595502 CGTATGTGGTCCATAGTAAAATCTCTC 59.404 40.741 0.00 0.00 36.71 3.20
3124 9349 6.235231 TGTGGTCCATAGTAAAATCTCTCC 57.765 41.667 0.00 0.00 0.00 3.71
3125 9350 5.724370 TGTGGTCCATAGTAAAATCTCTCCA 59.276 40.000 0.00 0.00 0.00 3.86
3126 9351 6.214615 TGTGGTCCATAGTAAAATCTCTCCAA 59.785 38.462 0.00 0.00 0.00 3.53
3127 9352 7.110155 GTGGTCCATAGTAAAATCTCTCCAAA 58.890 38.462 0.00 0.00 0.00 3.28
3128 9353 7.281100 GTGGTCCATAGTAAAATCTCTCCAAAG 59.719 40.741 0.00 0.00 0.00 2.77
3129 9354 7.182026 TGGTCCATAGTAAAATCTCTCCAAAGA 59.818 37.037 0.00 0.00 0.00 2.52
3130 9355 7.496263 GGTCCATAGTAAAATCTCTCCAAAGAC 59.504 40.741 0.00 0.00 0.00 3.01
3131 9356 8.261522 GTCCATAGTAAAATCTCTCCAAAGACT 58.738 37.037 0.00 0.00 0.00 3.24
3132 9357 8.826765 TCCATAGTAAAATCTCTCCAAAGACTT 58.173 33.333 0.00 0.00 0.00 3.01
3145 9370 7.673180 TCTCCAAAGACTTATTTAGAAACGGA 58.327 34.615 0.00 0.00 0.00 4.69
3147 9372 6.877322 TCCAAAGACTTATTTAGAAACGGAGG 59.123 38.462 0.00 0.00 0.00 4.30
3148 9373 6.093633 CCAAAGACTTATTTAGAAACGGAGGG 59.906 42.308 0.00 0.00 0.00 4.30
3150 9375 6.223351 AGACTTATTTAGAAACGGAGGGAG 57.777 41.667 0.00 0.00 0.00 4.30
3151 9376 5.720520 AGACTTATTTAGAAACGGAGGGAGT 59.279 40.000 0.00 0.00 0.00 3.85
3152 9377 6.894103 AGACTTATTTAGAAACGGAGGGAGTA 59.106 38.462 0.00 0.00 0.00 2.59
3153 9378 7.564292 AGACTTATTTAGAAACGGAGGGAGTAT 59.436 37.037 0.00 0.00 0.00 2.12
3154 9379 8.773033 ACTTATTTAGAAACGGAGGGAGTATA 57.227 34.615 0.00 0.00 0.00 1.47
3155 9380 9.377238 ACTTATTTAGAAACGGAGGGAGTATAT 57.623 33.333 0.00 0.00 0.00 0.86
3160 10044 6.651975 AGAAACGGAGGGAGTATATTACAG 57.348 41.667 0.00 0.00 0.00 2.74
3163 10047 6.890979 AACGGAGGGAGTATATTACAGTAC 57.109 41.667 0.00 0.00 0.00 2.73
3181 10065 7.151999 ACAGTACACTATGAGTCTGAAGAAG 57.848 40.000 0.00 0.00 0.00 2.85
3182 10066 6.033341 CAGTACACTATGAGTCTGAAGAAGC 58.967 44.000 0.00 0.00 0.00 3.86
3228 10113 6.127647 ACTGGTGTATCAATGCAGGTTAATTG 60.128 38.462 0.00 0.00 35.52 2.32
3232 10117 8.629158 GGTGTATCAATGCAGGTTAATTGATTA 58.371 33.333 14.33 4.40 46.43 1.75
3233 10118 9.669353 GTGTATCAATGCAGGTTAATTGATTAG 57.331 33.333 14.33 0.00 46.43 1.73
3234 10119 9.407380 TGTATCAATGCAGGTTAATTGATTAGT 57.593 29.630 14.33 0.00 46.43 2.24
3245 10130 6.912591 GGTTAATTGATTAGTTCAGATTGCCG 59.087 38.462 0.00 0.00 35.27 5.69
3253 10138 0.034186 TTCAGATTGCCGCCTGGAAT 60.034 50.000 0.00 0.00 37.49 3.01
3277 10162 2.093973 CCTTCAGTTCTCGCATACTGGT 60.094 50.000 0.00 0.00 41.58 4.00
3313 10199 1.256895 CGAACGACTTGCGAAAGACAA 59.743 47.619 11.02 0.00 44.57 3.18
3420 10331 2.599677 CCTGTAGGAGGATCACTACCC 58.400 57.143 14.86 1.68 46.33 3.69
3467 10383 3.388024 GTCCACTAATCATGGCTCACCTA 59.612 47.826 0.00 0.00 37.13 3.08
3474 10393 9.725019 CACTAATCATGGCTCACCTATTTATTA 57.275 33.333 0.00 0.00 36.63 0.98
3479 10398 9.686683 ATCATGGCTCACCTATTTATTATTACC 57.313 33.333 0.00 0.00 36.63 2.85
3513 10432 4.458295 CAGATGGCACTGTCAAGAATTCTT 59.542 41.667 15.11 15.11 33.49 2.52
3514 10433 4.699257 AGATGGCACTGTCAAGAATTCTTC 59.301 41.667 17.91 8.67 33.11 2.87
3589 10519 8.570488 TGCTACATAATAATCATTGCCTTTCAG 58.430 33.333 0.00 0.00 0.00 3.02
3609 10539 5.904941 TCAGTTGATTGCAGTCAAATTTGT 58.095 33.333 24.21 6.27 39.61 2.83
3631 10569 1.999048 TACAAAGGCACGACCATACG 58.001 50.000 0.00 0.00 43.14 3.06
3692 10633 5.163784 GGGCGGTTTCTTCTTTCTTGTATAC 60.164 44.000 0.00 0.00 0.00 1.47
3693 10634 5.163784 GGCGGTTTCTTCTTTCTTGTATACC 60.164 44.000 0.00 0.00 0.00 2.73
3694 10635 5.410439 GCGGTTTCTTCTTTCTTGTATACCA 59.590 40.000 0.00 0.00 0.00 3.25
3696 10637 7.361799 GCGGTTTCTTCTTTCTTGTATACCAAT 60.362 37.037 0.00 0.00 31.20 3.16
3698 10639 8.793592 GGTTTCTTCTTTCTTGTATACCAATGT 58.206 33.333 0.00 0.00 31.20 2.71
3741 10712 9.365906 CACCATATATGAGATCTAGCTAGGAAT 57.634 37.037 20.58 7.77 0.00 3.01
3745 10716 9.725019 ATATATGAGATCTAGCTAGGAATCTCG 57.275 37.037 29.36 6.90 37.83 4.04
3777 10766 1.482593 GCTACTGCTCCCATGTACTGT 59.517 52.381 0.00 0.00 36.03 3.55
3778 10767 2.693591 GCTACTGCTCCCATGTACTGTA 59.306 50.000 0.00 0.00 36.03 2.74
3779 10768 3.491104 GCTACTGCTCCCATGTACTGTAC 60.491 52.174 10.98 10.98 36.03 2.90
3780 10769 2.821437 ACTGCTCCCATGTACTGTACT 58.179 47.619 17.98 2.36 0.00 2.73
3781 10770 3.173965 ACTGCTCCCATGTACTGTACTT 58.826 45.455 17.98 9.72 0.00 2.24
3793 10789 1.005037 TGTACTTCAGTGCAGCGGG 60.005 57.895 0.00 0.00 35.76 6.13
3943 10939 1.128692 GTGTTTCATGCCGTACTGAGC 59.871 52.381 0.00 0.00 0.00 4.26
3983 10979 1.672356 GAACACTCGCACCTGGCAT 60.672 57.895 0.00 0.00 45.17 4.40
3984 10986 0.391130 GAACACTCGCACCTGGCATA 60.391 55.000 0.00 0.00 45.17 3.14
3998 11002 3.793819 TGGCATATGGCATCAGTACAT 57.206 42.857 26.67 0.00 46.12 2.29
4157 11187 2.513897 GGCCCCTTGTCGAATCCG 60.514 66.667 0.00 0.00 37.07 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.741401 TGCTACGCACCTGCACATC 60.741 57.895 0.00 0.00 42.21 3.06
1 2 2.347114 TGCTACGCACCTGCACAT 59.653 55.556 0.00 0.00 42.21 3.21
27 28 4.747529 AACGTTCGTAGGCCCCGC 62.748 66.667 0.00 0.00 0.00 6.13
28 29 2.507769 GAACGTTCGTAGGCCCCG 60.508 66.667 13.36 1.63 0.00 5.73
29 30 1.447314 CTGAACGTTCGTAGGCCCC 60.447 63.158 22.48 0.00 0.00 5.80
30 31 1.447314 CCTGAACGTTCGTAGGCCC 60.447 63.158 22.48 0.00 0.00 5.80
31 32 0.458025 CTCCTGAACGTTCGTAGGCC 60.458 60.000 23.45 0.00 0.00 5.19
32 33 1.077089 GCTCCTGAACGTTCGTAGGC 61.077 60.000 23.45 19.62 0.00 3.93
33 34 0.458025 GGCTCCTGAACGTTCGTAGG 60.458 60.000 22.65 22.65 0.00 3.18
34 35 0.242825 TGGCTCCTGAACGTTCGTAG 59.757 55.000 22.48 18.76 0.00 3.51
35 36 0.675083 TTGGCTCCTGAACGTTCGTA 59.325 50.000 22.48 9.90 0.00 3.43
36 37 0.600255 CTTGGCTCCTGAACGTTCGT 60.600 55.000 22.48 0.00 0.00 3.85
37 38 1.901650 GCTTGGCTCCTGAACGTTCG 61.902 60.000 22.48 16.45 0.00 3.95
38 39 0.884704 TGCTTGGCTCCTGAACGTTC 60.885 55.000 21.42 21.42 0.00 3.95
39 40 0.465460 TTGCTTGGCTCCTGAACGTT 60.465 50.000 0.00 0.00 0.00 3.99
40 41 0.886490 CTTGCTTGGCTCCTGAACGT 60.886 55.000 0.00 0.00 0.00 3.99
41 42 1.871772 CTTGCTTGGCTCCTGAACG 59.128 57.895 0.00 0.00 0.00 3.95
42 43 1.174712 TGCTTGCTTGGCTCCTGAAC 61.175 55.000 0.00 0.00 0.00 3.18
43 44 0.467844 TTGCTTGCTTGGCTCCTGAA 60.468 50.000 0.00 0.00 0.00 3.02
44 45 0.251474 ATTGCTTGCTTGGCTCCTGA 60.251 50.000 0.00 0.00 0.00 3.86
45 46 0.108804 CATTGCTTGCTTGGCTCCTG 60.109 55.000 0.00 0.00 0.00 3.86
46 47 2.273908 CATTGCTTGCTTGGCTCCT 58.726 52.632 0.00 0.00 0.00 3.69
47 48 4.904466 CATTGCTTGCTTGGCTCC 57.096 55.556 0.00 0.00 0.00 4.70
56 57 2.377310 GCCTTGTGCGCATTGCTTG 61.377 57.895 15.91 1.43 46.63 4.01
57 58 2.048877 GCCTTGTGCGCATTGCTT 60.049 55.556 15.91 0.00 46.63 3.91
58 59 3.296836 TGCCTTGTGCGCATTGCT 61.297 55.556 15.91 0.00 46.63 3.91
66 67 3.660111 GACCACCGTGCCTTGTGC 61.660 66.667 0.00 0.00 41.77 4.57
67 68 3.345808 CGACCACCGTGCCTTGTG 61.346 66.667 0.00 0.00 0.00 3.33
127 128 3.633094 ATTCAGACGCGCGACAGCT 62.633 57.895 39.36 23.32 42.32 4.24
128 129 3.131661 GATTCAGACGCGCGACAGC 62.132 63.158 39.36 21.42 40.74 4.40
129 130 2.508891 GGATTCAGACGCGCGACAG 61.509 63.158 39.36 27.50 0.00 3.51
130 131 1.650314 TAGGATTCAGACGCGCGACA 61.650 55.000 39.36 15.58 0.00 4.35
131 132 0.317938 ATAGGATTCAGACGCGCGAC 60.318 55.000 39.36 31.45 0.00 5.19
132 133 0.317854 CATAGGATTCAGACGCGCGA 60.318 55.000 39.36 14.91 0.00 5.87
133 134 1.880601 GCATAGGATTCAGACGCGCG 61.881 60.000 30.96 30.96 0.00 6.86
134 135 1.560860 GGCATAGGATTCAGACGCGC 61.561 60.000 5.73 0.00 0.00 6.86
135 136 0.032678 AGGCATAGGATTCAGACGCG 59.967 55.000 3.53 3.53 0.00 6.01
136 137 2.139118 GAAGGCATAGGATTCAGACGC 58.861 52.381 0.00 0.00 0.00 5.19
137 138 3.320541 AGAGAAGGCATAGGATTCAGACG 59.679 47.826 0.00 0.00 0.00 4.18
138 139 4.558496 CGAGAGAAGGCATAGGATTCAGAC 60.558 50.000 0.00 0.00 0.00 3.51
139 140 3.571828 CGAGAGAAGGCATAGGATTCAGA 59.428 47.826 0.00 0.00 0.00 3.27
140 141 3.571828 TCGAGAGAAGGCATAGGATTCAG 59.428 47.826 0.00 0.00 37.03 3.02
141 142 3.566351 TCGAGAGAAGGCATAGGATTCA 58.434 45.455 0.00 0.00 37.03 2.57
142 143 3.056891 CCTCGAGAGAAGGCATAGGATTC 60.057 52.174 15.71 0.00 41.32 2.52
143 144 2.896685 CCTCGAGAGAAGGCATAGGATT 59.103 50.000 15.71 0.00 41.32 3.01
144 145 2.109128 TCCTCGAGAGAAGGCATAGGAT 59.891 50.000 15.71 0.00 41.32 3.24
145 146 1.495148 TCCTCGAGAGAAGGCATAGGA 59.505 52.381 15.71 0.00 41.32 2.94
146 147 1.988293 TCCTCGAGAGAAGGCATAGG 58.012 55.000 15.71 0.00 41.32 2.57
147 148 3.056891 GGATTCCTCGAGAGAAGGCATAG 60.057 52.174 15.71 0.00 41.32 2.23
148 149 2.894126 GGATTCCTCGAGAGAAGGCATA 59.106 50.000 15.71 0.00 41.32 3.14
149 150 1.691434 GGATTCCTCGAGAGAAGGCAT 59.309 52.381 15.71 0.85 41.32 4.40
150 151 1.115467 GGATTCCTCGAGAGAAGGCA 58.885 55.000 15.71 0.00 41.32 4.75
151 152 1.408969 AGGATTCCTCGAGAGAAGGC 58.591 55.000 15.71 11.23 41.32 4.35
152 153 3.056891 GCATAGGATTCCTCGAGAGAAGG 60.057 52.174 15.71 0.00 41.32 3.46
153 154 3.056891 GGCATAGGATTCCTCGAGAGAAG 60.057 52.174 15.71 0.00 41.32 2.85
211 212 1.003718 GCCGAGCTGTTGGTTACCT 60.004 57.895 2.07 0.00 0.00 3.08
213 214 1.352156 CGAGCCGAGCTGTTGGTTAC 61.352 60.000 2.98 0.00 39.88 2.50
214 215 1.080093 CGAGCCGAGCTGTTGGTTA 60.080 57.895 2.98 0.00 39.88 2.85
215 216 2.357517 CGAGCCGAGCTGTTGGTT 60.358 61.111 2.98 0.00 39.88 3.67
216 217 4.379243 CCGAGCCGAGCTGTTGGT 62.379 66.667 2.98 0.00 39.88 3.67
217 218 4.379243 ACCGAGCCGAGCTGTTGG 62.379 66.667 2.98 5.31 39.88 3.77
218 219 2.842394 ATCACCGAGCCGAGCTGTTG 62.842 60.000 2.98 0.00 39.88 3.33
219 220 2.564553 GATCACCGAGCCGAGCTGTT 62.565 60.000 2.98 0.00 39.88 3.16
220 221 3.069980 GATCACCGAGCCGAGCTGT 62.070 63.158 2.98 0.00 39.88 4.40
221 222 2.279120 GATCACCGAGCCGAGCTG 60.279 66.667 2.98 0.00 39.88 4.24
222 223 3.532155 GGATCACCGAGCCGAGCT 61.532 66.667 0.00 0.00 43.88 4.09
314 315 4.376176 TTACGTGGTTCCGGCGGG 62.376 66.667 27.98 11.36 0.00 6.13
326 327 5.105756 GGTACAAGTAGTATGGTGGTTACGT 60.106 44.000 0.00 0.00 34.67 3.57
356 357 6.097356 CACTTTTCCTTGTCCATGATTGATG 58.903 40.000 0.00 0.00 0.00 3.07
440 445 1.067295 TCTTCCCTGTTGGTGAGCAT 58.933 50.000 0.00 0.00 34.77 3.79
455 460 2.385315 GGAGTTTGCGCACTTTTCTTC 58.615 47.619 11.12 0.89 0.00 2.87
665 3307 3.628008 CAGCATGGCCATATGATATGGT 58.372 45.455 27.26 8.70 41.17 3.55
688 3330 4.185467 ACTATCAGCTGGCGATAAGATG 57.815 45.455 15.13 0.00 32.30 2.90
705 3351 5.232463 TCGGTTTTCGTTCTGCTTTACTAT 58.768 37.500 0.00 0.00 40.32 2.12
737 3383 3.821421 AATTAGACAGGACCGATGACC 57.179 47.619 0.00 0.00 0.00 4.02
763 3412 1.116308 GGGACTAGGGAGCTCTGTTC 58.884 60.000 14.64 6.57 0.00 3.18
780 3429 4.350245 TGATCCCGTCCATATAACTAGGG 58.650 47.826 0.00 0.00 38.73 3.53
781 3430 5.125739 GTCTGATCCCGTCCATATAACTAGG 59.874 48.000 0.00 0.00 0.00 3.02
782 3431 5.125739 GGTCTGATCCCGTCCATATAACTAG 59.874 48.000 0.00 0.00 0.00 2.57
788 3446 2.158310 TCTGGTCTGATCCCGTCCATAT 60.158 50.000 0.00 0.00 0.00 1.78
852 4294 3.742983 GAGGCCGTCTCGAGATTTT 57.257 52.632 19.90 3.03 32.18 1.82
913 6350 1.280421 AGTGAAGAGAAGGGTGATGGC 59.720 52.381 0.00 0.00 0.00 4.40
920 6357 0.908198 CCTGGGAGTGAAGAGAAGGG 59.092 60.000 0.00 0.00 0.00 3.95
1018 6625 2.511373 GTGCATGGCCGACGATGA 60.511 61.111 5.00 0.00 0.00 2.92
1461 7109 2.098233 GTACACCATGGCCGTGTCG 61.098 63.158 23.39 15.65 43.29 4.35
1783 7444 1.555075 GAACAGAGGAGGTGCATGGTA 59.445 52.381 0.00 0.00 0.00 3.25
1833 7494 9.778741 AGAGAACGAATTCTGGCAATATTATTA 57.221 29.630 3.52 0.00 45.60 0.98
1834 7495 8.562892 CAGAGAACGAATTCTGGCAATATTATT 58.437 33.333 3.52 0.00 45.60 1.40
1835 7496 7.308229 GCAGAGAACGAATTCTGGCAATATTAT 60.308 37.037 3.52 0.00 45.60 1.28
1836 7497 6.017934 GCAGAGAACGAATTCTGGCAATATTA 60.018 38.462 3.52 0.00 45.60 0.98
1861 7527 1.942657 CGGCATCAGGAGGTAATGTTG 59.057 52.381 0.00 0.00 0.00 3.33
1864 7530 1.586422 CACGGCATCAGGAGGTAATG 58.414 55.000 0.00 0.00 0.00 1.90
1866 7532 0.907704 ACCACGGCATCAGGAGGTAA 60.908 55.000 0.00 0.00 0.00 2.85
1873 7539 2.034879 GGTGACACCACGGCATCAG 61.035 63.158 20.14 0.00 44.09 2.90
1881 7547 0.108329 CATCTACCGGGTGACACCAC 60.108 60.000 25.75 13.97 41.02 4.16
1892 7558 1.541233 GGCAGTTGATCCCATCTACCG 60.541 57.143 0.00 0.00 35.97 4.02
1893 7559 1.490490 TGGCAGTTGATCCCATCTACC 59.510 52.381 0.00 0.00 35.97 3.18
1894 7560 3.281727 TTGGCAGTTGATCCCATCTAC 57.718 47.619 0.00 0.00 35.66 2.59
1977 7815 2.879026 TCCGACCGATCTCACTTATCAG 59.121 50.000 0.00 0.00 0.00 2.90
2015 7854 5.200483 CCCATGATAAAGTGAAAAGGGCTA 58.800 41.667 0.00 0.00 0.00 3.93
2017 7856 4.391405 CCCATGATAAAGTGAAAAGGGC 57.609 45.455 0.00 0.00 0.00 5.19
2019 7858 5.665916 AAGCCCATGATAAAGTGAAAAGG 57.334 39.130 0.00 0.00 0.00 3.11
2020 7859 7.029563 GTGTAAGCCCATGATAAAGTGAAAAG 58.970 38.462 0.00 0.00 0.00 2.27
2042 7886 5.415701 GTGATTGTAAGACCATCCATTGTGT 59.584 40.000 0.00 0.00 0.00 3.72
2055 7899 3.579586 ACCTTGGTACGGTGATTGTAAGA 59.420 43.478 0.00 0.00 32.41 2.10
2233 8190 4.383335 GGTGTTCCAAATGATGATGGCAAT 60.383 41.667 0.00 0.00 36.62 3.56
2281 8238 0.606401 AAATGGTGTCCGTGGAGCTG 60.606 55.000 0.00 0.00 0.00 4.24
2343 8300 1.344953 TATGATGCTGCGGTCCCCTT 61.345 55.000 0.00 0.00 0.00 3.95
2363 8320 3.252701 GTCTCGCCTAATTGAGTCCGATA 59.747 47.826 0.00 0.00 33.88 2.92
2365 8322 1.404391 GTCTCGCCTAATTGAGTCCGA 59.596 52.381 0.00 0.00 33.88 4.55
2366 8323 1.134367 TGTCTCGCCTAATTGAGTCCG 59.866 52.381 0.00 0.00 33.88 4.79
2394 8351 4.402474 TCAGAGTTCAGATCGCCTTAATGA 59.598 41.667 0.00 0.00 0.00 2.57
2523 8512 7.232188 TCAGAAAGTTCTCTGAACCTCTACTA 58.768 38.462 12.49 0.00 46.92 1.82
2524 8513 6.071984 TCAGAAAGTTCTCTGAACCTCTACT 58.928 40.000 12.49 0.00 46.92 2.57
2525 8514 6.334102 TCAGAAAGTTCTCTGAACCTCTAC 57.666 41.667 12.49 0.00 46.92 2.59
2733 8730 1.073768 GCGCACTCTCGGTCTCTTTC 61.074 60.000 0.30 0.00 0.00 2.62
2800 9022 4.023707 CAGCAAAAGAAAACCAGACGATCT 60.024 41.667 0.00 0.00 0.00 2.75
2821 9044 6.834959 TCTTGCGAATAATCTTCTTAGCAG 57.165 37.500 0.00 0.00 35.06 4.24
2824 9047 7.168302 ACGTCATCTTGCGAATAATCTTCTTAG 59.832 37.037 0.00 0.00 0.00 2.18
2996 9221 4.153411 ACTTATATTCAGGACGGAGGGAG 58.847 47.826 0.00 0.00 0.00 4.30
3002 9227 6.816640 TCAACAAAGACTTATATTCAGGACGG 59.183 38.462 0.00 0.00 0.00 4.79
3016 9241 7.389053 GTCCATAGTGAAATCTCAACAAAGACT 59.611 37.037 0.00 0.00 31.88 3.24
3017 9242 7.361286 GGTCCATAGTGAAATCTCAACAAAGAC 60.361 40.741 0.00 0.00 31.88 3.01
3018 9243 6.655003 GGTCCATAGTGAAATCTCAACAAAGA 59.345 38.462 0.00 0.00 31.88 2.52
3019 9244 6.430925 TGGTCCATAGTGAAATCTCAACAAAG 59.569 38.462 0.00 0.00 31.88 2.77
3022 9247 5.221823 TGTGGTCCATAGTGAAATCTCAACA 60.222 40.000 0.00 0.00 31.88 3.33
3023 9248 5.245531 TGTGGTCCATAGTGAAATCTCAAC 58.754 41.667 0.00 0.00 31.88 3.18
3028 9253 4.750098 CCGTATGTGGTCCATAGTGAAATC 59.250 45.833 0.00 0.00 36.71 2.17
3030 9255 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
3031 9256 3.367321 TCCGTATGTGGTCCATAGTGAA 58.633 45.455 0.00 0.00 36.71 3.18
3032 9257 3.021177 TCCGTATGTGGTCCATAGTGA 57.979 47.619 0.00 0.00 36.71 3.41
3033 9258 3.069586 ACATCCGTATGTGGTCCATAGTG 59.930 47.826 0.00 0.00 44.79 2.74
3034 9259 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
3036 9261 8.276477 TCTATATACATCCGTATGTGGTCCATA 58.724 37.037 3.56 0.00 45.99 2.74
3037 9262 7.123383 TCTATATACATCCGTATGTGGTCCAT 58.877 38.462 3.56 0.00 45.99 3.41
3038 9263 6.486941 TCTATATACATCCGTATGTGGTCCA 58.513 40.000 3.56 0.00 45.99 4.02
3039 9264 7.426410 CATCTATATACATCCGTATGTGGTCC 58.574 42.308 3.56 0.00 45.99 4.46
3040 9265 6.918569 GCATCTATATACATCCGTATGTGGTC 59.081 42.308 3.56 0.00 45.99 4.02
3041 9266 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
3042 9267 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
3043 9268 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
3048 9273 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
3049 9274 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
3078 9303 8.077991 CACATACGGAGCAAAATGAATGAATAT 58.922 33.333 0.00 0.00 0.00 1.28
3081 9306 5.392919 CCACATACGGAGCAAAATGAATGAA 60.393 40.000 0.00 0.00 0.00 2.57
3082 9307 4.096231 CCACATACGGAGCAAAATGAATGA 59.904 41.667 0.00 0.00 0.00 2.57
3083 9308 4.142403 ACCACATACGGAGCAAAATGAATG 60.142 41.667 0.00 0.00 0.00 2.67
3085 9310 3.417101 ACCACATACGGAGCAAAATGAA 58.583 40.909 0.00 0.00 0.00 2.57
3088 9313 2.290641 TGGACCACATACGGAGCAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
3089 9314 1.072489 TGGACCACATACGGAGCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
3090 9315 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.00 0.00 3.68
3091 9316 0.908910 ATGGACCACATACGGAGCAA 59.091 50.000 0.00 0.00 38.26 3.91
3092 9317 1.686587 CTATGGACCACATACGGAGCA 59.313 52.381 0.00 0.00 41.03 4.26
3093 9318 1.687123 ACTATGGACCACATACGGAGC 59.313 52.381 0.00 0.00 41.03 4.70
3094 9319 5.524971 TTTACTATGGACCACATACGGAG 57.475 43.478 0.00 0.00 41.03 4.63
3095 9320 5.936187 TTTTACTATGGACCACATACGGA 57.064 39.130 0.00 0.00 41.03 4.69
3096 9321 6.522054 AGATTTTACTATGGACCACATACGG 58.478 40.000 0.00 0.00 41.03 4.02
3097 9322 7.434492 AGAGATTTTACTATGGACCACATACG 58.566 38.462 0.00 0.00 41.03 3.06
3098 9323 7.873505 GGAGAGATTTTACTATGGACCACATAC 59.126 40.741 0.00 0.00 41.03 2.39
3099 9324 7.567250 TGGAGAGATTTTACTATGGACCACATA 59.433 37.037 0.00 0.00 41.03 2.29
3100 9325 6.386927 TGGAGAGATTTTACTATGGACCACAT 59.613 38.462 0.00 0.00 43.68 3.21
3101 9326 5.724370 TGGAGAGATTTTACTATGGACCACA 59.276 40.000 0.00 0.00 0.00 4.17
3102 9327 6.235231 TGGAGAGATTTTACTATGGACCAC 57.765 41.667 0.00 0.00 0.00 4.16
3103 9328 6.884472 TTGGAGAGATTTTACTATGGACCA 57.116 37.500 0.00 0.00 0.00 4.02
3105 9330 8.261522 AGTCTTTGGAGAGATTTTACTATGGAC 58.738 37.037 0.00 0.00 31.07 4.02
3106 9331 8.380742 AGTCTTTGGAGAGATTTTACTATGGA 57.619 34.615 0.00 0.00 31.07 3.41
3117 9342 9.372369 CGTTTCTAAATAAGTCTTTGGAGAGAT 57.628 33.333 0.00 0.00 31.07 2.75
3118 9343 7.817962 CCGTTTCTAAATAAGTCTTTGGAGAGA 59.182 37.037 0.00 0.00 31.07 3.10
3119 9344 7.817962 TCCGTTTCTAAATAAGTCTTTGGAGAG 59.182 37.037 0.00 0.00 31.07 3.20
3121 9346 7.064728 CCTCCGTTTCTAAATAAGTCTTTGGAG 59.935 40.741 0.00 0.00 37.18 3.86
3123 9348 6.093633 CCCTCCGTTTCTAAATAAGTCTTTGG 59.906 42.308 0.00 0.00 0.00 3.28
3124 9349 6.877322 TCCCTCCGTTTCTAAATAAGTCTTTG 59.123 38.462 0.00 0.00 0.00 2.77
3125 9350 7.012661 TCCCTCCGTTTCTAAATAAGTCTTT 57.987 36.000 0.00 0.00 0.00 2.52
3126 9351 6.212993 ACTCCCTCCGTTTCTAAATAAGTCTT 59.787 38.462 0.00 0.00 0.00 3.01
3127 9352 5.720520 ACTCCCTCCGTTTCTAAATAAGTCT 59.279 40.000 0.00 0.00 0.00 3.24
3128 9353 5.975282 ACTCCCTCCGTTTCTAAATAAGTC 58.025 41.667 0.00 0.00 0.00 3.01
3129 9354 7.672122 ATACTCCCTCCGTTTCTAAATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3134 9359 8.537728 TGTAATATACTCCCTCCGTTTCTAAA 57.462 34.615 0.00 0.00 0.00 1.85
3135 9360 7.781693 ACTGTAATATACTCCCTCCGTTTCTAA 59.218 37.037 0.00 0.00 0.00 2.10
3136 9361 7.293073 ACTGTAATATACTCCCTCCGTTTCTA 58.707 38.462 0.00 0.00 0.00 2.10
3139 9364 6.835488 TGTACTGTAATATACTCCCTCCGTTT 59.165 38.462 0.00 0.00 0.00 3.60
3140 9365 6.264067 GTGTACTGTAATATACTCCCTCCGTT 59.736 42.308 0.00 0.00 0.00 4.44
3141 9366 5.767168 GTGTACTGTAATATACTCCCTCCGT 59.233 44.000 0.00 0.00 0.00 4.69
3145 9370 9.742144 CTCATAGTGTACTGTAATATACTCCCT 57.258 37.037 0.00 0.00 30.16 4.20
3153 9378 9.901172 TCTTCAGACTCATAGTGTACTGTAATA 57.099 33.333 0.00 0.00 0.00 0.98
3154 9379 8.809468 TCTTCAGACTCATAGTGTACTGTAAT 57.191 34.615 0.00 0.00 0.00 1.89
3155 9380 8.631480 TTCTTCAGACTCATAGTGTACTGTAA 57.369 34.615 0.00 0.00 0.00 2.41
3158 10042 6.033341 GCTTCTTCAGACTCATAGTGTACTG 58.967 44.000 0.00 0.00 0.00 2.74
3160 10044 5.955488 TGCTTCTTCAGACTCATAGTGTAC 58.045 41.667 0.00 0.00 0.00 2.90
3163 10047 5.477510 ACTTGCTTCTTCAGACTCATAGTG 58.522 41.667 0.00 0.00 0.00 2.74
3182 10066 4.576463 AGTTTTCAGCAGGTTAGTGACTTG 59.424 41.667 0.00 0.00 38.32 3.16
3228 10113 2.289002 CAGGCGGCAATCTGAACTAATC 59.711 50.000 13.08 0.00 33.11 1.75
3232 10117 1.377725 CCAGGCGGCAATCTGAACT 60.378 57.895 13.08 0.00 33.11 3.01
3233 10118 0.960364 TTCCAGGCGGCAATCTGAAC 60.960 55.000 13.08 0.00 33.11 3.18
3234 10119 0.034186 ATTCCAGGCGGCAATCTGAA 60.034 50.000 13.08 6.44 33.11 3.02
3236 10121 1.334869 GTTATTCCAGGCGGCAATCTG 59.665 52.381 13.08 0.00 0.00 2.90
3245 10130 3.942115 GAGAACTGAAGGTTATTCCAGGC 59.058 47.826 0.00 0.00 38.41 4.85
3253 10138 4.381612 CCAGTATGCGAGAACTGAAGGTTA 60.382 45.833 11.61 0.00 44.79 2.85
3313 10199 2.846206 TCCCTTGATGCTAGTGTGGATT 59.154 45.455 0.00 0.00 0.00 3.01
3420 10331 6.094048 CCAAAACTGATGACCCATTGTAGTAG 59.906 42.308 0.00 0.00 0.00 2.57
3474 10393 6.040842 GTGCCATCTGATTTGGTAATGGTAAT 59.959 38.462 0.00 0.00 39.27 1.89
3475 10394 5.359576 GTGCCATCTGATTTGGTAATGGTAA 59.640 40.000 0.00 0.00 39.27 2.85
3476 10395 4.887071 GTGCCATCTGATTTGGTAATGGTA 59.113 41.667 0.00 0.00 39.27 3.25
3477 10396 3.701040 GTGCCATCTGATTTGGTAATGGT 59.299 43.478 0.00 0.00 39.27 3.55
3478 10397 3.956199 AGTGCCATCTGATTTGGTAATGG 59.044 43.478 0.00 0.00 39.90 3.16
3479 10398 4.400251 ACAGTGCCATCTGATTTGGTAATG 59.600 41.667 12.26 12.26 46.16 1.90
3526 10447 1.456296 TTGCATGACAGTGCCATCTC 58.544 50.000 0.00 0.00 44.43 2.75
3548 10469 3.963665 TGTAGCAAAAGTGTGTGAATGC 58.036 40.909 0.00 0.00 0.00 3.56
3589 10519 8.386606 TGTAAAACAAATTTGACTGCAATCAAC 58.613 29.630 24.64 0.00 38.31 3.18
3609 10539 3.186817 CGTATGGTCGTGCCTTTGTAAAA 59.813 43.478 1.06 0.00 38.35 1.52
3631 10569 1.669265 GGCGTTGGGTTAATCAGTAGC 59.331 52.381 0.00 0.00 0.00 3.58
3663 10602 1.029681 AAGAAGAAACCGCCCAACAC 58.970 50.000 0.00 0.00 0.00 3.32
3745 10716 1.790387 CAGTAGCAAACGCTCCAGC 59.210 57.895 0.00 0.00 41.09 4.85
3753 10724 1.826385 ACATGGGAGCAGTAGCAAAC 58.174 50.000 0.00 0.00 45.49 2.93
3777 10766 1.292223 GACCCGCTGCACTGAAGTA 59.708 57.895 0.00 0.00 0.00 2.24
3778 10767 2.031163 GACCCGCTGCACTGAAGT 59.969 61.111 0.00 0.00 0.00 3.01
3779 10768 2.031012 TGACCCGCTGCACTGAAG 59.969 61.111 0.00 0.00 0.00 3.02
3780 10769 2.031012 CTGACCCGCTGCACTGAA 59.969 61.111 0.00 0.00 0.00 3.02
3781 10770 4.007644 CCTGACCCGCTGCACTGA 62.008 66.667 0.00 0.00 0.00 3.41
3866 10862 1.676678 CCGAGGCCGAGATGAAGGAA 61.677 60.000 0.00 0.00 38.22 3.36
3983 10979 7.004691 ACTCTGTAGTATGTACTGATGCCATA 58.995 38.462 3.00 0.00 37.10 2.74
3984 10986 5.835819 ACTCTGTAGTATGTACTGATGCCAT 59.164 40.000 3.00 0.00 37.10 4.40
3998 11002 5.316167 TCCGGTTGAACTTACTCTGTAGTA 58.684 41.667 0.00 0.00 37.15 1.82
4052 11082 4.151689 ACGATGGTGAGTGTAACATTTTCG 59.848 41.667 0.00 0.00 41.43 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.