Multiple sequence alignment - TraesCS2B01G402800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G402800 chr2B 100.000 4241 0 0 1 4241 571344586 571348826 0.000000e+00 7832
1 TraesCS2B01G402800 chr2B 83.549 1471 140 47 896 2328 572180177 572178771 0.000000e+00 1282
2 TraesCS2B01G402800 chr2B 83.487 1302 158 33 2349 3632 572178783 572177521 0.000000e+00 1160
3 TraesCS2B01G402800 chr2B 86.538 936 77 26 2722 3632 572312644 572311733 0.000000e+00 985
4 TraesCS2B01G402800 chr2B 83.181 1094 109 41 1563 2637 572313778 572312741 0.000000e+00 931
5 TraesCS2B01G402800 chr2B 97.746 355 7 1 3 356 659018008 659017654 1.010000e-170 610
6 TraesCS2B01G402800 chr2B 88.914 442 36 9 1084 1521 572314291 572313859 2.240000e-147 532
7 TraesCS2B01G402800 chr2B 95.312 320 11 1 673 988 572314608 572314289 4.890000e-139 505
8 TraesCS2B01G402800 chr2B 81.281 406 54 12 1843 2235 572324549 572324153 4.120000e-80 309
9 TraesCS2B01G402800 chr2B 83.626 171 19 5 3325 3488 548939694 548939526 7.340000e-33 152
10 TraesCS2B01G402800 chr2A 92.509 2296 109 34 1973 4241 631856183 631858442 0.000000e+00 3229
11 TraesCS2B01G402800 chr2A 91.892 1184 70 10 366 1523 631854488 631855671 0.000000e+00 1631
12 TraesCS2B01G402800 chr2A 83.245 1325 130 54 2349 3632 632588060 632586787 0.000000e+00 1133
13 TraesCS2B01G402800 chr2A 84.860 1070 120 19 2370 3408 46336708 46337766 0.000000e+00 1040
14 TraesCS2B01G402800 chr2A 85.442 838 55 32 721 1521 632589795 632588988 0.000000e+00 809
15 TraesCS2B01G402800 chr2A 85.899 695 63 18 1590 2262 632588884 632588203 0.000000e+00 708
16 TraesCS2B01G402800 chr2A 92.268 388 24 3 1586 1972 631855769 631856151 2.880000e-151 545
17 TraesCS2B01G402800 chr2A 86.631 187 25 0 1569 1755 632595168 632594982 1.550000e-49 207
18 TraesCS2B01G402800 chr2A 78.512 363 42 23 902 1241 632596477 632596128 5.560000e-49 206
19 TraesCS2B01G402800 chr2D 93.564 1911 94 13 2349 4241 486391694 486393593 0.000000e+00 2820
20 TraesCS2B01G402800 chr2D 83.890 3023 282 112 717 3632 487935097 487932173 0.000000e+00 2695
21 TraesCS2B01G402800 chr2D 89.005 2010 108 37 366 2332 486389771 486391710 0.000000e+00 2383
22 TraesCS2B01G402800 chr2D 83.401 1476 147 49 896 2332 487725390 487723974 0.000000e+00 1279
23 TraesCS2B01G402800 chr2D 84.385 1236 131 38 2349 3567 487723990 487722800 0.000000e+00 1157
24 TraesCS2B01G402800 chr2D 81.457 1483 178 52 892 2338 487594609 487593188 0.000000e+00 1125
25 TraesCS2B01G402800 chr2D 81.876 469 68 7 2349 2812 487593210 487592754 3.090000e-101 379
26 TraesCS2B01G402800 chr2D 79.830 352 40 17 902 1240 488059614 488059281 1.190000e-55 228
27 TraesCS2B01G402800 chr7D 85.075 1072 116 19 2370 3408 446551161 446550101 0.000000e+00 1053
28 TraesCS2B01G402800 chr3B 84.256 1048 113 22 2370 3379 555550643 555549610 0.000000e+00 974
29 TraesCS2B01G402800 chr3B 82.933 416 56 12 1840 2248 555551108 555550701 1.120000e-95 361
30 TraesCS2B01G402800 chr4B 84.160 1048 114 22 2370 3379 16787156 16788189 0.000000e+00 968
31 TraesCS2B01G402800 chr4B 97.740 354 7 1 3 355 629957568 629957921 3.630000e-170 608
32 TraesCS2B01G402800 chr4B 83.173 416 55 12 1840 2248 16786691 16787098 2.410000e-97 366
33 TraesCS2B01G402800 chr3D 84.493 877 92 19 2565 3408 16449271 16450136 0.000000e+00 826
34 TraesCS2B01G402800 chrUn 97.753 356 7 1 3 357 264393955 264394310 2.800000e-171 612
35 TraesCS2B01G402800 chr6B 97.746 355 7 1 3 356 21063683 21064037 1.010000e-170 610
36 TraesCS2B01G402800 chr6B 96.175 366 13 1 3 367 195274886 195274521 7.850000e-167 597
37 TraesCS2B01G402800 chr1B 97.746 355 7 1 3 356 269218625 269218271 1.010000e-170 610
38 TraesCS2B01G402800 chr7B 96.175 366 13 1 3 367 74093038 74092673 7.850000e-167 597
39 TraesCS2B01G402800 chr5A 96.175 366 13 1 3 367 597837953 597837588 7.850000e-167 597
40 TraesCS2B01G402800 chr3A 96.175 366 12 2 3 367 60294118 60293754 7.850000e-167 597
41 TraesCS2B01G402800 chr6A 86.472 377 37 10 3268 3632 226334905 226334531 6.610000e-108 401
42 TraesCS2B01G402800 chr7A 90.187 214 20 1 2021 2233 321636924 321636711 1.160000e-70 278


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G402800 chr2B 571344586 571348826 4240 False 7832.000000 7832 100.00000 1 4241 1 chr2B.!!$F1 4240
1 TraesCS2B01G402800 chr2B 572177521 572180177 2656 True 1221.000000 1282 83.51800 896 3632 2 chr2B.!!$R4 2736
2 TraesCS2B01G402800 chr2B 572311733 572314608 2875 True 738.250000 985 88.48625 673 3632 4 chr2B.!!$R5 2959
3 TraesCS2B01G402800 chr2A 631854488 631858442 3954 False 1801.666667 3229 92.22300 366 4241 3 chr2A.!!$F2 3875
4 TraesCS2B01G402800 chr2A 46336708 46337766 1058 False 1040.000000 1040 84.86000 2370 3408 1 chr2A.!!$F1 1038
5 TraesCS2B01G402800 chr2A 632586787 632589795 3008 True 883.333333 1133 84.86200 721 3632 3 chr2A.!!$R1 2911
6 TraesCS2B01G402800 chr2A 632594982 632596477 1495 True 206.500000 207 82.57150 902 1755 2 chr2A.!!$R2 853
7 TraesCS2B01G402800 chr2D 487932173 487935097 2924 True 2695.000000 2695 83.89000 717 3632 1 chr2D.!!$R1 2915
8 TraesCS2B01G402800 chr2D 486389771 486393593 3822 False 2601.500000 2820 91.28450 366 4241 2 chr2D.!!$F1 3875
9 TraesCS2B01G402800 chr2D 487722800 487725390 2590 True 1218.000000 1279 83.89300 896 3567 2 chr2D.!!$R4 2671
10 TraesCS2B01G402800 chr2D 487592754 487594609 1855 True 752.000000 1125 81.66650 892 2812 2 chr2D.!!$R3 1920
11 TraesCS2B01G402800 chr7D 446550101 446551161 1060 True 1053.000000 1053 85.07500 2370 3408 1 chr7D.!!$R1 1038
12 TraesCS2B01G402800 chr3B 555549610 555551108 1498 True 667.500000 974 83.59450 1840 3379 2 chr3B.!!$R1 1539
13 TraesCS2B01G402800 chr4B 16786691 16788189 1498 False 667.000000 968 83.66650 1840 3379 2 chr4B.!!$F2 1539
14 TraesCS2B01G402800 chr3D 16449271 16450136 865 False 826.000000 826 84.49300 2565 3408 1 chr3D.!!$F1 843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 272 0.169672 GGTGCTTGTAGTCGTCGCTA 59.830 55.000 0.0 0.0 0.00 4.26 F
279 280 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.0 0.0 0.00 3.85 F
281 282 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.0 0.0 0.00 2.59 F
325 326 0.687920 TGGTATTCGTTGGACTGCCA 59.312 50.000 0.0 0.0 44.17 4.92 F
332 333 1.003003 TCGTTGGACTGCCATGATTGA 59.997 47.619 0.0 0.0 45.46 2.57 F
641 644 1.153188 TTCCGTGCGATGGATGCAT 60.153 52.632 0.0 0.0 45.34 3.96 F
1888 2771 1.376543 ATGCTGGCGACTTCATCAAG 58.623 50.000 0.0 0.0 35.50 3.02 F
2896 3978 0.106708 TCCTTCAGTGCTTGACGCTT 59.893 50.000 0.0 0.0 36.85 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1444 2122 0.821711 CACGCCTTGGGTTTTCAGGA 60.822 55.000 0.00 0.00 0.00 3.86 R
2050 2978 1.536766 TCAAAGATGCTGCCACTTTCG 59.463 47.619 14.81 11.72 32.59 3.46 R
2294 3328 4.336433 GGTTCAGAATAGCAAGCAAGCATA 59.664 41.667 3.19 0.00 36.85 3.14 R
2342 3376 0.695924 TGGGATCGAATGGTGGTTGT 59.304 50.000 0.00 0.00 0.00 3.32 R
2344 3378 0.991920 AGTGGGATCGAATGGTGGTT 59.008 50.000 0.00 0.00 0.00 3.67 R
2346 3380 3.275617 TTAAGTGGGATCGAATGGTGG 57.724 47.619 0.00 0.00 0.00 4.61 R
3078 4178 1.189752 ACTGAGTGAGTGATCCGCAT 58.810 50.000 0.00 0.00 31.75 4.73 R
3802 4979 2.930950 TGGAAGTTCAACTCCAACCAG 58.069 47.619 5.01 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.311110 GGAGGTGTGTCTCCGGCA 61.311 66.667 0.00 0.00 43.19 5.69
22 23 2.262915 GAGGTGTGTCTCCGGCAG 59.737 66.667 0.00 0.00 0.00 4.85
23 24 2.203640 AGGTGTGTCTCCGGCAGA 60.204 61.111 0.00 0.00 0.00 4.26
24 25 1.608717 GAGGTGTGTCTCCGGCAGAT 61.609 60.000 0.00 0.00 32.08 2.90
25 26 1.153549 GGTGTGTCTCCGGCAGATC 60.154 63.158 0.00 0.04 32.08 2.75
26 27 1.608717 GGTGTGTCTCCGGCAGATCT 61.609 60.000 0.00 0.00 32.08 2.75
27 28 1.103803 GTGTGTCTCCGGCAGATCTA 58.896 55.000 0.00 0.00 32.08 1.98
28 29 1.683917 GTGTGTCTCCGGCAGATCTAT 59.316 52.381 0.00 0.00 32.08 1.98
29 30 1.957177 TGTGTCTCCGGCAGATCTATC 59.043 52.381 0.00 0.00 32.08 2.08
30 31 2.235016 GTGTCTCCGGCAGATCTATCT 58.765 52.381 0.00 0.00 37.72 1.98
31 32 2.625790 GTGTCTCCGGCAGATCTATCTT 59.374 50.000 0.00 0.00 34.22 2.40
32 33 3.068873 GTGTCTCCGGCAGATCTATCTTT 59.931 47.826 0.00 0.00 34.22 2.52
33 34 3.068732 TGTCTCCGGCAGATCTATCTTTG 59.931 47.826 0.00 0.00 34.22 2.77
34 35 2.630098 TCTCCGGCAGATCTATCTTTGG 59.370 50.000 0.00 0.00 34.22 3.28
35 36 2.366916 CTCCGGCAGATCTATCTTTGGT 59.633 50.000 0.00 0.00 34.22 3.67
36 37 2.103094 TCCGGCAGATCTATCTTTGGTG 59.897 50.000 0.00 0.00 34.22 4.17
37 38 2.487934 CGGCAGATCTATCTTTGGTGG 58.512 52.381 0.00 0.00 34.22 4.61
38 39 2.103094 CGGCAGATCTATCTTTGGTGGA 59.897 50.000 0.00 0.00 34.22 4.02
39 40 3.244353 CGGCAGATCTATCTTTGGTGGAT 60.244 47.826 0.00 0.00 34.22 3.41
40 41 4.723309 GGCAGATCTATCTTTGGTGGATT 58.277 43.478 0.00 0.00 34.22 3.01
41 42 5.136105 GGCAGATCTATCTTTGGTGGATTT 58.864 41.667 0.00 0.00 34.22 2.17
42 43 5.009410 GGCAGATCTATCTTTGGTGGATTTG 59.991 44.000 0.00 0.00 34.22 2.32
43 44 5.506982 GCAGATCTATCTTTGGTGGATTTGC 60.507 44.000 0.00 4.53 37.36 3.68
44 45 5.826737 CAGATCTATCTTTGGTGGATTTGCT 59.173 40.000 0.00 0.00 34.22 3.91
45 46 6.017275 CAGATCTATCTTTGGTGGATTTGCTC 60.017 42.308 0.00 0.00 34.22 4.26
46 47 5.178096 TCTATCTTTGGTGGATTTGCTCA 57.822 39.130 0.00 0.00 0.00 4.26
47 48 5.188434 TCTATCTTTGGTGGATTTGCTCAG 58.812 41.667 0.00 0.00 0.00 3.35
48 49 3.507162 TCTTTGGTGGATTTGCTCAGA 57.493 42.857 0.00 0.00 0.00 3.27
49 50 4.038271 TCTTTGGTGGATTTGCTCAGAT 57.962 40.909 0.00 0.00 0.00 2.90
50 51 4.012374 TCTTTGGTGGATTTGCTCAGATC 58.988 43.478 0.00 0.00 0.00 2.75
51 52 3.726557 TTGGTGGATTTGCTCAGATCT 57.273 42.857 0.00 0.00 0.00 2.75
52 53 3.272574 TGGTGGATTTGCTCAGATCTC 57.727 47.619 0.00 0.00 0.00 2.75
53 54 2.208431 GGTGGATTTGCTCAGATCTCG 58.792 52.381 0.00 0.00 0.00 4.04
54 55 2.419297 GGTGGATTTGCTCAGATCTCGT 60.419 50.000 0.00 0.00 0.00 4.18
55 56 2.863137 GTGGATTTGCTCAGATCTCGTC 59.137 50.000 0.00 0.00 0.00 4.20
56 57 2.123342 GGATTTGCTCAGATCTCGTCG 58.877 52.381 0.00 0.00 0.00 5.12
57 58 2.480416 GGATTTGCTCAGATCTCGTCGT 60.480 50.000 0.00 0.00 0.00 4.34
58 59 2.724977 TTTGCTCAGATCTCGTCGTT 57.275 45.000 0.00 0.00 0.00 3.85
59 60 1.982612 TTGCTCAGATCTCGTCGTTG 58.017 50.000 0.00 0.00 0.00 4.10
60 61 0.881796 TGCTCAGATCTCGTCGTTGT 59.118 50.000 0.00 0.00 0.00 3.32
61 62 1.269723 TGCTCAGATCTCGTCGTTGTT 59.730 47.619 0.00 0.00 0.00 2.83
62 63 1.914700 GCTCAGATCTCGTCGTTGTTC 59.085 52.381 0.00 0.00 0.00 3.18
63 64 2.169974 CTCAGATCTCGTCGTTGTTCG 58.830 52.381 0.00 0.00 41.41 3.95
64 65 1.534163 TCAGATCTCGTCGTTGTTCGT 59.466 47.619 0.00 0.00 40.80 3.85
65 66 1.905687 CAGATCTCGTCGTTGTTCGTC 59.094 52.381 0.00 0.00 40.80 4.20
66 67 1.805345 AGATCTCGTCGTTGTTCGTCT 59.195 47.619 0.00 0.00 40.80 4.18
67 68 2.998670 AGATCTCGTCGTTGTTCGTCTA 59.001 45.455 0.00 0.00 40.80 2.59
68 69 3.622163 AGATCTCGTCGTTGTTCGTCTAT 59.378 43.478 0.00 0.00 40.80 1.98
69 70 3.113325 TCTCGTCGTTGTTCGTCTATG 57.887 47.619 0.00 0.00 40.80 2.23
70 71 2.481568 TCTCGTCGTTGTTCGTCTATGT 59.518 45.455 0.00 0.00 40.80 2.29
71 72 3.058708 TCTCGTCGTTGTTCGTCTATGTT 60.059 43.478 0.00 0.00 40.80 2.71
72 73 3.228749 TCGTCGTTGTTCGTCTATGTTC 58.771 45.455 0.00 0.00 40.80 3.18
73 74 2.024875 CGTCGTTGTTCGTCTATGTTCG 59.975 50.000 0.00 0.00 40.80 3.95
74 75 2.975851 GTCGTTGTTCGTCTATGTTCGT 59.024 45.455 0.00 0.00 40.80 3.85
75 76 2.975193 TCGTTGTTCGTCTATGTTCGTG 59.025 45.455 0.00 0.00 40.80 4.35
76 77 2.722629 CGTTGTTCGTCTATGTTCGTGT 59.277 45.455 0.00 0.00 34.52 4.49
77 78 3.420035 CGTTGTTCGTCTATGTTCGTGTG 60.420 47.826 0.00 0.00 34.52 3.82
78 79 3.358707 TGTTCGTCTATGTTCGTGTGT 57.641 42.857 0.00 0.00 0.00 3.72
79 80 3.302555 TGTTCGTCTATGTTCGTGTGTC 58.697 45.455 0.00 0.00 0.00 3.67
80 81 3.004002 TGTTCGTCTATGTTCGTGTGTCT 59.996 43.478 0.00 0.00 0.00 3.41
81 82 3.909776 TCGTCTATGTTCGTGTGTCTT 57.090 42.857 0.00 0.00 0.00 3.01
82 83 3.818387 TCGTCTATGTTCGTGTGTCTTC 58.182 45.455 0.00 0.00 0.00 2.87
83 84 2.588539 CGTCTATGTTCGTGTGTCTTCG 59.411 50.000 0.00 0.00 0.00 3.79
84 85 2.915463 GTCTATGTTCGTGTGTCTTCGG 59.085 50.000 0.00 0.00 0.00 4.30
85 86 2.555325 TCTATGTTCGTGTGTCTTCGGT 59.445 45.455 0.00 0.00 0.00 4.69
86 87 2.234300 ATGTTCGTGTGTCTTCGGTT 57.766 45.000 0.00 0.00 0.00 4.44
87 88 2.012937 TGTTCGTGTGTCTTCGGTTT 57.987 45.000 0.00 0.00 0.00 3.27
88 89 1.661617 TGTTCGTGTGTCTTCGGTTTG 59.338 47.619 0.00 0.00 0.00 2.93
89 90 1.004292 GTTCGTGTGTCTTCGGTTTGG 60.004 52.381 0.00 0.00 0.00 3.28
90 91 0.460722 TCGTGTGTCTTCGGTTTGGA 59.539 50.000 0.00 0.00 0.00 3.53
91 92 1.069513 TCGTGTGTCTTCGGTTTGGAT 59.930 47.619 0.00 0.00 0.00 3.41
92 93 1.459592 CGTGTGTCTTCGGTTTGGATC 59.540 52.381 0.00 0.00 0.00 3.36
93 94 1.804748 GTGTGTCTTCGGTTTGGATCC 59.195 52.381 4.20 4.20 0.00 3.36
94 95 1.697432 TGTGTCTTCGGTTTGGATCCT 59.303 47.619 14.23 0.00 0.00 3.24
95 96 2.105821 TGTGTCTTCGGTTTGGATCCTT 59.894 45.455 14.23 0.00 0.00 3.36
96 97 2.742589 GTGTCTTCGGTTTGGATCCTTC 59.257 50.000 14.23 3.17 0.00 3.46
97 98 2.290071 TGTCTTCGGTTTGGATCCTTCC 60.290 50.000 14.23 11.29 42.94 3.46
98 99 1.066430 TCTTCGGTTTGGATCCTTCCG 60.066 52.381 25.49 25.49 45.89 4.30
99 100 0.978151 TTCGGTTTGGATCCTTCCGA 59.022 50.000 28.02 28.02 45.89 4.55
100 101 1.200519 TCGGTTTGGATCCTTCCGAT 58.799 50.000 28.02 0.00 45.89 4.18
101 102 1.138266 TCGGTTTGGATCCTTCCGATC 59.862 52.381 28.02 9.18 45.89 3.69
102 103 1.139058 CGGTTTGGATCCTTCCGATCT 59.861 52.381 26.55 0.00 45.90 2.75
103 104 2.364324 CGGTTTGGATCCTTCCGATCTA 59.636 50.000 26.55 0.00 45.90 1.98
104 105 3.729966 GGTTTGGATCCTTCCGATCTAC 58.270 50.000 14.23 0.00 45.90 2.59
105 106 3.381949 GTTTGGATCCTTCCGATCTACG 58.618 50.000 14.23 0.00 45.90 3.51
106 107 2.359981 TGGATCCTTCCGATCTACGT 57.640 50.000 14.23 0.00 45.90 3.57
107 108 2.662866 TGGATCCTTCCGATCTACGTT 58.337 47.619 14.23 0.00 45.90 3.99
108 109 3.824133 TGGATCCTTCCGATCTACGTTA 58.176 45.455 14.23 0.00 45.90 3.18
109 110 4.404640 TGGATCCTTCCGATCTACGTTAT 58.595 43.478 14.23 0.00 45.90 1.89
110 111 4.831155 TGGATCCTTCCGATCTACGTTATT 59.169 41.667 14.23 0.00 45.90 1.40
111 112 5.303589 TGGATCCTTCCGATCTACGTTATTT 59.696 40.000 14.23 0.00 45.90 1.40
112 113 6.183360 TGGATCCTTCCGATCTACGTTATTTT 60.183 38.462 14.23 0.00 45.90 1.82
113 114 6.704937 GGATCCTTCCGATCTACGTTATTTTT 59.295 38.462 3.84 0.00 45.90 1.94
114 115 7.095732 GGATCCTTCCGATCTACGTTATTTTTC 60.096 40.741 3.84 0.00 45.90 2.29
115 116 6.632909 TCCTTCCGATCTACGTTATTTTTCA 58.367 36.000 0.00 0.00 40.78 2.69
116 117 7.270047 TCCTTCCGATCTACGTTATTTTTCAT 58.730 34.615 0.00 0.00 40.78 2.57
117 118 7.437267 TCCTTCCGATCTACGTTATTTTTCATC 59.563 37.037 0.00 0.00 40.78 2.92
118 119 6.742999 TCCGATCTACGTTATTTTTCATCG 57.257 37.500 0.00 0.00 40.78 3.84
119 120 5.901509 CCGATCTACGTTATTTTTCATCGG 58.098 41.667 0.00 2.86 43.93 4.18
120 121 5.363517 CGATCTACGTTATTTTTCATCGGC 58.636 41.667 0.00 0.00 37.22 5.54
121 122 4.765281 TCTACGTTATTTTTCATCGGCG 57.235 40.909 0.00 0.00 0.00 6.46
122 123 2.817538 ACGTTATTTTTCATCGGCGG 57.182 45.000 7.21 0.00 0.00 6.13
123 124 1.202098 ACGTTATTTTTCATCGGCGGC 60.202 47.619 7.21 0.00 0.00 6.53
124 125 1.462791 GTTATTTTTCATCGGCGGCG 58.537 50.000 27.15 27.15 0.00 6.46
125 126 0.378962 TTATTTTTCATCGGCGGCGG 59.621 50.000 31.73 16.54 0.00 6.13
126 127 0.745128 TATTTTTCATCGGCGGCGGT 60.745 50.000 31.73 23.77 0.00 5.68
127 128 1.591504 ATTTTTCATCGGCGGCGGTT 61.592 50.000 31.73 16.58 0.00 4.44
128 129 2.465097 TTTTTCATCGGCGGCGGTTG 62.465 55.000 31.73 26.46 0.00 3.77
137 138 3.726517 CGGCGGTTGCTGTTCTGG 61.727 66.667 0.00 0.00 42.79 3.86
138 139 3.365265 GGCGGTTGCTGTTCTGGG 61.365 66.667 0.00 0.00 42.25 4.45
139 140 3.365265 GCGGTTGCTGTTCTGGGG 61.365 66.667 0.00 0.00 38.39 4.96
140 141 2.113139 CGGTTGCTGTTCTGGGGT 59.887 61.111 0.00 0.00 0.00 4.95
141 142 2.260869 CGGTTGCTGTTCTGGGGTG 61.261 63.158 0.00 0.00 0.00 4.61
142 143 2.564721 GGTTGCTGTTCTGGGGTGC 61.565 63.158 0.00 0.00 0.00 5.01
143 144 1.529244 GTTGCTGTTCTGGGGTGCT 60.529 57.895 0.00 0.00 0.00 4.40
144 145 1.529010 TTGCTGTTCTGGGGTGCTG 60.529 57.895 0.00 0.00 0.00 4.41
145 146 2.674380 GCTGTTCTGGGGTGCTGG 60.674 66.667 0.00 0.00 0.00 4.85
146 147 2.839098 CTGTTCTGGGGTGCTGGT 59.161 61.111 0.00 0.00 0.00 4.00
147 148 1.302832 CTGTTCTGGGGTGCTGGTC 60.303 63.158 0.00 0.00 0.00 4.02
148 149 2.034221 GTTCTGGGGTGCTGGTCC 59.966 66.667 0.00 0.00 0.00 4.46
149 150 2.121963 TTCTGGGGTGCTGGTCCT 60.122 61.111 0.00 0.00 0.00 3.85
150 151 1.159905 TTCTGGGGTGCTGGTCCTA 59.840 57.895 0.00 0.00 0.00 2.94
151 152 0.253160 TTCTGGGGTGCTGGTCCTAT 60.253 55.000 0.00 0.00 0.00 2.57
152 153 0.982852 TCTGGGGTGCTGGTCCTATG 60.983 60.000 0.00 0.00 0.00 2.23
153 154 0.982852 CTGGGGTGCTGGTCCTATGA 60.983 60.000 0.00 0.00 0.00 2.15
154 155 0.982852 TGGGGTGCTGGTCCTATGAG 60.983 60.000 0.00 0.00 0.00 2.90
155 156 1.700042 GGGGTGCTGGTCCTATGAGG 61.700 65.000 0.00 0.00 36.46 3.86
156 157 1.147153 GGTGCTGGTCCTATGAGGC 59.853 63.158 0.00 0.00 34.61 4.70
157 158 1.147153 GTGCTGGTCCTATGAGGCC 59.853 63.158 0.00 0.00 34.61 5.19
158 159 1.003442 TGCTGGTCCTATGAGGCCT 59.997 57.895 3.86 3.86 34.61 5.19
159 160 0.621571 TGCTGGTCCTATGAGGCCTT 60.622 55.000 6.77 0.00 34.61 4.35
160 161 1.343985 TGCTGGTCCTATGAGGCCTTA 60.344 52.381 6.77 1.66 34.61 2.69
161 162 1.346068 GCTGGTCCTATGAGGCCTTAG 59.654 57.143 6.77 5.46 34.61 2.18
162 163 1.346068 CTGGTCCTATGAGGCCTTAGC 59.654 57.143 6.77 0.00 34.61 3.09
163 164 1.343985 TGGTCCTATGAGGCCTTAGCA 60.344 52.381 6.77 0.00 42.56 3.49
164 165 1.070914 GGTCCTATGAGGCCTTAGCAC 59.929 57.143 6.77 1.09 42.56 4.40
165 166 1.040646 TCCTATGAGGCCTTAGCACG 58.959 55.000 6.77 0.00 42.56 5.34
166 167 1.040646 CCTATGAGGCCTTAGCACGA 58.959 55.000 6.77 0.00 42.56 4.35
167 168 1.269831 CCTATGAGGCCTTAGCACGAC 60.270 57.143 6.77 0.00 42.56 4.34
168 169 0.384309 TATGAGGCCTTAGCACGACG 59.616 55.000 6.77 0.00 42.56 5.12
169 170 1.320344 ATGAGGCCTTAGCACGACGA 61.320 55.000 6.77 0.00 42.56 4.20
170 171 1.516603 GAGGCCTTAGCACGACGAC 60.517 63.158 6.77 0.00 42.56 4.34
171 172 1.935327 GAGGCCTTAGCACGACGACT 61.935 60.000 6.77 0.59 42.56 4.18
172 173 1.080025 GGCCTTAGCACGACGACTT 60.080 57.895 0.00 0.00 42.56 3.01
173 174 1.077089 GGCCTTAGCACGACGACTTC 61.077 60.000 0.00 0.00 42.56 3.01
174 175 1.077089 GCCTTAGCACGACGACTTCC 61.077 60.000 0.00 0.00 39.53 3.46
175 176 0.458025 CCTTAGCACGACGACTTCCC 60.458 60.000 0.00 0.00 0.00 3.97
176 177 0.797249 CTTAGCACGACGACTTCCCG 60.797 60.000 0.00 0.00 0.00 5.14
177 178 1.236616 TTAGCACGACGACTTCCCGA 61.237 55.000 0.00 0.00 0.00 5.14
178 179 1.915614 TAGCACGACGACTTCCCGAC 61.916 60.000 0.00 0.00 0.00 4.79
179 180 2.952245 CACGACGACTTCCCGACT 59.048 61.111 0.00 0.00 0.00 4.18
180 181 1.442184 CACGACGACTTCCCGACTG 60.442 63.158 0.00 0.00 0.00 3.51
181 182 1.895707 ACGACGACTTCCCGACTGT 60.896 57.895 0.00 0.00 0.00 3.55
182 183 1.154263 CGACGACTTCCCGACTGTC 60.154 63.158 0.00 0.00 0.00 3.51
183 184 1.575576 CGACGACTTCCCGACTGTCT 61.576 60.000 6.21 0.00 0.00 3.41
184 185 1.446907 GACGACTTCCCGACTGTCTA 58.553 55.000 6.21 0.00 0.00 2.59
185 186 1.130186 GACGACTTCCCGACTGTCTAC 59.870 57.143 6.21 0.00 0.00 2.59
186 187 1.271271 ACGACTTCCCGACTGTCTACT 60.271 52.381 6.21 0.00 0.00 2.57
187 188 2.027745 ACGACTTCCCGACTGTCTACTA 60.028 50.000 6.21 0.00 0.00 1.82
188 189 2.351111 CGACTTCCCGACTGTCTACTAC 59.649 54.545 6.21 0.00 0.00 2.73
189 190 3.341823 GACTTCCCGACTGTCTACTACA 58.658 50.000 6.21 0.00 36.42 2.74
190 191 3.755378 GACTTCCCGACTGTCTACTACAA 59.245 47.826 6.21 0.00 37.74 2.41
191 192 3.505293 ACTTCCCGACTGTCTACTACAAC 59.495 47.826 6.21 0.00 37.74 3.32
192 193 3.144657 TCCCGACTGTCTACTACAACA 57.855 47.619 6.21 0.00 37.74 3.33
193 194 3.489355 TCCCGACTGTCTACTACAACAA 58.511 45.455 6.21 0.00 37.74 2.83
194 195 3.504906 TCCCGACTGTCTACTACAACAAG 59.495 47.826 6.21 0.00 37.74 3.16
195 196 3.255149 CCCGACTGTCTACTACAACAAGT 59.745 47.826 6.21 0.00 37.74 3.16
196 197 4.261909 CCCGACTGTCTACTACAACAAGTT 60.262 45.833 6.21 0.00 37.74 2.66
197 198 4.680110 CCGACTGTCTACTACAACAAGTTG 59.320 45.833 11.16 11.16 45.58 3.16
205 206 3.119193 CAACAAGTTGTGCCGGCT 58.881 55.556 29.70 2.88 35.92 5.52
206 207 1.008538 CAACAAGTTGTGCCGGCTC 60.009 57.895 29.70 25.38 35.92 4.70
207 208 2.193536 AACAAGTTGTGCCGGCTCC 61.194 57.895 29.70 18.65 0.00 4.70
208 209 3.726517 CAAGTTGTGCCGGCTCCG 61.727 66.667 29.70 6.30 39.44 4.63
225 226 4.996434 GGCGATGGAGGGGCGATG 62.996 72.222 0.00 0.00 0.00 3.84
226 227 3.928779 GCGATGGAGGGGCGATGA 61.929 66.667 0.00 0.00 0.00 2.92
227 228 2.029666 CGATGGAGGGGCGATGAC 59.970 66.667 0.00 0.00 0.00 3.06
228 229 2.029666 GATGGAGGGGCGATGACG 59.970 66.667 0.00 0.00 42.93 4.35
229 230 3.521529 GATGGAGGGGCGATGACGG 62.522 68.421 0.00 0.00 40.15 4.79
251 252 3.546397 GCGCCTTCGACTCGCTTC 61.546 66.667 15.17 0.00 44.79 3.86
252 253 3.241059 CGCCTTCGACTCGCTTCG 61.241 66.667 0.00 0.00 40.53 3.79
253 254 2.881352 GCCTTCGACTCGCTTCGG 60.881 66.667 5.78 0.00 39.58 4.30
254 255 2.567049 CCTTCGACTCGCTTCGGT 59.433 61.111 5.78 0.00 39.58 4.69
255 256 1.801913 CCTTCGACTCGCTTCGGTG 60.802 63.158 5.78 0.48 39.58 4.94
256 257 2.430244 TTCGACTCGCTTCGGTGC 60.430 61.111 5.78 0.00 39.58 5.01
257 258 2.804368 CTTCGACTCGCTTCGGTGCT 62.804 60.000 5.78 0.00 39.58 4.40
258 259 2.416244 TTCGACTCGCTTCGGTGCTT 62.416 55.000 5.78 0.00 39.58 3.91
259 260 2.720758 CGACTCGCTTCGGTGCTTG 61.721 63.158 0.00 0.00 35.26 4.01
260 261 1.664965 GACTCGCTTCGGTGCTTGT 60.665 57.895 0.00 0.00 0.00 3.16
261 262 0.388134 GACTCGCTTCGGTGCTTGTA 60.388 55.000 0.00 0.00 0.00 2.41
262 263 0.388649 ACTCGCTTCGGTGCTTGTAG 60.389 55.000 0.00 0.00 0.00 2.74
263 264 0.388649 CTCGCTTCGGTGCTTGTAGT 60.389 55.000 0.00 0.00 0.00 2.73
264 265 0.388134 TCGCTTCGGTGCTTGTAGTC 60.388 55.000 0.00 0.00 0.00 2.59
265 266 1.674611 CGCTTCGGTGCTTGTAGTCG 61.675 60.000 0.00 0.00 0.00 4.18
266 267 0.666577 GCTTCGGTGCTTGTAGTCGT 60.667 55.000 0.00 0.00 0.00 4.34
267 268 1.337821 CTTCGGTGCTTGTAGTCGTC 58.662 55.000 0.00 0.00 0.00 4.20
268 269 0.386352 TTCGGTGCTTGTAGTCGTCG 60.386 55.000 0.00 0.00 0.00 5.12
269 270 2.434134 CGGTGCTTGTAGTCGTCGC 61.434 63.158 0.00 0.00 0.00 5.19
270 271 1.080705 GGTGCTTGTAGTCGTCGCT 60.081 57.895 0.00 0.00 0.00 4.93
271 272 0.169672 GGTGCTTGTAGTCGTCGCTA 59.830 55.000 0.00 0.00 0.00 4.26
272 273 1.536149 GTGCTTGTAGTCGTCGCTAG 58.464 55.000 0.00 0.00 0.00 3.42
273 274 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
274 275 0.450983 GCTTGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.00 0.00 3.08
275 276 1.794437 GCTTGTAGTCGTCGCTAGGTG 60.794 57.143 0.00 0.00 0.00 4.00
276 277 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
277 278 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
278 279 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
279 280 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
280 281 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
281 282 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
282 283 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
283 284 1.086067 CGTCGCTAGGTGGTCTACGA 61.086 60.000 0.00 0.00 32.96 3.43
284 285 1.089920 GTCGCTAGGTGGTCTACGAA 58.910 55.000 0.00 0.00 35.22 3.85
285 286 1.674962 GTCGCTAGGTGGTCTACGAAT 59.325 52.381 0.00 0.00 35.22 3.34
286 287 1.945394 TCGCTAGGTGGTCTACGAATC 59.055 52.381 0.00 0.00 32.69 2.52
287 288 1.948145 CGCTAGGTGGTCTACGAATCT 59.052 52.381 0.00 0.00 0.00 2.40
288 289 2.287069 CGCTAGGTGGTCTACGAATCTG 60.287 54.545 0.00 0.00 0.00 2.90
289 290 2.034812 GCTAGGTGGTCTACGAATCTGG 59.965 54.545 0.00 0.00 0.00 3.86
290 291 2.526888 AGGTGGTCTACGAATCTGGA 57.473 50.000 0.00 0.00 0.00 3.86
291 292 3.033659 AGGTGGTCTACGAATCTGGAT 57.966 47.619 0.00 0.00 0.00 3.41
292 293 2.695666 AGGTGGTCTACGAATCTGGATG 59.304 50.000 0.00 0.00 0.00 3.51
293 294 2.431057 GGTGGTCTACGAATCTGGATGT 59.569 50.000 0.00 0.00 0.00 3.06
294 295 3.635373 GGTGGTCTACGAATCTGGATGTA 59.365 47.826 0.00 0.00 0.00 2.29
295 296 4.098960 GGTGGTCTACGAATCTGGATGTAA 59.901 45.833 0.00 0.00 0.00 2.41
296 297 5.221461 GGTGGTCTACGAATCTGGATGTAAT 60.221 44.000 0.00 0.00 0.00 1.89
297 298 6.281405 GTGGTCTACGAATCTGGATGTAATT 58.719 40.000 0.00 0.00 0.00 1.40
298 299 6.761714 GTGGTCTACGAATCTGGATGTAATTT 59.238 38.462 0.00 0.00 0.00 1.82
299 300 7.280205 GTGGTCTACGAATCTGGATGTAATTTT 59.720 37.037 0.00 0.00 0.00 1.82
300 301 7.827236 TGGTCTACGAATCTGGATGTAATTTTT 59.173 33.333 0.00 0.00 0.00 1.94
301 302 9.321562 GGTCTACGAATCTGGATGTAATTTTTA 57.678 33.333 0.00 0.00 0.00 1.52
320 321 9.634163 AATTTTTATTTCTGGTATTCGTTGGAC 57.366 29.630 0.00 0.00 0.00 4.02
321 322 7.989416 TTTTATTTCTGGTATTCGTTGGACT 57.011 32.000 0.00 0.00 0.00 3.85
322 323 6.978343 TTATTTCTGGTATTCGTTGGACTG 57.022 37.500 0.00 0.00 0.00 3.51
323 324 2.380084 TCTGGTATTCGTTGGACTGC 57.620 50.000 0.00 0.00 0.00 4.40
324 325 1.066430 TCTGGTATTCGTTGGACTGCC 60.066 52.381 0.00 0.00 0.00 4.85
325 326 0.687920 TGGTATTCGTTGGACTGCCA 59.312 50.000 0.00 0.00 44.17 4.92
326 327 1.280710 TGGTATTCGTTGGACTGCCAT 59.719 47.619 0.00 0.00 45.46 4.40
327 328 1.670811 GGTATTCGTTGGACTGCCATG 59.329 52.381 0.00 0.00 45.46 3.66
328 329 2.627945 GTATTCGTTGGACTGCCATGA 58.372 47.619 0.00 0.00 45.46 3.07
329 330 2.425143 ATTCGTTGGACTGCCATGAT 57.575 45.000 0.00 0.00 45.46 2.45
330 331 2.198827 TTCGTTGGACTGCCATGATT 57.801 45.000 0.00 0.00 45.46 2.57
331 332 1.452110 TCGTTGGACTGCCATGATTG 58.548 50.000 0.00 0.00 45.46 2.67
332 333 1.003003 TCGTTGGACTGCCATGATTGA 59.997 47.619 0.00 0.00 45.46 2.57
333 334 1.811965 CGTTGGACTGCCATGATTGAA 59.188 47.619 0.00 0.00 45.46 2.69
334 335 2.159476 CGTTGGACTGCCATGATTGAAG 60.159 50.000 0.00 0.00 45.46 3.02
335 336 3.084039 GTTGGACTGCCATGATTGAAGA 58.916 45.455 0.00 0.00 45.46 2.87
336 337 3.657398 TGGACTGCCATGATTGAAGAT 57.343 42.857 0.00 0.00 39.92 2.40
337 338 3.284617 TGGACTGCCATGATTGAAGATG 58.715 45.455 0.00 0.00 39.92 2.90
338 339 3.054213 TGGACTGCCATGATTGAAGATGA 60.054 43.478 0.00 0.00 39.92 2.92
339 340 3.949754 GGACTGCCATGATTGAAGATGAA 59.050 43.478 0.00 0.00 0.00 2.57
340 341 4.583489 GGACTGCCATGATTGAAGATGAAT 59.417 41.667 0.00 0.00 0.00 2.57
341 342 5.766670 GGACTGCCATGATTGAAGATGAATA 59.233 40.000 0.00 0.00 0.00 1.75
342 343 6.072618 GGACTGCCATGATTGAAGATGAATAG 60.073 42.308 0.00 0.00 0.00 1.73
343 344 6.598503 ACTGCCATGATTGAAGATGAATAGA 58.401 36.000 0.00 0.00 0.00 1.98
344 345 7.232188 ACTGCCATGATTGAAGATGAATAGAT 58.768 34.615 0.00 0.00 0.00 1.98
345 346 7.724506 ACTGCCATGATTGAAGATGAATAGATT 59.275 33.333 0.00 0.00 0.00 2.40
346 347 7.882179 TGCCATGATTGAAGATGAATAGATTG 58.118 34.615 0.00 0.00 0.00 2.67
347 348 7.039993 TGCCATGATTGAAGATGAATAGATTGG 60.040 37.037 0.00 0.00 0.00 3.16
348 349 7.176165 GCCATGATTGAAGATGAATAGATTGGA 59.824 37.037 0.00 0.00 0.00 3.53
349 350 9.074576 CCATGATTGAAGATGAATAGATTGGAA 57.925 33.333 0.00 0.00 0.00 3.53
351 352 9.863650 ATGATTGAAGATGAATAGATTGGAAGT 57.136 29.630 0.00 0.00 0.00 3.01
352 353 9.690913 TGATTGAAGATGAATAGATTGGAAGTT 57.309 29.630 0.00 0.00 0.00 2.66
435 436 1.729470 CGCATACGCTGTCCCTCTCT 61.729 60.000 0.00 0.00 35.30 3.10
442 443 1.465794 GCTGTCCCTCTCTAGTCGTT 58.534 55.000 0.00 0.00 0.00 3.85
461 462 5.795441 GTCGTTGCACATTCTATTTTCTTCC 59.205 40.000 0.00 0.00 0.00 3.46
499 501 3.253230 CATGATGTGTCTGCGTGAGTTA 58.747 45.455 0.00 0.00 0.00 2.24
639 642 2.537560 CCTTCCGTGCGATGGATGC 61.538 63.158 0.00 0.00 37.91 3.91
641 644 1.153188 TTCCGTGCGATGGATGCAT 60.153 52.632 0.00 0.00 45.34 3.96
660 664 2.530151 TGGGAGGCTGCTCAACCT 60.530 61.111 5.84 0.00 39.65 3.50
661 665 2.045536 GGGAGGCTGCTCAACCTG 60.046 66.667 5.84 0.00 36.05 4.00
732 736 2.429571 GTGCGACCGTCGTGCTTA 60.430 61.111 21.37 2.00 42.81 3.09
1017 1080 1.450312 CATGAACTCGAGGGTGGCC 60.450 63.158 18.41 0.00 0.00 5.36
1091 1199 2.764128 GGATGGGGACTCGGAGCA 60.764 66.667 4.58 0.00 0.00 4.26
1321 1998 1.453148 GCTTGCTCAACGATTGTTTGC 59.547 47.619 11.66 11.66 35.72 3.68
1418 2096 2.440409 AGGATGAGAACATTGTGGTGC 58.560 47.619 0.00 0.00 36.82 5.01
1444 2122 2.754648 CGATGACATCGCCAACAGT 58.245 52.632 23.70 0.00 46.55 3.55
1524 2206 3.359695 TGGTGTTCCCAAGGTATTAGC 57.640 47.619 0.00 0.00 41.50 3.09
1527 2209 3.632145 GGTGTTCCCAAGGTATTAGCATG 59.368 47.826 0.00 0.00 0.00 4.06
1888 2771 1.376543 ATGCTGGCGACTTCATCAAG 58.623 50.000 0.00 0.00 35.50 3.02
1904 2787 2.920524 TCAAGGTGTTACGGCAAAAGA 58.079 42.857 0.00 0.00 0.00 2.52
2032 2960 6.476378 AGAACTACTACAATTGTGGCAGATT 58.524 36.000 24.34 15.71 0.00 2.40
2050 2978 6.017933 GCAGATTATATATGTTGAAGCGTGC 58.982 40.000 0.00 0.00 0.00 5.34
2098 3026 6.381481 TTGATGCCACAAGATCACAATATC 57.619 37.500 0.00 0.00 0.00 1.63
2267 3292 7.147983 GCATCAGCTAGCTGTAATATAGGTACT 60.148 40.741 36.99 5.50 43.96 2.73
2294 3328 9.959721 AGTTTGTATCAGTTATCTACAACCATT 57.040 29.630 0.00 0.00 35.66 3.16
2322 3356 4.334552 TGCTTGCTATTCTGAACCATTCA 58.665 39.130 0.00 0.00 38.17 2.57
2326 3360 6.455360 TTGCTATTCTGAACCATTCAATCC 57.545 37.500 0.00 0.00 39.58 3.01
2327 3361 5.759059 TGCTATTCTGAACCATTCAATCCT 58.241 37.500 0.00 0.00 39.58 3.24
2328 3362 5.591472 TGCTATTCTGAACCATTCAATCCTG 59.409 40.000 0.00 0.00 39.58 3.86
2329 3363 4.996788 ATTCTGAACCATTCAATCCTGC 57.003 40.909 0.00 0.00 39.58 4.85
2330 3364 3.726557 TCTGAACCATTCAATCCTGCT 57.273 42.857 0.00 0.00 39.58 4.24
2331 3365 4.038271 TCTGAACCATTCAATCCTGCTT 57.962 40.909 0.00 0.00 39.58 3.91
2332 3366 4.012374 TCTGAACCATTCAATCCTGCTTC 58.988 43.478 0.00 0.00 39.58 3.86
2333 3367 4.015084 CTGAACCATTCAATCCTGCTTCT 58.985 43.478 0.00 0.00 39.58 2.85
2334 3368 4.410099 TGAACCATTCAATCCTGCTTCTT 58.590 39.130 0.00 0.00 36.59 2.52
2335 3369 4.834496 TGAACCATTCAATCCTGCTTCTTT 59.166 37.500 0.00 0.00 36.59 2.52
2336 3370 5.305128 TGAACCATTCAATCCTGCTTCTTTT 59.695 36.000 0.00 0.00 36.59 2.27
2337 3371 5.813513 ACCATTCAATCCTGCTTCTTTTT 57.186 34.783 0.00 0.00 0.00 1.94
2360 3394 1.339631 TGACAACCACCATTCGATCCC 60.340 52.381 0.00 0.00 0.00 3.85
2380 3414 4.038642 TCCCACTTAATTTGCAGTGAAACC 59.961 41.667 11.73 0.00 42.74 3.27
2563 3600 0.675083 CAAGCATCACAAACAGGCCA 59.325 50.000 5.01 0.00 0.00 5.36
2627 3664 3.492421 CCGACATTCTTTTCATGTGGG 57.508 47.619 0.41 0.41 42.13 4.61
2718 3790 6.536941 TGTTTTTCCAAATTTGTCTGCTAACC 59.463 34.615 16.73 0.00 0.00 2.85
2775 3850 4.953781 AAATGGGGGATCAGAAGAGAAA 57.046 40.909 0.00 0.00 0.00 2.52
2896 3978 0.106708 TCCTTCAGTGCTTGACGCTT 59.893 50.000 0.00 0.00 36.85 4.68
2963 4045 5.184287 TGAAGACGATGGTGAGTGTAACATA 59.816 40.000 0.00 0.00 41.43 2.29
3423 4582 4.202060 TGCTCGTGCCTTTGTAAATCAAAA 60.202 37.500 7.05 0.00 39.98 2.44
3424 4583 4.742659 GCTCGTGCCTTTGTAAATCAAAAA 59.257 37.500 0.00 0.00 44.08 1.94
3426 4585 6.584563 GCTCGTGCCTTTGTAAATCAAAAATA 59.415 34.615 0.00 0.00 44.08 1.40
3755 4932 1.315690 CACTGCTGCTCCCCATATTG 58.684 55.000 0.00 0.00 0.00 1.90
3793 4970 6.284891 TGACCAATGAATGAAAGGAAATCC 57.715 37.500 0.00 0.00 0.00 3.01
3871 5049 8.485976 AGTATAGCATTTCAGACAAAGTCTTC 57.514 34.615 0.00 0.00 41.37 2.87
3873 5051 4.464008 AGCATTTCAGACAAAGTCTTCCA 58.536 39.130 0.00 0.00 41.37 3.53
4147 5328 4.275689 TGAGATGAGAGCGCAAAAAGAAAA 59.724 37.500 11.47 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.608717 ATCTGCCGGAGACACACCTC 61.609 60.000 5.05 0.00 31.75 3.85
6 7 1.608717 GATCTGCCGGAGACACACCT 61.609 60.000 5.05 0.00 31.75 4.00
7 8 1.153549 GATCTGCCGGAGACACACC 60.154 63.158 5.05 0.00 31.75 4.16
8 9 1.103803 TAGATCTGCCGGAGACACAC 58.896 55.000 5.05 0.00 31.75 3.82
9 10 1.957177 GATAGATCTGCCGGAGACACA 59.043 52.381 5.05 0.00 31.75 3.72
10 11 2.235016 AGATAGATCTGCCGGAGACAC 58.765 52.381 5.05 3.97 35.42 3.67
11 12 2.666272 AGATAGATCTGCCGGAGACA 57.334 50.000 5.05 0.00 35.42 3.41
12 13 3.553922 CCAAAGATAGATCTGCCGGAGAC 60.554 52.174 5.05 0.97 37.19 3.36
13 14 2.630098 CCAAAGATAGATCTGCCGGAGA 59.370 50.000 5.05 5.76 37.19 3.71
14 15 2.366916 ACCAAAGATAGATCTGCCGGAG 59.633 50.000 5.05 0.00 37.19 4.63
15 16 2.103094 CACCAAAGATAGATCTGCCGGA 59.897 50.000 5.05 0.00 37.19 5.14
16 17 2.487934 CACCAAAGATAGATCTGCCGG 58.512 52.381 5.18 0.00 37.19 6.13
17 18 2.103094 TCCACCAAAGATAGATCTGCCG 59.897 50.000 5.18 0.00 37.19 5.69
18 19 3.845781 TCCACCAAAGATAGATCTGCC 57.154 47.619 5.18 0.00 37.19 4.85
19 20 5.506982 GCAAATCCACCAAAGATAGATCTGC 60.507 44.000 5.18 0.00 37.19 4.26
20 21 5.826737 AGCAAATCCACCAAAGATAGATCTG 59.173 40.000 5.18 0.00 37.19 2.90
21 22 6.011122 AGCAAATCCACCAAAGATAGATCT 57.989 37.500 0.00 0.00 39.22 2.75
22 23 5.824624 TGAGCAAATCCACCAAAGATAGATC 59.175 40.000 0.00 0.00 0.00 2.75
23 24 5.759059 TGAGCAAATCCACCAAAGATAGAT 58.241 37.500 0.00 0.00 0.00 1.98
24 25 5.045651 TCTGAGCAAATCCACCAAAGATAGA 60.046 40.000 0.00 0.00 0.00 1.98
25 26 5.188434 TCTGAGCAAATCCACCAAAGATAG 58.812 41.667 0.00 0.00 0.00 2.08
26 27 5.178096 TCTGAGCAAATCCACCAAAGATA 57.822 39.130 0.00 0.00 0.00 1.98
27 28 4.038271 TCTGAGCAAATCCACCAAAGAT 57.962 40.909 0.00 0.00 0.00 2.40
28 29 3.507162 TCTGAGCAAATCCACCAAAGA 57.493 42.857 0.00 0.00 0.00 2.52
29 30 4.015084 AGATCTGAGCAAATCCACCAAAG 58.985 43.478 0.00 0.00 0.00 2.77
30 31 4.012374 GAGATCTGAGCAAATCCACCAAA 58.988 43.478 0.00 0.00 0.00 3.28
31 32 3.614092 GAGATCTGAGCAAATCCACCAA 58.386 45.455 0.00 0.00 0.00 3.67
32 33 2.419159 CGAGATCTGAGCAAATCCACCA 60.419 50.000 0.00 0.00 0.00 4.17
33 34 2.208431 CGAGATCTGAGCAAATCCACC 58.792 52.381 0.00 0.00 0.00 4.61
34 35 2.863137 GACGAGATCTGAGCAAATCCAC 59.137 50.000 0.00 0.00 0.00 4.02
35 36 2.480244 CGACGAGATCTGAGCAAATCCA 60.480 50.000 0.00 0.00 0.00 3.41
36 37 2.123342 CGACGAGATCTGAGCAAATCC 58.877 52.381 0.00 0.00 0.00 3.01
37 38 2.803451 ACGACGAGATCTGAGCAAATC 58.197 47.619 0.00 0.00 0.00 2.17
38 39 2.926200 CAACGACGAGATCTGAGCAAAT 59.074 45.455 0.00 0.00 0.00 2.32
39 40 2.288213 ACAACGACGAGATCTGAGCAAA 60.288 45.455 0.00 0.00 0.00 3.68
40 41 1.269723 ACAACGACGAGATCTGAGCAA 59.730 47.619 0.00 0.00 0.00 3.91
41 42 0.881796 ACAACGACGAGATCTGAGCA 59.118 50.000 0.00 0.00 0.00 4.26
42 43 1.914700 GAACAACGACGAGATCTGAGC 59.085 52.381 0.00 0.00 0.00 4.26
43 44 2.169974 CGAACAACGACGAGATCTGAG 58.830 52.381 0.00 0.00 45.77 3.35
44 45 1.534163 ACGAACAACGACGAGATCTGA 59.466 47.619 0.00 0.00 45.77 3.27
45 46 1.905687 GACGAACAACGACGAGATCTG 59.094 52.381 0.00 0.00 45.77 2.90
46 47 1.805345 AGACGAACAACGACGAGATCT 59.195 47.619 0.00 0.00 45.77 2.75
47 48 2.244281 AGACGAACAACGACGAGATC 57.756 50.000 0.00 0.00 45.77 2.75
48 49 3.126514 ACATAGACGAACAACGACGAGAT 59.873 43.478 0.00 0.00 45.77 2.75
49 50 2.481568 ACATAGACGAACAACGACGAGA 59.518 45.455 0.00 0.00 45.77 4.04
50 51 2.847901 ACATAGACGAACAACGACGAG 58.152 47.619 0.00 0.00 45.77 4.18
51 52 2.975410 ACATAGACGAACAACGACGA 57.025 45.000 0.00 0.00 45.77 4.20
52 53 2.024875 CGAACATAGACGAACAACGACG 59.975 50.000 0.00 0.00 45.77 5.12
53 54 2.975851 ACGAACATAGACGAACAACGAC 59.024 45.455 0.00 0.00 45.77 4.34
54 55 2.975193 CACGAACATAGACGAACAACGA 59.025 45.455 0.00 0.00 45.77 3.85
56 57 3.488310 ACACACGAACATAGACGAACAAC 59.512 43.478 0.00 0.00 0.00 3.32
57 58 3.708890 ACACACGAACATAGACGAACAA 58.291 40.909 0.00 0.00 0.00 2.83
58 59 3.004002 AGACACACGAACATAGACGAACA 59.996 43.478 0.00 0.00 0.00 3.18
59 60 3.562505 AGACACACGAACATAGACGAAC 58.437 45.455 0.00 0.00 0.00 3.95
60 61 3.909776 AGACACACGAACATAGACGAA 57.090 42.857 0.00 0.00 0.00 3.85
61 62 3.666111 CGAAGACACACGAACATAGACGA 60.666 47.826 0.00 0.00 0.00 4.20
62 63 2.588539 CGAAGACACACGAACATAGACG 59.411 50.000 0.00 0.00 0.00 4.18
63 64 2.915463 CCGAAGACACACGAACATAGAC 59.085 50.000 0.00 0.00 0.00 2.59
64 65 2.555325 ACCGAAGACACACGAACATAGA 59.445 45.455 0.00 0.00 0.00 1.98
65 66 2.942710 ACCGAAGACACACGAACATAG 58.057 47.619 0.00 0.00 0.00 2.23
66 67 3.374220 AACCGAAGACACACGAACATA 57.626 42.857 0.00 0.00 0.00 2.29
67 68 2.234300 AACCGAAGACACACGAACAT 57.766 45.000 0.00 0.00 0.00 2.71
68 69 1.661617 CAAACCGAAGACACACGAACA 59.338 47.619 0.00 0.00 0.00 3.18
69 70 1.004292 CCAAACCGAAGACACACGAAC 60.004 52.381 0.00 0.00 0.00 3.95
70 71 1.134759 TCCAAACCGAAGACACACGAA 60.135 47.619 0.00 0.00 0.00 3.85
71 72 0.460722 TCCAAACCGAAGACACACGA 59.539 50.000 0.00 0.00 0.00 4.35
72 73 1.459592 GATCCAAACCGAAGACACACG 59.540 52.381 0.00 0.00 0.00 4.49
73 74 1.804748 GGATCCAAACCGAAGACACAC 59.195 52.381 6.95 0.00 0.00 3.82
74 75 1.697432 AGGATCCAAACCGAAGACACA 59.303 47.619 15.82 0.00 0.00 3.72
75 76 2.474410 AGGATCCAAACCGAAGACAC 57.526 50.000 15.82 0.00 0.00 3.67
76 77 2.290071 GGAAGGATCCAAACCGAAGACA 60.290 50.000 15.82 0.00 45.79 3.41
77 78 2.357075 GGAAGGATCCAAACCGAAGAC 58.643 52.381 15.82 0.00 45.79 3.01
78 79 1.066430 CGGAAGGATCCAAACCGAAGA 60.066 52.381 28.08 0.00 46.97 2.87
79 80 1.369625 CGGAAGGATCCAAACCGAAG 58.630 55.000 28.08 8.79 46.97 3.79
80 81 3.543884 CGGAAGGATCCAAACCGAA 57.456 52.632 28.08 0.00 46.97 4.30
81 82 2.673685 TCGGAAGGATCCAAACCGA 58.326 52.632 29.50 29.50 46.97 4.69
82 83 1.583054 GATCGGAAGGATCCAAACCG 58.417 55.000 26.93 26.93 46.97 4.44
90 91 7.270047 TGAAAAATAACGTAGATCGGAAGGAT 58.730 34.615 0.00 0.00 44.69 3.24
91 92 6.632909 TGAAAAATAACGTAGATCGGAAGGA 58.367 36.000 0.00 0.00 44.69 3.36
92 93 6.897259 TGAAAAATAACGTAGATCGGAAGG 57.103 37.500 0.00 0.00 44.69 3.46
93 94 7.274367 CGATGAAAAATAACGTAGATCGGAAG 58.726 38.462 0.00 0.00 44.69 3.46
94 95 7.157050 CGATGAAAAATAACGTAGATCGGAA 57.843 36.000 0.00 0.00 44.69 4.30
95 96 6.742999 CGATGAAAAATAACGTAGATCGGA 57.257 37.500 0.00 0.00 44.69 4.55
96 97 5.901509 CCGATGAAAAATAACGTAGATCGG 58.098 41.667 0.00 0.00 43.53 4.18
97 98 5.363517 GCCGATGAAAAATAACGTAGATCG 58.636 41.667 0.00 0.00 46.00 3.69
98 99 5.363517 CGCCGATGAAAAATAACGTAGATC 58.636 41.667 0.00 0.00 0.00 2.75
99 100 4.210537 CCGCCGATGAAAAATAACGTAGAT 59.789 41.667 0.00 0.00 0.00 1.98
100 101 3.552699 CCGCCGATGAAAAATAACGTAGA 59.447 43.478 0.00 0.00 0.00 2.59
101 102 3.843510 GCCGCCGATGAAAAATAACGTAG 60.844 47.826 0.00 0.00 0.00 3.51
102 103 2.030701 GCCGCCGATGAAAAATAACGTA 59.969 45.455 0.00 0.00 0.00 3.57
103 104 1.202098 GCCGCCGATGAAAAATAACGT 60.202 47.619 0.00 0.00 0.00 3.99
104 105 1.462791 GCCGCCGATGAAAAATAACG 58.537 50.000 0.00 0.00 0.00 3.18
105 106 1.462791 CGCCGCCGATGAAAAATAAC 58.537 50.000 0.00 0.00 36.29 1.89
106 107 0.378962 CCGCCGCCGATGAAAAATAA 59.621 50.000 0.00 0.00 36.29 1.40
107 108 0.745128 ACCGCCGCCGATGAAAAATA 60.745 50.000 0.00 0.00 36.29 1.40
108 109 1.591504 AACCGCCGCCGATGAAAAAT 61.592 50.000 0.00 0.00 36.29 1.82
109 110 2.262303 AACCGCCGCCGATGAAAAA 61.262 52.632 0.00 0.00 36.29 1.94
110 111 2.670251 AACCGCCGCCGATGAAAA 60.670 55.556 0.00 0.00 36.29 2.29
111 112 3.427425 CAACCGCCGCCGATGAAA 61.427 61.111 0.00 0.00 36.29 2.69
119 120 4.389576 CAGAACAGCAACCGCCGC 62.390 66.667 0.00 0.00 39.83 6.53
120 121 3.726517 CCAGAACAGCAACCGCCG 61.727 66.667 0.00 0.00 39.83 6.46
121 122 3.365265 CCCAGAACAGCAACCGCC 61.365 66.667 0.00 0.00 39.83 6.13
122 123 3.365265 CCCCAGAACAGCAACCGC 61.365 66.667 0.00 0.00 38.99 5.68
123 124 2.113139 ACCCCAGAACAGCAACCG 59.887 61.111 0.00 0.00 0.00 4.44
124 125 2.564721 GCACCCCAGAACAGCAACC 61.565 63.158 0.00 0.00 0.00 3.77
125 126 1.529244 AGCACCCCAGAACAGCAAC 60.529 57.895 0.00 0.00 0.00 4.17
126 127 1.529010 CAGCACCCCAGAACAGCAA 60.529 57.895 0.00 0.00 0.00 3.91
127 128 2.113774 CAGCACCCCAGAACAGCA 59.886 61.111 0.00 0.00 0.00 4.41
128 129 2.674380 CCAGCACCCCAGAACAGC 60.674 66.667 0.00 0.00 0.00 4.40
129 130 1.302832 GACCAGCACCCCAGAACAG 60.303 63.158 0.00 0.00 0.00 3.16
130 131 2.829384 GGACCAGCACCCCAGAACA 61.829 63.158 0.00 0.00 0.00 3.18
131 132 1.198759 TAGGACCAGCACCCCAGAAC 61.199 60.000 0.00 0.00 0.00 3.01
132 133 0.253160 ATAGGACCAGCACCCCAGAA 60.253 55.000 0.00 0.00 0.00 3.02
133 134 0.982852 CATAGGACCAGCACCCCAGA 60.983 60.000 0.00 0.00 0.00 3.86
134 135 0.982852 TCATAGGACCAGCACCCCAG 60.983 60.000 0.00 0.00 0.00 4.45
135 136 0.982852 CTCATAGGACCAGCACCCCA 60.983 60.000 0.00 0.00 0.00 4.96
136 137 1.700042 CCTCATAGGACCAGCACCCC 61.700 65.000 0.00 0.00 37.67 4.95
137 138 1.832912 CCTCATAGGACCAGCACCC 59.167 63.158 0.00 0.00 37.67 4.61
138 139 1.147153 GCCTCATAGGACCAGCACC 59.853 63.158 0.00 0.00 37.67 5.01
139 140 1.147153 GGCCTCATAGGACCAGCAC 59.853 63.158 0.00 0.00 37.46 4.40
140 141 3.647367 GGCCTCATAGGACCAGCA 58.353 61.111 0.00 0.00 37.46 4.41
145 146 1.269831 CGTGCTAAGGCCTCATAGGAC 60.270 57.143 20.66 20.66 46.64 3.85
146 147 1.040646 CGTGCTAAGGCCTCATAGGA 58.959 55.000 5.23 3.07 37.67 2.94
147 148 1.040646 TCGTGCTAAGGCCTCATAGG 58.959 55.000 5.23 0.00 38.80 2.57
148 149 1.600663 CGTCGTGCTAAGGCCTCATAG 60.601 57.143 5.23 6.39 37.74 2.23
149 150 0.384309 CGTCGTGCTAAGGCCTCATA 59.616 55.000 5.23 0.00 37.74 2.15
150 151 1.141881 CGTCGTGCTAAGGCCTCAT 59.858 57.895 5.23 0.00 37.74 2.90
151 152 1.974875 TCGTCGTGCTAAGGCCTCA 60.975 57.895 5.23 0.00 37.74 3.86
152 153 1.516603 GTCGTCGTGCTAAGGCCTC 60.517 63.158 5.23 0.00 37.74 4.70
153 154 1.533469 AAGTCGTCGTGCTAAGGCCT 61.533 55.000 0.00 0.00 37.74 5.19
154 155 1.077089 GAAGTCGTCGTGCTAAGGCC 61.077 60.000 0.00 0.00 37.74 5.19
155 156 1.077089 GGAAGTCGTCGTGCTAAGGC 61.077 60.000 0.00 0.00 39.26 4.35
156 157 0.458025 GGGAAGTCGTCGTGCTAAGG 60.458 60.000 0.00 0.00 0.00 2.69
157 158 0.797249 CGGGAAGTCGTCGTGCTAAG 60.797 60.000 0.00 0.00 0.00 2.18
158 159 1.210931 CGGGAAGTCGTCGTGCTAA 59.789 57.895 0.00 0.00 0.00 3.09
159 160 1.672030 TCGGGAAGTCGTCGTGCTA 60.672 57.895 0.00 0.00 0.00 3.49
160 161 2.981909 TCGGGAAGTCGTCGTGCT 60.982 61.111 0.00 0.00 0.00 4.40
161 162 2.804090 GTCGGGAAGTCGTCGTGC 60.804 66.667 0.00 0.00 0.00 5.34
162 163 1.442184 CAGTCGGGAAGTCGTCGTG 60.442 63.158 0.00 0.00 0.00 4.35
163 164 1.849976 GACAGTCGGGAAGTCGTCGT 61.850 60.000 0.00 0.00 0.00 4.34
164 165 1.154263 GACAGTCGGGAAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
165 166 1.130186 GTAGACAGTCGGGAAGTCGTC 59.870 57.143 0.00 0.00 37.36 4.20
166 167 1.163554 GTAGACAGTCGGGAAGTCGT 58.836 55.000 0.00 0.00 37.36 4.34
167 168 1.451067 AGTAGACAGTCGGGAAGTCG 58.549 55.000 0.00 0.00 37.36 4.18
168 169 3.341823 TGTAGTAGACAGTCGGGAAGTC 58.658 50.000 0.00 0.00 32.86 3.01
169 170 3.430042 TGTAGTAGACAGTCGGGAAGT 57.570 47.619 0.00 0.00 32.86 3.01
170 171 3.504906 TGTTGTAGTAGACAGTCGGGAAG 59.495 47.826 0.00 0.00 39.88 3.46
171 172 3.489355 TGTTGTAGTAGACAGTCGGGAA 58.511 45.455 0.00 0.00 39.88 3.97
172 173 3.144657 TGTTGTAGTAGACAGTCGGGA 57.855 47.619 0.00 0.00 39.88 5.14
173 174 3.255149 ACTTGTTGTAGTAGACAGTCGGG 59.745 47.826 0.00 0.00 39.88 5.14
174 175 4.500603 ACTTGTTGTAGTAGACAGTCGG 57.499 45.455 0.00 0.00 39.88 4.79
175 176 5.173312 CACAACTTGTTGTAGTAGACAGTCG 59.827 44.000 17.26 0.00 39.88 4.18
176 177 5.050972 GCACAACTTGTTGTAGTAGACAGTC 60.051 44.000 17.26 0.00 39.88 3.51
177 178 4.809426 GCACAACTTGTTGTAGTAGACAGT 59.191 41.667 17.26 0.00 39.88 3.55
178 179 4.211374 GGCACAACTTGTTGTAGTAGACAG 59.789 45.833 17.26 5.63 39.88 3.51
179 180 4.124238 GGCACAACTTGTTGTAGTAGACA 58.876 43.478 17.26 0.00 35.78 3.41
180 181 3.183775 CGGCACAACTTGTTGTAGTAGAC 59.816 47.826 17.26 7.88 33.17 2.59
181 182 3.386486 CGGCACAACTTGTTGTAGTAGA 58.614 45.455 17.26 0.00 33.17 2.59
182 183 2.478894 CCGGCACAACTTGTTGTAGTAG 59.521 50.000 17.26 7.80 33.17 2.57
183 184 2.485903 CCGGCACAACTTGTTGTAGTA 58.514 47.619 17.26 0.00 33.17 1.82
184 185 1.305201 CCGGCACAACTTGTTGTAGT 58.695 50.000 17.26 0.00 33.17 2.73
185 186 0.040425 GCCGGCACAACTTGTTGTAG 60.040 55.000 24.80 12.96 33.17 2.74
186 187 0.464735 AGCCGGCACAACTTGTTGTA 60.465 50.000 31.54 0.00 33.17 2.41
187 188 1.724582 GAGCCGGCACAACTTGTTGT 61.725 55.000 31.54 12.73 35.14 3.32
188 189 1.008538 GAGCCGGCACAACTTGTTG 60.009 57.895 31.54 11.44 0.00 3.33
189 190 2.193536 GGAGCCGGCACAACTTGTT 61.194 57.895 31.54 3.33 0.00 2.83
190 191 2.594592 GGAGCCGGCACAACTTGT 60.595 61.111 31.54 4.27 0.00 3.16
191 192 3.726517 CGGAGCCGGCACAACTTG 61.727 66.667 31.54 6.83 35.56 3.16
208 209 4.996434 CATCGCCCCTCCATCGCC 62.996 72.222 0.00 0.00 0.00 5.54
209 210 3.928779 TCATCGCCCCTCCATCGC 61.929 66.667 0.00 0.00 0.00 4.58
210 211 2.029666 GTCATCGCCCCTCCATCG 59.970 66.667 0.00 0.00 0.00 3.84
211 212 2.029666 CGTCATCGCCCCTCCATC 59.970 66.667 0.00 0.00 0.00 3.51
212 213 3.550431 CCGTCATCGCCCCTCCAT 61.550 66.667 0.00 0.00 35.54 3.41
235 236 3.241059 CGAAGCGAGTCGAAGGCG 61.241 66.667 18.61 9.77 43.86 5.52
236 237 2.881352 CCGAAGCGAGTCGAAGGC 60.881 66.667 18.61 0.00 43.86 4.35
237 238 1.801913 CACCGAAGCGAGTCGAAGG 60.802 63.158 18.61 14.71 43.86 3.46
238 239 2.437343 GCACCGAAGCGAGTCGAAG 61.437 63.158 18.61 3.37 43.86 3.79
239 240 2.416244 AAGCACCGAAGCGAGTCGAA 62.416 55.000 18.61 0.00 43.86 3.71
240 241 2.916052 AAGCACCGAAGCGAGTCGA 61.916 57.895 18.61 0.00 43.86 4.20
241 242 2.430921 AAGCACCGAAGCGAGTCG 60.431 61.111 8.54 8.54 40.15 4.18
242 243 0.388134 TACAAGCACCGAAGCGAGTC 60.388 55.000 0.00 0.00 40.15 3.36
243 244 0.388649 CTACAAGCACCGAAGCGAGT 60.389 55.000 0.00 0.00 40.15 4.18
244 245 0.388649 ACTACAAGCACCGAAGCGAG 60.389 55.000 0.00 0.00 40.15 5.03
245 246 0.388134 GACTACAAGCACCGAAGCGA 60.388 55.000 0.00 0.00 40.15 4.93
246 247 1.674611 CGACTACAAGCACCGAAGCG 61.675 60.000 0.00 0.00 40.15 4.68
247 248 0.666577 ACGACTACAAGCACCGAAGC 60.667 55.000 0.00 0.00 0.00 3.86
248 249 1.337821 GACGACTACAAGCACCGAAG 58.662 55.000 0.00 0.00 0.00 3.79
249 250 0.386352 CGACGACTACAAGCACCGAA 60.386 55.000 0.00 0.00 0.00 4.30
250 251 1.208358 CGACGACTACAAGCACCGA 59.792 57.895 0.00 0.00 0.00 4.69
251 252 2.434134 GCGACGACTACAAGCACCG 61.434 63.158 0.00 0.00 0.00 4.94
252 253 0.169672 TAGCGACGACTACAAGCACC 59.830 55.000 0.00 0.00 0.00 5.01
253 254 1.536149 CTAGCGACGACTACAAGCAC 58.464 55.000 0.00 0.00 0.00 4.40
254 255 0.450583 CCTAGCGACGACTACAAGCA 59.549 55.000 0.00 0.00 0.00 3.91
255 256 0.450983 ACCTAGCGACGACTACAAGC 59.549 55.000 0.00 0.00 0.00 4.01
256 257 1.202154 CCACCTAGCGACGACTACAAG 60.202 57.143 0.00 0.00 0.00 3.16
257 258 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
258 259 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
259 260 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
260 261 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
261 262 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
262 263 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
263 264 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
264 265 1.086067 TCGTAGACCACCTAGCGACG 61.086 60.000 0.00 0.00 31.20 5.12
265 266 1.089920 TTCGTAGACCACCTAGCGAC 58.910 55.000 0.00 0.00 34.32 5.19
266 267 1.945394 GATTCGTAGACCACCTAGCGA 59.055 52.381 0.00 0.00 34.32 4.93
267 268 1.948145 AGATTCGTAGACCACCTAGCG 59.052 52.381 0.00 0.00 34.32 4.26
268 269 2.034812 CCAGATTCGTAGACCACCTAGC 59.965 54.545 0.00 0.00 34.32 3.42
269 270 3.552875 TCCAGATTCGTAGACCACCTAG 58.447 50.000 0.00 0.00 34.32 3.02
270 271 3.657398 TCCAGATTCGTAGACCACCTA 57.343 47.619 0.00 0.00 34.32 3.08
271 272 2.526888 TCCAGATTCGTAGACCACCT 57.473 50.000 0.00 0.00 34.32 4.00
272 273 2.431057 ACATCCAGATTCGTAGACCACC 59.569 50.000 0.00 0.00 34.32 4.61
273 274 3.802948 ACATCCAGATTCGTAGACCAC 57.197 47.619 0.00 0.00 34.32 4.16
274 275 6.479972 AATTACATCCAGATTCGTAGACCA 57.520 37.500 0.00 0.00 34.32 4.02
275 276 7.787725 AAAATTACATCCAGATTCGTAGACC 57.212 36.000 0.00 0.00 34.32 3.85
294 295 9.634163 GTCCAACGAATACCAGAAATAAAAATT 57.366 29.630 0.00 0.00 0.00 1.82
295 296 9.020731 AGTCCAACGAATACCAGAAATAAAAAT 57.979 29.630 0.00 0.00 0.00 1.82
296 297 8.293867 CAGTCCAACGAATACCAGAAATAAAAA 58.706 33.333 0.00 0.00 0.00 1.94
297 298 7.574217 GCAGTCCAACGAATACCAGAAATAAAA 60.574 37.037 0.00 0.00 0.00 1.52
298 299 6.128117 GCAGTCCAACGAATACCAGAAATAAA 60.128 38.462 0.00 0.00 0.00 1.40
299 300 5.353123 GCAGTCCAACGAATACCAGAAATAA 59.647 40.000 0.00 0.00 0.00 1.40
300 301 4.873827 GCAGTCCAACGAATACCAGAAATA 59.126 41.667 0.00 0.00 0.00 1.40
301 302 3.689649 GCAGTCCAACGAATACCAGAAAT 59.310 43.478 0.00 0.00 0.00 2.17
302 303 3.071479 GCAGTCCAACGAATACCAGAAA 58.929 45.455 0.00 0.00 0.00 2.52
303 304 2.614481 GGCAGTCCAACGAATACCAGAA 60.614 50.000 0.00 0.00 0.00 3.02
304 305 1.066430 GGCAGTCCAACGAATACCAGA 60.066 52.381 0.00 0.00 0.00 3.86
305 306 1.338674 TGGCAGTCCAACGAATACCAG 60.339 52.381 0.00 0.00 39.99 4.00
306 307 0.687920 TGGCAGTCCAACGAATACCA 59.312 50.000 0.00 0.00 39.99 3.25
307 308 3.543884 TGGCAGTCCAACGAATACC 57.456 52.632 0.00 0.00 39.99 2.73
317 318 3.548770 TCATCTTCAATCATGGCAGTCC 58.451 45.455 0.00 0.00 0.00 3.85
318 319 5.769484 ATTCATCTTCAATCATGGCAGTC 57.231 39.130 0.00 0.00 0.00 3.51
319 320 6.598503 TCTATTCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
320 321 7.689446 ATCTATTCATCTTCAATCATGGCAG 57.311 36.000 0.00 0.00 0.00 4.85
321 322 7.039993 CCAATCTATTCATCTTCAATCATGGCA 60.040 37.037 0.00 0.00 0.00 4.92
322 323 7.176165 TCCAATCTATTCATCTTCAATCATGGC 59.824 37.037 0.00 0.00 0.00 4.40
323 324 8.631480 TCCAATCTATTCATCTTCAATCATGG 57.369 34.615 0.00 0.00 0.00 3.66
325 326 9.863650 ACTTCCAATCTATTCATCTTCAATCAT 57.136 29.630 0.00 0.00 0.00 2.45
326 327 9.690913 AACTTCCAATCTATTCATCTTCAATCA 57.309 29.630 0.00 0.00 0.00 2.57
362 363 5.013599 ACTCAGCTTAGTCCAGATCCTTTTT 59.986 40.000 0.00 0.00 0.00 1.94
363 364 4.534103 ACTCAGCTTAGTCCAGATCCTTTT 59.466 41.667 0.00 0.00 0.00 2.27
364 365 4.100373 ACTCAGCTTAGTCCAGATCCTTT 58.900 43.478 0.00 0.00 0.00 3.11
435 436 7.148474 GGAAGAAAATAGAATGTGCAACGACTA 60.148 37.037 0.00 0.00 42.39 2.59
442 443 6.662865 TTTGGGAAGAAAATAGAATGTGCA 57.337 33.333 0.00 0.00 0.00 4.57
481 483 4.627467 AGAAATAACTCACGCAGACACATC 59.373 41.667 0.00 0.00 0.00 3.06
485 487 3.994392 GGAAGAAATAACTCACGCAGACA 59.006 43.478 0.00 0.00 0.00 3.41
487 489 3.596214 GGGAAGAAATAACTCACGCAGA 58.404 45.455 0.00 0.00 0.00 4.26
488 490 2.348666 CGGGAAGAAATAACTCACGCAG 59.651 50.000 0.00 0.00 0.00 5.18
606 609 2.558974 GGAAGGGGAAAGGAGAGGTAA 58.441 52.381 0.00 0.00 0.00 2.85
639 642 0.747283 GTTGAGCAGCCTCCCAGATG 60.747 60.000 0.00 0.00 37.29 2.90
641 644 2.596851 GGTTGAGCAGCCTCCCAGA 61.597 63.158 0.00 0.00 37.29 3.86
670 674 1.517276 GTCATGAATTAGCCGACGACG 59.483 52.381 0.00 0.00 39.43 5.12
732 736 2.746277 GTGATTTCGGCCGTGGCT 60.746 61.111 27.15 8.59 41.60 4.75
1160 1269 1.257743 CTTCGTCACCTCTTCCTCCA 58.742 55.000 0.00 0.00 0.00 3.86
1245 1354 1.550524 ACGAGCTGCATTAGTGAGGAA 59.449 47.619 1.02 0.00 0.00 3.36
1246 1355 1.186200 ACGAGCTGCATTAGTGAGGA 58.814 50.000 1.02 0.00 0.00 3.71
1247 1356 2.871182 TACGAGCTGCATTAGTGAGG 57.129 50.000 1.02 0.00 0.00 3.86
1248 1357 5.703876 TGATATACGAGCTGCATTAGTGAG 58.296 41.667 1.02 0.00 0.00 3.51
1249 1358 5.705609 TGATATACGAGCTGCATTAGTGA 57.294 39.130 1.02 0.00 0.00 3.41
1321 1998 1.082169 CCGTGCATCAACAACACCG 60.082 57.895 0.00 0.00 0.00 4.94
1444 2122 0.821711 CACGCCTTGGGTTTTCAGGA 60.822 55.000 0.00 0.00 0.00 3.86
1524 2206 2.479566 ACACAGCCAGTAAGGTCATG 57.520 50.000 0.00 0.00 40.61 3.07
1527 2209 3.187700 CGATAACACAGCCAGTAAGGTC 58.812 50.000 0.00 0.00 40.61 3.85
1825 2708 7.255346 GGCATACCTACATAAAACCATGGTAAC 60.255 40.741 20.12 0.00 33.17 2.50
1829 2712 4.522789 GGGCATACCTACATAAAACCATGG 59.477 45.833 11.19 11.19 35.85 3.66
1832 2715 4.864483 TGGGCATACCTACATAAAACCA 57.136 40.909 0.00 0.00 41.11 3.67
1834 2717 4.637091 ACGTTGGGCATACCTACATAAAAC 59.363 41.667 0.00 0.00 44.04 2.43
1888 2771 2.030274 AGCATTCTTTTGCCGTAACACC 60.030 45.455 0.00 0.00 43.83 4.16
2023 2951 6.147821 ACGCTTCAACATATATAATCTGCCAC 59.852 38.462 0.00 0.00 0.00 5.01
2032 2960 5.751509 ACTTTCGCACGCTTCAACATATATA 59.248 36.000 0.00 0.00 0.00 0.86
2050 2978 1.536766 TCAAAGATGCTGCCACTTTCG 59.463 47.619 14.81 11.72 32.59 3.46
2294 3328 4.336433 GGTTCAGAATAGCAAGCAAGCATA 59.664 41.667 3.19 0.00 36.85 3.14
2336 3370 4.261825 GGATCGAATGGTGGTTGTCAAAAA 60.262 41.667 0.00 0.00 0.00 1.94
2337 3371 3.254657 GGATCGAATGGTGGTTGTCAAAA 59.745 43.478 0.00 0.00 0.00 2.44
2338 3372 2.817258 GGATCGAATGGTGGTTGTCAAA 59.183 45.455 0.00 0.00 0.00 2.69
2339 3373 2.432444 GGATCGAATGGTGGTTGTCAA 58.568 47.619 0.00 0.00 0.00 3.18
2340 3374 1.339631 GGGATCGAATGGTGGTTGTCA 60.340 52.381 0.00 0.00 0.00 3.58
2341 3375 1.339631 TGGGATCGAATGGTGGTTGTC 60.340 52.381 0.00 0.00 0.00 3.18
2342 3376 0.695924 TGGGATCGAATGGTGGTTGT 59.304 50.000 0.00 0.00 0.00 3.32
2343 3377 1.094785 GTGGGATCGAATGGTGGTTG 58.905 55.000 0.00 0.00 0.00 3.77
2344 3378 0.991920 AGTGGGATCGAATGGTGGTT 59.008 50.000 0.00 0.00 0.00 3.67
2345 3379 0.991920 AAGTGGGATCGAATGGTGGT 59.008 50.000 0.00 0.00 0.00 4.16
2346 3380 3.275617 TTAAGTGGGATCGAATGGTGG 57.724 47.619 0.00 0.00 0.00 4.61
2347 3381 5.581605 CAAATTAAGTGGGATCGAATGGTG 58.418 41.667 0.00 0.00 0.00 4.17
2348 3382 4.097892 GCAAATTAAGTGGGATCGAATGGT 59.902 41.667 0.00 0.00 0.00 3.55
2349 3383 4.097741 TGCAAATTAAGTGGGATCGAATGG 59.902 41.667 0.00 0.00 0.00 3.16
2350 3384 5.163622 ACTGCAAATTAAGTGGGATCGAATG 60.164 40.000 0.00 0.00 0.00 2.67
2351 3385 4.949856 ACTGCAAATTAAGTGGGATCGAAT 59.050 37.500 0.00 0.00 0.00 3.34
2352 3386 4.155826 CACTGCAAATTAAGTGGGATCGAA 59.844 41.667 0.00 0.00 40.12 3.71
2353 3387 3.689161 CACTGCAAATTAAGTGGGATCGA 59.311 43.478 7.60 0.00 40.12 3.59
2354 3388 3.689161 TCACTGCAAATTAAGTGGGATCG 59.311 43.478 13.10 0.00 43.28 3.69
2360 3394 4.744631 GTGGGTTTCACTGCAAATTAAGTG 59.255 41.667 8.76 8.76 44.23 3.16
2380 3414 5.772825 TTGTTTCCTTCTTCAGATTGTGG 57.227 39.130 0.00 0.00 0.00 4.17
2627 3664 8.100508 AGCTGAAATAACAACTTTACCTTCTC 57.899 34.615 0.00 0.00 0.00 2.87
2662 3706 4.051237 GCCACAAAAATTGACAAGAGGAC 58.949 43.478 0.00 0.00 0.00 3.85
2663 3707 3.069443 GGCCACAAAAATTGACAAGAGGA 59.931 43.478 0.00 0.00 0.00 3.71
2664 3708 3.392882 GGCCACAAAAATTGACAAGAGG 58.607 45.455 0.00 0.00 0.00 3.69
2665 3709 3.392882 GGGCCACAAAAATTGACAAGAG 58.607 45.455 4.39 0.00 0.00 2.85
2718 3790 8.136057 ACTGAAAGCGAGAAGATACATTATTG 57.864 34.615 0.00 0.00 37.60 1.90
2787 3869 3.003480 CACGGTTTCTTTGATCTCCCTC 58.997 50.000 0.00 0.00 0.00 4.30
2922 4004 5.188434 GTCTTCAGACAATCCCAATCATCA 58.812 41.667 1.86 0.00 44.18 3.07
3078 4178 1.189752 ACTGAGTGAGTGATCCGCAT 58.810 50.000 0.00 0.00 31.75 4.73
3346 4500 1.460273 GGGGCGTCATTGTTGGTGTT 61.460 55.000 0.00 0.00 0.00 3.32
3348 4502 1.250154 ATGGGGCGTCATTGTTGGTG 61.250 55.000 0.00 0.00 0.00 4.17
3423 4582 6.465948 TGCCTTTCAATTGATTGCAGTTATT 58.534 32.000 17.88 0.00 37.68 1.40
3424 4583 6.040209 TGCCTTTCAATTGATTGCAGTTAT 57.960 33.333 17.88 0.00 37.68 1.89
3426 4585 4.339872 TGCCTTTCAATTGATTGCAGTT 57.660 36.364 17.88 0.00 37.68 3.16
3507 4670 3.254166 GCACTGTCAACCATTCTCACAAT 59.746 43.478 0.00 0.00 0.00 2.71
3755 4932 5.705441 TCATTGGTCATGTACTGGAAACTTC 59.295 40.000 0.00 0.00 34.06 3.01
3802 4979 2.930950 TGGAAGTTCAACTCCAACCAG 58.069 47.619 5.01 0.00 0.00 4.00
3871 5049 9.003658 ACTATTCTTGGATCGCTATAAATTTGG 57.996 33.333 0.00 0.00 0.00 3.28
4066 5245 5.575019 CAAGTAAAATATACACCGTTGGGC 58.425 41.667 0.00 0.00 36.48 5.36
4130 5309 7.168135 CCCATATAATTTTCTTTTTGCGCTCTC 59.832 37.037 9.73 0.00 0.00 3.20
4131 5310 6.980397 CCCATATAATTTTCTTTTTGCGCTCT 59.020 34.615 9.73 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.