Multiple sequence alignment - TraesCS2B01G401300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G401300 chr2B 100.000 5634 0 0 1 5634 569522119 569527752 0.000000e+00 10405.0
1 TraesCS2B01G401300 chr2B 88.448 277 25 6 1 273 486118143 486117870 1.510000e-85 327.0
2 TraesCS2B01G401300 chr2B 88.780 205 17 3 1751 1950 675339766 675339969 4.360000e-61 246.0
3 TraesCS2B01G401300 chr2B 86.977 215 23 1 1741 1950 19162011 19162225 2.620000e-58 237.0
4 TraesCS2B01G401300 chr2D 93.694 5328 239 53 345 5619 484858164 484863447 0.000000e+00 7888.0
5 TraesCS2B01G401300 chr2D 92.003 3001 201 14 2162 5141 484911785 484914767 0.000000e+00 4176.0
6 TraesCS2B01G401300 chr2D 90.636 2360 180 21 1932 4273 484882918 484885254 0.000000e+00 3096.0
7 TraesCS2B01G401300 chr2D 88.719 913 78 19 4308 5208 484885256 484886155 0.000000e+00 1092.0
8 TraesCS2B01G401300 chr2D 92.038 741 41 5 1012 1749 484882206 484882931 0.000000e+00 1026.0
9 TraesCS2B01G401300 chr2D 89.510 286 25 3 5349 5629 484915782 484916067 1.930000e-94 357.0
10 TraesCS2B01G401300 chr2D 94.241 191 10 1 1451 1641 484910924 484911113 1.990000e-74 291.0
11 TraesCS2B01G401300 chr2D 91.542 201 10 2 5124 5323 484915492 484915686 2.590000e-68 270.0
12 TraesCS2B01G401300 chr2D 88.889 162 16 2 1932 2092 484911611 484911771 1.240000e-46 198.0
13 TraesCS2B01G401300 chr2D 89.381 113 12 0 1633 1745 484911508 484911620 5.880000e-30 143.0
14 TraesCS2B01G401300 chr2A 94.037 2767 138 13 1932 4689 628745150 628747898 0.000000e+00 4170.0
15 TraesCS2B01G401300 chr2A 94.678 1428 59 4 345 1760 628743752 628745174 0.000000e+00 2200.0
16 TraesCS2B01G401300 chr2A 95.372 605 20 3 4717 5320 628747897 628748494 0.000000e+00 955.0
17 TraesCS2B01G401300 chr2A 91.118 304 22 3 5336 5634 628748639 628748942 1.890000e-109 407.0
18 TraesCS2B01G401300 chr3B 91.241 274 16 7 1 270 804348292 804348561 3.210000e-97 366.0
19 TraesCS2B01G401300 chr3B 87.065 201 18 4 1732 1924 774394191 774394391 2.640000e-53 220.0
20 TraesCS2B01G401300 chrUn 90.217 276 20 6 1 270 348808713 348808987 2.500000e-93 353.0
21 TraesCS2B01G401300 chrUn 87.425 167 14 6 113 273 289181867 289181702 9.640000e-43 185.0
22 TraesCS2B01G401300 chrUn 87.425 167 14 6 113 273 289187784 289187619 9.640000e-43 185.0
23 TraesCS2B01G401300 chrUn 92.857 84 6 0 1 84 424290666 424290749 7.670000e-24 122.0
24 TraesCS2B01G401300 chr7D 88.321 274 26 6 1 270 545338445 545338174 1.960000e-84 324.0
25 TraesCS2B01G401300 chr7B 87.912 273 24 5 2 270 497925237 497924970 4.240000e-81 313.0
26 TraesCS2B01G401300 chr7A 91.795 195 7 5 1747 1934 83784827 83785019 4.330000e-66 263.0
27 TraesCS2B01G401300 chr4D 92.350 183 9 1 1756 1933 482703625 482703443 7.240000e-64 255.0
28 TraesCS2B01G401300 chr3D 91.534 189 10 2 1757 1939 422517793 422517605 7.240000e-64 255.0
29 TraesCS2B01G401300 chr5A 89.447 199 14 3 1749 1940 664553032 664552834 1.570000e-60 244.0
30 TraesCS2B01G401300 chr3A 88.095 210 15 6 1728 1932 724319132 724318928 2.030000e-59 241.0
31 TraesCS2B01G401300 chr1D 79.008 262 33 13 14 270 248983429 248983673 5.840000e-35 159.0
32 TraesCS2B01G401300 chr4A 83.969 131 21 0 1038 1168 730153062 730153192 5.930000e-25 126.0
33 TraesCS2B01G401300 chr5B 82.400 125 22 0 1044 1168 624640711 624640587 5.970000e-20 110.0
34 TraesCS2B01G401300 chr5B 77.444 133 27 3 1038 1168 623367576 623367707 6.050000e-10 76.8
35 TraesCS2B01G401300 chr5B 77.444 133 27 3 1038 1168 627010924 627011055 6.050000e-10 76.8
36 TraesCS2B01G401300 chr5B 77.444 133 27 3 1038 1168 627885857 627885988 6.050000e-10 76.8
37 TraesCS2B01G401300 chr5B 77.099 131 27 3 1038 1166 624305174 624305303 7.830000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G401300 chr2B 569522119 569527752 5633 False 10405.000000 10405 100.000000 1 5634 1 chr2B.!!$F2 5633
1 TraesCS2B01G401300 chr2D 484858164 484863447 5283 False 7888.000000 7888 93.694000 345 5619 1 chr2D.!!$F1 5274
2 TraesCS2B01G401300 chr2D 484882206 484886155 3949 False 1738.000000 3096 90.464333 1012 5208 3 chr2D.!!$F2 4196
3 TraesCS2B01G401300 chr2D 484910924 484916067 5143 False 905.833333 4176 90.927667 1451 5629 6 chr2D.!!$F3 4178
4 TraesCS2B01G401300 chr2A 628743752 628748942 5190 False 1933.000000 4170 93.801250 345 5634 4 chr2A.!!$F1 5289

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.027979 CGCATTTATGACGTGGGCTG 59.972 55.0 0.00 0.00 0.00 4.85 F
988 1009 0.032540 CCTGGCTGCCACTTGAAAAC 59.967 55.0 19.30 0.00 0.00 2.43 F
1894 2318 0.034756 CCCGTGACCTCATGTTCACA 59.965 55.0 18.48 4.32 33.69 3.58 F
1901 2325 0.524862 CCTCATGTTCACAAGGCAGC 59.475 55.0 0.00 0.00 0.00 5.25 F
3799 4246 0.461961 ATCTCTTCCGCAGCCACTAC 59.538 55.0 0.00 0.00 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1891 2315 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33 R
2845 3292 1.197264 GTGCTCAGCTTGCTCAAGAAG 59.803 52.381 13.33 7.91 40.79 2.85 R
3082 3529 1.344763 AGCCTGTCGAAGCTGTACTTT 59.655 47.619 5.16 0.00 39.29 2.66 R
4381 4840 7.064609 GTCAATACGATCAATCTCAACTTTGGA 59.935 37.037 0.00 0.00 0.00 3.53 R
5286 6513 0.182775 CCCATTGTAGTGCCTACCCC 59.817 60.000 9.12 0.00 36.24 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.080319 CAGGAAGAAGGAAGCTTTCTGG 58.920 50.000 8.39 0.00 42.64 3.86
22 23 2.982488 AGGAAGAAGGAAGCTTTCTGGA 59.018 45.455 8.39 0.00 35.20 3.86
23 24 3.591079 AGGAAGAAGGAAGCTTTCTGGAT 59.409 43.478 8.39 0.00 35.20 3.41
24 25 3.944650 GGAAGAAGGAAGCTTTCTGGATC 59.055 47.826 8.39 6.70 35.20 3.36
25 26 4.324176 GGAAGAAGGAAGCTTTCTGGATCT 60.324 45.833 8.39 4.73 35.20 2.75
26 27 4.219264 AGAAGGAAGCTTTCTGGATCTG 57.781 45.455 8.39 0.00 33.79 2.90
27 28 3.054508 AGAAGGAAGCTTTCTGGATCTGG 60.055 47.826 8.39 0.00 33.79 3.86
28 29 2.555664 AGGAAGCTTTCTGGATCTGGA 58.444 47.619 6.42 0.00 0.00 3.86
29 30 2.915604 AGGAAGCTTTCTGGATCTGGAA 59.084 45.455 6.42 0.00 0.00 3.53
30 31 3.331889 AGGAAGCTTTCTGGATCTGGAAA 59.668 43.478 6.42 11.14 0.00 3.13
31 32 4.082125 GGAAGCTTTCTGGATCTGGAAAA 58.918 43.478 0.00 1.14 32.17 2.29
32 33 4.157472 GGAAGCTTTCTGGATCTGGAAAAG 59.843 45.833 0.00 9.22 32.17 2.27
33 34 3.694926 AGCTTTCTGGATCTGGAAAAGG 58.305 45.455 12.18 5.88 32.17 3.11
34 35 2.757314 GCTTTCTGGATCTGGAAAAGGG 59.243 50.000 12.18 5.39 32.17 3.95
35 36 3.562176 GCTTTCTGGATCTGGAAAAGGGA 60.562 47.826 12.18 0.00 32.17 4.20
36 37 4.666512 CTTTCTGGATCTGGAAAAGGGAA 58.333 43.478 12.18 0.00 32.17 3.97
37 38 4.740154 TTCTGGATCTGGAAAAGGGAAA 57.260 40.909 0.00 0.00 0.00 3.13
38 39 4.740154 TCTGGATCTGGAAAAGGGAAAA 57.260 40.909 0.00 0.00 0.00 2.29
39 40 4.407365 TCTGGATCTGGAAAAGGGAAAAC 58.593 43.478 0.00 0.00 0.00 2.43
40 41 3.506398 TGGATCTGGAAAAGGGAAAACC 58.494 45.455 0.00 0.00 40.67 3.27
41 42 2.832129 GGATCTGGAAAAGGGAAAACCC 59.168 50.000 0.00 0.00 41.63 4.11
42 43 3.502303 GGATCTGGAAAAGGGAAAACCCT 60.502 47.826 1.53 1.53 42.86 4.34
43 44 4.264217 GGATCTGGAAAAGGGAAAACCCTA 60.264 45.833 8.30 0.00 39.63 3.53
44 45 4.817874 TCTGGAAAAGGGAAAACCCTAA 57.182 40.909 8.30 0.00 39.63 2.69
45 46 4.476297 TCTGGAAAAGGGAAAACCCTAAC 58.524 43.478 8.30 3.59 39.63 2.34
46 47 4.169264 TCTGGAAAAGGGAAAACCCTAACT 59.831 41.667 8.30 0.00 39.63 2.24
47 48 4.886163 TGGAAAAGGGAAAACCCTAACTT 58.114 39.130 8.30 3.09 39.63 2.66
48 49 4.651962 TGGAAAAGGGAAAACCCTAACTTG 59.348 41.667 8.30 0.00 39.63 3.16
49 50 4.897076 GGAAAAGGGAAAACCCTAACTTGA 59.103 41.667 8.30 0.00 39.63 3.02
50 51 5.542635 GGAAAAGGGAAAACCCTAACTTGAT 59.457 40.000 8.30 0.00 39.63 2.57
51 52 6.419484 AAAAGGGAAAACCCTAACTTGATG 57.581 37.500 8.30 0.00 39.63 3.07
52 53 4.047627 AGGGAAAACCCTAACTTGATGG 57.952 45.455 5.97 0.00 41.63 3.51
53 54 3.660669 AGGGAAAACCCTAACTTGATGGA 59.339 43.478 5.97 0.00 41.63 3.41
54 55 4.017126 GGGAAAACCCTAACTTGATGGAG 58.983 47.826 0.00 0.00 34.51 3.86
55 56 4.263771 GGGAAAACCCTAACTTGATGGAGA 60.264 45.833 0.00 0.00 34.51 3.71
56 57 5.321927 GGAAAACCCTAACTTGATGGAGAA 58.678 41.667 0.00 0.00 0.00 2.87
57 58 5.416013 GGAAAACCCTAACTTGATGGAGAAG 59.584 44.000 0.00 0.00 0.00 2.85
58 59 5.843019 AAACCCTAACTTGATGGAGAAGA 57.157 39.130 0.00 0.00 0.00 2.87
59 60 5.843019 AACCCTAACTTGATGGAGAAGAA 57.157 39.130 0.00 0.00 0.00 2.52
60 61 5.428184 ACCCTAACTTGATGGAGAAGAAG 57.572 43.478 0.00 0.00 0.00 2.85
61 62 5.094387 ACCCTAACTTGATGGAGAAGAAGA 58.906 41.667 0.00 0.00 0.00 2.87
62 63 5.728741 ACCCTAACTTGATGGAGAAGAAGAT 59.271 40.000 0.00 0.00 0.00 2.40
63 64 6.054295 CCCTAACTTGATGGAGAAGAAGATG 58.946 44.000 0.00 0.00 0.00 2.90
64 65 6.054295 CCTAACTTGATGGAGAAGAAGATGG 58.946 44.000 0.00 0.00 0.00 3.51
65 66 4.500499 ACTTGATGGAGAAGAAGATGGG 57.500 45.455 0.00 0.00 0.00 4.00
66 67 3.848975 ACTTGATGGAGAAGAAGATGGGT 59.151 43.478 0.00 0.00 0.00 4.51
67 68 5.032846 ACTTGATGGAGAAGAAGATGGGTA 58.967 41.667 0.00 0.00 0.00 3.69
68 69 5.104735 ACTTGATGGAGAAGAAGATGGGTAC 60.105 44.000 0.00 0.00 0.00 3.34
69 70 4.361783 TGATGGAGAAGAAGATGGGTACA 58.638 43.478 0.00 0.00 0.00 2.90
70 71 4.162320 TGATGGAGAAGAAGATGGGTACAC 59.838 45.833 0.00 0.00 0.00 2.90
71 72 2.496070 TGGAGAAGAAGATGGGTACACG 59.504 50.000 0.00 0.00 0.00 4.49
72 73 2.159085 GGAGAAGAAGATGGGTACACGG 60.159 54.545 0.00 0.00 0.00 4.94
73 74 1.831736 AGAAGAAGATGGGTACACGGG 59.168 52.381 0.00 0.00 0.00 5.28
74 75 0.909623 AAGAAGATGGGTACACGGGG 59.090 55.000 0.00 0.00 0.00 5.73
75 76 0.981277 AGAAGATGGGTACACGGGGG 60.981 60.000 0.00 0.00 0.00 5.40
89 90 3.941131 GGGGGAAGGGGTTTGGTA 58.059 61.111 0.00 0.00 0.00 3.25
90 91 2.416787 GGGGGAAGGGGTTTGGTAT 58.583 57.895 0.00 0.00 0.00 2.73
91 92 0.260816 GGGGGAAGGGGTTTGGTATC 59.739 60.000 0.00 0.00 0.00 2.24
92 93 0.106868 GGGGAAGGGGTTTGGTATCG 60.107 60.000 0.00 0.00 0.00 2.92
93 94 0.622136 GGGAAGGGGTTTGGTATCGT 59.378 55.000 0.00 0.00 0.00 3.73
94 95 1.407851 GGGAAGGGGTTTGGTATCGTC 60.408 57.143 0.00 0.00 0.00 4.20
95 96 1.279846 GGAAGGGGTTTGGTATCGTCA 59.720 52.381 0.00 0.00 0.00 4.35
96 97 2.629051 GAAGGGGTTTGGTATCGTCAG 58.371 52.381 0.00 0.00 0.00 3.51
97 98 0.909623 AGGGGTTTGGTATCGTCAGG 59.090 55.000 0.00 0.00 0.00 3.86
98 99 0.906775 GGGGTTTGGTATCGTCAGGA 59.093 55.000 0.00 0.00 0.00 3.86
99 100 1.134491 GGGGTTTGGTATCGTCAGGAG 60.134 57.143 0.00 0.00 0.00 3.69
100 101 1.829222 GGGTTTGGTATCGTCAGGAGA 59.171 52.381 0.00 0.00 0.00 3.71
101 102 2.235402 GGGTTTGGTATCGTCAGGAGAA 59.765 50.000 0.00 0.00 0.00 2.87
102 103 3.522553 GGTTTGGTATCGTCAGGAGAAG 58.477 50.000 0.00 0.00 0.00 2.85
103 104 3.522553 GTTTGGTATCGTCAGGAGAAGG 58.477 50.000 0.00 0.00 0.00 3.46
104 105 1.776662 TGGTATCGTCAGGAGAAGGG 58.223 55.000 0.00 0.00 0.00 3.95
105 106 1.041437 GGTATCGTCAGGAGAAGGGG 58.959 60.000 0.00 0.00 0.00 4.79
106 107 1.411216 GGTATCGTCAGGAGAAGGGGA 60.411 57.143 0.00 0.00 0.00 4.81
107 108 1.682323 GTATCGTCAGGAGAAGGGGAC 59.318 57.143 0.00 0.00 0.00 4.46
108 109 2.885861 CGTCAGGAGAAGGGGACG 59.114 66.667 0.00 0.00 45.62 4.79
109 110 2.711922 CGTCAGGAGAAGGGGACGG 61.712 68.421 5.22 0.00 46.70 4.79
110 111 1.609794 GTCAGGAGAAGGGGACGGT 60.610 63.158 0.00 0.00 0.00 4.83
111 112 1.157751 TCAGGAGAAGGGGACGGTT 59.842 57.895 0.00 0.00 0.00 4.44
112 113 0.473117 TCAGGAGAAGGGGACGGTTT 60.473 55.000 0.00 0.00 0.00 3.27
113 114 0.400594 CAGGAGAAGGGGACGGTTTT 59.599 55.000 0.00 0.00 0.00 2.43
114 115 0.400594 AGGAGAAGGGGACGGTTTTG 59.599 55.000 0.00 0.00 0.00 2.44
115 116 0.608308 GGAGAAGGGGACGGTTTTGG 60.608 60.000 0.00 0.00 0.00 3.28
116 117 0.608308 GAGAAGGGGACGGTTTTGGG 60.608 60.000 0.00 0.00 0.00 4.12
117 118 1.063654 AGAAGGGGACGGTTTTGGGA 61.064 55.000 0.00 0.00 0.00 4.37
118 119 0.608308 GAAGGGGACGGTTTTGGGAG 60.608 60.000 0.00 0.00 0.00 4.30
119 120 2.035155 GGGGACGGTTTTGGGAGG 59.965 66.667 0.00 0.00 0.00 4.30
120 121 2.035155 GGGACGGTTTTGGGAGGG 59.965 66.667 0.00 0.00 0.00 4.30
121 122 2.531601 GGGACGGTTTTGGGAGGGA 61.532 63.158 0.00 0.00 0.00 4.20
122 123 1.002502 GGACGGTTTTGGGAGGGAG 60.003 63.158 0.00 0.00 0.00 4.30
123 124 1.674651 GACGGTTTTGGGAGGGAGC 60.675 63.158 0.00 0.00 0.00 4.70
124 125 2.746277 CGGTTTTGGGAGGGAGCG 60.746 66.667 0.00 0.00 0.00 5.03
125 126 2.361230 GGTTTTGGGAGGGAGCGG 60.361 66.667 0.00 0.00 0.00 5.52
126 127 2.754375 GTTTTGGGAGGGAGCGGA 59.246 61.111 0.00 0.00 0.00 5.54
127 128 1.074248 GTTTTGGGAGGGAGCGGAA 59.926 57.895 0.00 0.00 0.00 4.30
128 129 0.960861 GTTTTGGGAGGGAGCGGAAG 60.961 60.000 0.00 0.00 0.00 3.46
140 141 3.691342 CGGAAGCACGTGAGGGGA 61.691 66.667 22.23 0.00 32.68 4.81
141 142 2.266055 GGAAGCACGTGAGGGGAG 59.734 66.667 22.23 0.00 32.68 4.30
142 143 2.266055 GAAGCACGTGAGGGGAGG 59.734 66.667 22.23 0.00 32.68 4.30
143 144 3.959991 GAAGCACGTGAGGGGAGGC 62.960 68.421 22.23 0.00 32.68 4.70
155 156 4.899239 GGAGGCGCGGATCAGGTG 62.899 72.222 8.83 0.00 0.00 4.00
156 157 3.838271 GAGGCGCGGATCAGGTGA 61.838 66.667 8.83 0.00 0.00 4.02
157 158 3.781770 GAGGCGCGGATCAGGTGAG 62.782 68.421 8.83 0.00 0.00 3.51
158 159 4.899239 GGCGCGGATCAGGTGAGG 62.899 72.222 8.83 0.00 0.00 3.86
159 160 3.838271 GCGCGGATCAGGTGAGGA 61.838 66.667 8.83 0.00 0.00 3.71
160 161 2.892640 CGCGGATCAGGTGAGGAA 59.107 61.111 0.00 0.00 0.00 3.36
161 162 1.218047 CGCGGATCAGGTGAGGAAA 59.782 57.895 0.00 0.00 0.00 3.13
162 163 0.807667 CGCGGATCAGGTGAGGAAAG 60.808 60.000 0.00 0.00 0.00 2.62
163 164 1.092345 GCGGATCAGGTGAGGAAAGC 61.092 60.000 0.00 0.00 0.00 3.51
164 165 0.807667 CGGATCAGGTGAGGAAAGCG 60.808 60.000 0.00 0.00 0.00 4.68
165 166 1.092345 GGATCAGGTGAGGAAAGCGC 61.092 60.000 0.00 0.00 0.00 5.92
166 167 0.391661 GATCAGGTGAGGAAAGCGCA 60.392 55.000 11.47 0.00 0.00 6.09
167 168 0.254178 ATCAGGTGAGGAAAGCGCAT 59.746 50.000 11.47 0.00 0.00 4.73
168 169 0.036732 TCAGGTGAGGAAAGCGCATT 59.963 50.000 11.47 2.75 0.00 3.56
169 170 0.883833 CAGGTGAGGAAAGCGCATTT 59.116 50.000 11.47 7.41 0.00 2.32
170 171 2.083774 CAGGTGAGGAAAGCGCATTTA 58.916 47.619 11.47 0.00 0.00 1.40
171 172 2.684881 CAGGTGAGGAAAGCGCATTTAT 59.315 45.455 11.47 0.00 0.00 1.40
172 173 2.684881 AGGTGAGGAAAGCGCATTTATG 59.315 45.455 11.47 0.00 0.00 1.90
173 174 2.682856 GGTGAGGAAAGCGCATTTATGA 59.317 45.455 11.47 0.00 0.00 2.15
174 175 3.487544 GGTGAGGAAAGCGCATTTATGAC 60.488 47.826 11.47 0.79 0.00 3.06
175 176 2.351418 TGAGGAAAGCGCATTTATGACG 59.649 45.455 11.47 0.00 0.00 4.35
176 177 2.351726 GAGGAAAGCGCATTTATGACGT 59.648 45.455 11.47 0.00 32.61 4.34
177 178 2.095853 AGGAAAGCGCATTTATGACGTG 59.904 45.455 11.47 0.00 32.61 4.49
178 179 2.440501 GAAAGCGCATTTATGACGTGG 58.559 47.619 11.47 0.00 32.61 4.94
179 180 0.732571 AAGCGCATTTATGACGTGGG 59.267 50.000 11.47 0.00 32.61 4.61
180 181 1.298339 GCGCATTTATGACGTGGGC 60.298 57.895 0.30 0.00 43.00 5.36
181 182 1.714899 GCGCATTTATGACGTGGGCT 61.715 55.000 0.30 0.00 45.08 5.19
182 183 0.027979 CGCATTTATGACGTGGGCTG 59.972 55.000 0.00 0.00 0.00 4.85
183 184 0.381801 GCATTTATGACGTGGGCTGG 59.618 55.000 0.00 0.00 0.00 4.85
184 185 0.381801 CATTTATGACGTGGGCTGGC 59.618 55.000 0.00 0.00 0.00 4.85
185 186 0.255890 ATTTATGACGTGGGCTGGCT 59.744 50.000 0.00 0.00 0.00 4.75
186 187 0.906066 TTTATGACGTGGGCTGGCTA 59.094 50.000 0.00 0.00 0.00 3.93
187 188 0.464036 TTATGACGTGGGCTGGCTAG 59.536 55.000 0.00 0.00 0.00 3.42
188 189 0.686441 TATGACGTGGGCTGGCTAGT 60.686 55.000 0.00 0.00 0.00 2.57
189 190 1.553690 ATGACGTGGGCTGGCTAGTT 61.554 55.000 0.00 0.00 0.00 2.24
190 191 1.003718 GACGTGGGCTGGCTAGTTT 60.004 57.895 0.00 0.00 0.00 2.66
191 192 1.003718 ACGTGGGCTGGCTAGTTTC 60.004 57.895 0.00 0.00 0.00 2.78
192 193 1.745489 CGTGGGCTGGCTAGTTTCC 60.745 63.158 0.00 0.00 0.00 3.13
193 194 1.378646 GTGGGCTGGCTAGTTTCCC 60.379 63.158 4.54 4.54 37.49 3.97
194 195 1.541368 TGGGCTGGCTAGTTTCCCT 60.541 57.895 11.62 0.00 37.83 4.20
195 196 1.140134 TGGGCTGGCTAGTTTCCCTT 61.140 55.000 11.62 0.00 37.83 3.95
196 197 0.039764 GGGCTGGCTAGTTTCCCTTT 59.960 55.000 4.29 0.00 34.19 3.11
197 198 1.550179 GGGCTGGCTAGTTTCCCTTTT 60.550 52.381 4.29 0.00 34.19 2.27
198 199 2.248248 GGCTGGCTAGTTTCCCTTTTT 58.752 47.619 0.00 0.00 0.00 1.94
199 200 2.029020 GGCTGGCTAGTTTCCCTTTTTG 60.029 50.000 0.00 0.00 0.00 2.44
200 201 2.628178 GCTGGCTAGTTTCCCTTTTTGT 59.372 45.455 0.00 0.00 0.00 2.83
201 202 3.305403 GCTGGCTAGTTTCCCTTTTTGTC 60.305 47.826 0.00 0.00 0.00 3.18
202 203 2.882137 TGGCTAGTTTCCCTTTTTGTCG 59.118 45.455 0.00 0.00 0.00 4.35
203 204 2.228103 GGCTAGTTTCCCTTTTTGTCGG 59.772 50.000 0.00 0.00 0.00 4.79
204 205 2.228103 GCTAGTTTCCCTTTTTGTCGGG 59.772 50.000 0.00 0.00 42.05 5.14
208 209 3.425122 TCCCTTTTTGTCGGGAACC 57.575 52.632 0.00 0.00 46.24 3.62
228 229 8.669946 GGAACCAAAAATTTCCTTTTATGACA 57.330 30.769 0.00 0.00 38.65 3.58
229 230 8.773645 GGAACCAAAAATTTCCTTTTATGACAG 58.226 33.333 0.00 0.00 38.65 3.51
230 231 8.675705 AACCAAAAATTTCCTTTTATGACAGG 57.324 30.769 0.00 0.00 36.01 4.00
231 232 6.710295 ACCAAAAATTTCCTTTTATGACAGGC 59.290 34.615 0.00 0.00 36.01 4.85
232 233 6.936335 CCAAAAATTTCCTTTTATGACAGGCT 59.064 34.615 0.00 0.00 36.01 4.58
233 234 7.095102 CCAAAAATTTCCTTTTATGACAGGCTG 60.095 37.037 14.16 14.16 36.01 4.85
234 235 4.725790 ATTTCCTTTTATGACAGGCTGC 57.274 40.909 15.89 8.22 0.00 5.25
235 236 2.128771 TCCTTTTATGACAGGCTGCC 57.871 50.000 15.89 11.65 0.00 4.85
236 237 1.354031 TCCTTTTATGACAGGCTGCCA 59.646 47.619 22.65 10.93 0.00 4.92
237 238 1.474077 CCTTTTATGACAGGCTGCCAC 59.526 52.381 22.65 12.12 0.00 5.01
238 239 1.131126 CTTTTATGACAGGCTGCCACG 59.869 52.381 22.65 13.97 0.00 4.94
239 240 0.676466 TTTATGACAGGCTGCCACGG 60.676 55.000 22.65 12.28 0.00 4.94
240 241 2.535485 TTATGACAGGCTGCCACGGG 62.535 60.000 22.65 9.66 0.00 5.28
242 243 4.101448 GACAGGCTGCCACGGGAT 62.101 66.667 22.65 0.00 0.00 3.85
243 244 4.415150 ACAGGCTGCCACGGGATG 62.415 66.667 22.65 11.60 0.00 3.51
246 247 4.175337 GGCTGCCACGGGATGCTA 62.175 66.667 15.17 0.00 0.00 3.49
247 248 2.590007 GCTGCCACGGGATGCTAG 60.590 66.667 0.00 0.00 0.00 3.42
248 249 2.109799 CTGCCACGGGATGCTAGG 59.890 66.667 0.00 0.00 0.00 3.02
249 250 2.364973 TGCCACGGGATGCTAGGA 60.365 61.111 0.00 0.00 0.00 2.94
250 251 2.374830 CTGCCACGGGATGCTAGGAG 62.375 65.000 0.00 0.00 0.00 3.69
251 252 2.423446 CCACGGGATGCTAGGAGC 59.577 66.667 0.00 0.00 42.82 4.70
280 281 0.749649 CTCCCTAGCAGCAGTGTAGG 59.250 60.000 0.00 0.00 34.19 3.18
281 282 1.826024 CCCTAGCAGCAGTGTAGGG 59.174 63.158 9.56 9.56 45.63 3.53
282 283 1.144936 CCTAGCAGCAGTGTAGGGC 59.855 63.158 0.00 0.00 31.21 5.19
283 284 1.617018 CCTAGCAGCAGTGTAGGGCA 61.617 60.000 0.00 0.00 31.21 5.36
284 285 0.179089 CTAGCAGCAGTGTAGGGCAG 60.179 60.000 0.00 0.00 0.00 4.85
285 286 2.244117 TAGCAGCAGTGTAGGGCAGC 62.244 60.000 0.00 0.00 42.10 5.25
286 287 2.437359 CAGCAGTGTAGGGCAGCC 60.437 66.667 1.26 1.26 0.00 4.85
287 288 4.087892 AGCAGTGTAGGGCAGCCG 62.088 66.667 5.00 0.00 0.00 5.52
288 289 4.082523 GCAGTGTAGGGCAGCCGA 62.083 66.667 5.00 0.00 0.00 5.54
289 290 2.185350 CAGTGTAGGGCAGCCGAG 59.815 66.667 5.00 0.00 0.00 4.63
290 291 3.077556 AGTGTAGGGCAGCCGAGG 61.078 66.667 5.00 0.00 0.00 4.63
291 292 4.162690 GTGTAGGGCAGCCGAGGG 62.163 72.222 5.00 0.00 0.00 4.30
301 302 2.202892 GCCGAGGGCCGAAGTTAG 60.203 66.667 0.00 0.00 44.06 2.34
302 303 2.202892 CCGAGGGCCGAAGTTAGC 60.203 66.667 0.00 0.00 41.76 3.09
307 308 4.657952 GGCCGAAGTTAGCCCAAT 57.342 55.556 5.26 0.00 43.76 3.16
308 309 2.882170 GGCCGAAGTTAGCCCAATT 58.118 52.632 5.26 0.00 43.76 2.32
309 310 2.047002 GGCCGAAGTTAGCCCAATTA 57.953 50.000 5.26 0.00 43.76 1.40
310 311 1.674441 GGCCGAAGTTAGCCCAATTAC 59.326 52.381 5.26 0.00 43.76 1.89
311 312 2.640184 GCCGAAGTTAGCCCAATTACT 58.360 47.619 0.00 0.00 0.00 2.24
312 313 2.354821 GCCGAAGTTAGCCCAATTACTG 59.645 50.000 0.00 0.00 0.00 2.74
313 314 2.943033 CCGAAGTTAGCCCAATTACTGG 59.057 50.000 0.00 0.00 45.97 4.00
314 315 3.606687 CGAAGTTAGCCCAATTACTGGT 58.393 45.455 0.00 0.00 44.76 4.00
315 316 3.621715 CGAAGTTAGCCCAATTACTGGTC 59.378 47.826 0.00 0.00 44.76 4.02
316 317 3.261981 AGTTAGCCCAATTACTGGTCG 57.738 47.619 0.00 0.00 44.76 4.79
317 318 2.093128 AGTTAGCCCAATTACTGGTCGG 60.093 50.000 0.00 0.00 44.76 4.79
318 319 0.834612 TAGCCCAATTACTGGTCGGG 59.165 55.000 0.00 0.00 44.76 5.14
319 320 4.235731 CCCAATTACTGGTCGGGC 57.764 61.111 0.00 0.00 44.76 6.13
320 321 1.453197 CCCAATTACTGGTCGGGCC 60.453 63.158 0.00 0.00 44.76 5.80
321 322 1.817941 CCAATTACTGGTCGGGCCG 60.818 63.158 22.51 22.51 40.78 6.13
322 323 1.078708 CAATTACTGGTCGGGCCGT 60.079 57.895 27.32 8.74 41.21 5.68
323 324 1.087771 CAATTACTGGTCGGGCCGTC 61.088 60.000 27.32 21.00 41.21 4.79
324 325 2.567564 AATTACTGGTCGGGCCGTCG 62.568 60.000 27.32 14.57 41.21 5.12
330 331 4.974989 GTCGGGCCGTCGTGGTTT 62.975 66.667 27.32 0.00 41.21 3.27
331 332 4.973055 TCGGGCCGTCGTGGTTTG 62.973 66.667 27.32 0.00 41.21 2.93
334 335 4.025401 GGCCGTCGTGGTTTGCTG 62.025 66.667 0.00 0.00 41.21 4.41
335 336 3.276846 GCCGTCGTGGTTTGCTGT 61.277 61.111 0.00 0.00 41.21 4.40
336 337 1.957186 GCCGTCGTGGTTTGCTGTA 60.957 57.895 0.00 0.00 41.21 2.74
337 338 1.500512 GCCGTCGTGGTTTGCTGTAA 61.501 55.000 0.00 0.00 41.21 2.41
338 339 0.938713 CCGTCGTGGTTTGCTGTAAA 59.061 50.000 0.00 0.00 0.00 2.01
339 340 1.331138 CCGTCGTGGTTTGCTGTAAAA 59.669 47.619 0.00 0.00 0.00 1.52
340 341 2.223294 CCGTCGTGGTTTGCTGTAAAAA 60.223 45.455 0.00 0.00 0.00 1.94
397 406 2.049372 TGTCATCCATCCATCGTCCAT 58.951 47.619 0.00 0.00 0.00 3.41
493 502 5.946972 CGAGATTCCCATATGGACTACTACT 59.053 44.000 24.00 11.84 45.11 2.57
494 503 6.127869 CGAGATTCCCATATGGACTACTACTG 60.128 46.154 24.00 2.91 45.11 2.74
495 504 5.482175 AGATTCCCATATGGACTACTACTGC 59.518 44.000 24.00 1.47 45.11 4.40
702 711 2.281276 GCGGGGAGTGGTTTTCGT 60.281 61.111 0.00 0.00 0.00 3.85
734 744 2.100252 CGGTTTCGGCTGGAAGAGTATA 59.900 50.000 0.00 0.00 35.70 1.47
735 745 3.243771 CGGTTTCGGCTGGAAGAGTATAT 60.244 47.826 0.00 0.00 35.70 0.86
750 760 5.615289 AGAGTATATGCCATCCACAAGTTC 58.385 41.667 0.00 0.00 0.00 3.01
757 767 2.819348 GCCATCCACAAGTTCCCTTCTT 60.819 50.000 0.00 0.00 0.00 2.52
820 830 3.084039 TGGACATTTTCTCCAGACATGC 58.916 45.455 0.00 0.00 32.52 4.06
858 879 0.099968 CCTTCGCCGTACATTCTCGA 59.900 55.000 0.00 0.00 0.00 4.04
941 962 6.600427 TCTTTATAAGCTTTACCTTTTCCCCG 59.400 38.462 3.20 0.00 0.00 5.73
988 1009 0.032540 CCTGGCTGCCACTTGAAAAC 59.967 55.000 19.30 0.00 0.00 2.43
1062 1083 0.252761 TCTGCGAATGCTTGGATGGA 59.747 50.000 0.00 0.00 43.34 3.41
1149 1170 2.699954 GATCTCGACAAGGCCAAGAAA 58.300 47.619 5.01 0.00 0.00 2.52
1263 1284 0.798771 GGCGTGTCGAAGAGCTACAG 60.799 60.000 7.10 0.00 36.95 2.74
1563 1584 2.034221 GTGTGGGGTCAAGGAGGC 59.966 66.667 0.00 0.00 0.00 4.70
1661 2085 6.015180 TGCTTTCTCCAAGACTGCAATTTATT 60.015 34.615 0.00 0.00 32.38 1.40
1664 2088 5.569355 TCTCCAAGACTGCAATTTATTCCA 58.431 37.500 0.00 0.00 0.00 3.53
1884 2308 2.273912 GGACTCGAACCCGTGACCT 61.274 63.158 0.00 0.00 39.62 3.85
1887 2311 0.898789 ACTCGAACCCGTGACCTCAT 60.899 55.000 0.00 0.00 37.05 2.90
1888 2312 0.458543 CTCGAACCCGTGACCTCATG 60.459 60.000 0.00 0.00 37.05 3.07
1889 2313 1.183030 TCGAACCCGTGACCTCATGT 61.183 55.000 0.00 0.00 37.05 3.21
1890 2314 0.320421 CGAACCCGTGACCTCATGTT 60.320 55.000 0.00 0.00 0.00 2.71
1891 2315 1.439679 GAACCCGTGACCTCATGTTC 58.560 55.000 0.00 0.00 0.00 3.18
1892 2316 0.762418 AACCCGTGACCTCATGTTCA 59.238 50.000 0.00 0.00 0.00 3.18
1893 2317 0.034896 ACCCGTGACCTCATGTTCAC 59.965 55.000 12.19 12.19 0.00 3.18
1894 2318 0.034756 CCCGTGACCTCATGTTCACA 59.965 55.000 18.48 4.32 33.69 3.58
1895 2319 1.542328 CCCGTGACCTCATGTTCACAA 60.542 52.381 18.48 0.00 33.69 3.33
1896 2320 1.800586 CCGTGACCTCATGTTCACAAG 59.199 52.381 18.48 9.75 33.69 3.16
1897 2321 1.800586 CGTGACCTCATGTTCACAAGG 59.199 52.381 18.48 9.20 33.69 3.61
1898 2322 1.537202 GTGACCTCATGTTCACAAGGC 59.463 52.381 15.50 3.10 33.69 4.35
1899 2323 1.142667 TGACCTCATGTTCACAAGGCA 59.857 47.619 0.00 0.00 29.05 4.75
1900 2324 1.808945 GACCTCATGTTCACAAGGCAG 59.191 52.381 0.00 0.00 29.05 4.85
1901 2325 0.524862 CCTCATGTTCACAAGGCAGC 59.475 55.000 0.00 0.00 0.00 5.25
1902 2326 1.241165 CTCATGTTCACAAGGCAGCA 58.759 50.000 0.00 0.00 0.00 4.41
1903 2327 1.199327 CTCATGTTCACAAGGCAGCAG 59.801 52.381 0.00 0.00 0.00 4.24
1927 2351 2.979676 CGCTGTGCCAAGGCTTCA 60.980 61.111 12.96 10.38 42.51 3.02
1945 2369 8.197988 AGGCTTCACTTCTTATATTTGTAACG 57.802 34.615 0.00 0.00 0.00 3.18
2068 2493 6.479001 GTGCACTGAAGTAGTTAAGTCTGAAA 59.521 38.462 10.32 0.00 37.60 2.69
2157 2589 7.137490 TCAGCATGAGAATTTGACTAGTTTG 57.863 36.000 0.00 0.00 42.56 2.93
2189 2621 8.671384 TTATAGGTGCACATTAACCAATAGAC 57.329 34.615 20.43 0.00 39.05 2.59
2241 2674 5.512753 TGCAATTAGTGTGTGTCATTTGT 57.487 34.783 0.00 0.00 0.00 2.83
2262 2695 6.633500 TGTTGTTTTCCACAAGATCCTTAG 57.367 37.500 0.00 0.00 46.49 2.18
2403 2844 2.555757 GGCACATCTTTGCTTGACTCTT 59.444 45.455 0.00 0.00 42.56 2.85
2704 3151 4.019771 AGGAAGAAATTCTGTCTGGAGGAC 60.020 45.833 0.00 0.00 44.70 3.85
2845 3292 4.276926 GGTAATGATGCTTCATGGGAACTC 59.723 45.833 15.21 2.84 41.83 3.01
3082 3529 4.216687 GTGGATGAAATGTTTGGTCGGTTA 59.783 41.667 0.00 0.00 0.00 2.85
3799 4246 0.461961 ATCTCTTCCGCAGCCACTAC 59.538 55.000 0.00 0.00 0.00 2.73
4381 4840 0.839946 ACACAGGGCAGAGTGACTTT 59.160 50.000 9.66 0.00 39.03 2.66
4639 5098 7.453393 AGTACTTCATTCCAATCTGACAGAAA 58.547 34.615 9.70 0.00 0.00 2.52
4683 5142 0.890683 GCATGCAGGTGGCTTAGTTT 59.109 50.000 14.21 0.00 45.15 2.66
4805 5270 8.570068 TCGTGTATATGGTATACTCTGCAATA 57.430 34.615 2.25 0.00 0.00 1.90
4979 5446 5.473504 TCAAGATTTGAGCCAAACCTTAGAC 59.526 40.000 6.88 0.00 35.26 2.59
5096 5563 7.855904 CGCTGGTTGGATTATATTTGAAGTAAC 59.144 37.037 0.00 0.00 0.00 2.50
5122 5589 8.915654 CAAATGGCTTCAACATTTCTAGTTTAC 58.084 33.333 0.00 0.00 44.29 2.01
5220 6446 6.016192 CAGCATTCAGAATCTAAGATGGCATT 60.016 38.462 0.00 0.00 0.00 3.56
5222 6448 7.069578 AGCATTCAGAATCTAAGATGGCATTTT 59.930 33.333 8.42 8.42 0.00 1.82
5231 6457 7.031226 TCTAAGATGGCATTTTAAGTGCATC 57.969 36.000 14.05 13.33 44.25 3.91
5232 6458 4.660789 AGATGGCATTTTAAGTGCATCC 57.339 40.909 14.05 2.66 44.25 3.51
5233 6459 2.937469 TGGCATTTTAAGTGCATCCG 57.063 45.000 14.05 0.00 44.25 4.18
5234 6460 2.441410 TGGCATTTTAAGTGCATCCGA 58.559 42.857 14.05 0.00 44.25 4.55
5235 6461 2.822561 TGGCATTTTAAGTGCATCCGAA 59.177 40.909 14.05 0.00 44.25 4.30
5236 6462 3.256879 TGGCATTTTAAGTGCATCCGAAA 59.743 39.130 14.05 0.00 44.25 3.46
5273 6500 6.069847 AGGCATTTGGATTGGAAAATGATCTT 60.070 34.615 11.27 0.00 43.41 2.40
5286 6513 5.551760 AAATGATCTTAGTTCCAGTTGCG 57.448 39.130 0.00 0.00 0.00 4.85
5292 6520 0.899720 TAGTTCCAGTTGCGGGGTAG 59.100 55.000 0.00 0.00 0.00 3.18
5293 6521 1.376812 GTTCCAGTTGCGGGGTAGG 60.377 63.158 0.00 0.00 0.00 3.18
5309 6537 4.242602 GGCACTACAATGGGCCTC 57.757 61.111 4.53 0.00 43.09 4.70
5330 6712 6.183361 GCCTCCTATTTCTTATTTGGTAGGGA 60.183 42.308 0.00 0.00 31.73 4.20
5331 6713 7.639534 GCCTCCTATTTCTTATTTGGTAGGGAA 60.640 40.741 0.00 0.00 31.73 3.97
5332 6714 8.448816 CCTCCTATTTCTTATTTGGTAGGGAAT 58.551 37.037 0.00 0.00 31.73 3.01
5376 6782 1.202952 AGGTATTGCCGTTGTCCCAAA 60.203 47.619 0.00 0.00 43.70 3.28
5392 6798 5.073428 GTCCCAAATTCTGTTCCTTCTCTT 58.927 41.667 0.00 0.00 0.00 2.85
5406 6812 7.657761 TGTTCCTTCTCTTCTTTAATGTCAGAC 59.342 37.037 0.00 0.00 0.00 3.51
5407 6813 6.390721 TCCTTCTCTTCTTTAATGTCAGACG 58.609 40.000 0.00 0.00 0.00 4.18
5415 6826 9.745880 TCTTCTTTAATGTCAGACGGATTATAC 57.254 33.333 0.00 0.00 0.00 1.47
5513 6925 7.472543 CCAGCGTTTTTCTTTAGCAGTAATAT 58.527 34.615 0.00 0.00 0.00 1.28
5545 6957 9.607988 TTAACTCCATCGATATGTTGTATGTTT 57.392 29.630 15.52 0.00 0.00 2.83
5559 6971 9.959721 ATGTTGTATGTTTTATCTCCTGTTACT 57.040 29.630 0.00 0.00 0.00 2.24
5560 6972 9.214957 TGTTGTATGTTTTATCTCCTGTTACTG 57.785 33.333 0.00 0.00 0.00 2.74
5566 6978 8.335532 TGTTTTATCTCCTGTTACTGGAATTG 57.664 34.615 11.95 1.66 31.33 2.32
5598 7012 3.516981 TCAGCATCTGTTCTCAGTAGC 57.483 47.619 0.00 0.00 41.91 3.58
5629 7043 2.493278 GTTGGTCATACTTTGCAGGCAT 59.507 45.455 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.080319 CCAGAAAGCTTCCTTCTTCCTG 58.920 50.000 0.00 0.00 0.00 3.86
2 3 3.425162 TCCAGAAAGCTTCCTTCTTCC 57.575 47.619 0.00 0.00 0.00 3.46
5 6 3.054508 CCAGATCCAGAAAGCTTCCTTCT 60.055 47.826 0.00 0.00 0.00 2.85
7 8 2.915604 TCCAGATCCAGAAAGCTTCCTT 59.084 45.455 0.00 0.00 0.00 3.36
8 9 2.555664 TCCAGATCCAGAAAGCTTCCT 58.444 47.619 0.00 0.00 0.00 3.36
9 10 3.356529 TTCCAGATCCAGAAAGCTTCC 57.643 47.619 0.00 0.00 0.00 3.46
10 11 4.157472 CCTTTTCCAGATCCAGAAAGCTTC 59.843 45.833 0.00 0.00 33.75 3.86
11 12 4.085009 CCTTTTCCAGATCCAGAAAGCTT 58.915 43.478 0.00 0.00 33.75 3.74
12 13 3.563043 CCCTTTTCCAGATCCAGAAAGCT 60.563 47.826 7.57 0.00 33.75 3.74
13 14 2.757314 CCCTTTTCCAGATCCAGAAAGC 59.243 50.000 7.57 0.00 33.75 3.51
14 15 4.307032 TCCCTTTTCCAGATCCAGAAAG 57.693 45.455 7.57 5.18 33.75 2.62
15 16 4.740154 TTCCCTTTTCCAGATCCAGAAA 57.260 40.909 4.13 4.13 0.00 2.52
16 17 4.740154 TTTCCCTTTTCCAGATCCAGAA 57.260 40.909 0.00 0.00 0.00 3.02
17 18 4.407365 GTTTTCCCTTTTCCAGATCCAGA 58.593 43.478 0.00 0.00 0.00 3.86
18 19 3.511540 GGTTTTCCCTTTTCCAGATCCAG 59.488 47.826 0.00 0.00 0.00 3.86
19 20 3.506398 GGTTTTCCCTTTTCCAGATCCA 58.494 45.455 0.00 0.00 0.00 3.41
33 34 4.918588 TCTCCATCAAGTTAGGGTTTTCC 58.081 43.478 0.00 0.00 39.75 3.13
34 35 6.238648 TCTTCTCCATCAAGTTAGGGTTTTC 58.761 40.000 0.00 0.00 0.00 2.29
35 36 6.200878 TCTTCTCCATCAAGTTAGGGTTTT 57.799 37.500 0.00 0.00 0.00 2.43
36 37 5.843019 TCTTCTCCATCAAGTTAGGGTTT 57.157 39.130 0.00 0.00 0.00 3.27
37 38 5.548056 TCTTCTTCTCCATCAAGTTAGGGTT 59.452 40.000 0.00 0.00 0.00 4.11
38 39 5.094387 TCTTCTTCTCCATCAAGTTAGGGT 58.906 41.667 0.00 0.00 0.00 4.34
39 40 5.683876 TCTTCTTCTCCATCAAGTTAGGG 57.316 43.478 0.00 0.00 0.00 3.53
40 41 6.054295 CCATCTTCTTCTCCATCAAGTTAGG 58.946 44.000 0.00 0.00 0.00 2.69
41 42 6.054295 CCCATCTTCTTCTCCATCAAGTTAG 58.946 44.000 0.00 0.00 0.00 2.34
42 43 5.488919 ACCCATCTTCTTCTCCATCAAGTTA 59.511 40.000 0.00 0.00 0.00 2.24
43 44 4.290722 ACCCATCTTCTTCTCCATCAAGTT 59.709 41.667 0.00 0.00 0.00 2.66
44 45 3.848975 ACCCATCTTCTTCTCCATCAAGT 59.151 43.478 0.00 0.00 0.00 3.16
45 46 4.500499 ACCCATCTTCTTCTCCATCAAG 57.500 45.455 0.00 0.00 0.00 3.02
46 47 4.782691 TGTACCCATCTTCTTCTCCATCAA 59.217 41.667 0.00 0.00 0.00 2.57
47 48 4.162320 GTGTACCCATCTTCTTCTCCATCA 59.838 45.833 0.00 0.00 0.00 3.07
48 49 4.698575 GTGTACCCATCTTCTTCTCCATC 58.301 47.826 0.00 0.00 0.00 3.51
49 50 3.133003 CGTGTACCCATCTTCTTCTCCAT 59.867 47.826 0.00 0.00 0.00 3.41
50 51 2.496070 CGTGTACCCATCTTCTTCTCCA 59.504 50.000 0.00 0.00 0.00 3.86
51 52 2.159085 CCGTGTACCCATCTTCTTCTCC 60.159 54.545 0.00 0.00 0.00 3.71
52 53 2.159085 CCCGTGTACCCATCTTCTTCTC 60.159 54.545 0.00 0.00 0.00 2.87
53 54 1.831736 CCCGTGTACCCATCTTCTTCT 59.168 52.381 0.00 0.00 0.00 2.85
54 55 1.134491 CCCCGTGTACCCATCTTCTTC 60.134 57.143 0.00 0.00 0.00 2.87
55 56 0.909623 CCCCGTGTACCCATCTTCTT 59.090 55.000 0.00 0.00 0.00 2.52
56 57 0.981277 CCCCCGTGTACCCATCTTCT 60.981 60.000 0.00 0.00 0.00 2.85
57 58 1.525442 CCCCCGTGTACCCATCTTC 59.475 63.158 0.00 0.00 0.00 2.87
58 59 3.735725 CCCCCGTGTACCCATCTT 58.264 61.111 0.00 0.00 0.00 2.40
72 73 0.260816 GATACCAAACCCCTTCCCCC 59.739 60.000 0.00 0.00 0.00 5.40
73 74 0.106868 CGATACCAAACCCCTTCCCC 60.107 60.000 0.00 0.00 0.00 4.81
74 75 0.622136 ACGATACCAAACCCCTTCCC 59.378 55.000 0.00 0.00 0.00 3.97
75 76 1.279846 TGACGATACCAAACCCCTTCC 59.720 52.381 0.00 0.00 0.00 3.46
76 77 2.629051 CTGACGATACCAAACCCCTTC 58.371 52.381 0.00 0.00 0.00 3.46
77 78 1.280998 CCTGACGATACCAAACCCCTT 59.719 52.381 0.00 0.00 0.00 3.95
78 79 0.909623 CCTGACGATACCAAACCCCT 59.090 55.000 0.00 0.00 0.00 4.79
79 80 0.906775 TCCTGACGATACCAAACCCC 59.093 55.000 0.00 0.00 0.00 4.95
80 81 1.829222 TCTCCTGACGATACCAAACCC 59.171 52.381 0.00 0.00 0.00 4.11
81 82 3.522553 CTTCTCCTGACGATACCAAACC 58.477 50.000 0.00 0.00 0.00 3.27
82 83 3.522553 CCTTCTCCTGACGATACCAAAC 58.477 50.000 0.00 0.00 0.00 2.93
83 84 2.500098 CCCTTCTCCTGACGATACCAAA 59.500 50.000 0.00 0.00 0.00 3.28
84 85 2.108168 CCCTTCTCCTGACGATACCAA 58.892 52.381 0.00 0.00 0.00 3.67
85 86 1.688311 CCCCTTCTCCTGACGATACCA 60.688 57.143 0.00 0.00 0.00 3.25
86 87 1.041437 CCCCTTCTCCTGACGATACC 58.959 60.000 0.00 0.00 0.00 2.73
87 88 1.682323 GTCCCCTTCTCCTGACGATAC 59.318 57.143 0.00 0.00 0.00 2.24
88 89 2.068834 GTCCCCTTCTCCTGACGATA 57.931 55.000 0.00 0.00 0.00 2.92
89 90 2.903404 GTCCCCTTCTCCTGACGAT 58.097 57.895 0.00 0.00 0.00 3.73
90 91 4.436368 GTCCCCTTCTCCTGACGA 57.564 61.111 0.00 0.00 0.00 4.20
91 92 2.885861 CGTCCCCTTCTCCTGACG 59.114 66.667 0.00 0.00 43.64 4.35
92 93 1.192803 AACCGTCCCCTTCTCCTGAC 61.193 60.000 0.00 0.00 0.00 3.51
93 94 0.473117 AAACCGTCCCCTTCTCCTGA 60.473 55.000 0.00 0.00 0.00 3.86
94 95 0.400594 AAAACCGTCCCCTTCTCCTG 59.599 55.000 0.00 0.00 0.00 3.86
95 96 0.400594 CAAAACCGTCCCCTTCTCCT 59.599 55.000 0.00 0.00 0.00 3.69
96 97 0.608308 CCAAAACCGTCCCCTTCTCC 60.608 60.000 0.00 0.00 0.00 3.71
97 98 0.608308 CCCAAAACCGTCCCCTTCTC 60.608 60.000 0.00 0.00 0.00 2.87
98 99 1.063654 TCCCAAAACCGTCCCCTTCT 61.064 55.000 0.00 0.00 0.00 2.85
99 100 0.608308 CTCCCAAAACCGTCCCCTTC 60.608 60.000 0.00 0.00 0.00 3.46
100 101 1.458927 CTCCCAAAACCGTCCCCTT 59.541 57.895 0.00 0.00 0.00 3.95
101 102 2.535331 CCTCCCAAAACCGTCCCCT 61.535 63.158 0.00 0.00 0.00 4.79
102 103 2.035155 CCTCCCAAAACCGTCCCC 59.965 66.667 0.00 0.00 0.00 4.81
103 104 2.035155 CCCTCCCAAAACCGTCCC 59.965 66.667 0.00 0.00 0.00 4.46
104 105 1.002502 CTCCCTCCCAAAACCGTCC 60.003 63.158 0.00 0.00 0.00 4.79
105 106 1.674651 GCTCCCTCCCAAAACCGTC 60.675 63.158 0.00 0.00 0.00 4.79
106 107 2.434774 GCTCCCTCCCAAAACCGT 59.565 61.111 0.00 0.00 0.00 4.83
107 108 2.746277 CGCTCCCTCCCAAAACCG 60.746 66.667 0.00 0.00 0.00 4.44
108 109 2.361230 CCGCTCCCTCCCAAAACC 60.361 66.667 0.00 0.00 0.00 3.27
109 110 0.960861 CTTCCGCTCCCTCCCAAAAC 60.961 60.000 0.00 0.00 0.00 2.43
110 111 1.378762 CTTCCGCTCCCTCCCAAAA 59.621 57.895 0.00 0.00 0.00 2.44
111 112 3.077907 CTTCCGCTCCCTCCCAAA 58.922 61.111 0.00 0.00 0.00 3.28
112 113 3.717294 GCTTCCGCTCCCTCCCAA 61.717 66.667 0.00 0.00 0.00 4.12
114 115 4.475135 GTGCTTCCGCTCCCTCCC 62.475 72.222 0.00 0.00 36.97 4.30
115 116 4.821589 CGTGCTTCCGCTCCCTCC 62.822 72.222 0.00 0.00 36.97 4.30
116 117 4.070552 ACGTGCTTCCGCTCCCTC 62.071 66.667 0.00 0.00 36.97 4.30
117 118 4.379243 CACGTGCTTCCGCTCCCT 62.379 66.667 0.82 0.00 36.97 4.20
118 119 4.373116 TCACGTGCTTCCGCTCCC 62.373 66.667 11.67 0.00 36.97 4.30
119 120 2.811317 CTCACGTGCTTCCGCTCC 60.811 66.667 11.67 0.00 36.97 4.70
120 121 2.811317 CCTCACGTGCTTCCGCTC 60.811 66.667 11.67 0.00 36.97 5.03
121 122 4.379243 CCCTCACGTGCTTCCGCT 62.379 66.667 11.67 0.00 36.97 5.52
123 124 3.649277 CTCCCCTCACGTGCTTCCG 62.649 68.421 11.67 0.00 0.00 4.30
124 125 2.266055 CTCCCCTCACGTGCTTCC 59.734 66.667 11.67 0.00 0.00 3.46
125 126 2.266055 CCTCCCCTCACGTGCTTC 59.734 66.667 11.67 0.00 0.00 3.86
126 127 4.021925 GCCTCCCCTCACGTGCTT 62.022 66.667 11.67 0.00 0.00 3.91
138 139 4.899239 CACCTGATCCGCGCCTCC 62.899 72.222 0.00 0.00 0.00 4.30
139 140 3.781770 CTCACCTGATCCGCGCCTC 62.782 68.421 0.00 0.00 0.00 4.70
140 141 3.842923 CTCACCTGATCCGCGCCT 61.843 66.667 0.00 0.00 0.00 5.52
141 142 4.899239 CCTCACCTGATCCGCGCC 62.899 72.222 0.00 0.00 0.00 6.53
142 143 2.852495 TTTCCTCACCTGATCCGCGC 62.852 60.000 0.00 0.00 0.00 6.86
143 144 0.807667 CTTTCCTCACCTGATCCGCG 60.808 60.000 0.00 0.00 0.00 6.46
144 145 1.092345 GCTTTCCTCACCTGATCCGC 61.092 60.000 0.00 0.00 0.00 5.54
145 146 0.807667 CGCTTTCCTCACCTGATCCG 60.808 60.000 0.00 0.00 0.00 4.18
146 147 1.092345 GCGCTTTCCTCACCTGATCC 61.092 60.000 0.00 0.00 0.00 3.36
147 148 0.391661 TGCGCTTTCCTCACCTGATC 60.392 55.000 9.73 0.00 0.00 2.92
148 149 0.254178 ATGCGCTTTCCTCACCTGAT 59.746 50.000 9.73 0.00 0.00 2.90
149 150 0.036732 AATGCGCTTTCCTCACCTGA 59.963 50.000 9.73 0.00 0.00 3.86
150 151 0.883833 AAATGCGCTTTCCTCACCTG 59.116 50.000 9.73 0.00 0.00 4.00
151 152 2.489938 TAAATGCGCTTTCCTCACCT 57.510 45.000 9.73 0.00 0.00 4.00
152 153 2.682856 TCATAAATGCGCTTTCCTCACC 59.317 45.455 9.73 0.00 0.00 4.02
153 154 3.685058 GTCATAAATGCGCTTTCCTCAC 58.315 45.455 9.73 0.92 0.00 3.51
154 155 2.351418 CGTCATAAATGCGCTTTCCTCA 59.649 45.455 9.73 0.00 0.00 3.86
155 156 2.351726 ACGTCATAAATGCGCTTTCCTC 59.648 45.455 9.73 0.00 33.04 3.71
156 157 2.095853 CACGTCATAAATGCGCTTTCCT 59.904 45.455 9.73 0.00 33.04 3.36
157 158 2.440501 CACGTCATAAATGCGCTTTCC 58.559 47.619 9.73 0.00 33.04 3.13
158 159 2.440501 CCACGTCATAAATGCGCTTTC 58.559 47.619 9.73 0.00 33.04 2.62
159 160 1.132262 CCCACGTCATAAATGCGCTTT 59.868 47.619 9.73 5.65 33.04 3.51
160 161 0.732571 CCCACGTCATAAATGCGCTT 59.267 50.000 9.73 0.00 33.04 4.68
161 162 1.714899 GCCCACGTCATAAATGCGCT 61.715 55.000 9.73 0.00 33.04 5.92
162 163 1.298339 GCCCACGTCATAAATGCGC 60.298 57.895 0.00 0.00 33.04 6.09
163 164 0.027979 CAGCCCACGTCATAAATGCG 59.972 55.000 0.00 5.60 34.89 4.73
164 165 0.381801 CCAGCCCACGTCATAAATGC 59.618 55.000 0.00 0.00 0.00 3.56
165 166 0.381801 GCCAGCCCACGTCATAAATG 59.618 55.000 0.00 0.00 0.00 2.32
166 167 0.255890 AGCCAGCCCACGTCATAAAT 59.744 50.000 0.00 0.00 0.00 1.40
167 168 0.906066 TAGCCAGCCCACGTCATAAA 59.094 50.000 0.00 0.00 0.00 1.40
168 169 0.464036 CTAGCCAGCCCACGTCATAA 59.536 55.000 0.00 0.00 0.00 1.90
169 170 0.686441 ACTAGCCAGCCCACGTCATA 60.686 55.000 0.00 0.00 0.00 2.15
170 171 1.553690 AACTAGCCAGCCCACGTCAT 61.554 55.000 0.00 0.00 0.00 3.06
171 172 1.764571 AAACTAGCCAGCCCACGTCA 61.765 55.000 0.00 0.00 0.00 4.35
172 173 1.003718 AAACTAGCCAGCCCACGTC 60.004 57.895 0.00 0.00 0.00 4.34
173 174 1.003718 GAAACTAGCCAGCCCACGT 60.004 57.895 0.00 0.00 0.00 4.49
174 175 1.745489 GGAAACTAGCCAGCCCACG 60.745 63.158 0.00 0.00 0.00 4.94
175 176 1.378646 GGGAAACTAGCCAGCCCAC 60.379 63.158 0.00 0.00 38.68 4.61
176 177 1.140134 AAGGGAAACTAGCCAGCCCA 61.140 55.000 11.70 0.00 41.34 5.36
177 178 0.039764 AAAGGGAAACTAGCCAGCCC 59.960 55.000 0.00 0.00 39.12 5.19
178 179 1.924731 AAAAGGGAAACTAGCCAGCC 58.075 50.000 0.00 0.00 0.00 4.85
179 180 2.628178 ACAAAAAGGGAAACTAGCCAGC 59.372 45.455 0.00 0.00 0.00 4.85
180 181 3.058224 CGACAAAAAGGGAAACTAGCCAG 60.058 47.826 0.00 0.00 0.00 4.85
181 182 2.882137 CGACAAAAAGGGAAACTAGCCA 59.118 45.455 0.00 0.00 0.00 4.75
182 183 2.228103 CCGACAAAAAGGGAAACTAGCC 59.772 50.000 0.00 0.00 0.00 3.93
183 184 3.554259 CCGACAAAAAGGGAAACTAGC 57.446 47.619 0.00 0.00 0.00 3.42
191 192 3.369576 TTTTTGGTTCCCGACAAAAAGGG 60.370 43.478 10.24 0.00 45.95 3.95
192 193 3.528597 TTTTGGTTCCCGACAAAAAGG 57.471 42.857 0.00 0.00 41.87 3.11
195 196 4.876679 GGAAATTTTTGGTTCCCGACAAAA 59.123 37.500 0.00 0.00 42.76 2.44
196 197 4.162509 AGGAAATTTTTGGTTCCCGACAAA 59.837 37.500 0.00 0.00 35.01 2.83
197 198 3.707102 AGGAAATTTTTGGTTCCCGACAA 59.293 39.130 0.00 0.00 34.20 3.18
198 199 3.301274 AGGAAATTTTTGGTTCCCGACA 58.699 40.909 0.00 0.00 34.20 4.35
199 200 4.330944 AAGGAAATTTTTGGTTCCCGAC 57.669 40.909 0.00 0.00 34.20 4.79
200 201 5.360649 AAAAGGAAATTTTTGGTTCCCGA 57.639 34.783 0.00 0.00 37.89 5.14
201 202 6.931840 TCATAAAAGGAAATTTTTGGTTCCCG 59.068 34.615 0.00 0.00 41.40 5.14
202 203 7.717436 TGTCATAAAAGGAAATTTTTGGTTCCC 59.283 33.333 0.00 0.00 41.40 3.97
203 204 8.669946 TGTCATAAAAGGAAATTTTTGGTTCC 57.330 30.769 0.00 0.00 41.40 3.62
204 205 8.773645 CCTGTCATAAAAGGAAATTTTTGGTTC 58.226 33.333 0.00 0.00 41.40 3.62
205 206 7.228507 GCCTGTCATAAAAGGAAATTTTTGGTT 59.771 33.333 0.00 0.00 41.40 3.67
206 207 6.710295 GCCTGTCATAAAAGGAAATTTTTGGT 59.290 34.615 0.00 0.00 41.40 3.67
207 208 6.936335 AGCCTGTCATAAAAGGAAATTTTTGG 59.064 34.615 0.00 0.00 41.40 3.28
208 209 7.571798 GCAGCCTGTCATAAAAGGAAATTTTTG 60.572 37.037 0.00 0.00 41.40 2.44
209 210 6.427853 GCAGCCTGTCATAAAAGGAAATTTTT 59.572 34.615 0.00 0.00 41.40 1.94
210 211 5.934043 GCAGCCTGTCATAAAAGGAAATTTT 59.066 36.000 0.00 0.00 43.54 1.82
211 212 5.482006 GCAGCCTGTCATAAAAGGAAATTT 58.518 37.500 0.00 0.00 35.40 1.82
212 213 4.081476 GGCAGCCTGTCATAAAAGGAAATT 60.081 41.667 3.29 0.00 35.40 1.82
213 214 3.448660 GGCAGCCTGTCATAAAAGGAAAT 59.551 43.478 3.29 0.00 35.40 2.17
214 215 2.825532 GGCAGCCTGTCATAAAAGGAAA 59.174 45.455 3.29 0.00 35.40 3.13
215 216 2.224992 TGGCAGCCTGTCATAAAAGGAA 60.225 45.455 14.15 0.00 35.40 3.36
216 217 1.354031 TGGCAGCCTGTCATAAAAGGA 59.646 47.619 14.15 0.00 35.40 3.36
217 218 1.474077 GTGGCAGCCTGTCATAAAAGG 59.526 52.381 14.15 0.00 33.03 3.11
218 219 1.131126 CGTGGCAGCCTGTCATAAAAG 59.869 52.381 14.15 0.00 33.03 2.27
219 220 1.164411 CGTGGCAGCCTGTCATAAAA 58.836 50.000 14.15 0.00 33.03 1.52
220 221 0.676466 CCGTGGCAGCCTGTCATAAA 60.676 55.000 14.15 0.00 33.03 1.40
221 222 1.078497 CCGTGGCAGCCTGTCATAA 60.078 57.895 14.15 0.00 33.03 1.90
222 223 2.584064 CCGTGGCAGCCTGTCATA 59.416 61.111 14.15 0.00 33.03 2.15
223 224 4.415150 CCCGTGGCAGCCTGTCAT 62.415 66.667 14.15 0.00 33.03 3.06
225 226 4.101448 ATCCCGTGGCAGCCTGTC 62.101 66.667 14.15 2.37 0.00 3.51
226 227 4.415150 CATCCCGTGGCAGCCTGT 62.415 66.667 14.15 0.00 0.00 4.00
229 230 4.175337 TAGCATCCCGTGGCAGCC 62.175 66.667 3.66 3.66 0.00 4.85
230 231 2.590007 CTAGCATCCCGTGGCAGC 60.590 66.667 0.00 0.00 0.00 5.25
231 232 2.109799 CCTAGCATCCCGTGGCAG 59.890 66.667 0.00 0.00 0.00 4.85
232 233 2.364973 TCCTAGCATCCCGTGGCA 60.365 61.111 0.00 0.00 0.00 4.92
233 234 2.423446 CTCCTAGCATCCCGTGGC 59.577 66.667 0.00 0.00 0.00 5.01
234 235 2.423446 GCTCCTAGCATCCCGTGG 59.577 66.667 0.00 0.00 41.89 4.94
261 262 0.749649 CCTACACTGCTGCTAGGGAG 59.250 60.000 0.00 0.00 0.00 4.30
262 263 2.901975 CCTACACTGCTGCTAGGGA 58.098 57.895 0.00 0.00 0.00 4.20
263 264 1.826024 CCCTACACTGCTGCTAGGG 59.174 63.158 14.99 14.99 40.68 3.53
264 265 1.144936 GCCCTACACTGCTGCTAGG 59.855 63.158 0.00 3.43 0.00 3.02
265 266 0.179089 CTGCCCTACACTGCTGCTAG 60.179 60.000 0.00 0.00 0.00 3.42
266 267 1.900351 CTGCCCTACACTGCTGCTA 59.100 57.895 0.00 0.00 0.00 3.49
267 268 2.667418 CTGCCCTACACTGCTGCT 59.333 61.111 0.00 0.00 0.00 4.24
268 269 3.130160 GCTGCCCTACACTGCTGC 61.130 66.667 0.00 0.00 43.48 5.25
269 270 2.437359 GGCTGCCCTACACTGCTG 60.437 66.667 7.66 0.00 33.04 4.41
270 271 4.087892 CGGCTGCCCTACACTGCT 62.088 66.667 14.12 0.00 33.04 4.24
271 272 4.082523 TCGGCTGCCCTACACTGC 62.083 66.667 14.12 0.00 0.00 4.40
272 273 2.185350 CTCGGCTGCCCTACACTG 59.815 66.667 14.12 0.00 0.00 3.66
273 274 3.077556 CCTCGGCTGCCCTACACT 61.078 66.667 14.12 0.00 0.00 3.55
274 275 4.162690 CCCTCGGCTGCCCTACAC 62.163 72.222 14.12 0.00 0.00 2.90
285 286 2.202892 GCTAACTTCGGCCCTCGG 60.203 66.667 0.00 0.00 39.77 4.63
286 287 2.202892 GGCTAACTTCGGCCCTCG 60.203 66.667 0.00 0.00 42.30 4.63
290 291 1.674441 GTAATTGGGCTAACTTCGGCC 59.326 52.381 0.00 0.00 46.89 6.13
291 292 2.354821 CAGTAATTGGGCTAACTTCGGC 59.645 50.000 0.00 0.00 0.00 5.54
292 293 2.943033 CCAGTAATTGGGCTAACTTCGG 59.057 50.000 0.00 0.00 43.75 4.30
304 305 1.078708 ACGGCCCGACCAGTAATTG 60.079 57.895 11.71 0.00 39.03 2.32
305 306 1.219935 GACGGCCCGACCAGTAATT 59.780 57.895 11.71 0.00 39.03 1.40
306 307 2.897972 GACGGCCCGACCAGTAAT 59.102 61.111 11.71 0.00 39.03 1.89
307 308 3.751246 CGACGGCCCGACCAGTAA 61.751 66.667 11.71 0.00 39.03 2.24
313 314 4.974989 AAACCACGACGGCCCGAC 62.975 66.667 11.71 1.52 39.03 4.79
314 315 4.973055 CAAACCACGACGGCCCGA 62.973 66.667 11.71 0.00 39.03 5.14
317 318 4.025401 CAGCAAACCACGACGGCC 62.025 66.667 0.00 0.00 39.03 6.13
318 319 1.500512 TTACAGCAAACCACGACGGC 61.501 55.000 0.00 0.00 39.03 5.68
319 320 0.938713 TTTACAGCAAACCACGACGG 59.061 50.000 0.00 0.00 42.50 4.79
320 321 2.741122 TTTTACAGCAAACCACGACG 57.259 45.000 0.00 0.00 0.00 5.12
340 341 1.092348 GGAACTAGCCGCGGATTTTT 58.908 50.000 33.48 19.66 0.00 1.94
341 342 0.746923 GGGAACTAGCCGCGGATTTT 60.747 55.000 33.48 20.08 0.00 1.82
342 343 1.153229 GGGAACTAGCCGCGGATTT 60.153 57.895 33.48 16.16 0.00 2.17
343 344 2.064581 AGGGAACTAGCCGCGGATT 61.065 57.895 33.48 19.08 40.61 3.01
397 406 2.997986 GTTGCGGTTAGAAATTCGGAGA 59.002 45.455 0.00 0.00 0.00 3.71
493 502 4.039092 GCTCTGGAAGGCCTGGCA 62.039 66.667 22.05 0.00 34.17 4.92
494 503 4.811364 GGCTCTGGAAGGCCTGGC 62.811 72.222 5.69 11.05 44.00 4.85
734 744 0.706433 AGGGAACTTGTGGATGGCAT 59.294 50.000 0.00 0.00 37.44 4.40
735 745 2.163454 AGGGAACTTGTGGATGGCA 58.837 52.632 0.00 0.00 37.44 4.92
750 760 5.064452 CGAAGAAGTCATCATTCAAGAAGGG 59.936 44.000 0.00 0.00 0.00 3.95
757 767 3.002791 GGCACGAAGAAGTCATCATTCA 58.997 45.455 0.00 0.00 0.00 2.57
858 879 4.555709 TCAAACCGGGCAGCACGT 62.556 61.111 17.62 0.68 0.00 4.49
941 962 2.719426 GCATGGAAGATGCCAATAGC 57.281 50.000 0.00 0.00 42.16 2.97
988 1009 0.394216 TCAGCCATTGGGATCAACGG 60.394 55.000 4.53 0.00 39.08 4.44
1149 1170 0.609406 TCTCGACAGCCAGCAGTAGT 60.609 55.000 0.00 0.00 0.00 2.73
1263 1284 0.954449 CCTCATCGATGGCATCCAGC 60.954 60.000 24.61 0.00 44.65 4.85
1387 1408 6.017852 CGCCTCCCTTCTTCAATAAGTTTATC 60.018 42.308 0.00 0.00 34.13 1.75
1506 1527 3.614092 GCCCTTCTCAAACAGATCATGA 58.386 45.455 0.00 0.00 0.00 3.07
1563 1584 2.480426 GAAGCGTCGTCTTGCCAACG 62.480 60.000 6.64 0.00 41.39 4.10
1664 2088 1.280133 ACAGCTACACATGTGCTCCAT 59.720 47.619 25.68 8.44 32.78 3.41
1754 2178 2.034999 CACCGGGCTGCCCTTTTA 59.965 61.111 33.39 0.00 42.67 1.52
1784 2208 2.609610 CCTTCCCCGGACCCAAGA 60.610 66.667 0.73 0.00 0.00 3.02
1805 2229 0.600255 CTATAGACCCAAAGCGGCCG 60.600 60.000 24.05 24.05 0.00 6.13
1859 2283 0.669625 CGGGTTCGAGTCCTGGAAAC 60.670 60.000 0.00 0.00 39.00 2.78
1884 2308 1.241165 CTGCTGCCTTGTGAACATGA 58.759 50.000 0.00 0.00 0.00 3.07
1887 2311 0.752743 AAGCTGCTGCCTTGTGAACA 60.753 50.000 12.44 0.00 40.80 3.18
1888 2312 0.386838 AAAGCTGCTGCCTTGTGAAC 59.613 50.000 12.44 0.00 40.80 3.18
1889 2313 1.608590 GTAAAGCTGCTGCCTTGTGAA 59.391 47.619 12.44 0.00 40.80 3.18
1890 2314 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
1891 2315 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
1892 2316 1.237285 CGGTAAAGCTGCTGCCTTGT 61.237 55.000 12.44 0.00 40.80 3.16
1893 2317 1.503542 CGGTAAAGCTGCTGCCTTG 59.496 57.895 12.44 0.00 40.80 3.61
1894 2318 2.335712 GCGGTAAAGCTGCTGCCTT 61.336 57.895 12.44 8.34 45.76 4.35
1895 2319 2.747855 GCGGTAAAGCTGCTGCCT 60.748 61.111 12.44 2.45 45.76 4.75
1903 2327 1.210155 CTTGGCACAGCGGTAAAGC 59.790 57.895 0.00 0.00 42.39 3.51
2068 2493 6.658816 TGCCTGTACAAGAACATCAACATTAT 59.341 34.615 0.00 0.00 0.00 1.28
2156 2588 9.938280 GGTTAATGTGCACCTATAATATCTACA 57.062 33.333 15.69 0.00 0.00 2.74
2157 2589 9.938280 TGGTTAATGTGCACCTATAATATCTAC 57.062 33.333 15.69 1.42 33.76 2.59
2184 2616 4.406326 TGCATTTTTCATGCCCATGTCTAT 59.594 37.500 8.02 0.00 43.94 1.98
2189 2621 3.692101 ACAATGCATTTTTCATGCCCATG 59.308 39.130 9.83 1.86 43.94 3.66
2241 2674 7.510549 CTTCTAAGGATCTTGTGGAAAACAA 57.489 36.000 0.00 0.00 44.97 2.83
2324 2759 8.782144 CACAAAAAGGCAACAATACCAATTTAT 58.218 29.630 0.00 0.00 41.41 1.40
2403 2844 4.923893 TGAAAAGTAGAAACGACGAGACA 58.076 39.130 0.00 0.00 0.00 3.41
2477 2923 5.700373 GGCACAAGCAAATTAAGGAAAATGA 59.300 36.000 0.00 0.00 44.61 2.57
2545 2992 7.347252 AGATAGTCTGTTGTATCTCCACTGTA 58.653 38.462 0.00 0.00 31.54 2.74
2845 3292 1.197264 GTGCTCAGCTTGCTCAAGAAG 59.803 52.381 13.33 7.91 40.79 2.85
3058 3505 2.414029 CCGACCAAACATTTCATCCACG 60.414 50.000 0.00 0.00 0.00 4.94
3082 3529 1.344763 AGCCTGTCGAAGCTGTACTTT 59.655 47.619 5.16 0.00 39.29 2.66
4381 4840 7.064609 GTCAATACGATCAATCTCAACTTTGGA 59.935 37.037 0.00 0.00 0.00 3.53
4639 5098 4.436113 ACAAAAGCCATTGAAATTGGGT 57.564 36.364 6.12 0.00 34.38 4.51
4683 5142 7.768582 TCTTATTTGTGTGAAGACTGAAGACAA 59.231 33.333 0.00 0.00 0.00 3.18
4979 5446 1.179152 TGCTTGATGTTCATGCCAGG 58.821 50.000 11.43 0.00 44.13 4.45
5096 5563 7.951530 AAACTAGAAATGTTGAAGCCATTTG 57.048 32.000 0.00 0.00 41.34 2.32
5122 5589 8.622948 AAAAGAATCTACAAAAGGTACCTCTG 57.377 34.615 16.64 17.63 0.00 3.35
5220 6446 5.278266 CCTTTCAGTTTCGGATGCACTTAAA 60.278 40.000 0.00 0.00 0.00 1.52
5222 6448 3.751175 CCTTTCAGTTTCGGATGCACTTA 59.249 43.478 0.00 0.00 0.00 2.24
5231 6457 1.269723 GCCTTTCCCTTTCAGTTTCGG 59.730 52.381 0.00 0.00 0.00 4.30
5232 6458 1.953686 TGCCTTTCCCTTTCAGTTTCG 59.046 47.619 0.00 0.00 0.00 3.46
5233 6459 4.607293 AATGCCTTTCCCTTTCAGTTTC 57.393 40.909 0.00 0.00 0.00 2.78
5234 6460 4.444733 CCAAATGCCTTTCCCTTTCAGTTT 60.445 41.667 0.00 0.00 0.00 2.66
5235 6461 3.071457 CCAAATGCCTTTCCCTTTCAGTT 59.929 43.478 0.00 0.00 0.00 3.16
5236 6462 2.634453 CCAAATGCCTTTCCCTTTCAGT 59.366 45.455 0.00 0.00 0.00 3.41
5273 6500 0.899720 CTACCCCGCAACTGGAACTA 59.100 55.000 0.00 0.00 0.00 2.24
5286 6513 0.182775 CCCATTGTAGTGCCTACCCC 59.817 60.000 9.12 0.00 36.24 4.95
5292 6520 1.453928 GGAGGCCCATTGTAGTGCC 60.454 63.158 0.00 0.00 44.35 5.01
5293 6521 0.837272 TAGGAGGCCCATTGTAGTGC 59.163 55.000 0.00 0.00 33.88 4.40
5302 6530 4.231890 ACCAAATAAGAAATAGGAGGCCCA 59.768 41.667 0.00 0.00 33.88 5.36
5303 6531 4.804597 ACCAAATAAGAAATAGGAGGCCC 58.195 43.478 0.00 0.00 0.00 5.80
5309 6537 9.868160 AGAATTCCCTACCAAATAAGAAATAGG 57.132 33.333 0.65 0.00 0.00 2.57
5330 6712 3.846588 TCTAACAAGAGGCAGGGAGAATT 59.153 43.478 0.00 0.00 0.00 2.17
5331 6713 3.454858 TCTAACAAGAGGCAGGGAGAAT 58.545 45.455 0.00 0.00 0.00 2.40
5332 6714 2.902608 TCTAACAAGAGGCAGGGAGAA 58.097 47.619 0.00 0.00 0.00 2.87
5376 6782 9.225436 GACATTAAAGAAGAGAAGGAACAGAAT 57.775 33.333 0.00 0.00 0.00 2.40
5399 6805 8.262227 AGGTAAAAATGTATAATCCGTCTGACA 58.738 33.333 8.73 0.00 0.00 3.58
5513 6925 6.479972 ACATATCGATGGAGTTAACCAAGA 57.520 37.500 8.54 0.00 43.47 3.02
5545 6957 7.252612 TGACAATTCCAGTAACAGGAGATAA 57.747 36.000 0.00 0.00 36.33 1.75
5559 6971 4.400251 GCTGATTTCCTGATGACAATTCCA 59.600 41.667 0.00 0.00 0.00 3.53
5560 6972 4.400251 TGCTGATTTCCTGATGACAATTCC 59.600 41.667 0.00 0.00 0.00 3.01
5566 6978 4.197750 ACAGATGCTGATTTCCTGATGAC 58.802 43.478 0.82 0.00 35.18 3.06
5598 7012 6.583806 GCAAAGTATGACCAACAATGAGAAAG 59.416 38.462 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.