Multiple sequence alignment - TraesCS2B01G402600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G402600 chr2B 100.000 3470 0 0 1 3470 571251421 571254890 0.000000e+00 6408.0
1 TraesCS2B01G402600 chr2B 91.228 741 65 0 2730 3470 380252130 380252870 0.000000e+00 1009.0
2 TraesCS2B01G402600 chr2B 79.947 374 57 12 1001 1359 548663080 548662710 3.440000e-65 259.0
3 TraesCS2B01G402600 chr2B 91.304 46 1 2 628 673 706299403 706299361 3.740000e-05 60.2
4 TraesCS2B01G402600 chr2A 90.896 1406 76 24 710 2095 631795242 631796615 0.000000e+00 1840.0
5 TraesCS2B01G402600 chr2A 93.704 270 16 1 2090 2359 167840110 167839842 1.500000e-108 403.0
6 TraesCS2B01G402600 chr2A 79.787 376 57 10 999 1359 611317299 611316928 4.440000e-64 255.0
7 TraesCS2B01G402600 chr2A 77.534 365 66 12 1199 1556 611746712 611746357 4.540000e-49 206.0
8 TraesCS2B01G402600 chr2A 88.824 170 14 4 2350 2515 631796612 631796780 1.630000e-48 204.0
9 TraesCS2B01G402600 chr2A 79.000 100 17 4 477 574 141311615 141311518 8.040000e-07 65.8
10 TraesCS2B01G402600 chr3B 88.971 943 96 3 2535 3470 381025225 381026166 0.000000e+00 1158.0
11 TraesCS2B01G402600 chr3B 88.948 932 92 9 2544 3470 250268014 250267089 0.000000e+00 1140.0
12 TraesCS2B01G402600 chr3B 100.000 30 0 0 2563 2592 206426033 206426004 4.840000e-04 56.5
13 TraesCS2B01G402600 chr5B 90.268 596 35 5 1 574 556397243 556397837 0.000000e+00 758.0
14 TraesCS2B01G402600 chr7B 88.273 469 24 6 1 442 624635509 624635045 1.830000e-147 532.0
15 TraesCS2B01G402600 chr7B 95.472 265 10 2 2091 2353 731152118 731151854 4.140000e-114 422.0
16 TraesCS2B01G402600 chr7B 91.339 127 11 0 450 576 624635065 624634939 1.280000e-39 174.0
17 TraesCS2B01G402600 chr7D 83.277 592 72 13 2883 3470 163127229 163126661 1.430000e-143 520.0
18 TraesCS2B01G402600 chr7A 95.019 261 13 0 2092 2352 252742736 252742476 8.960000e-111 411.0
19 TraesCS2B01G402600 chr7A 93.333 270 16 2 2090 2359 170243610 170243343 6.980000e-107 398.0
20 TraesCS2B01G402600 chr6A 94.340 265 14 1 2090 2353 76520941 76520677 4.170000e-109 405.0
21 TraesCS2B01G402600 chr6A 94.275 262 15 0 2092 2353 596368536 596368797 5.390000e-108 401.0
22 TraesCS2B01G402600 chr6A 97.297 37 1 0 2561 2597 377362740 377362704 2.890000e-06 63.9
23 TraesCS2B01G402600 chr6D 94.297 263 15 0 2091 2353 388990620 388990882 1.500000e-108 403.0
24 TraesCS2B01G402600 chr3A 93.657 268 17 0 2093 2360 363589490 363589223 5.390000e-108 401.0
25 TraesCS2B01G402600 chr1A 93.633 267 15 2 2093 2357 377423627 377423893 6.980000e-107 398.0
26 TraesCS2B01G402600 chr3D 90.135 223 16 2 1 219 1968435 1968215 5.670000e-73 285.0
27 TraesCS2B01G402600 chr2D 80.270 370 55 13 1001 1359 470044501 470044139 2.660000e-66 263.0
28 TraesCS2B01G402600 chr2D 79.357 373 56 13 1001 1363 470140014 470139653 3.460000e-60 243.0
29 TraesCS2B01G402600 chr2D 89.024 164 15 1 1199 1359 470058137 470057974 2.110000e-47 200.0
30 TraesCS2B01G402600 chr2D 84.685 111 16 1 1 110 642821249 642821359 3.660000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G402600 chr2B 571251421 571254890 3469 False 6408 6408 100.000 1 3470 1 chr2B.!!$F2 3469
1 TraesCS2B01G402600 chr2B 380252130 380252870 740 False 1009 1009 91.228 2730 3470 1 chr2B.!!$F1 740
2 TraesCS2B01G402600 chr2A 631795242 631796780 1538 False 1022 1840 89.860 710 2515 2 chr2A.!!$F1 1805
3 TraesCS2B01G402600 chr3B 381025225 381026166 941 False 1158 1158 88.971 2535 3470 1 chr3B.!!$F1 935
4 TraesCS2B01G402600 chr3B 250267089 250268014 925 True 1140 1140 88.948 2544 3470 1 chr3B.!!$R2 926
5 TraesCS2B01G402600 chr5B 556397243 556397837 594 False 758 758 90.268 1 574 1 chr5B.!!$F1 573
6 TraesCS2B01G402600 chr7B 624634939 624635509 570 True 353 532 89.806 1 576 2 chr7B.!!$R2 575
7 TraesCS2B01G402600 chr7D 163126661 163127229 568 True 520 520 83.277 2883 3470 1 chr7D.!!$R1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
942 974 0.108804 GACGCCGGAGAATGAACTCA 60.109 55.0 13.83 0.0 38.51 3.41 F
1469 1507 0.107165 AATTCCAGGACTAAGGGCGC 60.107 55.0 0.00 0.0 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2348 2396 0.038159 GTCTCTGGCAAGCACGTACT 60.038 55.0 0.00 0.0 0.0 2.73 R
3148 3207 0.037326 GGATAGGATCGCGGCAATCA 60.037 55.0 6.13 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 2.913060 GCGGCGGACCTAGGATCT 60.913 66.667 17.98 0.00 0.00 2.75
103 104 2.617274 GGTTGAGGTCGCCAGCAAC 61.617 63.158 17.70 17.70 39.01 4.17
283 293 2.593026 GTGGGTGAGAGAGATAGGAGG 58.407 57.143 0.00 0.00 0.00 4.30
315 325 3.118592 GGAATTGAACGAGAGGGATGAGT 60.119 47.826 0.00 0.00 0.00 3.41
460 489 2.232298 GAGGTGAGGAGAAGCCCACG 62.232 65.000 0.00 0.00 38.18 4.94
461 490 2.584391 GGTGAGGAGAAGCCCACGT 61.584 63.158 0.00 0.00 38.18 4.49
464 493 4.379243 AGGAGAAGCCCACGTGCG 62.379 66.667 10.91 2.01 37.37 5.34
484 513 2.480845 GAAAGGGAATGTATCGGACGG 58.519 52.381 0.00 0.00 0.00 4.79
515 544 5.723295 TGATCAAGACATGAAATCTGACGA 58.277 37.500 0.00 0.00 42.54 4.20
521 550 7.489435 TCAAGACATGAAATCTGACGATAGAAC 59.511 37.037 0.00 0.00 34.30 3.01
576 605 8.361889 GGCTTGGTTTTACTGTCCTTAATTTAA 58.638 33.333 0.00 0.00 0.00 1.52
577 606 9.188588 GCTTGGTTTTACTGTCCTTAATTTAAC 57.811 33.333 0.00 0.00 0.00 2.01
580 609 9.186837 TGGTTTTACTGTCCTTAATTTAACACA 57.813 29.630 0.00 0.00 0.00 3.72
581 610 9.454585 GGTTTTACTGTCCTTAATTTAACACAC 57.545 33.333 0.00 0.00 0.00 3.82
582 611 9.454585 GTTTTACTGTCCTTAATTTAACACACC 57.545 33.333 0.00 0.00 0.00 4.16
583 612 7.748691 TTACTGTCCTTAATTTAACACACCC 57.251 36.000 0.00 0.00 0.00 4.61
584 613 5.697067 ACTGTCCTTAATTTAACACACCCA 58.303 37.500 0.00 0.00 0.00 4.51
585 614 6.130569 ACTGTCCTTAATTTAACACACCCAA 58.869 36.000 0.00 0.00 0.00 4.12
586 615 6.608002 ACTGTCCTTAATTTAACACACCCAAA 59.392 34.615 0.00 0.00 0.00 3.28
587 616 7.045126 TGTCCTTAATTTAACACACCCAAAG 57.955 36.000 0.00 0.00 0.00 2.77
588 617 6.608002 TGTCCTTAATTTAACACACCCAAAGT 59.392 34.615 0.00 0.00 0.00 2.66
600 629 3.968649 CACCCAAAGTGTTCAGATTGTG 58.031 45.455 0.00 0.00 41.93 3.33
601 630 3.631686 CACCCAAAGTGTTCAGATTGTGA 59.368 43.478 0.00 0.00 41.93 3.58
602 631 4.097741 CACCCAAAGTGTTCAGATTGTGAA 59.902 41.667 0.00 0.00 41.93 3.18
610 639 3.870723 TTCAGATTGTGAAAACGGACG 57.129 42.857 0.00 0.00 42.49 4.79
611 640 2.139917 TCAGATTGTGAAAACGGACGG 58.860 47.619 0.00 0.00 29.64 4.79
612 641 1.871039 CAGATTGTGAAAACGGACGGT 59.129 47.619 0.00 0.00 0.00 4.83
613 642 2.096417 CAGATTGTGAAAACGGACGGTC 60.096 50.000 0.00 0.00 0.00 4.79
614 643 1.868498 GATTGTGAAAACGGACGGTCA 59.132 47.619 10.76 0.00 0.00 4.02
615 644 1.292061 TTGTGAAAACGGACGGTCAG 58.708 50.000 10.76 8.69 0.00 3.51
616 645 0.460722 TGTGAAAACGGACGGTCAGA 59.539 50.000 15.16 0.00 0.00 3.27
617 646 1.134759 TGTGAAAACGGACGGTCAGAA 60.135 47.619 15.16 0.00 0.00 3.02
618 647 1.935199 GTGAAAACGGACGGTCAGAAA 59.065 47.619 15.16 0.00 0.00 2.52
619 648 1.935199 TGAAAACGGACGGTCAGAAAC 59.065 47.619 15.16 4.45 0.00 2.78
620 649 1.262417 GAAAACGGACGGTCAGAAACC 59.738 52.381 15.16 0.00 45.45 3.27
621 650 0.533531 AAACGGACGGTCAGAAACCC 60.534 55.000 15.16 0.00 46.27 4.11
622 651 1.688269 AACGGACGGTCAGAAACCCA 61.688 55.000 15.16 0.00 46.27 4.51
623 652 1.070105 CGGACGGTCAGAAACCCAA 59.930 57.895 10.76 0.00 46.27 4.12
624 653 0.533308 CGGACGGTCAGAAACCCAAA 60.533 55.000 10.76 0.00 46.27 3.28
625 654 1.682740 GGACGGTCAGAAACCCAAAA 58.317 50.000 10.76 0.00 46.27 2.44
626 655 2.235891 GGACGGTCAGAAACCCAAAAT 58.764 47.619 10.76 0.00 46.27 1.82
627 656 2.030274 GGACGGTCAGAAACCCAAAATG 60.030 50.000 10.76 0.00 46.27 2.32
628 657 1.960689 ACGGTCAGAAACCCAAAATGG 59.039 47.619 0.00 0.00 46.27 3.16
629 658 1.336795 CGGTCAGAAACCCAAAATGGC 60.337 52.381 0.00 0.00 46.27 4.40
630 659 1.970640 GGTCAGAAACCCAAAATGGCT 59.029 47.619 0.00 0.00 42.85 4.75
631 660 2.289010 GGTCAGAAACCCAAAATGGCTG 60.289 50.000 0.00 0.00 42.85 4.85
632 661 2.627699 GTCAGAAACCCAAAATGGCTGA 59.372 45.455 0.00 0.00 35.79 4.26
633 662 2.892852 TCAGAAACCCAAAATGGCTGAG 59.107 45.455 0.00 0.00 35.79 3.35
634 663 2.892852 CAGAAACCCAAAATGGCTGAGA 59.107 45.455 0.00 0.00 35.79 3.27
635 664 3.057033 CAGAAACCCAAAATGGCTGAGAG 60.057 47.826 0.00 0.00 35.79 3.20
636 665 2.978156 AACCCAAAATGGCTGAGAGA 57.022 45.000 0.00 0.00 35.79 3.10
637 666 2.503895 ACCCAAAATGGCTGAGAGAG 57.496 50.000 0.00 0.00 35.79 3.20
645 674 4.908790 GCTGAGAGAGCTCGCTTT 57.091 55.556 21.50 0.00 45.21 3.51
647 676 1.838913 GCTGAGAGAGCTCGCTTTAG 58.161 55.000 21.50 20.99 45.21 1.85
648 677 1.403679 GCTGAGAGAGCTCGCTTTAGA 59.596 52.381 25.77 11.14 45.21 2.10
649 678 2.034558 GCTGAGAGAGCTCGCTTTAGAT 59.965 50.000 25.77 5.76 45.21 1.98
650 679 3.631144 CTGAGAGAGCTCGCTTTAGATG 58.369 50.000 21.50 4.97 44.33 2.90
651 680 2.223688 TGAGAGAGCTCGCTTTAGATGC 60.224 50.000 21.50 7.24 44.33 3.91
665 694 7.653767 GCTTTAGATGCGGTTATTATACTGT 57.346 36.000 0.00 0.00 0.00 3.55
666 695 7.730778 GCTTTAGATGCGGTTATTATACTGTC 58.269 38.462 0.00 0.00 0.00 3.51
667 696 7.148623 GCTTTAGATGCGGTTATTATACTGTCC 60.149 40.741 0.00 0.00 0.00 4.02
668 697 7.534723 TTAGATGCGGTTATTATACTGTCCT 57.465 36.000 0.00 0.00 0.00 3.85
669 698 6.420913 AGATGCGGTTATTATACTGTCCTT 57.579 37.500 0.00 0.00 0.00 3.36
670 699 7.534723 AGATGCGGTTATTATACTGTCCTTA 57.465 36.000 0.00 0.00 0.00 2.69
671 700 7.959175 AGATGCGGTTATTATACTGTCCTTAA 58.041 34.615 0.00 0.00 0.00 1.85
672 701 8.594550 AGATGCGGTTATTATACTGTCCTTAAT 58.405 33.333 0.00 0.00 0.00 1.40
673 702 9.865321 GATGCGGTTATTATACTGTCCTTAATA 57.135 33.333 0.00 0.00 0.00 0.98
675 704 9.647797 TGCGGTTATTATACTGTCCTTAATATG 57.352 33.333 0.00 0.00 0.00 1.78
676 705 9.649167 GCGGTTATTATACTGTCCTTAATATGT 57.351 33.333 0.00 0.00 0.00 2.29
683 712 4.683832 ACTGTCCTTAATATGTGTCTCGC 58.316 43.478 0.00 0.00 0.00 5.03
684 713 4.159693 ACTGTCCTTAATATGTGTCTCGCA 59.840 41.667 0.00 0.00 0.00 5.10
692 721 3.170585 GTGTCTCGCACGTACCGC 61.171 66.667 3.20 0.00 38.45 5.68
702 731 2.179767 CGTACCGCGTGGACATGA 59.820 61.111 24.59 0.00 39.21 3.07
703 732 1.444724 CGTACCGCGTGGACATGAA 60.445 57.895 24.59 0.00 39.21 2.57
704 733 1.009903 CGTACCGCGTGGACATGAAA 61.010 55.000 24.59 0.00 39.21 2.69
705 734 1.149987 GTACCGCGTGGACATGAAAA 58.850 50.000 24.59 0.00 39.21 2.29
706 735 1.532007 GTACCGCGTGGACATGAAAAA 59.468 47.619 24.59 0.00 39.21 1.94
707 736 0.309612 ACCGCGTGGACATGAAAAAC 59.690 50.000 24.59 0.00 39.21 2.43
708 737 0.591170 CCGCGTGGACATGAAAAACT 59.409 50.000 10.20 0.00 37.49 2.66
745 774 1.136147 CCGTACTGTCGTCTTCCGG 59.864 63.158 0.00 0.00 37.11 5.14
760 792 2.989824 CGGTGGACGGTGAGGAGT 60.990 66.667 0.00 0.00 39.42 3.85
806 838 0.735632 CGAGCAGCACAGAGAAGGTC 60.736 60.000 0.00 0.00 0.00 3.85
815 847 4.070552 GAGAAGGTCCTGCGCGGT 62.071 66.667 16.49 0.00 0.00 5.68
872 904 1.605165 TGATTTCCGCCGGGCTTTT 60.605 52.632 18.34 0.00 0.00 2.27
885 917 1.212751 GCTTTTCCGCACCACCATC 59.787 57.895 0.00 0.00 0.00 3.51
918 950 1.556564 GCGCGTGTATAAGAAGAGCA 58.443 50.000 8.43 0.00 0.00 4.26
919 951 2.128035 GCGCGTGTATAAGAAGAGCAT 58.872 47.619 8.43 0.00 0.00 3.79
921 953 3.372060 CGCGTGTATAAGAAGAGCATCA 58.628 45.455 0.00 0.00 37.82 3.07
922 954 3.180584 CGCGTGTATAAGAAGAGCATCAC 59.819 47.826 0.00 0.00 37.82 3.06
923 955 3.180584 GCGTGTATAAGAAGAGCATCACG 59.819 47.826 9.45 9.45 46.16 4.35
924 956 4.598062 CGTGTATAAGAAGAGCATCACGA 58.402 43.478 8.33 0.00 46.26 4.35
925 957 4.438145 CGTGTATAAGAAGAGCATCACGAC 59.562 45.833 8.33 0.00 46.26 4.34
926 958 4.438145 GTGTATAAGAAGAGCATCACGACG 59.562 45.833 0.00 0.00 37.82 5.12
927 959 1.909376 TAAGAAGAGCATCACGACGC 58.091 50.000 0.00 0.00 37.82 5.19
928 960 0.737715 AAGAAGAGCATCACGACGCC 60.738 55.000 0.00 0.00 37.82 5.68
929 961 2.507102 AAGAGCATCACGACGCCG 60.507 61.111 0.00 0.00 37.82 6.46
930 962 3.989698 AAGAGCATCACGACGCCGG 62.990 63.158 0.00 0.00 40.78 6.13
931 963 4.492160 GAGCATCACGACGCCGGA 62.492 66.667 5.05 0.00 40.78 5.14
932 964 4.498520 AGCATCACGACGCCGGAG 62.499 66.667 5.05 3.72 40.78 4.63
933 965 4.492160 GCATCACGACGCCGGAGA 62.492 66.667 13.83 0.00 40.78 3.71
934 966 2.180769 CATCACGACGCCGGAGAA 59.819 61.111 13.83 0.00 40.78 2.87
935 967 1.226974 CATCACGACGCCGGAGAAT 60.227 57.895 13.83 0.00 40.78 2.40
936 968 1.226974 ATCACGACGCCGGAGAATG 60.227 57.895 13.83 6.98 40.78 2.67
937 969 1.663379 ATCACGACGCCGGAGAATGA 61.663 55.000 13.83 12.40 40.78 2.57
938 970 1.445410 CACGACGCCGGAGAATGAA 60.445 57.895 13.83 0.00 40.78 2.57
939 971 1.445582 ACGACGCCGGAGAATGAAC 60.446 57.895 13.83 0.00 40.78 3.18
940 972 1.153823 CGACGCCGGAGAATGAACT 60.154 57.895 13.83 0.00 0.00 3.01
941 973 1.140407 CGACGCCGGAGAATGAACTC 61.140 60.000 13.83 0.00 36.31 3.01
942 974 0.108804 GACGCCGGAGAATGAACTCA 60.109 55.000 13.83 0.00 38.51 3.41
943 975 0.389948 ACGCCGGAGAATGAACTCAC 60.390 55.000 13.83 0.00 38.51 3.51
944 976 1.084370 CGCCGGAGAATGAACTCACC 61.084 60.000 5.05 0.00 38.51 4.02
945 977 0.744771 GCCGGAGAATGAACTCACCC 60.745 60.000 5.05 0.00 38.51 4.61
946 978 0.613260 CCGGAGAATGAACTCACCCA 59.387 55.000 0.00 0.00 38.51 4.51
968 1000 0.179156 CCACTGATCGCCATTTGCAC 60.179 55.000 0.00 0.00 41.33 4.57
987 1019 1.513158 CGTAGAGTGGCACAGAGGG 59.487 63.158 21.41 1.89 41.80 4.30
988 1020 1.901085 GTAGAGTGGCACAGAGGGG 59.099 63.158 21.41 0.00 41.80 4.79
995 1027 2.267324 GCACAGAGGGGCAGAGAC 59.733 66.667 0.00 0.00 0.00 3.36
997 1029 2.681778 ACAGAGGGGCAGAGACCG 60.682 66.667 0.00 0.00 0.00 4.79
999 1031 2.363147 AGAGGGGCAGAGACCGTC 60.363 66.667 3.44 3.44 45.12 4.79
1048 1080 2.202743 ACGCGATGTCATCCGTGG 60.203 61.111 15.93 5.20 40.20 4.94
1110 1142 2.202492 CTGGAGACGCTCGTTCCG 60.202 66.667 14.20 8.65 33.60 4.30
1121 1153 2.742372 CGTTCCGAAGCCCTGTGG 60.742 66.667 0.00 0.00 0.00 4.17
1182 1214 2.256591 GGGTCACAGCACTGCACTG 61.257 63.158 3.30 1.47 41.08 3.66
1186 1218 1.592400 CACAGCACTGCACTGACGA 60.592 57.895 9.59 0.00 38.55 4.20
1190 1222 0.250038 AGCACTGCACTGACGAATGT 60.250 50.000 3.30 0.00 0.00 2.71
1191 1223 1.000843 AGCACTGCACTGACGAATGTA 59.999 47.619 3.30 0.00 0.00 2.29
1193 1225 2.029728 GCACTGCACTGACGAATGTATC 59.970 50.000 0.00 0.00 0.00 2.24
1194 1226 3.515630 CACTGCACTGACGAATGTATCT 58.484 45.455 0.00 0.00 0.00 1.98
1198 1233 3.193479 TGCACTGACGAATGTATCTCTGT 59.807 43.478 0.00 0.00 0.00 3.41
1204 1239 3.775202 ACGAATGTATCTCTGTGCAGAC 58.225 45.455 0.00 0.00 33.22 3.51
1210 1245 1.908340 ATCTCTGTGCAGACCTGGCC 61.908 60.000 0.00 0.00 33.22 5.36
1373 1411 1.414550 GAGGTAAGGCTCTGTGATCCC 59.585 57.143 0.00 0.00 0.00 3.85
1396 1434 6.234177 CCTAGTGTTCTCTGGAAAACATCTT 58.766 40.000 2.54 0.00 41.01 2.40
1469 1507 0.107165 AATTCCAGGACTAAGGGCGC 60.107 55.000 0.00 0.00 0.00 6.53
1530 1568 4.186159 GTCATAAACGTTGGCCTAAGCTA 58.814 43.478 3.32 0.00 39.73 3.32
1570 1608 3.865164 GTGCAAAAAGGTTCAGAACTTGG 59.135 43.478 13.13 0.00 0.00 3.61
1579 1617 3.003378 GGTTCAGAACTTGGAAAGGTTCG 59.997 47.826 13.13 0.00 45.56 3.95
1580 1618 2.846193 TCAGAACTTGGAAAGGTTCGG 58.154 47.619 0.00 0.00 45.56 4.30
1597 1635 1.003003 TCGGATGAATGTTGGACTGCA 59.997 47.619 0.00 0.00 0.00 4.41
1608 1646 4.724399 TGTTGGACTGCATTCTTTTCCTA 58.276 39.130 3.88 0.00 0.00 2.94
1609 1647 4.761739 TGTTGGACTGCATTCTTTTCCTAG 59.238 41.667 3.88 0.00 0.00 3.02
1612 1650 3.942115 GGACTGCATTCTTTTCCTAGACC 59.058 47.826 3.88 0.00 0.00 3.85
1640 1678 4.992319 GCTCTCATTCATCTCATCTTCCAG 59.008 45.833 0.00 0.00 0.00 3.86
1685 1725 2.941064 CCCAGTCTACATCAGCAACATG 59.059 50.000 0.00 0.00 0.00 3.21
1703 1743 2.123428 GCACAGGGCTAAGCATGGG 61.123 63.158 0.00 0.00 40.25 4.00
1727 1767 1.002033 GACACCTCAACGTACGACACT 60.002 52.381 24.41 0.00 0.00 3.55
1740 1780 1.268899 ACGACACTGAAGGAAGGTACG 59.731 52.381 0.00 0.00 0.00 3.67
1757 1797 3.479949 GGTACGTACGTAGCTTGAATTCG 59.520 47.826 37.20 4.39 43.38 3.34
1786 1826 7.061752 ACTAGTTCAGAAAACGTCATATTGC 57.938 36.000 0.00 0.00 0.00 3.56
1790 1830 4.242475 TCAGAAAACGTCATATTGCTCGT 58.758 39.130 0.00 0.00 38.15 4.18
1831 1871 2.741985 CATGACCGGCTTGTGCGA 60.742 61.111 0.00 0.00 40.82 5.10
1888 1928 3.753272 ACAACATATTCAGCAAGAACGCT 59.247 39.130 0.00 0.00 45.21 5.07
1915 1955 0.817634 TGCCGGACAAACTCACCTTG 60.818 55.000 5.05 0.00 0.00 3.61
1982 2022 1.416243 ACCTGGACGGTGAACACTTA 58.584 50.000 0.00 0.00 46.80 2.24
1988 2028 2.095919 GGACGGTGAACACTTATGCAAC 60.096 50.000 0.00 0.00 0.00 4.17
1992 2032 2.412847 GGTGAACACTTATGCAACGCTC 60.413 50.000 0.00 0.00 0.00 5.03
1994 2034 3.073678 TGAACACTTATGCAACGCTCAT 58.926 40.909 0.00 0.00 0.00 2.90
1995 2035 3.120234 TGAACACTTATGCAACGCTCATG 60.120 43.478 0.00 0.00 0.00 3.07
1996 2036 1.131126 ACACTTATGCAACGCTCATGC 59.869 47.619 0.00 0.00 44.08 4.06
2006 2046 1.466856 ACGCTCATGCCATTTGATGT 58.533 45.000 0.00 0.00 35.36 3.06
2008 2048 1.268896 CGCTCATGCCATTTGATGTCC 60.269 52.381 0.00 0.00 35.36 4.02
2023 2071 3.007940 TGATGTCCGTTCCAGTTTCTCAT 59.992 43.478 0.00 0.00 0.00 2.90
2026 2074 4.963373 TGTCCGTTCCAGTTTCTCATTAA 58.037 39.130 0.00 0.00 0.00 1.40
2049 2097 9.734620 TTAACTGAAATGCTTATGTTATCATGC 57.265 29.630 0.00 0.00 35.70 4.06
2050 2098 7.578310 ACTGAAATGCTTATGTTATCATGCT 57.422 32.000 0.00 0.00 35.70 3.79
2086 2134 2.287909 GCGAGTAAGCTGGAGTGGATAG 60.288 54.545 0.00 0.00 0.00 2.08
2091 2139 3.340814 AAGCTGGAGTGGATAGTGTTG 57.659 47.619 0.00 0.00 0.00 3.33
2092 2140 2.260822 AGCTGGAGTGGATAGTGTTGT 58.739 47.619 0.00 0.00 0.00 3.32
2093 2141 3.441101 AGCTGGAGTGGATAGTGTTGTA 58.559 45.455 0.00 0.00 0.00 2.41
2094 2142 3.195825 AGCTGGAGTGGATAGTGTTGTAC 59.804 47.826 0.00 0.00 0.00 2.90
2095 2143 3.195825 GCTGGAGTGGATAGTGTTGTACT 59.804 47.826 0.00 0.00 43.56 2.73
2096 2144 4.678309 GCTGGAGTGGATAGTGTTGTACTC 60.678 50.000 0.00 0.00 40.89 2.59
2097 2145 4.388378 GGAGTGGATAGTGTTGTACTCC 57.612 50.000 0.00 0.00 44.94 3.85
2098 2146 3.132467 GGAGTGGATAGTGTTGTACTCCC 59.868 52.174 9.49 0.00 45.23 4.30
2099 2147 4.024670 GAGTGGATAGTGTTGTACTCCCT 58.975 47.826 0.00 0.00 40.89 4.20
2100 2148 4.024670 AGTGGATAGTGTTGTACTCCCTC 58.975 47.826 0.00 0.00 40.89 4.30
2101 2149 3.132467 GTGGATAGTGTTGTACTCCCTCC 59.868 52.174 0.00 0.00 40.89 4.30
2102 2150 2.361438 GGATAGTGTTGTACTCCCTCCG 59.639 54.545 0.00 0.00 40.89 4.63
2103 2151 2.592102 TAGTGTTGTACTCCCTCCGT 57.408 50.000 0.00 0.00 40.89 4.69
2104 2152 1.713297 AGTGTTGTACTCCCTCCGTT 58.287 50.000 0.00 0.00 33.17 4.44
2105 2153 2.044758 AGTGTTGTACTCCCTCCGTTT 58.955 47.619 0.00 0.00 33.17 3.60
2106 2154 2.036862 AGTGTTGTACTCCCTCCGTTTC 59.963 50.000 0.00 0.00 33.17 2.78
2107 2155 2.036862 GTGTTGTACTCCCTCCGTTTCT 59.963 50.000 0.00 0.00 0.00 2.52
2108 2156 2.701951 TGTTGTACTCCCTCCGTTTCTT 59.298 45.455 0.00 0.00 0.00 2.52
2109 2157 3.135167 TGTTGTACTCCCTCCGTTTCTTT 59.865 43.478 0.00 0.00 0.00 2.52
2110 2158 4.132336 GTTGTACTCCCTCCGTTTCTTTT 58.868 43.478 0.00 0.00 0.00 2.27
2111 2159 4.426736 TGTACTCCCTCCGTTTCTTTTT 57.573 40.909 0.00 0.00 0.00 1.94
2112 2160 5.549742 TGTACTCCCTCCGTTTCTTTTTA 57.450 39.130 0.00 0.00 0.00 1.52
2113 2161 5.544650 TGTACTCCCTCCGTTTCTTTTTAG 58.455 41.667 0.00 0.00 0.00 1.85
2114 2162 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
2115 2163 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
2116 2164 4.001652 CTCCCTCCGTTTCTTTTTAGTCC 58.998 47.826 0.00 0.00 0.00 3.85
2117 2165 2.740447 CCCTCCGTTTCTTTTTAGTCCG 59.260 50.000 0.00 0.00 0.00 4.79
2118 2166 2.159037 CCTCCGTTTCTTTTTAGTCCGC 59.841 50.000 0.00 0.00 0.00 5.54
2119 2167 2.803956 CTCCGTTTCTTTTTAGTCCGCA 59.196 45.455 0.00 0.00 0.00 5.69
2120 2168 3.404899 TCCGTTTCTTTTTAGTCCGCAT 58.595 40.909 0.00 0.00 0.00 4.73
2121 2169 4.567971 TCCGTTTCTTTTTAGTCCGCATA 58.432 39.130 0.00 0.00 0.00 3.14
2122 2170 5.180271 TCCGTTTCTTTTTAGTCCGCATAT 58.820 37.500 0.00 0.00 0.00 1.78
2123 2171 6.339730 TCCGTTTCTTTTTAGTCCGCATATA 58.660 36.000 0.00 0.00 0.00 0.86
2124 2172 6.817641 TCCGTTTCTTTTTAGTCCGCATATAA 59.182 34.615 0.00 0.00 0.00 0.98
2125 2173 7.010738 TCCGTTTCTTTTTAGTCCGCATATAAG 59.989 37.037 0.00 0.00 0.00 1.73
2126 2174 7.123830 CGTTTCTTTTTAGTCCGCATATAAGG 58.876 38.462 0.00 0.00 0.00 2.69
2127 2175 7.201582 CGTTTCTTTTTAGTCCGCATATAAGGT 60.202 37.037 0.00 0.00 0.00 3.50
2128 2176 8.456471 GTTTCTTTTTAGTCCGCATATAAGGTT 58.544 33.333 0.00 0.00 0.00 3.50
2129 2177 8.570068 TTCTTTTTAGTCCGCATATAAGGTTT 57.430 30.769 0.00 0.00 0.00 3.27
2130 2178 7.981142 TCTTTTTAGTCCGCATATAAGGTTTG 58.019 34.615 0.00 0.00 0.00 2.93
2131 2179 6.687081 TTTTAGTCCGCATATAAGGTTTGG 57.313 37.500 0.00 0.00 0.00 3.28
2132 2180 3.926058 AGTCCGCATATAAGGTTTGGT 57.074 42.857 0.00 0.00 0.00 3.67
2133 2181 3.805207 AGTCCGCATATAAGGTTTGGTC 58.195 45.455 0.00 0.00 0.00 4.02
2134 2182 3.199071 AGTCCGCATATAAGGTTTGGTCA 59.801 43.478 0.00 0.00 0.00 4.02
2135 2183 3.942748 GTCCGCATATAAGGTTTGGTCAA 59.057 43.478 0.00 0.00 0.00 3.18
2136 2184 4.396790 GTCCGCATATAAGGTTTGGTCAAA 59.603 41.667 0.00 0.00 0.00 2.69
2137 2185 4.638421 TCCGCATATAAGGTTTGGTCAAAG 59.362 41.667 0.00 0.00 0.00 2.77
2138 2186 4.398044 CCGCATATAAGGTTTGGTCAAAGT 59.602 41.667 0.00 0.00 0.00 2.66
2139 2187 5.448632 CCGCATATAAGGTTTGGTCAAAGTC 60.449 44.000 0.00 0.00 0.00 3.01
2140 2188 5.123186 CGCATATAAGGTTTGGTCAAAGTCA 59.877 40.000 0.00 0.00 0.00 3.41
2141 2189 6.348950 CGCATATAAGGTTTGGTCAAAGTCAA 60.349 38.462 0.00 0.00 0.00 3.18
2142 2190 7.029563 GCATATAAGGTTTGGTCAAAGTCAAG 58.970 38.462 0.00 0.00 0.00 3.02
2143 2191 3.801114 AAGGTTTGGTCAAAGTCAAGC 57.199 42.857 0.00 0.00 0.00 4.01
2144 2192 3.018423 AGGTTTGGTCAAAGTCAAGCT 57.982 42.857 0.00 0.00 0.00 3.74
2145 2193 3.365472 AGGTTTGGTCAAAGTCAAGCTT 58.635 40.909 0.00 0.00 39.52 3.74
2158 2206 6.610741 AAGTCAAGCTTTGTAGAGTTTGAG 57.389 37.500 0.00 0.00 44.12 3.02
2159 2207 5.675538 AGTCAAGCTTTGTAGAGTTTGAGT 58.324 37.500 0.00 5.47 44.12 3.41
2160 2208 6.817184 AGTCAAGCTTTGTAGAGTTTGAGTA 58.183 36.000 0.00 0.00 43.92 2.59
2161 2209 7.272978 AGTCAAGCTTTGTAGAGTTTGAGTAA 58.727 34.615 0.00 0.00 43.92 2.24
2162 2210 7.224949 AGTCAAGCTTTGTAGAGTTTGAGTAAC 59.775 37.037 0.00 0.00 43.92 2.50
2164 2212 7.769044 TCAAGCTTTGTAGAGTTTGAGTAACTT 59.231 33.333 0.00 0.00 47.00 2.66
2165 2213 8.398665 CAAGCTTTGTAGAGTTTGAGTAACTTT 58.601 33.333 0.00 0.00 47.00 2.66
2166 2214 9.609346 AAGCTTTGTAGAGTTTGAGTAACTTTA 57.391 29.630 0.00 0.00 47.00 1.85
2167 2215 9.780186 AGCTTTGTAGAGTTTGAGTAACTTTAT 57.220 29.630 0.00 0.00 47.00 1.40
2215 2263 9.926751 CGATATGAAATCAATATTACCAGATGC 57.073 33.333 0.00 0.00 0.00 3.91
2218 2266 7.275888 TGAAATCAATATTACCAGATGCACC 57.724 36.000 0.00 0.00 0.00 5.01
2219 2267 6.832900 TGAAATCAATATTACCAGATGCACCA 59.167 34.615 0.00 0.00 0.00 4.17
2220 2268 7.506599 TGAAATCAATATTACCAGATGCACCAT 59.493 33.333 0.00 0.00 0.00 3.55
2221 2269 6.829229 ATCAATATTACCAGATGCACCATG 57.171 37.500 0.00 0.00 0.00 3.66
2222 2270 5.939447 TCAATATTACCAGATGCACCATGA 58.061 37.500 0.00 0.00 0.00 3.07
2223 2271 6.363882 TCAATATTACCAGATGCACCATGAA 58.636 36.000 0.00 0.00 0.00 2.57
2224 2272 6.832900 TCAATATTACCAGATGCACCATGAAA 59.167 34.615 0.00 0.00 0.00 2.69
2225 2273 4.989279 ATTACCAGATGCACCATGAAAC 57.011 40.909 0.00 0.00 0.00 2.78
2226 2274 2.291209 ACCAGATGCACCATGAAACA 57.709 45.000 0.00 0.00 0.00 2.83
2227 2275 2.811410 ACCAGATGCACCATGAAACAT 58.189 42.857 0.00 0.00 0.00 2.71
2228 2276 3.966979 ACCAGATGCACCATGAAACATA 58.033 40.909 0.00 0.00 0.00 2.29
2229 2277 4.539726 ACCAGATGCACCATGAAACATAT 58.460 39.130 0.00 0.00 0.00 1.78
2230 2278 4.957954 ACCAGATGCACCATGAAACATATT 59.042 37.500 0.00 0.00 0.00 1.28
2231 2279 5.422970 ACCAGATGCACCATGAAACATATTT 59.577 36.000 0.00 0.00 0.00 1.40
2232 2280 6.070653 ACCAGATGCACCATGAAACATATTTT 60.071 34.615 0.00 0.00 0.00 1.82
2233 2281 6.477688 CCAGATGCACCATGAAACATATTTTC 59.522 38.462 0.00 4.41 0.00 2.29
2234 2282 7.036829 CAGATGCACCATGAAACATATTTTCA 58.963 34.615 12.41 12.41 41.91 2.69
2235 2283 7.709182 CAGATGCACCATGAAACATATTTTCAT 59.291 33.333 14.74 14.74 46.59 2.57
2236 2284 8.916062 AGATGCACCATGAAACATATTTTCATA 58.084 29.630 17.74 8.83 44.60 2.15
2237 2285 9.701098 GATGCACCATGAAACATATTTTCATAT 57.299 29.630 17.74 11.60 44.60 1.78
2346 2394 5.964958 TGCAGAGTAAAAAGAAATGGAGG 57.035 39.130 0.00 0.00 0.00 4.30
2347 2395 5.630121 TGCAGAGTAAAAAGAAATGGAGGA 58.370 37.500 0.00 0.00 0.00 3.71
2348 2396 6.068010 TGCAGAGTAAAAAGAAATGGAGGAA 58.932 36.000 0.00 0.00 0.00 3.36
2358 2406 3.008049 AGAAATGGAGGAAGTACGTGCTT 59.992 43.478 19.27 19.27 0.00 3.91
2363 2411 0.320771 AGGAAGTACGTGCTTGCCAG 60.321 55.000 28.77 0.00 37.50 4.85
2366 2414 0.679505 AAGTACGTGCTTGCCAGAGA 59.320 50.000 18.52 0.00 0.00 3.10
2368 2416 0.319555 GTACGTGCTTGCCAGAGACA 60.320 55.000 0.00 0.00 0.00 3.41
2370 2418 0.882042 ACGTGCTTGCCAGAGACAAG 60.882 55.000 0.00 0.00 45.88 3.16
2410 2458 4.047834 CAGTTCGTGGCTGCTTCA 57.952 55.556 0.00 0.00 0.00 3.02
2438 2486 1.361668 CTGTTCGAGTCCATTGCCCG 61.362 60.000 0.00 0.00 0.00 6.13
2440 2488 3.969250 TTCGAGTCCATTGCCCGGC 62.969 63.158 1.04 1.04 0.00 6.13
2455 2503 0.039165 CCGGCAAAGGAAAGAAGCAC 60.039 55.000 0.00 0.00 0.00 4.40
2463 2511 2.856222 AGGAAAGAAGCACACCAGAAG 58.144 47.619 0.00 0.00 0.00 2.85
2471 2519 4.816925 AGAAGCACACCAGAAGAAGTAAAC 59.183 41.667 0.00 0.00 0.00 2.01
2472 2520 4.150897 AGCACACCAGAAGAAGTAAACA 57.849 40.909 0.00 0.00 0.00 2.83
2473 2521 3.877508 AGCACACCAGAAGAAGTAAACAC 59.122 43.478 0.00 0.00 0.00 3.32
2474 2522 3.625764 GCACACCAGAAGAAGTAAACACA 59.374 43.478 0.00 0.00 0.00 3.72
2475 2523 4.275936 GCACACCAGAAGAAGTAAACACAT 59.724 41.667 0.00 0.00 0.00 3.21
2479 2527 3.758554 CCAGAAGAAGTAAACACATGGGG 59.241 47.826 0.00 0.00 0.00 4.96
2480 2528 3.758554 CAGAAGAAGTAAACACATGGGGG 59.241 47.826 0.00 0.00 0.00 5.40
2481 2529 3.397955 AGAAGAAGTAAACACATGGGGGT 59.602 43.478 0.00 0.00 0.00 4.95
2493 2544 0.608035 ATGGGGGTGTGCGTACTTTG 60.608 55.000 4.97 0.00 0.00 2.77
2529 2580 6.463995 AGAAATAAATAATCAAAGGCGCCA 57.536 33.333 31.54 8.23 0.00 5.69
2530 2581 6.273071 AGAAATAAATAATCAAAGGCGCCAC 58.727 36.000 31.54 1.27 0.00 5.01
2531 2582 2.959507 AAATAATCAAAGGCGCCACC 57.040 45.000 31.54 0.33 39.61 4.61
2532 2583 1.111277 AATAATCAAAGGCGCCACCC 58.889 50.000 31.54 0.00 40.58 4.61
2533 2584 0.258774 ATAATCAAAGGCGCCACCCT 59.741 50.000 31.54 4.11 40.58 4.34
2613 2664 4.039357 CACCGTCGTCTGACCGCT 62.039 66.667 1.55 0.00 42.37 5.52
2698 2756 4.069232 CTCCAGCTCGCGGGACAA 62.069 66.667 12.03 0.00 35.46 3.18
2700 2758 4.680237 CCAGCTCGCGGGACAACA 62.680 66.667 12.03 0.00 32.98 3.33
2835 2893 4.802051 GAATCCTGCTGCGGGGCA 62.802 66.667 26.46 9.56 40.15 5.36
2922 2980 1.462616 CCGCCTCAAATCCATTGTCA 58.537 50.000 0.00 0.00 40.11 3.58
2959 3018 0.681243 CCCCTTTAGGCCAAGCTGAC 60.681 60.000 5.01 0.00 0.00 3.51
3148 3207 4.435436 TCAGAGCATCGCCGCGTT 62.435 61.111 13.39 0.68 42.67 4.84
3169 3228 0.615331 ATTGCCGCGATCCTATCCAT 59.385 50.000 8.23 0.00 0.00 3.41
3316 3379 1.302192 CCGTTTCCCTTCGCCTTCA 60.302 57.895 0.00 0.00 0.00 3.02
3322 3385 3.264897 CCTTCGCCTTCATCGCCG 61.265 66.667 0.00 0.00 0.00 6.46
3364 3427 4.394712 CACACCGACCCCTCCAGC 62.395 72.222 0.00 0.00 0.00 4.85
3433 3496 2.125350 CAGACTGCCTTCCTCCGC 60.125 66.667 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 1.295423 GCGACCTCAACCTTAGGCA 59.705 57.895 0.00 0.00 37.67 4.75
82 83 1.295423 GCTGGCGACCTCAACCTTA 59.705 57.895 0.00 0.00 0.00 2.69
103 104 1.811359 AGTAGTTCCGTTGACCTCTCG 59.189 52.381 0.00 0.00 0.00 4.04
219 223 1.215382 CGCGGTCAGATGAGGAACA 59.785 57.895 0.00 0.00 0.00 3.18
269 279 2.292192 CCCCATCCCTCCTATCTCTCTC 60.292 59.091 0.00 0.00 0.00 3.20
283 293 1.485124 GTTCAATTCCCACCCCATCC 58.515 55.000 0.00 0.00 0.00 3.51
376 405 1.944430 GCTCCCGAAACCAAATCGAGT 60.944 52.381 0.00 0.00 42.76 4.18
460 489 1.597663 CCGATACATTCCCTTTCGCAC 59.402 52.381 0.00 0.00 0.00 5.34
461 490 1.483004 TCCGATACATTCCCTTTCGCA 59.517 47.619 0.00 0.00 0.00 5.10
464 493 2.480845 CCGTCCGATACATTCCCTTTC 58.519 52.381 0.00 0.00 0.00 2.62
471 500 0.250793 TGTTGGCCGTCCGATACATT 59.749 50.000 0.00 0.00 34.14 2.71
484 513 4.707030 TCATGTCTTGATCATTGTTGGC 57.293 40.909 0.00 0.00 0.00 4.52
580 609 3.897239 TCACAATCTGAACACTTTGGGT 58.103 40.909 0.00 0.00 0.00 4.51
581 610 4.916983 TTCACAATCTGAACACTTTGGG 57.083 40.909 0.00 0.00 33.65 4.12
582 611 5.229887 CGTTTTCACAATCTGAACACTTTGG 59.770 40.000 0.00 0.00 38.70 3.28
583 612 5.229887 CCGTTTTCACAATCTGAACACTTTG 59.770 40.000 0.00 0.00 38.70 2.77
584 613 5.124776 TCCGTTTTCACAATCTGAACACTTT 59.875 36.000 0.00 0.00 38.70 2.66
585 614 4.638421 TCCGTTTTCACAATCTGAACACTT 59.362 37.500 0.00 0.00 38.70 3.16
586 615 4.035208 GTCCGTTTTCACAATCTGAACACT 59.965 41.667 0.00 0.00 38.70 3.55
587 616 4.279659 GTCCGTTTTCACAATCTGAACAC 58.720 43.478 0.00 0.00 38.70 3.32
588 617 3.001838 CGTCCGTTTTCACAATCTGAACA 59.998 43.478 0.00 0.00 38.70 3.18
589 618 3.541711 CGTCCGTTTTCACAATCTGAAC 58.458 45.455 0.00 0.00 38.70 3.18
590 619 2.546368 CCGTCCGTTTTCACAATCTGAA 59.454 45.455 0.00 0.00 37.08 3.02
591 620 2.139917 CCGTCCGTTTTCACAATCTGA 58.860 47.619 0.00 0.00 0.00 3.27
592 621 1.871039 ACCGTCCGTTTTCACAATCTG 59.129 47.619 0.00 0.00 0.00 2.90
593 622 2.140717 GACCGTCCGTTTTCACAATCT 58.859 47.619 0.00 0.00 0.00 2.40
594 623 1.868498 TGACCGTCCGTTTTCACAATC 59.132 47.619 0.00 0.00 0.00 2.67
595 624 1.871039 CTGACCGTCCGTTTTCACAAT 59.129 47.619 0.00 0.00 0.00 2.71
596 625 1.134759 TCTGACCGTCCGTTTTCACAA 60.135 47.619 0.00 0.00 0.00 3.33
597 626 0.460722 TCTGACCGTCCGTTTTCACA 59.539 50.000 0.00 0.00 0.00 3.58
598 627 1.574134 TTCTGACCGTCCGTTTTCAC 58.426 50.000 0.00 0.00 0.00 3.18
599 628 1.935199 GTTTCTGACCGTCCGTTTTCA 59.065 47.619 0.00 0.00 0.00 2.69
600 629 1.262417 GGTTTCTGACCGTCCGTTTTC 59.738 52.381 0.00 0.00 39.00 2.29
601 630 1.302366 GGTTTCTGACCGTCCGTTTT 58.698 50.000 0.00 0.00 39.00 2.43
602 631 2.996444 GGTTTCTGACCGTCCGTTT 58.004 52.632 0.00 0.00 39.00 3.60
603 632 4.764896 GGTTTCTGACCGTCCGTT 57.235 55.556 0.00 0.00 39.00 4.44
619 648 1.101331 GCTCTCTCAGCCATTTTGGG 58.899 55.000 0.00 0.00 43.17 4.12
629 658 3.631144 CATCTAAAGCGAGCTCTCTCAG 58.369 50.000 12.85 10.14 39.30 3.35
630 659 2.223688 GCATCTAAAGCGAGCTCTCTCA 60.224 50.000 12.85 0.00 39.30 3.27
631 660 2.393764 GCATCTAAAGCGAGCTCTCTC 58.606 52.381 12.85 0.65 35.99 3.20
632 661 2.507339 GCATCTAAAGCGAGCTCTCT 57.493 50.000 12.85 6.22 0.00 3.10
641 670 7.148623 GGACAGTATAATAACCGCATCTAAAGC 60.149 40.741 0.00 0.00 0.00 3.51
642 671 8.088981 AGGACAGTATAATAACCGCATCTAAAG 58.911 37.037 0.00 0.00 0.00 1.85
643 672 7.959175 AGGACAGTATAATAACCGCATCTAAA 58.041 34.615 0.00 0.00 0.00 1.85
644 673 7.534723 AGGACAGTATAATAACCGCATCTAA 57.465 36.000 0.00 0.00 0.00 2.10
645 674 7.534723 AAGGACAGTATAATAACCGCATCTA 57.465 36.000 0.00 0.00 0.00 1.98
646 675 6.420913 AAGGACAGTATAATAACCGCATCT 57.579 37.500 0.00 0.00 0.00 2.90
647 676 8.773404 ATTAAGGACAGTATAATAACCGCATC 57.227 34.615 0.00 0.00 0.00 3.91
649 678 9.647797 CATATTAAGGACAGTATAATAACCGCA 57.352 33.333 0.00 0.00 0.00 5.69
650 679 9.649167 ACATATTAAGGACAGTATAATAACCGC 57.351 33.333 0.00 0.00 0.00 5.68
657 686 8.080417 GCGAGACACATATTAAGGACAGTATAA 58.920 37.037 0.00 0.00 0.00 0.98
658 687 7.229907 TGCGAGACACATATTAAGGACAGTATA 59.770 37.037 0.00 0.00 0.00 1.47
659 688 6.040504 TGCGAGACACATATTAAGGACAGTAT 59.959 38.462 0.00 0.00 0.00 2.12
660 689 5.358725 TGCGAGACACATATTAAGGACAGTA 59.641 40.000 0.00 0.00 0.00 2.74
661 690 4.159693 TGCGAGACACATATTAAGGACAGT 59.840 41.667 0.00 0.00 0.00 3.55
662 691 4.682787 TGCGAGACACATATTAAGGACAG 58.317 43.478 0.00 0.00 0.00 3.51
663 692 4.729227 TGCGAGACACATATTAAGGACA 57.271 40.909 0.00 0.00 0.00 4.02
686 715 1.149987 TTTTCATGTCCACGCGGTAC 58.850 50.000 12.47 5.88 0.00 3.34
687 716 1.532007 GTTTTTCATGTCCACGCGGTA 59.468 47.619 12.47 0.00 0.00 4.02
688 717 0.309612 GTTTTTCATGTCCACGCGGT 59.690 50.000 12.47 0.00 0.00 5.68
689 718 0.591170 AGTTTTTCATGTCCACGCGG 59.409 50.000 12.47 0.00 0.00 6.46
690 719 1.662876 CCAGTTTTTCATGTCCACGCG 60.663 52.381 3.53 3.53 0.00 6.01
691 720 1.930371 GCCAGTTTTTCATGTCCACGC 60.930 52.381 0.00 0.00 0.00 5.34
692 721 1.662876 CGCCAGTTTTTCATGTCCACG 60.663 52.381 0.00 0.00 0.00 4.94
693 722 1.336755 ACGCCAGTTTTTCATGTCCAC 59.663 47.619 0.00 0.00 0.00 4.02
694 723 1.336440 CACGCCAGTTTTTCATGTCCA 59.664 47.619 0.00 0.00 0.00 4.02
695 724 1.930371 GCACGCCAGTTTTTCATGTCC 60.930 52.381 0.00 0.00 0.00 4.02
696 725 1.268999 TGCACGCCAGTTTTTCATGTC 60.269 47.619 0.00 0.00 0.00 3.06
697 726 0.743688 TGCACGCCAGTTTTTCATGT 59.256 45.000 0.00 0.00 0.00 3.21
698 727 1.722464 CATGCACGCCAGTTTTTCATG 59.278 47.619 0.00 0.00 0.00 3.07
699 728 1.612950 TCATGCACGCCAGTTTTTCAT 59.387 42.857 0.00 0.00 0.00 2.57
700 729 1.028130 TCATGCACGCCAGTTTTTCA 58.972 45.000 0.00 0.00 0.00 2.69
701 730 1.786579 GTTCATGCACGCCAGTTTTTC 59.213 47.619 0.00 0.00 0.00 2.29
702 731 1.851658 GTTCATGCACGCCAGTTTTT 58.148 45.000 0.00 0.00 0.00 1.94
703 732 0.317770 CGTTCATGCACGCCAGTTTT 60.318 50.000 4.67 0.00 32.43 2.43
704 733 1.282570 CGTTCATGCACGCCAGTTT 59.717 52.632 4.67 0.00 32.43 2.66
705 734 2.945984 CGTTCATGCACGCCAGTT 59.054 55.556 4.67 0.00 32.43 3.16
745 774 2.048127 GCACTCCTCACCGTCCAC 60.048 66.667 0.00 0.00 0.00 4.02
815 847 0.675837 AGAGTACGTGAGCTGCCGTA 60.676 55.000 9.70 9.70 38.43 4.02
826 858 1.372997 CGTGCAAGGCAGAGTACGT 60.373 57.895 0.00 0.00 40.08 3.57
857 889 2.986979 GGAAAAGCCCGGCGGAAA 60.987 61.111 30.79 0.00 0.00 3.13
872 904 4.077184 GGACGATGGTGGTGCGGA 62.077 66.667 0.00 0.00 0.00 5.54
892 924 1.269444 CTTATACACGCGCGAGGAGC 61.269 60.000 39.36 0.00 43.95 4.70
908 940 1.469251 GGCGTCGTGATGCTCTTCTTA 60.469 52.381 13.31 0.00 42.72 2.10
918 950 1.226974 CATTCTCCGGCGTCGTGAT 60.227 57.895 9.28 0.00 33.95 3.06
919 951 1.868987 TTCATTCTCCGGCGTCGTGA 61.869 55.000 9.28 1.31 33.95 4.35
921 953 1.445582 GTTCATTCTCCGGCGTCGT 60.446 57.895 9.28 0.00 33.95 4.34
922 954 1.140407 GAGTTCATTCTCCGGCGTCG 61.140 60.000 0.29 0.29 0.00 5.12
923 955 0.108804 TGAGTTCATTCTCCGGCGTC 60.109 55.000 6.01 0.00 33.93 5.19
924 956 0.389948 GTGAGTTCATTCTCCGGCGT 60.390 55.000 6.01 0.00 33.93 5.68
925 957 1.084370 GGTGAGTTCATTCTCCGGCG 61.084 60.000 0.00 0.00 33.93 6.46
926 958 0.744771 GGGTGAGTTCATTCTCCGGC 60.745 60.000 0.00 0.00 32.73 6.13
927 959 0.613260 TGGGTGAGTTCATTCTCCGG 59.387 55.000 0.00 0.00 32.73 5.14
928 960 2.698855 ATGGGTGAGTTCATTCTCCG 57.301 50.000 0.00 0.00 32.73 4.63
929 961 3.199946 TGGTATGGGTGAGTTCATTCTCC 59.800 47.826 0.00 0.00 33.93 3.71
930 962 4.080863 AGTGGTATGGGTGAGTTCATTCTC 60.081 45.833 0.00 0.00 35.28 2.87
931 963 3.846588 AGTGGTATGGGTGAGTTCATTCT 59.153 43.478 0.00 0.00 0.00 2.40
932 964 3.941483 CAGTGGTATGGGTGAGTTCATTC 59.059 47.826 0.00 0.00 0.00 2.67
933 965 3.587061 TCAGTGGTATGGGTGAGTTCATT 59.413 43.478 0.00 0.00 0.00 2.57
934 966 3.181329 TCAGTGGTATGGGTGAGTTCAT 58.819 45.455 0.00 0.00 0.00 2.57
935 967 2.615391 TCAGTGGTATGGGTGAGTTCA 58.385 47.619 0.00 0.00 0.00 3.18
936 968 3.738281 CGATCAGTGGTATGGGTGAGTTC 60.738 52.174 0.00 0.00 0.00 3.01
937 969 2.168521 CGATCAGTGGTATGGGTGAGTT 59.831 50.000 0.00 0.00 0.00 3.01
938 970 1.757118 CGATCAGTGGTATGGGTGAGT 59.243 52.381 0.00 0.00 0.00 3.41
939 971 1.539065 GCGATCAGTGGTATGGGTGAG 60.539 57.143 0.00 0.00 0.00 3.51
940 972 0.464036 GCGATCAGTGGTATGGGTGA 59.536 55.000 0.00 0.00 0.00 4.02
941 973 0.532862 GGCGATCAGTGGTATGGGTG 60.533 60.000 0.00 0.00 0.00 4.61
942 974 0.980754 TGGCGATCAGTGGTATGGGT 60.981 55.000 0.00 0.00 0.00 4.51
943 975 0.397941 ATGGCGATCAGTGGTATGGG 59.602 55.000 0.00 0.00 0.00 4.00
944 976 2.260844 AATGGCGATCAGTGGTATGG 57.739 50.000 0.00 0.00 0.00 2.74
945 977 2.287188 GCAAATGGCGATCAGTGGTATG 60.287 50.000 0.00 0.00 0.00 2.39
946 978 1.949525 GCAAATGGCGATCAGTGGTAT 59.050 47.619 0.00 0.00 0.00 2.73
968 1000 1.513158 CCTCTGTGCCACTCTACGG 59.487 63.158 0.00 0.00 0.00 4.02
987 1019 2.512515 GCCATGACGGTCTCTGCC 60.513 66.667 9.88 0.00 36.97 4.85
988 1020 2.887568 CGCCATGACGGTCTCTGC 60.888 66.667 9.88 7.81 36.97 4.26
997 1029 3.950794 TTGCCTCGTCCGCCATGAC 62.951 63.158 0.00 0.00 0.00 3.06
999 1031 2.745884 TTTGCCTCGTCCGCCATG 60.746 61.111 0.00 0.00 0.00 3.66
1165 1197 1.227645 TCAGTGCAGTGCTGTGACC 60.228 57.895 17.07 0.00 35.60 4.02
1182 1214 3.794028 GTCTGCACAGAGATACATTCGTC 59.206 47.826 0.00 0.00 38.27 4.20
1186 1218 3.118482 CCAGGTCTGCACAGAGATACATT 60.118 47.826 0.00 0.00 38.27 2.71
1190 1222 0.826715 GCCAGGTCTGCACAGAGATA 59.173 55.000 0.00 0.00 38.27 1.98
1191 1223 1.601171 GCCAGGTCTGCACAGAGAT 59.399 57.895 0.00 0.00 38.27 2.75
1193 1225 2.046507 GGCCAGGTCTGCACAGAG 60.047 66.667 0.00 0.00 38.27 3.35
1194 1226 3.640407 GGGCCAGGTCTGCACAGA 61.640 66.667 4.39 0.00 34.56 3.41
1220 1255 3.770424 GTACACGTCGGGCGCAAC 61.770 66.667 10.83 2.87 46.11 4.17
1235 1270 1.209504 CTTGCTTCCTTCGGGATGGTA 59.790 52.381 1.11 0.00 44.61 3.25
1328 1366 1.783979 AGTCTCCCAGGGATAGACGAT 59.216 52.381 18.21 3.73 33.75 3.73
1363 1401 4.019858 CAGAGAACACTAGGGATCACAGA 58.980 47.826 0.00 0.00 0.00 3.41
1365 1403 3.099905 CCAGAGAACACTAGGGATCACA 58.900 50.000 0.00 0.00 0.00 3.58
1373 1411 8.877779 CATAAGATGTTTTCCAGAGAACACTAG 58.122 37.037 5.96 0.00 38.46 2.57
1469 1507 2.317609 CGACCACGTTGAAGCCCAG 61.318 63.158 0.00 0.00 34.56 4.45
1530 1568 1.478510 CACTTACAGGCAGAGTCGGAT 59.521 52.381 0.00 0.00 0.00 4.18
1570 1608 3.756434 TCCAACATTCATCCGAACCTTTC 59.244 43.478 0.00 0.00 32.81 2.62
1597 1635 5.739959 GAGCTTCAGGTCTAGGAAAAGAAT 58.260 41.667 0.00 0.00 39.31 2.40
1609 1647 4.141981 TGAGATGAATGAGAGCTTCAGGTC 60.142 45.833 0.00 0.00 39.68 3.85
1612 1650 5.849510 AGATGAGATGAATGAGAGCTTCAG 58.150 41.667 0.00 0.00 39.68 3.02
1649 1689 2.308722 TGGGAACAGGGGAGATGGC 61.309 63.158 0.00 0.00 35.01 4.40
1685 1725 2.123428 CCCATGCTTAGCCCTGTGC 61.123 63.158 0.29 0.00 41.71 4.57
1703 1743 1.063951 CGTACGTTGAGGTGTCGCTC 61.064 60.000 7.22 0.00 0.00 5.03
1727 1767 2.420022 GCTACGTACGTACCTTCCTTCA 59.580 50.000 23.60 1.97 0.00 3.02
1740 1780 6.026513 AGTAGAACGAATTCAAGCTACGTAC 58.973 40.000 16.44 0.00 37.29 3.67
1757 1797 7.870588 ATGACGTTTTCTGAACTAGTAGAAC 57.129 36.000 7.47 0.00 33.01 3.01
1831 1871 1.327690 TGAACCTAAGCTCCCGCGAT 61.328 55.000 8.23 0.00 42.32 4.58
1835 1875 0.815615 GGCATGAACCTAAGCTCCCG 60.816 60.000 0.00 0.00 0.00 5.14
1915 1955 1.691434 GTCATCCTCCAGATCTCACCC 59.309 57.143 0.00 0.00 30.59 4.61
1954 1994 3.715854 CCGTCCAGGTAAGTCGAAG 57.284 57.895 0.00 0.00 34.51 3.79
1982 2022 0.533491 AAATGGCATGAGCGTTGCAT 59.467 45.000 0.00 0.00 41.95 3.96
1988 2028 1.268896 GGACATCAAATGGCATGAGCG 60.269 52.381 0.00 0.00 41.20 5.03
1992 2032 2.480073 GGAACGGACATCAAATGGCATG 60.480 50.000 0.00 0.00 41.20 4.06
1994 2034 1.173043 GGAACGGACATCAAATGGCA 58.827 50.000 0.00 0.00 41.20 4.92
1995 2035 1.133025 CTGGAACGGACATCAAATGGC 59.867 52.381 0.00 0.00 36.31 4.40
1996 2036 2.436417 ACTGGAACGGACATCAAATGG 58.564 47.619 0.00 0.00 38.67 3.16
2006 2046 4.994852 CAGTTAATGAGAAACTGGAACGGA 59.005 41.667 7.86 0.00 46.52 4.69
2023 2071 9.734620 GCATGATAACATAAGCATTTCAGTTAA 57.265 29.630 0.00 0.00 35.09 2.01
2026 2074 7.067859 ACAGCATGATAACATAAGCATTTCAGT 59.932 33.333 0.00 0.00 39.69 3.41
2049 2097 3.535561 ACTCGCCATCCTGAATTAACAG 58.464 45.455 0.00 0.00 37.61 3.16
2050 2098 3.627395 ACTCGCCATCCTGAATTAACA 57.373 42.857 0.00 0.00 0.00 2.41
2086 2134 2.036862 AGAAACGGAGGGAGTACAACAC 59.963 50.000 0.00 0.00 0.00 3.32
2091 2139 5.545588 ACTAAAAAGAAACGGAGGGAGTAC 58.454 41.667 0.00 0.00 0.00 2.73
2092 2140 5.279657 GGACTAAAAAGAAACGGAGGGAGTA 60.280 44.000 0.00 0.00 0.00 2.59
2093 2141 4.504514 GGACTAAAAAGAAACGGAGGGAGT 60.505 45.833 0.00 0.00 0.00 3.85
2094 2142 4.001652 GGACTAAAAAGAAACGGAGGGAG 58.998 47.826 0.00 0.00 0.00 4.30
2095 2143 3.555586 CGGACTAAAAAGAAACGGAGGGA 60.556 47.826 0.00 0.00 0.00 4.20
2096 2144 2.740447 CGGACTAAAAAGAAACGGAGGG 59.260 50.000 0.00 0.00 0.00 4.30
2097 2145 2.159037 GCGGACTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30
2098 2146 2.803956 TGCGGACTAAAAAGAAACGGAG 59.196 45.455 0.00 0.00 0.00 4.63
2099 2147 2.836262 TGCGGACTAAAAAGAAACGGA 58.164 42.857 0.00 0.00 0.00 4.69
2100 2148 3.824414 ATGCGGACTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
2101 2149 7.123830 CCTTATATGCGGACTAAAAAGAAACG 58.876 38.462 0.00 0.00 0.00 3.60
2102 2150 7.982224 ACCTTATATGCGGACTAAAAAGAAAC 58.018 34.615 0.00 0.00 0.00 2.78
2103 2151 8.570068 AACCTTATATGCGGACTAAAAAGAAA 57.430 30.769 0.00 0.00 0.00 2.52
2104 2152 8.455682 CAAACCTTATATGCGGACTAAAAAGAA 58.544 33.333 0.00 0.00 0.00 2.52
2105 2153 7.066525 CCAAACCTTATATGCGGACTAAAAAGA 59.933 37.037 0.00 0.00 0.00 2.52
2106 2154 7.148137 ACCAAACCTTATATGCGGACTAAAAAG 60.148 37.037 0.00 0.00 0.00 2.27
2107 2155 6.660094 ACCAAACCTTATATGCGGACTAAAAA 59.340 34.615 0.00 0.00 0.00 1.94
2108 2156 6.181908 ACCAAACCTTATATGCGGACTAAAA 58.818 36.000 0.00 0.00 0.00 1.52
2109 2157 5.747342 ACCAAACCTTATATGCGGACTAAA 58.253 37.500 0.00 0.00 0.00 1.85
2110 2158 5.104859 TGACCAAACCTTATATGCGGACTAA 60.105 40.000 0.00 0.00 0.00 2.24
2111 2159 4.406326 TGACCAAACCTTATATGCGGACTA 59.594 41.667 0.00 0.00 0.00 2.59
2112 2160 3.199071 TGACCAAACCTTATATGCGGACT 59.801 43.478 0.00 0.00 0.00 3.85
2113 2161 3.537580 TGACCAAACCTTATATGCGGAC 58.462 45.455 0.00 0.00 0.00 4.79
2114 2162 3.916359 TGACCAAACCTTATATGCGGA 57.084 42.857 0.00 0.00 0.00 5.54
2115 2163 4.398044 ACTTTGACCAAACCTTATATGCGG 59.602 41.667 0.00 0.00 0.00 5.69
2116 2164 5.123186 TGACTTTGACCAAACCTTATATGCG 59.877 40.000 0.00 0.00 0.00 4.73
2117 2165 6.509418 TGACTTTGACCAAACCTTATATGC 57.491 37.500 0.00 0.00 0.00 3.14
2118 2166 7.029563 GCTTGACTTTGACCAAACCTTATATG 58.970 38.462 0.00 0.00 0.00 1.78
2119 2167 6.948309 AGCTTGACTTTGACCAAACCTTATAT 59.052 34.615 0.00 0.00 0.00 0.86
2120 2168 6.303839 AGCTTGACTTTGACCAAACCTTATA 58.696 36.000 0.00 0.00 0.00 0.98
2121 2169 5.140454 AGCTTGACTTTGACCAAACCTTAT 58.860 37.500 0.00 0.00 0.00 1.73
2122 2170 4.532834 AGCTTGACTTTGACCAAACCTTA 58.467 39.130 0.00 0.00 0.00 2.69
2123 2171 3.365472 AGCTTGACTTTGACCAAACCTT 58.635 40.909 0.00 0.00 0.00 3.50
2124 2172 3.018423 AGCTTGACTTTGACCAAACCT 57.982 42.857 0.00 0.00 0.00 3.50
2125 2173 3.801114 AAGCTTGACTTTGACCAAACC 57.199 42.857 0.00 0.00 33.71 3.27
2135 2183 6.116126 ACTCAAACTCTACAAAGCTTGACTT 58.884 36.000 0.00 0.00 41.70 3.01
2136 2184 5.675538 ACTCAAACTCTACAAAGCTTGACT 58.324 37.500 0.00 0.00 0.00 3.41
2137 2185 5.993106 ACTCAAACTCTACAAAGCTTGAC 57.007 39.130 0.00 0.00 0.00 3.18
2138 2186 7.272978 AGTTACTCAAACTCTACAAAGCTTGA 58.727 34.615 0.00 0.00 45.64 3.02
2139 2187 7.484035 AGTTACTCAAACTCTACAAAGCTTG 57.516 36.000 0.00 0.00 45.64 4.01
2189 2237 9.926751 GCATCTGGTAATATTGATTTCATATCG 57.073 33.333 0.00 0.00 0.00 2.92
2192 2240 9.013229 GGTGCATCTGGTAATATTGATTTCATA 57.987 33.333 0.00 0.00 0.00 2.15
2193 2241 7.506599 TGGTGCATCTGGTAATATTGATTTCAT 59.493 33.333 0.00 0.00 0.00 2.57
2194 2242 6.832900 TGGTGCATCTGGTAATATTGATTTCA 59.167 34.615 0.00 0.00 0.00 2.69
2195 2243 7.275888 TGGTGCATCTGGTAATATTGATTTC 57.724 36.000 0.00 0.00 0.00 2.17
2196 2244 7.506599 TCATGGTGCATCTGGTAATATTGATTT 59.493 33.333 0.00 0.00 0.00 2.17
2197 2245 7.005902 TCATGGTGCATCTGGTAATATTGATT 58.994 34.615 0.00 0.00 0.00 2.57
2198 2246 6.545567 TCATGGTGCATCTGGTAATATTGAT 58.454 36.000 0.00 0.00 0.00 2.57
2199 2247 5.939447 TCATGGTGCATCTGGTAATATTGA 58.061 37.500 0.00 0.00 0.00 2.57
2200 2248 6.638096 TTCATGGTGCATCTGGTAATATTG 57.362 37.500 0.00 0.00 0.00 1.90
2201 2249 6.606796 TGTTTCATGGTGCATCTGGTAATATT 59.393 34.615 0.00 0.00 0.00 1.28
2202 2250 6.128486 TGTTTCATGGTGCATCTGGTAATAT 58.872 36.000 0.00 0.00 0.00 1.28
2203 2251 5.504853 TGTTTCATGGTGCATCTGGTAATA 58.495 37.500 0.00 0.00 0.00 0.98
2204 2252 4.343231 TGTTTCATGGTGCATCTGGTAAT 58.657 39.130 0.00 0.00 0.00 1.89
2205 2253 3.760738 TGTTTCATGGTGCATCTGGTAA 58.239 40.909 0.00 0.00 0.00 2.85
2206 2254 3.431673 TGTTTCATGGTGCATCTGGTA 57.568 42.857 0.00 0.00 0.00 3.25
2207 2255 2.291209 TGTTTCATGGTGCATCTGGT 57.709 45.000 0.00 0.00 0.00 4.00
2208 2256 5.524971 AATATGTTTCATGGTGCATCTGG 57.475 39.130 0.00 0.00 0.00 3.86
2209 2257 7.036829 TGAAAATATGTTTCATGGTGCATCTG 58.963 34.615 0.00 0.00 33.90 2.90
2210 2258 7.172868 TGAAAATATGTTTCATGGTGCATCT 57.827 32.000 0.00 0.00 33.90 2.90
2211 2259 9.701098 ATATGAAAATATGTTTCATGGTGCATC 57.299 29.630 22.55 0.00 45.55 3.91
2320 2368 9.342308 CCTCCATTTCTTTTTACTCTGCATATA 57.658 33.333 0.00 0.00 0.00 0.86
2321 2369 8.055181 TCCTCCATTTCTTTTTACTCTGCATAT 58.945 33.333 0.00 0.00 0.00 1.78
2322 2370 7.402054 TCCTCCATTTCTTTTTACTCTGCATA 58.598 34.615 0.00 0.00 0.00 3.14
2323 2371 6.248433 TCCTCCATTTCTTTTTACTCTGCAT 58.752 36.000 0.00 0.00 0.00 3.96
2324 2372 5.630121 TCCTCCATTTCTTTTTACTCTGCA 58.370 37.500 0.00 0.00 0.00 4.41
2325 2373 6.207614 ACTTCCTCCATTTCTTTTTACTCTGC 59.792 38.462 0.00 0.00 0.00 4.26
2326 2374 7.751768 ACTTCCTCCATTTCTTTTTACTCTG 57.248 36.000 0.00 0.00 0.00 3.35
2327 2375 7.603024 CGTACTTCCTCCATTTCTTTTTACTCT 59.397 37.037 0.00 0.00 0.00 3.24
2328 2376 7.387122 ACGTACTTCCTCCATTTCTTTTTACTC 59.613 37.037 0.00 0.00 0.00 2.59
2329 2377 7.172703 CACGTACTTCCTCCATTTCTTTTTACT 59.827 37.037 0.00 0.00 0.00 2.24
2330 2378 7.295930 CACGTACTTCCTCCATTTCTTTTTAC 58.704 38.462 0.00 0.00 0.00 2.01
2331 2379 6.072893 GCACGTACTTCCTCCATTTCTTTTTA 60.073 38.462 0.00 0.00 0.00 1.52
2332 2380 5.278315 GCACGTACTTCCTCCATTTCTTTTT 60.278 40.000 0.00 0.00 0.00 1.94
2333 2381 4.215613 GCACGTACTTCCTCCATTTCTTTT 59.784 41.667 0.00 0.00 0.00 2.27
2334 2382 3.751698 GCACGTACTTCCTCCATTTCTTT 59.248 43.478 0.00 0.00 0.00 2.52
2335 2383 3.008049 AGCACGTACTTCCTCCATTTCTT 59.992 43.478 0.00 0.00 0.00 2.52
2336 2384 2.567615 AGCACGTACTTCCTCCATTTCT 59.432 45.455 0.00 0.00 0.00 2.52
2337 2385 2.973945 AGCACGTACTTCCTCCATTTC 58.026 47.619 0.00 0.00 0.00 2.17
2338 2386 3.074412 CAAGCACGTACTTCCTCCATTT 58.926 45.455 0.00 0.00 0.00 2.32
2339 2387 2.699954 CAAGCACGTACTTCCTCCATT 58.300 47.619 0.00 0.00 0.00 3.16
2340 2388 1.676014 GCAAGCACGTACTTCCTCCAT 60.676 52.381 0.00 0.00 0.00 3.41
2341 2389 0.320421 GCAAGCACGTACTTCCTCCA 60.320 55.000 0.00 0.00 0.00 3.86
2342 2390 1.019805 GGCAAGCACGTACTTCCTCC 61.020 60.000 0.00 0.00 0.00 4.30
2343 2391 0.320421 TGGCAAGCACGTACTTCCTC 60.320 55.000 14.28 3.26 0.00 3.71
2344 2392 0.320771 CTGGCAAGCACGTACTTCCT 60.321 55.000 14.28 0.00 0.00 3.36
2345 2393 0.320421 TCTGGCAAGCACGTACTTCC 60.320 55.000 0.00 4.32 0.00 3.46
2346 2394 1.071605 CTCTGGCAAGCACGTACTTC 58.928 55.000 0.00 0.00 0.00 3.01
2347 2395 0.679505 TCTCTGGCAAGCACGTACTT 59.320 50.000 0.00 0.00 0.00 2.24
2348 2396 0.038159 GTCTCTGGCAAGCACGTACT 60.038 55.000 0.00 0.00 0.00 2.73
2358 2406 2.583441 CCCGTCCTTGTCTCTGGCA 61.583 63.158 0.00 0.00 0.00 4.92
2363 2411 2.579738 GGAGCCCGTCCTTGTCTC 59.420 66.667 0.00 0.00 42.99 3.36
2410 2458 1.339151 GGACTCGAACAGGCTTCCATT 60.339 52.381 0.00 0.00 0.00 3.16
2438 2486 1.269778 GGTGTGCTTCTTTCCTTTGCC 60.270 52.381 0.00 0.00 0.00 4.52
2440 2488 2.951642 TCTGGTGTGCTTCTTTCCTTTG 59.048 45.455 0.00 0.00 0.00 2.77
2448 2496 4.689612 TTACTTCTTCTGGTGTGCTTCT 57.310 40.909 0.00 0.00 0.00 2.85
2455 2503 4.216257 CCCATGTGTTTACTTCTTCTGGTG 59.784 45.833 0.00 0.00 0.00 4.17
2472 2520 1.774894 AAGTACGCACACCCCCATGT 61.775 55.000 0.00 0.00 0.00 3.21
2473 2521 0.608035 AAAGTACGCACACCCCCATG 60.608 55.000 0.00 0.00 0.00 3.66
2474 2522 0.608035 CAAAGTACGCACACCCCCAT 60.608 55.000 0.00 0.00 0.00 4.00
2475 2523 1.228003 CAAAGTACGCACACCCCCA 60.228 57.895 0.00 0.00 0.00 4.96
2479 2527 2.412325 GCATACACAAAGTACGCACACC 60.412 50.000 0.00 0.00 41.35 4.16
2480 2528 2.412325 GGCATACACAAAGTACGCACAC 60.412 50.000 0.00 0.00 43.39 3.82
2481 2529 1.801771 GGCATACACAAAGTACGCACA 59.198 47.619 0.00 0.00 43.39 4.57
2484 2535 5.981315 TCTATAAGGCATACACAAAGTACGC 59.019 40.000 0.00 0.00 41.00 4.42
2515 2566 0.393808 GAGGGTGGCGCCTTTGATTA 60.394 55.000 29.70 1.01 37.43 1.75
2516 2567 1.678970 GAGGGTGGCGCCTTTGATT 60.679 57.895 29.70 8.27 37.43 2.57
2517 2568 2.044946 GAGGGTGGCGCCTTTGAT 60.045 61.111 29.70 9.88 37.43 2.57
2518 2569 3.249189 AGAGGGTGGCGCCTTTGA 61.249 61.111 29.70 3.37 37.43 2.69
2519 2570 2.747855 GAGAGGGTGGCGCCTTTG 60.748 66.667 29.70 0.00 37.43 2.77
2520 2571 4.035102 GGAGAGGGTGGCGCCTTT 62.035 66.667 29.70 10.27 37.43 3.11
2597 2648 3.735029 GAGCGGTCAGACGACGGT 61.735 66.667 10.30 3.90 43.61 4.83
2867 2925 0.801251 GATGCGCCTCATTATCCAGC 59.199 55.000 4.18 0.00 35.05 4.85
3148 3207 0.037326 GGATAGGATCGCGGCAATCA 60.037 55.000 6.13 0.00 0.00 2.57
3241 3301 1.065600 CTCTACTGCAGGCGAGCTC 59.934 63.158 19.93 2.73 34.99 4.09
3294 3357 2.660802 GCGAAGGGAAACGGAGGA 59.339 61.111 0.00 0.00 0.00 3.71
3364 3427 1.745489 GTAGCTGTTCCTTGGGCGG 60.745 63.158 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.