Multiple sequence alignment - TraesCS2B01G402000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G402000 chr2B 100.000 4201 0 0 1 4201 570881791 570885991 0.000000e+00 7758
1 TraesCS2B01G402000 chr2D 88.789 2444 180 46 2 2385 485845628 485848037 0.000000e+00 2909
2 TraesCS2B01G402000 chr2D 88.575 744 63 11 2648 3381 485848206 485848937 0.000000e+00 883
3 TraesCS2B01G402000 chr2D 87.766 188 23 0 4013 4200 485850031 485850218 1.970000e-53 220
4 TraesCS2B01G402000 chr2A 95.962 1065 39 3 1 1062 631522824 631523887 0.000000e+00 1725
5 TraesCS2B01G402000 chr2A 90.155 711 36 18 1521 2225 631524495 631525177 0.000000e+00 894
6 TraesCS2B01G402000 chr2A 90.863 394 25 6 1129 1516 631524010 631524398 6.230000e-143 518
7 TraesCS2B01G402000 chr2A 86.313 453 54 7 3752 4200 631526616 631527064 1.760000e-133 486
8 TraesCS2B01G402000 chr2A 87.853 354 31 8 2974 3316 631525955 631526307 5.060000e-109 405
9 TraesCS2B01G402000 chr2A 88.268 179 17 4 2301 2477 631525267 631525443 1.180000e-50 211
10 TraesCS2B01G402000 chr2A 79.021 286 42 10 2621 2897 631525471 631525747 3.340000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G402000 chr2B 570881791 570885991 4200 False 7758.000000 7758 100.000000 1 4201 1 chr2B.!!$F1 4200
1 TraesCS2B01G402000 chr2D 485845628 485850218 4590 False 1337.333333 2909 88.376667 2 4200 3 chr2D.!!$F1 4198
2 TraesCS2B01G402000 chr2A 631522824 631527064 4240 False 631.285714 1725 88.347857 1 4200 7 chr2A.!!$F1 4199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
724 728 1.180029 CAGTGGGAGAAAAGCATGGG 58.820 55.0 0.0 0.0 0.0 4.00 F
2234 2431 0.178068 TCAAGGTTAGCTCCATCGGC 59.822 55.0 0.0 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2288 2485 0.179121 GTCCACGGACACGCATGATA 60.179 55.0 11.43 0.0 46.04 2.15 R
3993 5029 0.031616 AGCCACCCCCAAAACTTGAA 60.032 50.0 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 149 2.123726 GCGGCAGGGGGATCAATT 60.124 61.111 0.00 0.00 0.00 2.32
208 209 7.639113 TGTTTACAACAAGGAAGTTCTGAAT 57.361 32.000 2.25 0.00 38.72 2.57
223 224 6.644347 AGTTCTGAATGGATGTAACGAAGAT 58.356 36.000 0.00 0.00 0.00 2.40
226 227 4.769688 TGAATGGATGTAACGAAGATGCT 58.230 39.130 0.00 0.00 0.00 3.79
295 297 1.617850 CAACATTTGGCTGCAGGGTTA 59.382 47.619 17.12 0.00 0.00 2.85
345 347 1.612726 GCATCCTGCACTCTTCAACCT 60.613 52.381 0.00 0.00 44.26 3.50
483 485 3.135712 TCACACTCTTACCTTTCTTGCCA 59.864 43.478 0.00 0.00 0.00 4.92
517 519 4.460948 TCTTATGTTTCACCTACCGACC 57.539 45.455 0.00 0.00 0.00 4.79
538 540 1.670406 GACTGGTGCAGCTGGTCTG 60.670 63.158 24.00 7.63 45.62 3.51
633 637 5.703592 GGGCCGATTTTAAACTGGAAATTTT 59.296 36.000 0.00 0.00 0.00 1.82
638 642 8.001549 CCGATTTTAAACTGGAAATTTTGTTCG 58.998 33.333 0.00 0.00 0.00 3.95
724 728 1.180029 CAGTGGGAGAAAAGCATGGG 58.820 55.000 0.00 0.00 0.00 4.00
739 743 2.684630 GCATGGGATGATTGTGGAGTGA 60.685 50.000 0.00 0.00 0.00 3.41
972 977 1.423921 AGGGCCATTATAAAGGGACGG 59.576 52.381 6.18 0.00 0.00 4.79
1078 1091 2.170187 AGGTGCTAGCTCATCTTTCCAG 59.830 50.000 17.23 0.00 0.00 3.86
1083 1096 1.731720 AGCTCATCTTTCCAGTTCGC 58.268 50.000 0.00 0.00 0.00 4.70
1089 1102 3.125146 TCATCTTTCCAGTTCGCATTTCG 59.875 43.478 0.00 0.00 40.15 3.46
1109 1122 2.484889 GTTCCGACTGAAGCAGAGTTT 58.515 47.619 0.82 0.00 35.18 2.66
1110 1123 2.154854 TCCGACTGAAGCAGAGTTTG 57.845 50.000 0.82 0.00 35.18 2.93
1111 1124 1.686587 TCCGACTGAAGCAGAGTTTGA 59.313 47.619 0.82 0.00 35.18 2.69
1112 1125 1.795286 CCGACTGAAGCAGAGTTTGAC 59.205 52.381 0.82 0.00 35.18 3.18
1114 1127 3.126831 CGACTGAAGCAGAGTTTGACTT 58.873 45.455 0.82 0.00 35.18 3.01
1115 1128 3.060003 CGACTGAAGCAGAGTTTGACTTG 60.060 47.826 0.82 0.00 35.18 3.16
1116 1129 4.122776 GACTGAAGCAGAGTTTGACTTGA 58.877 43.478 0.82 0.00 35.18 3.02
1140 1209 2.094390 TCTTTTGCTCATGCTTGGATGC 60.094 45.455 0.00 3.50 40.48 3.91
1148 1217 0.970937 ATGCTTGGATGCTTGCAGCT 60.971 50.000 10.67 0.00 42.97 4.24
1150 1219 1.313812 GCTTGGATGCTTGCAGCTCT 61.314 55.000 10.67 0.00 42.97 4.09
1189 1258 2.135933 GACCACACCTTCTTCGAGTTG 58.864 52.381 0.00 0.00 0.00 3.16
1220 1289 3.494626 GCGATACCATGTACAGGTGAATG 59.505 47.826 20.68 6.17 40.26 2.67
1221 1290 4.739436 GCGATACCATGTACAGGTGAATGA 60.739 45.833 20.68 6.75 40.26 2.57
1222 1291 5.541845 CGATACCATGTACAGGTGAATGAT 58.458 41.667 20.68 10.20 40.26 2.45
1223 1292 5.635280 CGATACCATGTACAGGTGAATGATC 59.365 44.000 20.68 15.29 40.26 2.92
1224 1293 4.156455 ACCATGTACAGGTGAATGATCC 57.844 45.455 14.00 0.00 38.13 3.36
1226 1295 3.117926 CCATGTACAGGTGAATGATCCCA 60.118 47.826 6.79 0.00 0.00 4.37
1227 1296 4.446745 CCATGTACAGGTGAATGATCCCAT 60.447 45.833 6.79 0.00 33.66 4.00
1228 1297 4.422073 TGTACAGGTGAATGATCCCATC 57.578 45.455 0.00 0.00 31.40 3.51
1230 1299 4.474651 TGTACAGGTGAATGATCCCATCTT 59.525 41.667 0.00 0.00 31.40 2.40
1231 1300 4.162040 ACAGGTGAATGATCCCATCTTC 57.838 45.455 0.00 0.00 31.40 2.87
1232 1301 3.136763 CAGGTGAATGATCCCATCTTCG 58.863 50.000 0.00 0.00 31.40 3.79
1233 1302 3.041211 AGGTGAATGATCCCATCTTCGA 58.959 45.455 0.00 0.00 31.40 3.71
1235 1304 4.103785 AGGTGAATGATCCCATCTTCGAAT 59.896 41.667 0.00 0.00 31.40 3.34
1236 1305 4.453819 GGTGAATGATCCCATCTTCGAATC 59.546 45.833 0.00 0.00 31.40 2.52
1237 1306 5.059161 GTGAATGATCCCATCTTCGAATCA 58.941 41.667 0.00 0.00 31.40 2.57
1238 1307 5.178996 GTGAATGATCCCATCTTCGAATCAG 59.821 44.000 0.00 0.00 31.40 2.90
1239 1308 3.117491 TGATCCCATCTTCGAATCAGC 57.883 47.619 0.00 0.00 0.00 4.26
1282 1356 0.319900 GTCAGCGGTGCTCTCAGAAA 60.320 55.000 10.38 0.00 36.40 2.52
1297 1371 0.610174 AGAAACTGCCAGCTGATCGA 59.390 50.000 17.39 0.00 0.00 3.59
1301 1375 0.538584 ACTGCCAGCTGATCGAATGA 59.461 50.000 17.39 0.00 0.00 2.57
1303 1377 1.329906 CTGCCAGCTGATCGAATGAAC 59.670 52.381 17.39 0.00 0.00 3.18
1304 1378 1.065926 TGCCAGCTGATCGAATGAACT 60.066 47.619 17.39 0.00 0.00 3.01
1305 1379 2.168313 TGCCAGCTGATCGAATGAACTA 59.832 45.455 17.39 0.00 0.00 2.24
1419 1494 2.031163 GTTCACGCTGCAGGAGGT 59.969 61.111 17.12 0.00 0.00 3.85
1460 1535 4.271816 CGGAGATCGTGGAGCCGG 62.272 72.222 0.00 0.00 38.40 6.13
1464 1539 4.899239 GATCGTGGAGCCGGCCAG 62.899 72.222 26.15 10.46 38.95 4.85
1468 1543 4.154347 GTGGAGCCGGCCAGAGAG 62.154 72.222 26.15 0.00 38.95 3.20
1477 1552 3.075005 GCCAGAGAGGGGTACGCA 61.075 66.667 12.45 0.00 46.88 5.24
1507 1582 1.448717 GCTCAACTTCTCCGGCCTC 60.449 63.158 0.00 0.00 0.00 4.70
1511 1586 1.841556 AACTTCTCCGGCCTCACCA 60.842 57.895 0.00 0.00 39.03 4.17
1562 1729 3.927548 TGTCGCTGCTGCAGTCCA 61.928 61.111 28.50 19.45 39.64 4.02
1663 1830 0.832135 ACCCCTTCTTCGTCAGCAGA 60.832 55.000 0.00 0.00 0.00 4.26
1685 1852 1.992170 GGTACGCCACTACTGTCTTG 58.008 55.000 0.00 0.00 34.09 3.02
1686 1853 1.347320 GTACGCCACTACTGTCTTGC 58.653 55.000 0.00 0.00 0.00 4.01
1687 1854 1.067776 GTACGCCACTACTGTCTTGCT 60.068 52.381 0.00 0.00 0.00 3.91
1688 1855 0.393077 ACGCCACTACTGTCTTGCTT 59.607 50.000 0.00 0.00 0.00 3.91
1689 1856 0.792640 CGCCACTACTGTCTTGCTTG 59.207 55.000 0.00 0.00 0.00 4.01
1690 1857 0.519077 GCCACTACTGTCTTGCTTGC 59.481 55.000 0.00 0.00 0.00 4.01
1728 1895 6.831769 ACGAAGTTCAATTGTAGTGCTAATG 58.168 36.000 5.13 0.00 37.78 1.90
1731 1898 4.094887 AGTTCAATTGTAGTGCTAATGGCG 59.905 41.667 5.13 0.00 45.43 5.69
1732 1899 3.605634 TCAATTGTAGTGCTAATGGCGT 58.394 40.909 5.13 0.00 45.43 5.68
1733 1900 3.373748 TCAATTGTAGTGCTAATGGCGTG 59.626 43.478 5.13 0.00 45.43 5.34
1734 1901 1.732941 TTGTAGTGCTAATGGCGTGG 58.267 50.000 0.00 0.00 45.43 4.94
1735 1902 0.742990 TGTAGTGCTAATGGCGTGGC 60.743 55.000 0.00 0.00 45.43 5.01
1736 1903 0.462047 GTAGTGCTAATGGCGTGGCT 60.462 55.000 6.51 0.00 45.43 4.75
1737 1904 0.179084 TAGTGCTAATGGCGTGGCTC 60.179 55.000 6.51 3.54 45.43 4.70
1738 1905 1.450312 GTGCTAATGGCGTGGCTCT 60.450 57.895 6.51 0.00 45.43 4.09
1740 1907 1.026182 TGCTAATGGCGTGGCTCTTG 61.026 55.000 6.51 0.00 45.43 3.02
1742 1909 1.718757 CTAATGGCGTGGCTCTTGGC 61.719 60.000 0.00 0.00 40.90 4.52
1836 2011 1.763770 CTTCTTCCAGGTGGGTGCT 59.236 57.895 0.00 0.00 38.11 4.40
1849 2028 2.740055 GTGCTCGACACCAGCCAG 60.740 66.667 6.82 0.00 44.02 4.85
1885 2065 1.471829 CCCACCCACCTGCTTTTTCC 61.472 60.000 0.00 0.00 0.00 3.13
1886 2066 1.471829 CCACCCACCTGCTTTTTCCC 61.472 60.000 0.00 0.00 0.00 3.97
1892 2072 2.650778 CTGCTTTTTCCCGTGCCC 59.349 61.111 0.00 0.00 0.00 5.36
1893 2073 2.915137 TGCTTTTTCCCGTGCCCC 60.915 61.111 0.00 0.00 0.00 5.80
1894 2074 2.600470 GCTTTTTCCCGTGCCCCT 60.600 61.111 0.00 0.00 0.00 4.79
1895 2075 1.303806 GCTTTTTCCCGTGCCCCTA 60.304 57.895 0.00 0.00 0.00 3.53
1916 2113 2.957060 CCTGAGTGAGGTGTACGGA 58.043 57.895 0.00 0.00 37.02 4.69
2068 2265 1.373748 TACGTTGCGTTGCTCCCTC 60.374 57.895 0.00 0.00 41.54 4.30
2069 2266 1.812686 TACGTTGCGTTGCTCCCTCT 61.813 55.000 0.00 0.00 41.54 3.69
2070 2267 1.961277 CGTTGCGTTGCTCCCTCTT 60.961 57.895 0.00 0.00 0.00 2.85
2071 2268 1.576421 GTTGCGTTGCTCCCTCTTG 59.424 57.895 0.00 0.00 0.00 3.02
2072 2269 1.148273 TTGCGTTGCTCCCTCTTGT 59.852 52.632 0.00 0.00 0.00 3.16
2097 2294 0.670854 GTCGCCTGGAGTTGGAGTTC 60.671 60.000 0.00 0.00 0.00 3.01
2115 2312 0.678684 TCTCCGACGTGCTGGATGTA 60.679 55.000 0.00 0.00 32.83 2.29
2116 2313 0.385751 CTCCGACGTGCTGGATGTAT 59.614 55.000 0.00 0.00 32.83 2.29
2117 2314 1.607148 CTCCGACGTGCTGGATGTATA 59.393 52.381 0.00 0.00 32.83 1.47
2118 2315 2.229062 CTCCGACGTGCTGGATGTATAT 59.771 50.000 0.00 0.00 32.83 0.86
2119 2316 2.030274 TCCGACGTGCTGGATGTATATG 60.030 50.000 0.00 0.00 0.00 1.78
2120 2317 2.030274 CCGACGTGCTGGATGTATATGA 60.030 50.000 0.00 0.00 0.00 2.15
2121 2318 3.367395 CCGACGTGCTGGATGTATATGAT 60.367 47.826 0.00 0.00 0.00 2.45
2122 2319 4.237724 CGACGTGCTGGATGTATATGATT 58.762 43.478 0.00 0.00 0.00 2.57
2225 2422 4.392138 GTCAAGTACCACATCAAGGTTAGC 59.608 45.833 0.00 0.00 40.54 3.09
2227 2424 4.473477 AGTACCACATCAAGGTTAGCTC 57.527 45.455 0.00 0.00 40.54 4.09
2228 2425 2.789409 ACCACATCAAGGTTAGCTCC 57.211 50.000 0.00 0.00 35.33 4.70
2229 2426 1.985159 ACCACATCAAGGTTAGCTCCA 59.015 47.619 0.00 0.00 35.33 3.86
2233 2430 2.158900 ACATCAAGGTTAGCTCCATCGG 60.159 50.000 0.00 0.00 0.00 4.18
2234 2431 0.178068 TCAAGGTTAGCTCCATCGGC 59.822 55.000 0.00 0.00 0.00 5.54
2235 2432 0.179000 CAAGGTTAGCTCCATCGGCT 59.821 55.000 0.00 0.00 43.02 5.52
2236 2433 0.466124 AAGGTTAGCTCCATCGGCTC 59.534 55.000 0.00 0.00 40.74 4.70
2237 2434 1.069935 GGTTAGCTCCATCGGCTCC 59.930 63.158 0.00 0.00 40.74 4.70
2238 2435 1.069935 GTTAGCTCCATCGGCTCCC 59.930 63.158 0.00 0.00 40.74 4.30
2239 2436 1.382557 TTAGCTCCATCGGCTCCCA 60.383 57.895 0.00 0.00 40.74 4.37
2240 2437 0.980754 TTAGCTCCATCGGCTCCCAA 60.981 55.000 0.00 0.00 40.74 4.12
2241 2438 0.764369 TAGCTCCATCGGCTCCCAAT 60.764 55.000 0.00 0.00 40.74 3.16
2242 2439 1.152881 GCTCCATCGGCTCCCAATT 60.153 57.895 0.00 0.00 0.00 2.32
2243 2440 0.753111 GCTCCATCGGCTCCCAATTT 60.753 55.000 0.00 0.00 0.00 1.82
2244 2441 1.767759 CTCCATCGGCTCCCAATTTT 58.232 50.000 0.00 0.00 0.00 1.82
2245 2442 1.406539 CTCCATCGGCTCCCAATTTTG 59.593 52.381 0.00 0.00 0.00 2.44
2246 2443 1.185315 CCATCGGCTCCCAATTTTGT 58.815 50.000 0.00 0.00 0.00 2.83
2247 2444 1.550072 CCATCGGCTCCCAATTTTGTT 59.450 47.619 0.00 0.00 0.00 2.83
2248 2445 2.028203 CCATCGGCTCCCAATTTTGTTT 60.028 45.455 0.00 0.00 0.00 2.83
2249 2446 3.556843 CCATCGGCTCCCAATTTTGTTTT 60.557 43.478 0.00 0.00 0.00 2.43
2250 2447 3.828875 TCGGCTCCCAATTTTGTTTTT 57.171 38.095 0.00 0.00 0.00 1.94
2251 2448 3.462021 TCGGCTCCCAATTTTGTTTTTG 58.538 40.909 0.00 0.00 0.00 2.44
2252 2449 3.133003 TCGGCTCCCAATTTTGTTTTTGA 59.867 39.130 0.00 0.00 0.00 2.69
2253 2450 3.873952 CGGCTCCCAATTTTGTTTTTGAA 59.126 39.130 0.00 0.00 0.00 2.69
2254 2451 4.333926 CGGCTCCCAATTTTGTTTTTGAAA 59.666 37.500 0.00 0.00 0.00 2.69
2255 2452 5.503846 CGGCTCCCAATTTTGTTTTTGAAAG 60.504 40.000 0.00 0.00 0.00 2.62
2256 2453 5.356751 GGCTCCCAATTTTGTTTTTGAAAGT 59.643 36.000 0.00 0.00 0.00 2.66
2257 2454 6.540551 GGCTCCCAATTTTGTTTTTGAAAGTA 59.459 34.615 0.00 0.00 0.00 2.24
2258 2455 7.254761 GGCTCCCAATTTTGTTTTTGAAAGTAG 60.255 37.037 0.00 0.00 0.00 2.57
2259 2456 7.546778 TCCCAATTTTGTTTTTGAAAGTAGC 57.453 32.000 0.00 0.00 0.00 3.58
2264 2461 7.679659 ATTTTGTTTTTGAAAGTAGCTCGAC 57.320 32.000 0.00 0.00 0.00 4.20
2276 2473 2.995574 CTCGACCGGGTCCCAGTT 60.996 66.667 21.06 0.00 0.00 3.16
2294 2491 4.897224 CAGTTAACGCTGGTTGTATCATG 58.103 43.478 0.00 0.00 36.90 3.07
2297 2494 2.383170 CGCTGGTTGTATCATGCGT 58.617 52.632 0.00 0.00 38.81 5.24
2298 2495 0.026674 CGCTGGTTGTATCATGCGTG 59.973 55.000 0.00 0.00 38.81 5.34
2299 2496 1.086696 GCTGGTTGTATCATGCGTGT 58.913 50.000 5.68 0.00 0.00 4.49
2373 2611 0.898320 GAGAGCTTGGCAGAGGTACA 59.102 55.000 0.00 0.00 0.00 2.90
2404 2651 7.680442 CCCCCAAATTTACAAAATAACAAGG 57.320 36.000 0.00 0.00 0.00 3.61
2429 2676 7.121315 GGCATAGATAGAAACCAAGAAAAGTGT 59.879 37.037 0.00 0.00 0.00 3.55
2439 2686 7.432148 AACCAAGAAAAGTGTAGGGAAAATT 57.568 32.000 0.00 0.00 0.00 1.82
2459 2706 8.609478 AAAATTTTACTTTACATCATACGCGG 57.391 30.769 12.47 0.00 0.00 6.46
2468 2740 4.585955 ACATCATACGCGGAATACTTCT 57.414 40.909 12.47 0.00 0.00 2.85
2502 2774 7.823149 ATACGTACTTCATAAAGAAAAGCGT 57.177 32.000 0.00 0.00 38.85 5.07
2503 2775 8.915871 ATACGTACTTCATAAAGAAAAGCGTA 57.084 30.769 0.00 0.00 40.09 4.42
2504 2776 7.042320 ACGTACTTCATAAAGAAAAGCGTAC 57.958 36.000 0.00 0.00 36.01 3.67
2505 2777 6.642131 ACGTACTTCATAAAGAAAAGCGTACA 59.358 34.615 0.00 0.00 35.51 2.90
2506 2778 7.148853 ACGTACTTCATAAAGAAAAGCGTACAG 60.149 37.037 0.00 0.00 35.51 2.74
2507 2779 7.148853 CGTACTTCATAAAGAAAAGCGTACAGT 60.149 37.037 0.00 0.00 35.51 3.55
2508 2780 7.492352 ACTTCATAAAGAAAAGCGTACAGTT 57.508 32.000 0.00 0.00 35.40 3.16
2509 2781 7.927048 ACTTCATAAAGAAAAGCGTACAGTTT 58.073 30.769 0.00 0.00 35.40 2.66
2510 2782 8.403236 ACTTCATAAAGAAAAGCGTACAGTTTT 58.597 29.630 2.58 2.58 35.40 2.43
2511 2783 8.555166 TTCATAAAGAAAAGCGTACAGTTTTG 57.445 30.769 6.85 0.00 33.48 2.44
2512 2784 6.635239 TCATAAAGAAAAGCGTACAGTTTTGC 59.365 34.615 6.85 2.91 33.48 3.68
2513 2785 4.364415 AAGAAAAGCGTACAGTTTTGCA 57.636 36.364 6.85 0.00 31.68 4.08
2514 2786 3.952535 AGAAAAGCGTACAGTTTTGCAG 58.047 40.909 6.85 0.00 31.68 4.41
2515 2787 2.774439 AAAGCGTACAGTTTTGCAGG 57.226 45.000 0.00 0.00 31.92 4.85
2516 2788 1.961793 AAGCGTACAGTTTTGCAGGA 58.038 45.000 0.00 0.00 0.00 3.86
2517 2789 1.961793 AGCGTACAGTTTTGCAGGAA 58.038 45.000 0.00 0.00 0.00 3.36
2518 2790 2.294074 AGCGTACAGTTTTGCAGGAAA 58.706 42.857 0.00 0.00 0.00 3.13
2519 2791 2.685897 AGCGTACAGTTTTGCAGGAAAA 59.314 40.909 0.00 0.00 0.00 2.29
2520 2792 3.129638 AGCGTACAGTTTTGCAGGAAAAA 59.870 39.130 0.73 0.00 35.27 1.94
2539 2811 3.793819 AAAGGGTACGTGTTTATGGGT 57.206 42.857 0.00 0.00 0.00 4.51
2540 2812 3.793819 AAGGGTACGTGTTTATGGGTT 57.206 42.857 0.00 0.00 0.00 4.11
2542 2814 4.906747 AGGGTACGTGTTTATGGGTTTA 57.093 40.909 0.00 0.00 0.00 2.01
2543 2815 5.440207 AGGGTACGTGTTTATGGGTTTAT 57.560 39.130 0.00 0.00 0.00 1.40
2544 2816 5.430886 AGGGTACGTGTTTATGGGTTTATC 58.569 41.667 0.00 0.00 0.00 1.75
2545 2817 4.270808 GGGTACGTGTTTATGGGTTTATCG 59.729 45.833 0.00 0.00 0.00 2.92
2548 2820 3.934579 ACGTGTTTATGGGTTTATCGGAC 59.065 43.478 0.00 0.00 0.00 4.79
2551 2823 5.065474 CGTGTTTATGGGTTTATCGGACATT 59.935 40.000 0.00 0.00 0.00 2.71
2552 2824 6.258287 CGTGTTTATGGGTTTATCGGACATTA 59.742 38.462 0.00 0.00 0.00 1.90
2553 2825 7.201626 CGTGTTTATGGGTTTATCGGACATTAA 60.202 37.037 0.00 0.00 0.00 1.40
2554 2826 8.460428 GTGTTTATGGGTTTATCGGACATTAAA 58.540 33.333 0.00 0.00 0.00 1.52
2555 2827 9.021807 TGTTTATGGGTTTATCGGACATTAAAA 57.978 29.630 0.00 0.00 0.00 1.52
2556 2828 9.292846 GTTTATGGGTTTATCGGACATTAAAAC 57.707 33.333 0.00 0.00 0.00 2.43
2557 2829 5.900865 TGGGTTTATCGGACATTAAAACC 57.099 39.130 8.93 8.93 45.37 3.27
2559 2831 5.773680 TGGGTTTATCGGACATTAAAACCAA 59.226 36.000 14.10 5.68 46.81 3.67
2560 2832 6.437793 TGGGTTTATCGGACATTAAAACCAAT 59.562 34.615 14.10 0.00 46.81 3.16
2561 2833 7.614583 TGGGTTTATCGGACATTAAAACCAATA 59.385 33.333 14.10 0.00 46.81 1.90
2563 2835 9.857957 GGTTTATCGGACATTAAAACCAATAAA 57.142 29.630 9.74 0.00 45.40 1.40
2565 2837 9.557338 TTTATCGGACATTAAAACCAATAAACG 57.443 29.630 0.00 0.00 0.00 3.60
2566 2838 5.940595 TCGGACATTAAAACCAATAAACGG 58.059 37.500 0.00 0.00 0.00 4.44
2567 2839 5.704515 TCGGACATTAAAACCAATAAACGGA 59.295 36.000 0.00 0.00 0.00 4.69
2568 2840 6.206243 TCGGACATTAAAACCAATAAACGGAA 59.794 34.615 0.00 0.00 0.00 4.30
2569 2841 6.862090 CGGACATTAAAACCAATAAACGGAAA 59.138 34.615 0.00 0.00 0.00 3.13
2570 2842 7.061326 CGGACATTAAAACCAATAAACGGAAAG 59.939 37.037 0.00 0.00 0.00 2.62
2571 2843 8.083462 GGACATTAAAACCAATAAACGGAAAGA 58.917 33.333 0.00 0.00 0.00 2.52
2572 2844 9.465985 GACATTAAAACCAATAAACGGAAAGAA 57.534 29.630 0.00 0.00 0.00 2.52
2573 2845 9.990360 ACATTAAAACCAATAAACGGAAAGAAT 57.010 25.926 0.00 0.00 0.00 2.40
2576 2848 9.685828 TTAAAACCAATAAACGGAAAGAATGAG 57.314 29.630 0.00 0.00 0.00 2.90
2577 2849 7.519032 AAACCAATAAACGGAAAGAATGAGA 57.481 32.000 0.00 0.00 0.00 3.27
2578 2850 7.519032 AACCAATAAACGGAAAGAATGAGAA 57.481 32.000 0.00 0.00 0.00 2.87
2579 2851 7.145932 ACCAATAAACGGAAAGAATGAGAAG 57.854 36.000 0.00 0.00 0.00 2.85
2580 2852 6.940298 ACCAATAAACGGAAAGAATGAGAAGA 59.060 34.615 0.00 0.00 0.00 2.87
2581 2853 7.447238 ACCAATAAACGGAAAGAATGAGAAGAA 59.553 33.333 0.00 0.00 0.00 2.52
2582 2854 8.462016 CCAATAAACGGAAAGAATGAGAAGAAT 58.538 33.333 0.00 0.00 0.00 2.40
2583 2855 9.282247 CAATAAACGGAAAGAATGAGAAGAATG 57.718 33.333 0.00 0.00 0.00 2.67
2584 2856 5.886960 AACGGAAAGAATGAGAAGAATGG 57.113 39.130 0.00 0.00 0.00 3.16
2585 2857 5.165961 ACGGAAAGAATGAGAAGAATGGA 57.834 39.130 0.00 0.00 0.00 3.41
2586 2858 5.749462 ACGGAAAGAATGAGAAGAATGGAT 58.251 37.500 0.00 0.00 0.00 3.41
2587 2859 5.587844 ACGGAAAGAATGAGAAGAATGGATG 59.412 40.000 0.00 0.00 0.00 3.51
2588 2860 5.587844 CGGAAAGAATGAGAAGAATGGATGT 59.412 40.000 0.00 0.00 0.00 3.06
2589 2861 6.763135 CGGAAAGAATGAGAAGAATGGATGTA 59.237 38.462 0.00 0.00 0.00 2.29
2590 2862 7.280876 CGGAAAGAATGAGAAGAATGGATGTAA 59.719 37.037 0.00 0.00 0.00 2.41
2591 2863 8.960591 GGAAAGAATGAGAAGAATGGATGTAAA 58.039 33.333 0.00 0.00 0.00 2.01
2592 2864 9.780413 GAAAGAATGAGAAGAATGGATGTAAAC 57.220 33.333 0.00 0.00 0.00 2.01
2593 2865 8.868522 AAGAATGAGAAGAATGGATGTAAACA 57.131 30.769 0.00 0.00 0.00 2.83
2594 2866 8.273780 AGAATGAGAAGAATGGATGTAAACAC 57.726 34.615 0.00 0.00 0.00 3.32
2595 2867 6.668541 ATGAGAAGAATGGATGTAAACACG 57.331 37.500 0.00 0.00 0.00 4.49
2596 2868 4.391830 TGAGAAGAATGGATGTAAACACGC 59.608 41.667 0.00 0.00 0.00 5.34
2597 2869 4.579869 AGAAGAATGGATGTAAACACGCT 58.420 39.130 0.00 0.00 0.00 5.07
2598 2870 4.393062 AGAAGAATGGATGTAAACACGCTG 59.607 41.667 0.00 0.00 0.00 5.18
2599 2871 3.674997 AGAATGGATGTAAACACGCTGT 58.325 40.909 0.00 0.00 0.00 4.40
2600 2872 3.684788 AGAATGGATGTAAACACGCTGTC 59.315 43.478 0.00 0.00 0.00 3.51
2601 2873 2.535012 TGGATGTAAACACGCTGTCA 57.465 45.000 0.00 0.00 0.00 3.58
2602 2874 3.052455 TGGATGTAAACACGCTGTCAT 57.948 42.857 0.00 0.00 0.00 3.06
2603 2875 3.407698 TGGATGTAAACACGCTGTCATT 58.592 40.909 0.00 0.00 0.00 2.57
2604 2876 3.818210 TGGATGTAAACACGCTGTCATTT 59.182 39.130 0.00 0.00 0.00 2.32
2605 2877 4.158384 GGATGTAAACACGCTGTCATTTG 58.842 43.478 0.00 0.00 0.00 2.32
2606 2878 4.320202 GGATGTAAACACGCTGTCATTTGT 60.320 41.667 0.00 0.00 0.00 2.83
2607 2879 5.106869 GGATGTAAACACGCTGTCATTTGTA 60.107 40.000 0.00 0.00 0.00 2.41
2608 2880 5.085636 TGTAAACACGCTGTCATTTGTAC 57.914 39.130 0.00 0.00 0.00 2.90
2609 2881 4.812091 TGTAAACACGCTGTCATTTGTACT 59.188 37.500 0.00 0.00 0.00 2.73
2610 2882 4.893424 AAACACGCTGTCATTTGTACTT 57.107 36.364 0.00 0.00 0.00 2.24
2611 2883 3.878086 ACACGCTGTCATTTGTACTTG 57.122 42.857 0.00 0.00 0.00 3.16
2612 2884 2.032030 ACACGCTGTCATTTGTACTTGC 60.032 45.455 0.00 0.00 0.00 4.01
2613 2885 1.535462 ACGCTGTCATTTGTACTTGCC 59.465 47.619 0.00 0.00 0.00 4.52
2614 2886 1.806542 CGCTGTCATTTGTACTTGCCT 59.193 47.619 0.00 0.00 0.00 4.75
2615 2887 3.000041 CGCTGTCATTTGTACTTGCCTA 59.000 45.455 0.00 0.00 0.00 3.93
2616 2888 3.181520 CGCTGTCATTTGTACTTGCCTAC 60.182 47.826 0.00 0.00 0.00 3.18
2617 2889 3.127030 GCTGTCATTTGTACTTGCCTACC 59.873 47.826 0.00 0.00 0.00 3.18
2618 2890 4.579869 CTGTCATTTGTACTTGCCTACCT 58.420 43.478 0.00 0.00 0.00 3.08
2619 2891 4.980573 TGTCATTTGTACTTGCCTACCTT 58.019 39.130 0.00 0.00 0.00 3.50
2628 2900 3.477530 ACTTGCCTACCTTTGACAACTC 58.522 45.455 0.00 0.00 0.00 3.01
2631 2903 2.288825 TGCCTACCTTTGACAACTCTCG 60.289 50.000 0.00 0.00 0.00 4.04
2633 2905 2.288825 CCTACCTTTGACAACTCTCGCA 60.289 50.000 0.00 0.00 0.00 5.10
2658 2930 8.286097 CAGACTACTGAAAGAGTTTGGAATTTC 58.714 37.037 0.00 0.00 46.03 2.17
2663 2935 4.573201 TGAAAGAGTTTGGAATTTCGACGT 59.427 37.500 0.00 0.00 35.01 4.34
2695 2967 8.685838 AGCTAAAACCAAGTTTGTAGTGATTA 57.314 30.769 0.00 0.00 35.80 1.75
2696 2968 8.565416 AGCTAAAACCAAGTTTGTAGTGATTAC 58.435 33.333 0.00 0.00 35.80 1.89
2697 2969 7.806487 GCTAAAACCAAGTTTGTAGTGATTACC 59.194 37.037 0.00 0.00 35.80 2.85
2698 2970 5.934935 AACCAAGTTTGTAGTGATTACCG 57.065 39.130 0.00 0.00 0.00 4.02
2744 3023 0.331616 AAAATGCGAGGCTAAGGGGT 59.668 50.000 0.00 0.00 0.00 4.95
2753 3032 2.386935 GCTAAGGGGTGGCCAGGAT 61.387 63.158 5.11 0.00 0.00 3.24
2763 3042 3.017442 GGTGGCCAGGATAAGAAGAAAC 58.983 50.000 5.11 0.00 0.00 2.78
2791 3070 5.699097 GGTAACTTTACATGCAAACTCCA 57.301 39.130 0.00 0.00 35.37 3.86
2797 3076 2.283145 ACATGCAAACTCCAGCTCTT 57.717 45.000 0.00 0.00 0.00 2.85
2800 3079 4.144297 ACATGCAAACTCCAGCTCTTTAA 58.856 39.130 0.00 0.00 0.00 1.52
2824 3103 1.200948 AGCAGAATTCCGAAAAGCTGC 59.799 47.619 18.25 18.25 41.86 5.25
2831 3110 2.024176 TCCGAAAAGCTGCAGATACC 57.976 50.000 20.43 2.83 0.00 2.73
2850 3131 1.066143 CCGCAACCTCACCTACTCATT 60.066 52.381 0.00 0.00 0.00 2.57
2855 3136 4.320494 GCAACCTCACCTACTCATTTGTTG 60.320 45.833 0.00 0.00 35.04 3.33
2857 3138 5.048846 ACCTCACCTACTCATTTGTTGTT 57.951 39.130 0.00 0.00 0.00 2.83
2859 3140 5.995897 ACCTCACCTACTCATTTGTTGTTAC 59.004 40.000 0.00 0.00 0.00 2.50
2884 3165 3.701542 AGAGAATGTCGGCTGTGATTAGA 59.298 43.478 0.00 0.00 0.00 2.10
2890 3171 1.278172 CGGCTGTGATTAGATCCGCG 61.278 60.000 0.00 0.00 0.00 6.46
2899 3180 1.865865 TTAGATCCGCGGCTGAATTC 58.134 50.000 23.51 9.90 0.00 2.17
2900 3181 0.750249 TAGATCCGCGGCTGAATTCA 59.250 50.000 23.51 8.12 0.00 2.57
2901 3182 0.811616 AGATCCGCGGCTGAATTCAC 60.812 55.000 23.51 0.00 0.00 3.18
2910 3191 2.359354 TGAATTCACGTGCCCCGG 60.359 61.111 11.67 0.00 42.24 5.73
2912 3193 1.078988 GAATTCACGTGCCCCGGTA 60.079 57.895 11.67 0.00 42.24 4.02
2914 3195 0.956902 AATTCACGTGCCCCGGTAAC 60.957 55.000 11.67 0.00 42.24 2.50
2923 3204 3.249080 CGTGCCCCGGTAACATTAATTAG 59.751 47.826 0.00 0.00 0.00 1.73
2925 3206 4.641541 GTGCCCCGGTAACATTAATTAGTT 59.358 41.667 0.00 0.00 0.00 2.24
2927 3208 6.318396 GTGCCCCGGTAACATTAATTAGTTAA 59.682 38.462 0.00 0.00 32.55 2.01
2930 3211 9.065798 GCCCCGGTAACATTAATTAGTTAATTA 57.934 33.333 0.00 1.22 38.21 1.40
2940 3221 9.445786 CATTAATTAGTTAATTAACCACAGCCG 57.554 33.333 21.92 4.55 45.49 5.52
2943 3224 3.007635 AGTTAATTAACCACAGCCGAGC 58.992 45.455 21.92 0.00 36.88 5.03
2944 3225 1.647346 TAATTAACCACAGCCGAGCG 58.353 50.000 0.00 0.00 0.00 5.03
2962 3243 1.799544 CGGTTAAACTGCGGGTAGTT 58.200 50.000 0.00 0.00 42.43 2.24
3068 3489 3.132824 CCAAGAAACTGCAGAAGGGTTTT 59.867 43.478 23.35 9.22 34.00 2.43
3072 3493 3.595190 AACTGCAGAAGGGTTTTAGGT 57.405 42.857 23.35 0.00 0.00 3.08
3242 3663 1.220749 GGACACGCCCTCAAGCATA 59.779 57.895 0.00 0.00 0.00 3.14
3351 3782 4.568072 TGGCATTATCAAGTACAGTGGT 57.432 40.909 0.00 0.00 0.00 4.16
3352 3783 5.685520 TGGCATTATCAAGTACAGTGGTA 57.314 39.130 0.00 0.00 0.00 3.25
3381 3812 7.923344 ACATACTACATGCTAAAAGCTAGACAG 59.077 37.037 0.00 0.00 42.97 3.51
3400 3880 2.995939 CAGCATCGCCGTACATGATAAT 59.004 45.455 0.00 0.00 0.00 1.28
3401 3881 2.995939 AGCATCGCCGTACATGATAATG 59.004 45.455 0.00 0.00 0.00 1.90
3422 3903 5.661056 TGATGTAACTTACTGACCAGAGG 57.339 43.478 3.76 0.00 0.00 3.69
3424 3905 5.778241 TGATGTAACTTACTGACCAGAGGAA 59.222 40.000 3.76 0.00 0.00 3.36
3433 3914 3.165875 CTGACCAGAGGAAGGACACTTA 58.834 50.000 0.00 0.00 36.97 2.24
3441 3922 7.182930 ACCAGAGGAAGGACACTTAGATAATTT 59.817 37.037 0.00 0.00 36.97 1.82
3458 3939 4.864916 AATTTCAAGGATCGATGTCGTG 57.135 40.909 0.54 3.80 40.80 4.35
3472 3953 0.734889 GTCGTGCAAGGGATTCATGG 59.265 55.000 0.00 0.00 0.00 3.66
3482 3963 5.172934 CAAGGGATTCATGGTGTTTTCATG 58.827 41.667 0.00 0.00 42.28 3.07
3483 3964 4.419282 AGGGATTCATGGTGTTTTCATGT 58.581 39.130 0.00 0.00 41.79 3.21
3484 3965 5.579047 AGGGATTCATGGTGTTTTCATGTA 58.421 37.500 0.00 0.00 41.79 2.29
3490 3971 6.121776 TCATGGTGTTTTCATGTAGTACCT 57.878 37.500 0.00 0.00 41.79 3.08
3546 4027 1.281899 GTCGCACAGCAAGAGGATAC 58.718 55.000 0.00 0.00 0.00 2.24
3561 4042 2.618709 AGGATACGCAAAGCTAAATGGC 59.381 45.455 0.00 0.00 46.39 4.40
3623 4656 3.177228 AGCATCTCTAGTTGAACACCCT 58.823 45.455 0.00 0.00 0.00 4.34
3625 4658 3.196685 GCATCTCTAGTTGAACACCCTCT 59.803 47.826 0.00 0.00 0.00 3.69
3626 4659 4.323104 GCATCTCTAGTTGAACACCCTCTT 60.323 45.833 0.00 0.00 0.00 2.85
3629 4662 5.017490 TCTCTAGTTGAACACCCTCTTAGG 58.983 45.833 0.00 0.00 34.30 2.69
3631 4664 5.590818 TCTAGTTGAACACCCTCTTAGGAT 58.409 41.667 0.00 0.00 37.67 3.24
3632 4665 6.023603 TCTAGTTGAACACCCTCTTAGGATT 58.976 40.000 0.00 0.00 37.67 3.01
3633 4666 5.584551 AGTTGAACACCCTCTTAGGATTT 57.415 39.130 0.00 0.00 37.67 2.17
3635 4668 7.086685 AGTTGAACACCCTCTTAGGATTTAA 57.913 36.000 0.00 0.00 37.67 1.52
3636 4669 7.168905 AGTTGAACACCCTCTTAGGATTTAAG 58.831 38.462 0.00 0.00 37.67 1.85
3637 4670 6.062258 TGAACACCCTCTTAGGATTTAAGG 57.938 41.667 0.00 0.00 37.67 2.69
3642 4675 5.554437 CCCTCTTAGGATTTAAGGGTCTC 57.446 47.826 0.00 0.00 41.56 3.36
3643 4676 5.220521 CCCTCTTAGGATTTAAGGGTCTCT 58.779 45.833 0.00 0.00 41.56 3.10
3644 4677 6.382925 CCCTCTTAGGATTTAAGGGTCTCTA 58.617 44.000 0.00 0.00 41.56 2.43
3645 4678 6.844917 CCCTCTTAGGATTTAAGGGTCTCTAA 59.155 42.308 0.00 0.00 41.56 2.10
3646 4679 7.202020 CCCTCTTAGGATTTAAGGGTCTCTAAC 60.202 44.444 0.00 0.00 41.56 2.34
3647 4680 7.202020 CCTCTTAGGATTTAAGGGTCTCTAACC 60.202 44.444 0.00 0.00 42.30 2.85
3655 4688 3.334769 GGTCTCTAACCCATCCCCA 57.665 57.895 0.00 0.00 42.85 4.96
3656 4689 1.591768 GGTCTCTAACCCATCCCCAA 58.408 55.000 0.00 0.00 42.85 4.12
3657 4690 1.920351 GGTCTCTAACCCATCCCCAAA 59.080 52.381 0.00 0.00 42.85 3.28
3658 4691 2.310647 GGTCTCTAACCCATCCCCAAAA 59.689 50.000 0.00 0.00 42.85 2.44
3659 4692 3.621558 GTCTCTAACCCATCCCCAAAAG 58.378 50.000 0.00 0.00 0.00 2.27
3660 4693 3.265995 GTCTCTAACCCATCCCCAAAAGA 59.734 47.826 0.00 0.00 0.00 2.52
3661 4694 3.523564 TCTCTAACCCATCCCCAAAAGAG 59.476 47.826 0.00 0.00 0.00 2.85
3662 4695 2.580783 TCTAACCCATCCCCAAAAGAGG 59.419 50.000 0.00 0.00 0.00 3.69
3663 4696 1.167033 AACCCATCCCCAAAAGAGGT 58.833 50.000 0.00 0.00 0.00 3.85
3664 4697 2.068831 ACCCATCCCCAAAAGAGGTA 57.931 50.000 0.00 0.00 0.00 3.08
3665 4698 1.923148 ACCCATCCCCAAAAGAGGTAG 59.077 52.381 0.00 0.00 0.00 3.18
3668 4701 2.846827 CCATCCCCAAAAGAGGTAGTCT 59.153 50.000 0.00 0.00 36.94 3.24
3672 4705 4.175962 TCCCCAAAAGAGGTAGTCTCAAT 58.824 43.478 0.00 0.00 44.81 2.57
3681 4714 9.588096 AAAAGAGGTAGTCTCAATAACCATTTT 57.412 29.630 0.00 0.00 44.81 1.82
3682 4715 8.567285 AAGAGGTAGTCTCAATAACCATTTTG 57.433 34.615 0.00 0.00 44.81 2.44
3683 4716 7.112779 AGAGGTAGTCTCAATAACCATTTTGG 58.887 38.462 0.00 0.00 44.81 3.28
3684 4717 5.652452 AGGTAGTCTCAATAACCATTTTGGC 59.348 40.000 0.00 0.00 42.67 4.52
3685 4718 5.163550 GGTAGTCTCAATAACCATTTTGGCC 60.164 44.000 0.00 0.00 42.67 5.36
3686 4719 4.677182 AGTCTCAATAACCATTTTGGCCT 58.323 39.130 3.32 0.00 42.67 5.19
3687 4720 4.706962 AGTCTCAATAACCATTTTGGCCTC 59.293 41.667 3.32 0.00 42.67 4.70
3688 4721 4.462483 GTCTCAATAACCATTTTGGCCTCA 59.538 41.667 3.32 0.00 42.67 3.86
3689 4722 4.462483 TCTCAATAACCATTTTGGCCTCAC 59.538 41.667 3.32 0.00 42.67 3.51
3690 4723 4.155709 TCAATAACCATTTTGGCCTCACA 58.844 39.130 3.32 0.00 42.67 3.58
3691 4724 4.590647 TCAATAACCATTTTGGCCTCACAA 59.409 37.500 3.32 0.00 42.67 3.33
3692 4725 5.070981 TCAATAACCATTTTGGCCTCACAAA 59.929 36.000 3.32 0.00 42.67 2.83
3714 4747 3.312736 AAAAGCCCCTTTCTCTGAACA 57.687 42.857 0.00 0.00 31.99 3.18
3715 4748 2.575805 AAGCCCCTTTCTCTGAACAG 57.424 50.000 0.00 0.00 0.00 3.16
3716 4749 1.734655 AGCCCCTTTCTCTGAACAGA 58.265 50.000 4.45 4.45 35.85 3.41
3717 4750 1.349357 AGCCCCTTTCTCTGAACAGAC 59.651 52.381 0.00 0.00 33.22 3.51
3718 4751 1.072331 GCCCCTTTCTCTGAACAGACA 59.928 52.381 0.00 0.00 33.22 3.41
3719 4752 2.873649 GCCCCTTTCTCTGAACAGACAG 60.874 54.545 0.00 0.00 39.02 3.51
3720 4753 2.289945 CCCCTTTCTCTGAACAGACAGG 60.290 54.545 0.00 6.68 38.31 4.00
3721 4754 2.289945 CCCTTTCTCTGAACAGACAGGG 60.290 54.545 17.43 17.43 37.64 4.45
3722 4755 2.289945 CCTTTCTCTGAACAGACAGGGG 60.290 54.545 0.00 0.00 38.73 4.79
3723 4756 0.687354 TTCTCTGAACAGACAGGGGC 59.313 55.000 0.00 0.00 38.73 5.80
3724 4757 0.471780 TCTCTGAACAGACAGGGGCA 60.472 55.000 0.00 0.00 38.73 5.36
3725 4758 0.397941 CTCTGAACAGACAGGGGCAA 59.602 55.000 0.00 0.00 38.31 4.52
3726 4759 0.843309 TCTGAACAGACAGGGGCAAA 59.157 50.000 0.00 0.00 38.31 3.68
3727 4760 1.425066 TCTGAACAGACAGGGGCAAAT 59.575 47.619 0.00 0.00 38.31 2.32
3728 4761 1.815003 CTGAACAGACAGGGGCAAATC 59.185 52.381 0.00 0.00 34.64 2.17
3729 4762 1.144708 TGAACAGACAGGGGCAAATCA 59.855 47.619 0.00 0.00 0.00 2.57
3730 4763 2.225091 TGAACAGACAGGGGCAAATCAT 60.225 45.455 0.00 0.00 0.00 2.45
3731 4764 2.610438 ACAGACAGGGGCAAATCATT 57.390 45.000 0.00 0.00 0.00 2.57
3732 4765 2.893424 ACAGACAGGGGCAAATCATTT 58.107 42.857 0.00 0.00 0.00 2.32
3733 4766 2.564062 ACAGACAGGGGCAAATCATTTG 59.436 45.455 5.68 5.68 43.44 2.32
3734 4767 2.564062 CAGACAGGGGCAAATCATTTGT 59.436 45.455 11.80 0.00 42.56 2.83
3735 4768 3.007182 CAGACAGGGGCAAATCATTTGTT 59.993 43.478 11.80 0.00 42.56 2.83
3736 4769 3.007182 AGACAGGGGCAAATCATTTGTTG 59.993 43.478 11.80 7.90 42.56 3.33
3737 4770 2.705127 ACAGGGGCAAATCATTTGTTGT 59.295 40.909 11.80 8.45 42.56 3.32
3738 4771 3.900601 ACAGGGGCAAATCATTTGTTGTA 59.099 39.130 11.80 0.00 42.56 2.41
3739 4772 4.531732 ACAGGGGCAAATCATTTGTTGTAT 59.468 37.500 11.80 0.00 42.56 2.29
3740 4773 5.012975 ACAGGGGCAAATCATTTGTTGTATT 59.987 36.000 11.80 0.00 42.56 1.89
3741 4774 5.939296 CAGGGGCAAATCATTTGTTGTATTT 59.061 36.000 11.80 0.00 42.56 1.40
3742 4775 5.939296 AGGGGCAAATCATTTGTTGTATTTG 59.061 36.000 11.80 0.00 42.56 2.32
3743 4776 5.704978 GGGGCAAATCATTTGTTGTATTTGT 59.295 36.000 11.80 0.00 42.56 2.83
3744 4777 6.206438 GGGGCAAATCATTTGTTGTATTTGTT 59.794 34.615 11.80 0.00 42.56 2.83
3745 4778 7.255416 GGGGCAAATCATTTGTTGTATTTGTTT 60.255 33.333 11.80 0.00 42.56 2.83
3746 4779 8.778358 GGGCAAATCATTTGTTGTATTTGTTTA 58.222 29.630 11.80 0.00 42.56 2.01
3747 4780 9.810231 GGCAAATCATTTGTTGTATTTGTTTAG 57.190 29.630 11.80 0.00 42.56 1.85
3900 4934 6.347696 AGTTGAAATGGATTTGAAGTTTGCA 58.652 32.000 0.00 0.00 0.00 4.08
3911 4945 4.122143 TGAAGTTTGCAAAAGGAAGTGG 57.878 40.909 14.67 0.00 0.00 4.00
3918 4952 6.897413 AGTTTGCAAAAGGAAGTGGGATATAT 59.103 34.615 14.67 0.00 0.00 0.86
3920 4954 6.012337 TGCAAAAGGAAGTGGGATATATCA 57.988 37.500 14.60 0.00 0.00 2.15
3928 4962 7.521669 AGGAAGTGGGATATATCAAAGGAAAG 58.478 38.462 14.60 0.00 0.00 2.62
3935 4969 9.009675 TGGGATATATCAAAGGAAAGTTTAGGA 57.990 33.333 14.60 0.00 0.00 2.94
3953 4987 7.787904 AGTTTAGGAAGTTAAGTTTTGGGGATT 59.212 33.333 0.00 0.00 0.00 3.01
3966 5000 3.464720 TGGGGATTGGTTAGAATGCAA 57.535 42.857 0.00 0.00 0.00 4.08
3980 5014 1.463674 ATGCAACCTAGAAAAGCCGG 58.536 50.000 0.00 0.00 0.00 6.13
3981 5015 0.398696 TGCAACCTAGAAAAGCCGGA 59.601 50.000 5.05 0.00 0.00 5.14
3986 5022 4.560716 GCAACCTAGAAAAGCCGGATTTTT 60.561 41.667 29.39 21.49 32.62 1.94
3993 5029 0.042581 AAGCCGGATTTTTGGGGGAT 59.957 50.000 5.05 0.00 0.00 3.85
3995 5031 0.464036 GCCGGATTTTTGGGGGATTC 59.536 55.000 5.05 0.00 0.00 2.52
4007 5043 1.275666 GGGGATTCAAGTTTTGGGGG 58.724 55.000 0.00 0.00 0.00 5.40
4079 5115 9.503399 AACTAATACTCTTAACACCCTTTCAAG 57.497 33.333 0.00 0.00 0.00 3.02
4162 5199 4.558538 ACGCTTGATGAAGAAATATGCC 57.441 40.909 0.00 0.00 0.00 4.40
4170 5207 7.741027 TGATGAAGAAATATGCCTGAATCTC 57.259 36.000 0.00 0.00 0.00 2.75
4172 5209 7.660617 TGATGAAGAAATATGCCTGAATCTCTC 59.339 37.037 0.00 0.00 0.00 3.20
4173 5210 6.892485 TGAAGAAATATGCCTGAATCTCTCA 58.108 36.000 0.00 0.00 0.00 3.27
4174 5211 7.515586 TGAAGAAATATGCCTGAATCTCTCAT 58.484 34.615 0.00 0.00 32.14 2.90
4191 5228 6.276091 TCTCTCATGAGACATATTGGAAACG 58.724 40.000 21.67 7.31 43.73 3.60
4200 5237 7.822334 TGAGACATATTGGAAACGAATAGTTGT 59.178 33.333 0.00 0.00 43.37 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 146 2.498885 GAGATCAGCCTTGCCCAAAATT 59.501 45.455 0.00 0.00 0.00 1.82
148 149 0.700564 AGAGATCAGCCTTGCCCAAA 59.299 50.000 0.00 0.00 0.00 3.28
204 205 4.571984 CAGCATCTTCGTTACATCCATTCA 59.428 41.667 0.00 0.00 0.00 2.57
208 209 3.610040 ACAGCATCTTCGTTACATCCA 57.390 42.857 0.00 0.00 0.00 3.41
223 224 3.554934 ACTGAAAACCTCATCAACAGCA 58.445 40.909 0.00 0.00 32.14 4.41
226 227 5.997746 CCTCTTACTGAAAACCTCATCAACA 59.002 40.000 0.00 0.00 32.14 3.33
295 297 5.205517 TCCAAAACCCATGTATGAGGAAT 57.794 39.130 0.00 0.00 0.00 3.01
379 381 7.008628 GCTCATGTTACAGCATTTCAAATGTAC 59.991 37.037 11.80 3.94 35.56 2.90
383 385 6.028146 TGCTCATGTTACAGCATTTCAAAT 57.972 33.333 2.85 0.00 40.80 2.32
439 441 3.181501 ACAACACAAAGTCACCGACAATG 60.182 43.478 0.00 0.00 34.60 2.82
442 444 2.004017 GACAACACAAAGTCACCGACA 58.996 47.619 0.00 0.00 34.60 4.35
612 616 8.001549 CGAACAAAATTTCCAGTTTAAAATCGG 58.998 33.333 0.00 0.00 0.00 4.18
613 617 8.747666 TCGAACAAAATTTCCAGTTTAAAATCG 58.252 29.630 0.00 0.00 0.00 3.34
622 626 3.951680 AGGTGTCGAACAAAATTTCCAGT 59.048 39.130 0.00 0.00 0.00 4.00
724 728 5.902613 TTCCAATTCACTCCACAATCATC 57.097 39.130 0.00 0.00 0.00 2.92
739 743 3.454082 TCACCCTTGCTTTGTTTCCAATT 59.546 39.130 0.00 0.00 0.00 2.32
991 996 1.181098 AAGAACGCCATGGCTTTGCT 61.181 50.000 31.08 22.70 39.32 3.91
1089 1102 2.156343 AACTCTGCTTCAGTCGGAAC 57.844 50.000 0.00 0.00 32.61 3.62
1109 1122 4.320714 GCATGAGCAAAAGACATCAAGTCA 60.321 41.667 0.00 0.00 44.75 3.41
1110 1123 4.082895 AGCATGAGCAAAAGACATCAAGTC 60.083 41.667 0.00 0.00 45.33 3.01
1111 1124 3.825014 AGCATGAGCAAAAGACATCAAGT 59.175 39.130 0.00 0.00 45.49 3.16
1112 1125 4.436242 AGCATGAGCAAAAGACATCAAG 57.564 40.909 0.00 0.00 45.49 3.02
1114 1127 3.057104 CCAAGCATGAGCAAAAGACATCA 60.057 43.478 0.00 0.00 45.49 3.07
1115 1128 3.192001 TCCAAGCATGAGCAAAAGACATC 59.808 43.478 0.00 0.00 45.49 3.06
1116 1129 3.159472 TCCAAGCATGAGCAAAAGACAT 58.841 40.909 0.00 0.00 45.49 3.06
1140 1209 1.449956 GGCCTCTCAGAGCTGCAAG 60.450 63.158 1.02 0.00 0.00 4.01
1189 1258 1.070758 ACATGGTATCGCACTGATCCC 59.929 52.381 0.00 0.00 38.57 3.85
1220 1289 2.224378 TGGCTGATTCGAAGATGGGATC 60.224 50.000 3.35 0.00 35.04 3.36
1221 1290 1.770658 TGGCTGATTCGAAGATGGGAT 59.229 47.619 3.35 0.00 35.04 3.85
1222 1291 1.134401 GTGGCTGATTCGAAGATGGGA 60.134 52.381 3.35 0.00 35.04 4.37
1223 1292 1.303309 GTGGCTGATTCGAAGATGGG 58.697 55.000 3.35 0.00 35.04 4.00
1224 1293 2.028420 TGTGGCTGATTCGAAGATGG 57.972 50.000 3.35 0.00 35.04 3.51
1226 1295 2.749621 GGTTTGTGGCTGATTCGAAGAT 59.250 45.455 3.35 0.00 35.04 2.40
1227 1296 2.151202 GGTTTGTGGCTGATTCGAAGA 58.849 47.619 3.35 0.00 0.00 2.87
1228 1297 1.879380 TGGTTTGTGGCTGATTCGAAG 59.121 47.619 3.35 0.00 0.00 3.79
1230 1299 1.811965 CATGGTTTGTGGCTGATTCGA 59.188 47.619 0.00 0.00 0.00 3.71
1231 1300 1.541147 ACATGGTTTGTGGCTGATTCG 59.459 47.619 0.00 0.00 37.11 3.34
1282 1356 0.538584 TCATTCGATCAGCTGGCAGT 59.461 50.000 17.16 0.00 0.00 4.40
1297 1371 2.648059 GAGGCCTGCACATAGTTCATT 58.352 47.619 12.00 0.00 0.00 2.57
1301 1375 1.221840 CCGAGGCCTGCACATAGTT 59.778 57.895 12.00 0.00 0.00 2.24
1303 1377 2.590007 GCCGAGGCCTGCACATAG 60.590 66.667 12.00 0.00 34.56 2.23
1304 1378 4.529219 CGCCGAGGCCTGCACATA 62.529 66.667 12.00 0.00 37.98 2.29
1391 1466 4.680237 CGTGAACTCCGGCAGGCA 62.680 66.667 0.00 0.00 37.47 4.75
1419 1494 4.560716 CGAACTTGTGGTACATCTTCCTCA 60.561 45.833 0.00 0.00 44.52 3.86
1460 1535 3.075005 TGCGTACCCCTCTCTGGC 61.075 66.667 0.00 0.00 0.00 4.85
1464 1539 1.511768 GTCAGTGCGTACCCCTCTC 59.488 63.158 0.00 0.00 0.00 3.20
1468 1543 4.065281 AGCGTCAGTGCGTACCCC 62.065 66.667 0.00 0.00 40.67 4.95
1507 1582 2.202932 CGATCCTTCGGCCTGGTG 60.203 66.667 0.00 0.00 41.74 4.17
1562 1729 3.518998 CTGCGACCCGAGGACGAT 61.519 66.667 16.04 0.00 42.79 3.73
1615 1782 1.301401 GTACACGAGCTTGGTGGCA 60.301 57.895 19.21 7.32 39.69 4.92
1663 1830 0.242017 GACAGTAGTGGCGTACCGTT 59.758 55.000 1.92 0.00 39.70 4.44
1672 1839 0.792640 CGCAAGCAAGACAGTAGTGG 59.207 55.000 1.92 0.00 0.00 4.00
1673 1840 1.723542 CTCGCAAGCAAGACAGTAGTG 59.276 52.381 0.00 0.00 37.18 2.74
1674 1841 1.341531 ACTCGCAAGCAAGACAGTAGT 59.658 47.619 0.00 0.00 37.18 2.73
1675 1842 1.989165 GACTCGCAAGCAAGACAGTAG 59.011 52.381 0.00 0.00 37.18 2.57
1677 1844 0.601311 GGACTCGCAAGCAAGACAGT 60.601 55.000 0.00 0.00 37.18 3.55
1679 1846 1.301716 GGGACTCGCAAGCAAGACA 60.302 57.895 0.00 0.00 37.18 3.41
1680 1847 2.383527 CGGGACTCGCAAGCAAGAC 61.384 63.158 0.00 0.00 37.18 3.01
1681 1848 2.048222 CGGGACTCGCAAGCAAGA 60.048 61.111 0.00 0.00 37.18 3.02
1683 1850 2.664851 CACGGGACTCGCAAGCAA 60.665 61.111 0.00 0.00 43.89 3.91
1684 1851 4.680237 CCACGGGACTCGCAAGCA 62.680 66.667 0.00 0.00 43.89 3.91
1685 1852 4.373116 TCCACGGGACTCGCAAGC 62.373 66.667 0.00 0.00 43.89 4.01
1686 1853 2.125912 CTCCACGGGACTCGCAAG 60.126 66.667 0.00 0.00 43.89 4.01
1687 1854 2.599281 TCTCCACGGGACTCGCAA 60.599 61.111 0.00 0.00 43.89 4.85
1688 1855 3.371063 GTCTCCACGGGACTCGCA 61.371 66.667 0.00 0.00 43.89 5.10
1689 1856 4.477975 CGTCTCCACGGGACTCGC 62.478 72.222 0.00 0.00 42.73 5.03
1690 1857 2.254703 CTTCGTCTCCACGGGACTCG 62.255 65.000 0.00 0.00 46.70 4.18
1710 1877 4.006989 ACGCCATTAGCACTACAATTGAA 58.993 39.130 13.59 0.00 44.04 2.69
1713 1880 2.682856 CCACGCCATTAGCACTACAATT 59.317 45.455 0.00 0.00 44.04 2.32
1714 1881 2.288666 CCACGCCATTAGCACTACAAT 58.711 47.619 0.00 0.00 44.04 2.71
1722 1889 1.718757 CCAAGAGCCACGCCATTAGC 61.719 60.000 0.00 0.00 38.52 3.09
1723 1890 1.718757 GCCAAGAGCCACGCCATTAG 61.719 60.000 0.00 0.00 34.35 1.73
1724 1891 1.748879 GCCAAGAGCCACGCCATTA 60.749 57.895 0.00 0.00 34.35 1.90
1725 1892 3.064324 GCCAAGAGCCACGCCATT 61.064 61.111 0.00 0.00 34.35 3.16
1836 2011 1.877576 CTACTGCTGGCTGGTGTCGA 61.878 60.000 4.64 0.00 0.00 4.20
1849 2028 3.119209 GGTGGGTACTGAACTACTACTGC 60.119 52.174 0.00 0.00 0.00 4.40
1885 2065 2.363795 TCAGGTCTAGGGGCACGG 60.364 66.667 0.00 0.00 0.00 4.94
1886 2066 1.682684 ACTCAGGTCTAGGGGCACG 60.683 63.158 0.00 0.00 0.00 5.34
2068 2265 0.249868 TCCAGGCGACACAAGACAAG 60.250 55.000 0.00 0.00 0.00 3.16
2069 2266 0.249868 CTCCAGGCGACACAAGACAA 60.250 55.000 0.00 0.00 0.00 3.18
2070 2267 1.367471 CTCCAGGCGACACAAGACA 59.633 57.895 0.00 0.00 0.00 3.41
2071 2268 0.249911 AACTCCAGGCGACACAAGAC 60.250 55.000 0.00 0.00 0.00 3.01
2072 2269 0.249868 CAACTCCAGGCGACACAAGA 60.250 55.000 0.00 0.00 0.00 3.02
2097 2294 0.385751 ATACATCCAGCACGTCGGAG 59.614 55.000 0.00 0.00 33.97 4.63
2115 2312 5.178996 GCTCGAAGATGTCTGCAAATCATAT 59.821 40.000 6.50 0.00 33.89 1.78
2116 2313 4.509230 GCTCGAAGATGTCTGCAAATCATA 59.491 41.667 6.50 0.00 33.89 2.15
2117 2314 3.311871 GCTCGAAGATGTCTGCAAATCAT 59.688 43.478 6.50 2.86 33.89 2.45
2118 2315 2.674852 GCTCGAAGATGTCTGCAAATCA 59.325 45.455 6.50 0.00 33.89 2.57
2119 2316 2.285486 CGCTCGAAGATGTCTGCAAATC 60.285 50.000 0.00 0.00 33.89 2.17
2120 2317 1.662629 CGCTCGAAGATGTCTGCAAAT 59.337 47.619 0.00 0.00 33.89 2.32
2121 2318 1.070821 CGCTCGAAGATGTCTGCAAA 58.929 50.000 0.00 0.00 33.89 3.68
2122 2319 0.737367 CCGCTCGAAGATGTCTGCAA 60.737 55.000 0.00 0.00 33.89 4.08
2225 2422 1.406539 CAAAATTGGGAGCCGATGGAG 59.593 52.381 0.00 0.00 0.00 3.86
2227 2424 1.185315 ACAAAATTGGGAGCCGATGG 58.815 50.000 0.00 0.00 0.00 3.51
2228 2425 3.317603 AAACAAAATTGGGAGCCGATG 57.682 42.857 0.00 0.00 0.00 3.84
2229 2426 4.064388 CAAAAACAAAATTGGGAGCCGAT 58.936 39.130 0.00 0.00 0.00 4.18
2233 2430 6.435430 ACTTTCAAAAACAAAATTGGGAGC 57.565 33.333 0.00 0.00 0.00 4.70
2234 2431 7.495606 AGCTACTTTCAAAAACAAAATTGGGAG 59.504 33.333 0.00 0.00 0.00 4.30
2235 2432 7.334858 AGCTACTTTCAAAAACAAAATTGGGA 58.665 30.769 0.00 0.00 0.00 4.37
2236 2433 7.516627 CGAGCTACTTTCAAAAACAAAATTGGG 60.517 37.037 0.00 0.00 0.00 4.12
2237 2434 7.221838 TCGAGCTACTTTCAAAAACAAAATTGG 59.778 33.333 0.00 0.00 0.00 3.16
2238 2435 8.050170 GTCGAGCTACTTTCAAAAACAAAATTG 58.950 33.333 0.00 0.00 0.00 2.32
2239 2436 7.222031 GGTCGAGCTACTTTCAAAAACAAAATT 59.778 33.333 7.51 0.00 0.00 1.82
2240 2437 6.695713 GGTCGAGCTACTTTCAAAAACAAAAT 59.304 34.615 7.51 0.00 0.00 1.82
2241 2438 6.031471 GGTCGAGCTACTTTCAAAAACAAAA 58.969 36.000 7.51 0.00 0.00 2.44
2242 2439 5.575019 GGTCGAGCTACTTTCAAAAACAAA 58.425 37.500 7.51 0.00 0.00 2.83
2243 2440 4.260456 CGGTCGAGCTACTTTCAAAAACAA 60.260 41.667 13.48 0.00 0.00 2.83
2244 2441 3.246699 CGGTCGAGCTACTTTCAAAAACA 59.753 43.478 13.48 0.00 0.00 2.83
2245 2442 3.363673 CCGGTCGAGCTACTTTCAAAAAC 60.364 47.826 13.48 0.00 0.00 2.43
2246 2443 2.803956 CCGGTCGAGCTACTTTCAAAAA 59.196 45.455 13.48 0.00 0.00 1.94
2247 2444 2.409975 CCGGTCGAGCTACTTTCAAAA 58.590 47.619 13.48 0.00 0.00 2.44
2248 2445 1.337447 CCCGGTCGAGCTACTTTCAAA 60.337 52.381 13.48 0.00 0.00 2.69
2249 2446 0.245539 CCCGGTCGAGCTACTTTCAA 59.754 55.000 13.48 0.00 0.00 2.69
2250 2447 0.896940 ACCCGGTCGAGCTACTTTCA 60.897 55.000 13.48 0.00 0.00 2.69
2251 2448 0.179142 GACCCGGTCGAGCTACTTTC 60.179 60.000 13.48 0.00 0.00 2.62
2252 2449 1.602327 GGACCCGGTCGAGCTACTTT 61.602 60.000 13.48 0.00 32.65 2.66
2253 2450 2.050934 GGACCCGGTCGAGCTACTT 61.051 63.158 13.48 0.00 32.65 2.24
2254 2451 2.439883 GGACCCGGTCGAGCTACT 60.440 66.667 13.48 0.00 32.65 2.57
2255 2452 3.525545 GGGACCCGGTCGAGCTAC 61.526 72.222 13.48 0.00 32.65 3.58
2256 2453 4.051167 TGGGACCCGGTCGAGCTA 62.051 66.667 13.48 0.00 32.65 3.32
2259 2456 1.252904 TTAACTGGGACCCGGTCGAG 61.253 60.000 25.83 9.42 43.15 4.04
2264 2461 2.435410 GCGTTAACTGGGACCCGG 60.435 66.667 18.66 18.66 35.68 5.73
2276 2473 1.930503 CGCATGATACAACCAGCGTTA 59.069 47.619 0.00 0.00 40.25 3.18
2285 2482 1.355005 CACGGACACGCATGATACAA 58.645 50.000 0.00 0.00 46.04 2.41
2288 2485 0.179121 GTCCACGGACACGCATGATA 60.179 55.000 11.43 0.00 46.04 2.15
2289 2486 1.447838 GTCCACGGACACGCATGAT 60.448 57.895 11.43 0.00 46.04 2.45
2290 2487 2.048597 GTCCACGGACACGCATGA 60.049 61.111 11.43 0.00 46.04 3.07
2291 2488 3.478394 CGTCCACGGACACGCATG 61.478 66.667 16.23 0.00 44.77 4.06
2296 2493 3.036084 CACTGCGTCCACGGACAC 61.036 66.667 16.23 7.15 44.77 3.67
2297 2494 4.961511 GCACTGCGTCCACGGACA 62.962 66.667 16.23 0.00 44.77 4.02
2298 2495 4.961511 TGCACTGCGTCCACGGAC 62.962 66.667 6.12 6.12 41.40 4.79
2299 2496 4.961511 GTGCACTGCGTCCACGGA 62.962 66.667 10.32 0.00 40.23 4.69
2394 2636 9.474313 TTGGTTTCTATCTATGCCTTGTTATTT 57.526 29.630 0.00 0.00 0.00 1.40
2397 2644 7.857456 TCTTGGTTTCTATCTATGCCTTGTTA 58.143 34.615 0.00 0.00 0.00 2.41
2400 2647 7.630242 TTTCTTGGTTTCTATCTATGCCTTG 57.370 36.000 0.00 0.00 0.00 3.61
2404 2651 8.045176 ACACTTTTCTTGGTTTCTATCTATGC 57.955 34.615 0.00 0.00 0.00 3.14
2413 2660 6.459670 TTTCCCTACACTTTTCTTGGTTTC 57.540 37.500 0.00 0.00 0.00 2.78
2439 2686 7.922278 AGTATTCCGCGTATGATGTAAAGTAAA 59.078 33.333 4.92 0.00 0.00 2.01
2477 2749 8.915871 ACGCTTTTCTTTATGAAGTACGTATA 57.084 30.769 0.00 0.00 36.77 1.47
2478 2750 7.823149 ACGCTTTTCTTTATGAAGTACGTAT 57.177 32.000 0.00 0.00 36.77 3.06
2480 2752 6.642131 TGTACGCTTTTCTTTATGAAGTACGT 59.358 34.615 0.00 0.00 36.35 3.57
2482 2754 8.015409 ACTGTACGCTTTTCTTTATGAAGTAC 57.985 34.615 0.00 0.00 35.22 2.73
2483 2755 8.597662 AACTGTACGCTTTTCTTTATGAAGTA 57.402 30.769 0.00 0.00 35.89 2.24
2485 2757 8.682016 CAAAACTGTACGCTTTTCTTTATGAAG 58.318 33.333 0.00 0.00 35.89 3.02
2486 2758 7.166804 GCAAAACTGTACGCTTTTCTTTATGAA 59.833 33.333 0.00 0.00 0.00 2.57
2487 2759 6.635239 GCAAAACTGTACGCTTTTCTTTATGA 59.365 34.615 0.00 0.00 0.00 2.15
2488 2760 6.416455 TGCAAAACTGTACGCTTTTCTTTATG 59.584 34.615 0.00 0.00 0.00 1.90
2490 2762 5.881447 TGCAAAACTGTACGCTTTTCTTTA 58.119 33.333 0.00 0.00 0.00 1.85
2493 2765 3.243068 CCTGCAAAACTGTACGCTTTTCT 60.243 43.478 0.00 0.00 0.00 2.52
2494 2766 3.042887 CCTGCAAAACTGTACGCTTTTC 58.957 45.455 0.00 0.00 0.00 2.29
2495 2767 2.685897 TCCTGCAAAACTGTACGCTTTT 59.314 40.909 0.00 0.00 0.00 2.27
2496 2768 2.294074 TCCTGCAAAACTGTACGCTTT 58.706 42.857 0.00 0.00 0.00 3.51
2497 2769 1.961793 TCCTGCAAAACTGTACGCTT 58.038 45.000 0.00 0.00 0.00 4.68
2498 2770 1.961793 TTCCTGCAAAACTGTACGCT 58.038 45.000 0.00 0.00 0.00 5.07
2517 2789 4.472496 ACCCATAAACACGTACCCTTTTT 58.528 39.130 0.00 0.00 0.00 1.94
2518 2790 4.103013 ACCCATAAACACGTACCCTTTT 57.897 40.909 0.00 0.00 0.00 2.27
2519 2791 3.793819 ACCCATAAACACGTACCCTTT 57.206 42.857 0.00 0.00 0.00 3.11
2520 2792 3.793819 AACCCATAAACACGTACCCTT 57.206 42.857 0.00 0.00 0.00 3.95
2521 2793 3.793819 AAACCCATAAACACGTACCCT 57.206 42.857 0.00 0.00 0.00 4.34
2522 2794 4.270808 CGATAAACCCATAAACACGTACCC 59.729 45.833 0.00 0.00 0.00 3.69
2523 2795 4.270808 CCGATAAACCCATAAACACGTACC 59.729 45.833 0.00 0.00 0.00 3.34
2533 2805 7.117397 TGGTTTTAATGTCCGATAAACCCATA 58.883 34.615 11.30 0.00 44.41 2.74
2536 2808 5.900865 TGGTTTTAATGTCCGATAAACCC 57.099 39.130 11.30 0.00 44.41 4.11
2539 2811 9.557338 CGTTTATTGGTTTTAATGTCCGATAAA 57.443 29.630 15.20 15.20 41.43 1.40
2540 2812 8.182881 CCGTTTATTGGTTTTAATGTCCGATAA 58.817 33.333 0.00 0.00 36.43 1.75
2542 2814 6.374894 TCCGTTTATTGGTTTTAATGTCCGAT 59.625 34.615 0.00 0.00 0.00 4.18
2543 2815 5.704515 TCCGTTTATTGGTTTTAATGTCCGA 59.295 36.000 0.00 0.00 0.00 4.55
2544 2816 5.940595 TCCGTTTATTGGTTTTAATGTCCG 58.059 37.500 0.00 0.00 0.00 4.79
2545 2817 8.083462 TCTTTCCGTTTATTGGTTTTAATGTCC 58.917 33.333 0.00 0.00 0.00 4.02
2551 2823 9.069082 TCTCATTCTTTCCGTTTATTGGTTTTA 57.931 29.630 0.00 0.00 0.00 1.52
2552 2824 7.947282 TCTCATTCTTTCCGTTTATTGGTTTT 58.053 30.769 0.00 0.00 0.00 2.43
2553 2825 7.519032 TCTCATTCTTTCCGTTTATTGGTTT 57.481 32.000 0.00 0.00 0.00 3.27
2554 2826 7.447238 TCTTCTCATTCTTTCCGTTTATTGGTT 59.553 33.333 0.00 0.00 0.00 3.67
2555 2827 6.940298 TCTTCTCATTCTTTCCGTTTATTGGT 59.060 34.615 0.00 0.00 0.00 3.67
2556 2828 7.377766 TCTTCTCATTCTTTCCGTTTATTGG 57.622 36.000 0.00 0.00 0.00 3.16
2557 2829 9.282247 CATTCTTCTCATTCTTTCCGTTTATTG 57.718 33.333 0.00 0.00 0.00 1.90
2558 2830 8.462016 CCATTCTTCTCATTCTTTCCGTTTATT 58.538 33.333 0.00 0.00 0.00 1.40
2559 2831 7.829211 TCCATTCTTCTCATTCTTTCCGTTTAT 59.171 33.333 0.00 0.00 0.00 1.40
2560 2832 7.165485 TCCATTCTTCTCATTCTTTCCGTTTA 58.835 34.615 0.00 0.00 0.00 2.01
2561 2833 6.003950 TCCATTCTTCTCATTCTTTCCGTTT 58.996 36.000 0.00 0.00 0.00 3.60
2562 2834 5.560724 TCCATTCTTCTCATTCTTTCCGTT 58.439 37.500 0.00 0.00 0.00 4.44
2563 2835 5.165961 TCCATTCTTCTCATTCTTTCCGT 57.834 39.130 0.00 0.00 0.00 4.69
2564 2836 5.587844 ACATCCATTCTTCTCATTCTTTCCG 59.412 40.000 0.00 0.00 0.00 4.30
2565 2837 8.511604 TTACATCCATTCTTCTCATTCTTTCC 57.488 34.615 0.00 0.00 0.00 3.13
2566 2838 9.780413 GTTTACATCCATTCTTCTCATTCTTTC 57.220 33.333 0.00 0.00 0.00 2.62
2567 2839 9.300681 TGTTTACATCCATTCTTCTCATTCTTT 57.699 29.630 0.00 0.00 0.00 2.52
2568 2840 8.734386 GTGTTTACATCCATTCTTCTCATTCTT 58.266 33.333 0.00 0.00 0.00 2.52
2569 2841 7.065085 CGTGTTTACATCCATTCTTCTCATTCT 59.935 37.037 0.00 0.00 0.00 2.40
2570 2842 7.182761 CGTGTTTACATCCATTCTTCTCATTC 58.817 38.462 0.00 0.00 0.00 2.67
2571 2843 6.403636 GCGTGTTTACATCCATTCTTCTCATT 60.404 38.462 0.00 0.00 0.00 2.57
2572 2844 5.065218 GCGTGTTTACATCCATTCTTCTCAT 59.935 40.000 0.00 0.00 0.00 2.90
2573 2845 4.391830 GCGTGTTTACATCCATTCTTCTCA 59.608 41.667 0.00 0.00 0.00 3.27
2574 2846 4.631813 AGCGTGTTTACATCCATTCTTCTC 59.368 41.667 0.00 0.00 0.00 2.87
2575 2847 4.393062 CAGCGTGTTTACATCCATTCTTCT 59.607 41.667 0.00 0.00 0.00 2.85
2576 2848 4.154195 ACAGCGTGTTTACATCCATTCTTC 59.846 41.667 0.00 0.00 0.00 2.87
2577 2849 4.072131 ACAGCGTGTTTACATCCATTCTT 58.928 39.130 0.00 0.00 0.00 2.52
2578 2850 3.674997 ACAGCGTGTTTACATCCATTCT 58.325 40.909 0.00 0.00 0.00 2.40
2579 2851 3.435327 TGACAGCGTGTTTACATCCATTC 59.565 43.478 0.00 0.00 0.00 2.67
2580 2852 3.407698 TGACAGCGTGTTTACATCCATT 58.592 40.909 0.00 0.00 0.00 3.16
2581 2853 3.052455 TGACAGCGTGTTTACATCCAT 57.948 42.857 0.00 0.00 0.00 3.41
2582 2854 2.535012 TGACAGCGTGTTTACATCCA 57.465 45.000 0.00 0.00 0.00 3.41
2583 2855 4.158384 CAAATGACAGCGTGTTTACATCC 58.842 43.478 0.00 0.00 0.00 3.51
2584 2856 4.783242 ACAAATGACAGCGTGTTTACATC 58.217 39.130 0.00 0.00 0.00 3.06
2585 2857 4.829064 ACAAATGACAGCGTGTTTACAT 57.171 36.364 0.00 0.00 0.00 2.29
2586 2858 4.812091 AGTACAAATGACAGCGTGTTTACA 59.188 37.500 0.00 0.00 0.00 2.41
2587 2859 5.338614 AGTACAAATGACAGCGTGTTTAC 57.661 39.130 0.00 0.00 0.00 2.01
2588 2860 5.743467 CAAGTACAAATGACAGCGTGTTTA 58.257 37.500 0.00 0.00 0.00 2.01
2589 2861 4.597079 CAAGTACAAATGACAGCGTGTTT 58.403 39.130 0.00 0.00 0.00 2.83
2590 2862 3.548014 GCAAGTACAAATGACAGCGTGTT 60.548 43.478 0.00 0.00 0.00 3.32
2591 2863 2.032030 GCAAGTACAAATGACAGCGTGT 60.032 45.455 0.00 0.00 0.00 4.49
2592 2864 2.574322 GCAAGTACAAATGACAGCGTG 58.426 47.619 0.00 0.00 0.00 5.34
2593 2865 1.535462 GGCAAGTACAAATGACAGCGT 59.465 47.619 0.00 0.00 0.00 5.07
2594 2866 1.806542 AGGCAAGTACAAATGACAGCG 59.193 47.619 0.00 0.00 0.00 5.18
2595 2867 3.127030 GGTAGGCAAGTACAAATGACAGC 59.873 47.826 0.00 0.00 0.00 4.40
2596 2868 4.579869 AGGTAGGCAAGTACAAATGACAG 58.420 43.478 0.00 0.00 0.00 3.51
2597 2869 4.634012 AGGTAGGCAAGTACAAATGACA 57.366 40.909 0.00 0.00 0.00 3.58
2598 2870 5.472137 TCAAAGGTAGGCAAGTACAAATGAC 59.528 40.000 0.00 0.00 0.00 3.06
2599 2871 5.472137 GTCAAAGGTAGGCAAGTACAAATGA 59.528 40.000 0.00 0.00 0.00 2.57
2600 2872 5.240623 TGTCAAAGGTAGGCAAGTACAAATG 59.759 40.000 0.00 0.00 0.00 2.32
2601 2873 5.381757 TGTCAAAGGTAGGCAAGTACAAAT 58.618 37.500 0.00 0.00 0.00 2.32
2602 2874 4.783055 TGTCAAAGGTAGGCAAGTACAAA 58.217 39.130 0.00 0.00 0.00 2.83
2603 2875 4.425180 TGTCAAAGGTAGGCAAGTACAA 57.575 40.909 0.00 0.00 0.00 2.41
2604 2876 4.131596 GTTGTCAAAGGTAGGCAAGTACA 58.868 43.478 0.00 0.00 0.00 2.90
2605 2877 4.386711 AGTTGTCAAAGGTAGGCAAGTAC 58.613 43.478 0.00 0.00 0.00 2.73
2606 2878 4.347000 AGAGTTGTCAAAGGTAGGCAAGTA 59.653 41.667 0.00 0.00 0.00 2.24
2607 2879 3.136626 AGAGTTGTCAAAGGTAGGCAAGT 59.863 43.478 0.00 0.00 0.00 3.16
2608 2880 3.744660 AGAGTTGTCAAAGGTAGGCAAG 58.255 45.455 0.00 0.00 0.00 4.01
2609 2881 3.740115 GAGAGTTGTCAAAGGTAGGCAA 58.260 45.455 0.00 0.00 0.00 4.52
2610 2882 2.288825 CGAGAGTTGTCAAAGGTAGGCA 60.289 50.000 0.00 0.00 0.00 4.75
2611 2883 2.338500 CGAGAGTTGTCAAAGGTAGGC 58.662 52.381 0.00 0.00 0.00 3.93
2612 2884 2.288825 TGCGAGAGTTGTCAAAGGTAGG 60.289 50.000 0.00 0.00 0.00 3.18
2613 2885 2.989840 CTGCGAGAGTTGTCAAAGGTAG 59.010 50.000 0.00 0.00 0.00 3.18
2614 2886 2.626266 TCTGCGAGAGTTGTCAAAGGTA 59.374 45.455 0.00 0.00 0.00 3.08
2615 2887 1.412710 TCTGCGAGAGTTGTCAAAGGT 59.587 47.619 0.00 0.00 0.00 3.50
2616 2888 1.795286 GTCTGCGAGAGTTGTCAAAGG 59.205 52.381 0.00 0.00 0.00 3.11
2617 2889 2.748605 AGTCTGCGAGAGTTGTCAAAG 58.251 47.619 0.00 0.00 0.00 2.77
2618 2890 2.890808 AGTCTGCGAGAGTTGTCAAA 57.109 45.000 0.00 0.00 0.00 2.69
2619 2891 2.885266 AGTAGTCTGCGAGAGTTGTCAA 59.115 45.455 0.00 0.00 0.00 3.18
2628 2900 3.840890 ACTCTTTCAGTAGTCTGCGAG 57.159 47.619 0.00 0.00 41.10 5.03
2631 2903 4.632153 TCCAAACTCTTTCAGTAGTCTGC 58.368 43.478 0.00 0.00 41.10 4.26
2633 2905 7.171678 CGAAATTCCAAACTCTTTCAGTAGTCT 59.828 37.037 0.00 0.00 32.30 3.24
2663 2935 3.775261 ACTTGGTTTTAGCTACGGGAA 57.225 42.857 0.00 0.00 0.00 3.97
2674 2946 6.319405 ACGGTAATCACTACAAACTTGGTTTT 59.681 34.615 0.00 0.00 33.10 2.43
2695 2967 1.001378 GCAGCTCAATGAACAAACGGT 60.001 47.619 0.00 0.00 0.00 4.83
2696 2968 1.001487 TGCAGCTCAATGAACAAACGG 60.001 47.619 0.00 0.00 0.00 4.44
2697 2969 2.313234 CTGCAGCTCAATGAACAAACG 58.687 47.619 0.00 0.00 0.00 3.60
2698 2970 2.035066 ACCTGCAGCTCAATGAACAAAC 59.965 45.455 8.66 0.00 0.00 2.93
2744 3023 4.534500 TGTAGTTTCTTCTTATCCTGGCCA 59.466 41.667 4.71 4.71 0.00 5.36
2748 3027 9.152595 GTTACCTTGTAGTTTCTTCTTATCCTG 57.847 37.037 0.00 0.00 0.00 3.86
2750 3029 9.722184 AAGTTACCTTGTAGTTTCTTCTTATCC 57.278 33.333 0.00 0.00 0.00 2.59
2763 3042 7.871853 AGTTTGCATGTAAAGTTACCTTGTAG 58.128 34.615 9.39 0.00 32.72 2.74
2797 3076 5.446143 TTTTCGGAATTCTGCTTGCTTAA 57.554 34.783 9.58 0.00 0.00 1.85
2800 3079 2.352127 GCTTTTCGGAATTCTGCTTGCT 60.352 45.455 9.58 0.00 0.00 3.91
2805 3084 1.068333 TGCAGCTTTTCGGAATTCTGC 60.068 47.619 21.80 21.80 44.97 4.26
2814 3093 0.026803 GCGGTATCTGCAGCTTTTCG 59.973 55.000 9.47 10.05 0.00 3.46
2824 3103 0.537188 AGGTGAGGTTGCGGTATCTG 59.463 55.000 0.00 0.00 0.00 2.90
2831 3110 2.386661 AATGAGTAGGTGAGGTTGCG 57.613 50.000 0.00 0.00 0.00 4.85
2850 3131 5.504994 GCCGACATTCTCTTTGTAACAACAA 60.505 40.000 0.00 0.00 0.00 2.83
2855 3136 3.746492 ACAGCCGACATTCTCTTTGTAAC 59.254 43.478 0.00 0.00 0.00 2.50
2857 3138 3.006430 TCACAGCCGACATTCTCTTTGTA 59.994 43.478 0.00 0.00 0.00 2.41
2859 3140 2.416747 TCACAGCCGACATTCTCTTTG 58.583 47.619 0.00 0.00 0.00 2.77
2870 3151 0.032130 GCGGATCTAATCACAGCCGA 59.968 55.000 0.00 0.00 41.11 5.54
2884 3165 2.173669 CGTGAATTCAGCCGCGGAT 61.174 57.895 33.48 23.90 33.22 4.18
2890 3171 2.700773 GGGGCACGTGAATTCAGCC 61.701 63.158 22.78 22.78 44.48 4.85
2899 3180 0.391395 TAATGTTACCGGGGCACGTG 60.391 55.000 12.28 12.28 42.24 4.49
2900 3181 0.324285 TTAATGTTACCGGGGCACGT 59.676 50.000 8.94 0.00 42.24 4.49
2901 3182 1.670791 ATTAATGTTACCGGGGCACG 58.329 50.000 6.32 0.00 43.80 5.34
2914 3195 9.445786 CGGCTGTGGTTAATTAACTAATTAATG 57.554 33.333 23.89 7.29 44.88 1.90
2923 3204 2.222953 CGCTCGGCTGTGGTTAATTAAC 60.223 50.000 18.30 18.30 35.50 2.01
2925 3206 1.647346 CGCTCGGCTGTGGTTAATTA 58.353 50.000 0.00 0.00 0.00 1.40
2927 3208 1.449601 CCGCTCGGCTGTGGTTAAT 60.450 57.895 0.00 0.00 33.25 1.40
2932 3213 1.669760 TTTAACCGCTCGGCTGTGG 60.670 57.895 8.41 5.59 42.85 4.17
2933 3214 0.949105 AGTTTAACCGCTCGGCTGTG 60.949 55.000 8.41 0.00 39.32 3.66
2938 3219 2.736682 CCGCAGTTTAACCGCTCGG 61.737 63.158 6.79 6.79 42.03 4.63
2939 3220 2.736682 CCCGCAGTTTAACCGCTCG 61.737 63.158 1.75 0.00 0.00 5.03
2940 3221 0.390209 TACCCGCAGTTTAACCGCTC 60.390 55.000 1.75 0.00 0.00 5.03
2943 3224 1.728425 GAACTACCCGCAGTTTAACCG 59.272 52.381 0.00 0.00 38.86 4.44
2944 3225 2.079158 GGAACTACCCGCAGTTTAACC 58.921 52.381 0.00 0.00 38.86 2.85
2956 3237 5.129485 TGATGATCTTCTTCCTGGAACTACC 59.871 44.000 4.68 0.00 39.54 3.18
2962 3243 3.118112 GGCTTGATGATCTTCTTCCTGGA 60.118 47.826 9.75 0.00 0.00 3.86
3242 3663 6.541641 GCCTGAAACTCATATTCTGAATGTCT 59.458 38.462 13.01 0.00 32.14 3.41
3352 3783 9.132923 TCTAGCTTTTAGCATGTAGTATGTAGT 57.867 33.333 0.00 0.00 45.56 2.73
3353 3784 9.400638 GTCTAGCTTTTAGCATGTAGTATGTAG 57.599 37.037 0.00 0.00 45.56 2.74
3381 3812 2.993220 TCATTATCATGTACGGCGATGC 59.007 45.455 16.62 3.27 0.00 3.91
3383 3863 4.820897 ACATCATTATCATGTACGGCGAT 58.179 39.130 16.62 0.00 32.48 4.58
3387 3867 9.692749 AGTAAGTTACATCATTATCATGTACGG 57.307 33.333 15.28 0.00 36.63 4.02
3400 3880 5.330233 TCCTCTGGTCAGTAAGTTACATCA 58.670 41.667 15.28 1.39 0.00 3.07
3401 3881 5.916661 TCCTCTGGTCAGTAAGTTACATC 57.083 43.478 15.28 5.00 0.00 3.06
3422 3903 9.620259 ATCCTTGAAATTATCTAAGTGTCCTTC 57.380 33.333 0.00 0.00 31.89 3.46
3424 3905 7.928706 CGATCCTTGAAATTATCTAAGTGTCCT 59.071 37.037 0.00 0.00 0.00 3.85
3433 3914 6.422100 CACGACATCGATCCTTGAAATTATCT 59.578 38.462 8.54 0.00 43.02 1.98
3441 3922 0.530288 TGCACGACATCGATCCTTGA 59.470 50.000 8.54 0.00 43.02 3.02
3458 3939 3.006752 TGAAAACACCATGAATCCCTTGC 59.993 43.478 0.00 0.00 0.00 4.01
3496 3977 8.688747 AAATTGATTTGGCCATTTCTGTTTTA 57.311 26.923 6.09 0.00 0.00 1.52
3505 3986 6.117975 ACAGAGAAAATTGATTTGGCCATT 57.882 33.333 6.09 0.00 0.00 3.16
3546 4027 3.435105 TTATGGCCATTTAGCTTTGCG 57.565 42.857 26.37 0.00 0.00 4.85
3596 4629 6.127591 GGTGTTCAACTAGAGATGCTCTTAGA 60.128 42.308 1.88 0.00 41.50 2.10
3614 4647 5.045140 CCCTTAAATCCTAAGAGGGTGTTCA 60.045 44.000 0.00 0.00 41.74 3.18
3623 4656 7.672122 GGTTAGAGACCCTTAAATCCTAAGA 57.328 40.000 0.00 0.00 43.06 2.10
3638 4671 3.265995 TCTTTTGGGGATGGGTTAGAGAC 59.734 47.826 0.00 0.00 0.00 3.36
3639 4672 3.523564 CTCTTTTGGGGATGGGTTAGAGA 59.476 47.826 0.00 0.00 31.76 3.10
3641 4674 2.580783 CCTCTTTTGGGGATGGGTTAGA 59.419 50.000 0.00 0.00 45.05 2.10
3642 4675 2.311841 ACCTCTTTTGGGGATGGGTTAG 59.688 50.000 0.00 0.00 45.05 2.34
3643 4676 2.364190 ACCTCTTTTGGGGATGGGTTA 58.636 47.619 0.00 0.00 45.05 2.85
3644 4677 1.167033 ACCTCTTTTGGGGATGGGTT 58.833 50.000 0.00 0.00 45.05 4.11
3645 4678 1.923148 CTACCTCTTTTGGGGATGGGT 59.077 52.381 0.00 0.00 45.05 4.51
3646 4679 1.923148 ACTACCTCTTTTGGGGATGGG 59.077 52.381 0.00 0.00 45.05 4.00
3647 4680 2.846827 AGACTACCTCTTTTGGGGATGG 59.153 50.000 0.00 0.00 45.05 3.51
3648 4681 3.519510 TGAGACTACCTCTTTTGGGGATG 59.480 47.826 0.00 0.00 45.05 3.51
3649 4682 3.803340 TGAGACTACCTCTTTTGGGGAT 58.197 45.455 0.00 0.00 45.05 3.85
3650 4683 3.269592 TGAGACTACCTCTTTTGGGGA 57.730 47.619 0.00 0.00 45.05 4.81
3652 4685 5.880887 GGTTATTGAGACTACCTCTTTTGGG 59.119 44.000 0.00 0.00 42.44 4.12
3653 4686 6.472887 TGGTTATTGAGACTACCTCTTTTGG 58.527 40.000 0.00 0.00 42.44 3.28
3654 4687 8.567285 AATGGTTATTGAGACTACCTCTTTTG 57.433 34.615 0.00 0.00 42.44 2.44
3655 4688 9.588096 AAAATGGTTATTGAGACTACCTCTTTT 57.412 29.630 0.00 0.00 42.44 2.27
3656 4689 9.014297 CAAAATGGTTATTGAGACTACCTCTTT 57.986 33.333 0.00 0.00 42.44 2.52
3657 4690 7.611855 CCAAAATGGTTATTGAGACTACCTCTT 59.388 37.037 0.00 0.00 36.42 2.85
3658 4691 7.112779 CCAAAATGGTTATTGAGACTACCTCT 58.887 38.462 0.00 0.00 36.42 3.69
3659 4692 6.183360 GCCAAAATGGTTATTGAGACTACCTC 60.183 42.308 0.00 0.00 40.46 3.85
3660 4693 5.652452 GCCAAAATGGTTATTGAGACTACCT 59.348 40.000 0.00 0.00 40.46 3.08
3661 4694 5.163550 GGCCAAAATGGTTATTGAGACTACC 60.164 44.000 0.00 0.00 40.46 3.18
3662 4695 5.652452 AGGCCAAAATGGTTATTGAGACTAC 59.348 40.000 5.01 0.00 40.46 2.73
3663 4696 5.826643 AGGCCAAAATGGTTATTGAGACTA 58.173 37.500 5.01 0.00 40.46 2.59
3664 4697 4.677182 AGGCCAAAATGGTTATTGAGACT 58.323 39.130 5.01 0.00 40.46 3.24
3665 4698 4.462483 TGAGGCCAAAATGGTTATTGAGAC 59.538 41.667 5.01 0.00 40.46 3.36
3668 4701 4.155709 TGTGAGGCCAAAATGGTTATTGA 58.844 39.130 5.01 0.00 40.46 2.57
3672 4705 5.359194 TTTTTGTGAGGCCAAAATGGTTA 57.641 34.783 5.01 0.00 42.21 2.85
3693 4726 3.638627 CTGTTCAGAGAAAGGGGCTTTTT 59.361 43.478 0.00 0.00 33.49 1.94
3694 4727 3.117512 TCTGTTCAGAGAAAGGGGCTTTT 60.118 43.478 0.00 0.00 33.49 2.27
3695 4728 2.443255 TCTGTTCAGAGAAAGGGGCTTT 59.557 45.455 0.00 0.00 36.29 3.51
3696 4729 2.057922 TCTGTTCAGAGAAAGGGGCTT 58.942 47.619 0.00 0.00 0.00 4.35
3697 4730 1.349357 GTCTGTTCAGAGAAAGGGGCT 59.651 52.381 2.53 0.00 0.00 5.19
3698 4731 1.072331 TGTCTGTTCAGAGAAAGGGGC 59.928 52.381 2.53 0.00 0.00 5.80
3699 4732 2.289945 CCTGTCTGTTCAGAGAAAGGGG 60.290 54.545 2.64 4.38 42.10 4.79
3700 4733 3.051081 CCTGTCTGTTCAGAGAAAGGG 57.949 52.381 2.64 4.64 42.10 3.95
3701 4734 2.289945 CCCCTGTCTGTTCAGAGAAAGG 60.290 54.545 3.52 3.52 44.55 3.11
3702 4735 2.873649 GCCCCTGTCTGTTCAGAGAAAG 60.874 54.545 2.53 2.31 37.61 2.62
3703 4736 1.072331 GCCCCTGTCTGTTCAGAGAAA 59.928 52.381 2.53 0.00 37.61 2.52
3704 4737 0.687354 GCCCCTGTCTGTTCAGAGAA 59.313 55.000 2.53 0.00 37.61 2.87
3705 4738 0.471780 TGCCCCTGTCTGTTCAGAGA 60.472 55.000 2.53 1.22 37.61 3.10
3706 4739 0.397941 TTGCCCCTGTCTGTTCAGAG 59.602 55.000 2.53 0.00 37.61 3.35
3707 4740 0.843309 TTTGCCCCTGTCTGTTCAGA 59.157 50.000 0.00 0.00 37.61 3.27
3708 4741 1.815003 GATTTGCCCCTGTCTGTTCAG 59.185 52.381 0.00 0.00 35.45 3.02
3709 4742 1.144708 TGATTTGCCCCTGTCTGTTCA 59.855 47.619 0.00 0.00 0.00 3.18
3710 4743 1.909700 TGATTTGCCCCTGTCTGTTC 58.090 50.000 0.00 0.00 0.00 3.18
3711 4744 2.610438 ATGATTTGCCCCTGTCTGTT 57.390 45.000 0.00 0.00 0.00 3.16
3712 4745 2.564062 CAAATGATTTGCCCCTGTCTGT 59.436 45.455 4.82 0.00 33.36 3.41
3713 4746 2.564062 ACAAATGATTTGCCCCTGTCTG 59.436 45.455 17.19 0.00 44.39 3.51
3714 4747 2.893424 ACAAATGATTTGCCCCTGTCT 58.107 42.857 17.19 0.00 44.39 3.41
3715 4748 3.244181 ACAACAAATGATTTGCCCCTGTC 60.244 43.478 17.19 0.00 44.39 3.51
3716 4749 2.705127 ACAACAAATGATTTGCCCCTGT 59.295 40.909 17.19 12.24 44.39 4.00
3717 4750 3.405823 ACAACAAATGATTTGCCCCTG 57.594 42.857 17.19 11.68 44.39 4.45
3718 4751 5.760484 AATACAACAAATGATTTGCCCCT 57.240 34.783 17.19 0.00 44.39 4.79
3719 4752 5.704978 ACAAATACAACAAATGATTTGCCCC 59.295 36.000 17.19 0.00 44.39 5.80
3720 4753 6.799926 ACAAATACAACAAATGATTTGCCC 57.200 33.333 17.19 0.00 44.39 5.36
3721 4754 9.810231 CTAAACAAATACAACAAATGATTTGCC 57.190 29.630 17.19 0.00 44.39 4.52
3741 4774 9.645059 TGTTCAAATGAAACAATTGTCTAAACA 57.355 25.926 12.39 10.72 35.58 2.83
3864 4898 9.918630 AAATCCATTTCAACTATCTTTTGACAG 57.081 29.630 0.00 0.00 32.65 3.51
3873 4907 8.650714 GCAAACTTCAAATCCATTTCAACTATC 58.349 33.333 0.00 0.00 0.00 2.08
3874 4908 8.149647 TGCAAACTTCAAATCCATTTCAACTAT 58.850 29.630 0.00 0.00 0.00 2.12
3900 4934 7.882755 TCCTTTGATATATCCCACTTCCTTTT 58.117 34.615 10.25 0.00 0.00 2.27
3918 4952 9.470399 AACTTAACTTCCTAAACTTTCCTTTGA 57.530 29.630 0.00 0.00 0.00 2.69
3928 4962 6.964807 TCCCCAAAACTTAACTTCCTAAAC 57.035 37.500 0.00 0.00 0.00 2.01
3935 4969 7.070629 TCTAACCAATCCCCAAAACTTAACTT 58.929 34.615 0.00 0.00 0.00 2.66
3966 5000 3.509967 CCAAAAATCCGGCTTTTCTAGGT 59.490 43.478 15.88 0.00 0.00 3.08
3980 5014 5.473162 CCAAAACTTGAATCCCCCAAAAATC 59.527 40.000 0.00 0.00 0.00 2.17
3981 5015 5.384336 CCAAAACTTGAATCCCCCAAAAAT 58.616 37.500 0.00 0.00 0.00 1.82
3986 5022 1.484065 CCCCAAAACTTGAATCCCCCA 60.484 52.381 0.00 0.00 0.00 4.96
3993 5029 0.031616 AGCCACCCCCAAAACTTGAA 60.032 50.000 0.00 0.00 0.00 2.69
3995 5031 0.836606 AAAGCCACCCCCAAAACTTG 59.163 50.000 0.00 0.00 0.00 3.16
4007 5043 6.968335 TCAAAACTTAACTCGTAAAAAGCCAC 59.032 34.615 0.00 0.00 0.00 5.01
4106 5143 7.716998 AGAACAACATAGACTTTGTGTTCTCAT 59.283 33.333 22.61 12.06 39.00 2.90
4140 5177 4.641989 AGGCATATTTCTTCATCAAGCGTT 59.358 37.500 0.00 0.00 0.00 4.84
4142 5179 4.274214 TCAGGCATATTTCTTCATCAAGCG 59.726 41.667 0.00 0.00 0.00 4.68
4143 5180 5.762825 TCAGGCATATTTCTTCATCAAGC 57.237 39.130 0.00 0.00 0.00 4.01
4170 5207 6.908870 TTCGTTTCCAATATGTCTCATGAG 57.091 37.500 17.07 17.07 0.00 2.90
4172 5209 8.370493 ACTATTCGTTTCCAATATGTCTCATG 57.630 34.615 0.00 0.00 0.00 3.07
4173 5210 8.830580 CAACTATTCGTTTCCAATATGTCTCAT 58.169 33.333 0.00 0.00 32.27 2.90
4174 5211 7.822334 ACAACTATTCGTTTCCAATATGTCTCA 59.178 33.333 0.00 0.00 32.27 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.