Multiple sequence alignment - TraesCS2B01G400100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G400100 chr2B 100.000 3551 0 0 1 3551 568574500 568578050 0.000000e+00 6558.0
1 TraesCS2B01G400100 chr2B 99.083 327 3 0 1 327 568564477 568564803 3.950000e-164 588.0
2 TraesCS2B01G400100 chr2B 97.859 327 7 0 1 327 320293529 320293203 1.850000e-157 566.0
3 TraesCS2B01G400100 chr2B 97.853 326 7 0 1 326 567260484 567260159 6.650000e-157 564.0
4 TraesCS2B01G400100 chr2B 97.554 327 8 0 1 327 148977674 148978000 8.610000e-156 560.0
5 TraesCS2B01G400100 chr2A 91.437 2324 112 29 451 2715 627586950 627589245 0.000000e+00 3109.0
6 TraesCS2B01G400100 chr2D 92.931 2136 93 12 723 2836 483761550 483763649 0.000000e+00 3055.0
7 TraesCS2B01G400100 chr7B 88.950 543 38 8 3025 3551 150585188 150585724 0.000000e+00 651.0
8 TraesCS2B01G400100 chr7B 96.988 332 10 0 1 332 401015143 401014812 3.100000e-155 558.0
9 TraesCS2B01G400100 chr7B 87.736 212 15 4 2824 3025 150584899 150585109 1.650000e-58 237.0
10 TraesCS2B01G400100 chr4A 88.745 542 41 7 3025 3551 709790146 709790682 0.000000e+00 645.0
11 TraesCS2B01G400100 chr4A 87.736 212 17 4 2823 3025 709789857 709790068 4.580000e-59 239.0
12 TraesCS2B01G400100 chr6B 97.554 327 8 0 1 327 428778497 428778823 8.610000e-156 560.0
13 TraesCS2B01G400100 chr5B 97.554 327 8 0 1 327 543361647 543361321 8.610000e-156 560.0
14 TraesCS2B01G400100 chr5B 97.546 326 8 0 1 326 692331928 692331603 3.100000e-155 558.0
15 TraesCS2B01G400100 chrUn 97.554 327 7 1 1 327 343782480 343782805 3.100000e-155 558.0
16 TraesCS2B01G400100 chrUn 88.889 54 6 0 2827 2880 90701799 90701746 2.290000e-07 67.6
17 TraesCS2B01G400100 chr4B 81.004 558 71 17 3028 3551 138626774 138626218 9.170000e-111 411.0
18 TraesCS2B01G400100 chr3A 80.901 555 62 20 3025 3551 739541626 739541088 7.140000e-107 398.0
19 TraesCS2B01G400100 chr3A 81.308 214 24 10 2827 3025 739541904 739541692 3.670000e-35 159.0
20 TraesCS2B01G400100 chr5A 89.286 56 5 1 2824 2878 37068882 37068937 6.360000e-08 69.4
21 TraesCS2B01G400100 chr5A 88.235 51 6 0 2827 2877 423058285 423058335 1.060000e-05 62.1
22 TraesCS2B01G400100 chr6D 90.196 51 5 0 2827 2877 60559855 60559905 2.290000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G400100 chr2B 568574500 568578050 3550 False 6558.0 6558 100.0000 1 3551 1 chr2B.!!$F3 3550
1 TraesCS2B01G400100 chr2A 627586950 627589245 2295 False 3109.0 3109 91.4370 451 2715 1 chr2A.!!$F1 2264
2 TraesCS2B01G400100 chr2D 483761550 483763649 2099 False 3055.0 3055 92.9310 723 2836 1 chr2D.!!$F1 2113
3 TraesCS2B01G400100 chr7B 150584899 150585724 825 False 444.0 651 88.3430 2824 3551 2 chr7B.!!$F1 727
4 TraesCS2B01G400100 chr4A 709789857 709790682 825 False 442.0 645 88.2405 2823 3551 2 chr4A.!!$F1 728
5 TraesCS2B01G400100 chr4B 138626218 138626774 556 True 411.0 411 81.0040 3028 3551 1 chr4B.!!$R1 523
6 TraesCS2B01G400100 chr3A 739541088 739541904 816 True 278.5 398 81.1045 2827 3551 2 chr3A.!!$R1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 321 0.037326 ATATAGCCGCATCGTGGGTG 60.037 55.0 8.47 0.0 44.01 4.61 F
555 556 0.101219 GGATGAAGCGAATTGTGCCC 59.899 55.0 0.00 0.0 0.00 5.36 F
2165 2201 0.107848 AGGGCGATTTACTTGTCGGG 60.108 55.0 0.00 0.0 38.24 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2183 2219 0.109086 CTGATTGCTGTCGTCGTCCT 60.109 55.0 0.0 0.0 0.0 3.85 R
2185 2221 0.109272 TCCTGATTGCTGTCGTCGTC 60.109 55.0 0.0 0.0 0.0 4.20 R
2968 3042 0.176680 GAGCAGAGGAAATGAGGCGA 59.823 55.0 0.0 0.0 0.0 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.495729 ATGAGGCCCTTGGTCGTT 58.504 55.556 0.00 0.00 29.39 3.85
18 19 2.691663 ATGAGGCCCTTGGTCGTTA 58.308 52.632 0.00 0.00 29.39 3.18
19 20 1.213296 ATGAGGCCCTTGGTCGTTAT 58.787 50.000 0.00 0.00 29.39 1.89
20 21 0.988832 TGAGGCCCTTGGTCGTTATT 59.011 50.000 0.00 0.00 29.39 1.40
21 22 2.189676 TGAGGCCCTTGGTCGTTATTA 58.810 47.619 0.00 0.00 29.39 0.98
22 23 2.775384 TGAGGCCCTTGGTCGTTATTAT 59.225 45.455 0.00 0.00 29.39 1.28
23 24 3.139077 GAGGCCCTTGGTCGTTATTATG 58.861 50.000 0.00 0.00 29.39 1.90
24 25 2.508300 AGGCCCTTGGTCGTTATTATGT 59.492 45.455 0.00 0.00 29.39 2.29
25 26 3.712733 AGGCCCTTGGTCGTTATTATGTA 59.287 43.478 0.00 0.00 29.39 2.29
26 27 4.349930 AGGCCCTTGGTCGTTATTATGTAT 59.650 41.667 0.00 0.00 29.39 2.29
27 28 5.067954 GGCCCTTGGTCGTTATTATGTATT 58.932 41.667 0.00 0.00 0.00 1.89
28 29 5.048991 GGCCCTTGGTCGTTATTATGTATTG 60.049 44.000 0.00 0.00 0.00 1.90
29 30 5.529800 GCCCTTGGTCGTTATTATGTATTGT 59.470 40.000 0.00 0.00 0.00 2.71
30 31 6.038936 GCCCTTGGTCGTTATTATGTATTGTT 59.961 38.462 0.00 0.00 0.00 2.83
31 32 7.415877 GCCCTTGGTCGTTATTATGTATTGTTT 60.416 37.037 0.00 0.00 0.00 2.83
32 33 8.126700 CCCTTGGTCGTTATTATGTATTGTTTC 58.873 37.037 0.00 0.00 0.00 2.78
33 34 8.889717 CCTTGGTCGTTATTATGTATTGTTTCT 58.110 33.333 0.00 0.00 0.00 2.52
36 37 9.537192 TGGTCGTTATTATGTATTGTTTCTAGG 57.463 33.333 0.00 0.00 0.00 3.02
37 38 9.538508 GGTCGTTATTATGTATTGTTTCTAGGT 57.461 33.333 0.00 0.00 0.00 3.08
47 48 8.589701 TGTATTGTTTCTAGGTGATCAGTAGA 57.410 34.615 9.71 9.71 0.00 2.59
48 49 8.687242 TGTATTGTTTCTAGGTGATCAGTAGAG 58.313 37.037 12.42 2.34 0.00 2.43
49 50 6.531503 TTGTTTCTAGGTGATCAGTAGAGG 57.468 41.667 12.42 0.00 0.00 3.69
50 51 5.580998 TGTTTCTAGGTGATCAGTAGAGGT 58.419 41.667 12.42 0.00 0.00 3.85
51 52 5.419155 TGTTTCTAGGTGATCAGTAGAGGTG 59.581 44.000 12.42 0.00 0.00 4.00
52 53 3.556999 TCTAGGTGATCAGTAGAGGTGC 58.443 50.000 9.71 0.00 0.00 5.01
53 54 1.490574 AGGTGATCAGTAGAGGTGCC 58.509 55.000 0.00 0.00 0.00 5.01
54 55 0.466124 GGTGATCAGTAGAGGTGCCC 59.534 60.000 0.00 0.00 0.00 5.36
55 56 1.195115 GTGATCAGTAGAGGTGCCCA 58.805 55.000 0.00 0.00 0.00 5.36
56 57 1.137872 GTGATCAGTAGAGGTGCCCAG 59.862 57.143 0.00 0.00 0.00 4.45
57 58 1.273267 TGATCAGTAGAGGTGCCCAGT 60.273 52.381 0.00 0.00 0.00 4.00
58 59 1.410882 GATCAGTAGAGGTGCCCAGTC 59.589 57.143 0.00 0.00 0.00 3.51
59 60 0.965866 TCAGTAGAGGTGCCCAGTCG 60.966 60.000 0.00 0.00 0.00 4.18
60 61 1.682684 AGTAGAGGTGCCCAGTCGG 60.683 63.158 0.00 0.00 0.00 4.79
76 77 4.837085 GGGACGATCGGGGATCTA 57.163 61.111 20.98 0.00 36.96 1.98
77 78 2.569183 GGGACGATCGGGGATCTAG 58.431 63.158 20.98 0.00 36.96 2.43
78 79 1.596895 GGGACGATCGGGGATCTAGC 61.597 65.000 20.98 0.00 36.96 3.42
79 80 0.894184 GGACGATCGGGGATCTAGCA 60.894 60.000 20.98 0.00 36.96 3.49
80 81 1.178276 GACGATCGGGGATCTAGCAT 58.822 55.000 20.98 0.00 36.96 3.79
81 82 1.546476 GACGATCGGGGATCTAGCATT 59.454 52.381 20.98 0.00 36.96 3.56
82 83 1.971357 ACGATCGGGGATCTAGCATTT 59.029 47.619 20.98 0.00 36.96 2.32
83 84 2.289072 ACGATCGGGGATCTAGCATTTG 60.289 50.000 20.98 0.00 36.96 2.32
84 85 2.704572 GATCGGGGATCTAGCATTTGG 58.295 52.381 0.00 0.00 36.27 3.28
85 86 0.764890 TCGGGGATCTAGCATTTGGG 59.235 55.000 0.00 0.00 0.00 4.12
86 87 0.250901 CGGGGATCTAGCATTTGGGG 60.251 60.000 0.00 0.00 0.00 4.96
87 88 0.853530 GGGGATCTAGCATTTGGGGT 59.146 55.000 0.00 0.00 0.00 4.95
88 89 1.217942 GGGGATCTAGCATTTGGGGTT 59.782 52.381 0.00 0.00 0.00 4.11
89 90 2.310538 GGGATCTAGCATTTGGGGTTG 58.689 52.381 0.00 0.00 0.00 3.77
90 91 2.358195 GGGATCTAGCATTTGGGGTTGT 60.358 50.000 0.00 0.00 0.00 3.32
91 92 2.952310 GGATCTAGCATTTGGGGTTGTC 59.048 50.000 0.00 0.00 0.00 3.18
92 93 3.372025 GGATCTAGCATTTGGGGTTGTCT 60.372 47.826 0.00 0.00 0.00 3.41
93 94 3.806949 TCTAGCATTTGGGGTTGTCTT 57.193 42.857 0.00 0.00 0.00 3.01
94 95 3.686016 TCTAGCATTTGGGGTTGTCTTC 58.314 45.455 0.00 0.00 0.00 2.87
95 96 2.683211 AGCATTTGGGGTTGTCTTCT 57.317 45.000 0.00 0.00 0.00 2.85
96 97 2.962859 AGCATTTGGGGTTGTCTTCTT 58.037 42.857 0.00 0.00 0.00 2.52
97 98 3.308401 AGCATTTGGGGTTGTCTTCTTT 58.692 40.909 0.00 0.00 0.00 2.52
98 99 3.711190 AGCATTTGGGGTTGTCTTCTTTT 59.289 39.130 0.00 0.00 0.00 2.27
99 100 4.058124 GCATTTGGGGTTGTCTTCTTTTC 58.942 43.478 0.00 0.00 0.00 2.29
100 101 4.442753 GCATTTGGGGTTGTCTTCTTTTCA 60.443 41.667 0.00 0.00 0.00 2.69
101 102 5.742838 GCATTTGGGGTTGTCTTCTTTTCAT 60.743 40.000 0.00 0.00 0.00 2.57
102 103 5.948742 TTTGGGGTTGTCTTCTTTTCATT 57.051 34.783 0.00 0.00 0.00 2.57
103 104 5.948742 TTGGGGTTGTCTTCTTTTCATTT 57.051 34.783 0.00 0.00 0.00 2.32
104 105 5.275067 TGGGGTTGTCTTCTTTTCATTTG 57.725 39.130 0.00 0.00 0.00 2.32
105 106 4.959210 TGGGGTTGTCTTCTTTTCATTTGA 59.041 37.500 0.00 0.00 0.00 2.69
106 107 5.423610 TGGGGTTGTCTTCTTTTCATTTGAA 59.576 36.000 0.00 0.00 0.00 2.69
107 108 5.753438 GGGGTTGTCTTCTTTTCATTTGAAC 59.247 40.000 0.00 0.00 33.13 3.18
108 109 6.406961 GGGGTTGTCTTCTTTTCATTTGAACT 60.407 38.462 0.00 0.00 33.13 3.01
109 110 7.041721 GGGTTGTCTTCTTTTCATTTGAACTT 58.958 34.615 0.00 0.00 33.13 2.66
110 111 7.010460 GGGTTGTCTTCTTTTCATTTGAACTTG 59.990 37.037 0.00 0.00 33.13 3.16
111 112 7.759433 GGTTGTCTTCTTTTCATTTGAACTTGA 59.241 33.333 0.00 0.00 33.13 3.02
112 113 8.587111 GTTGTCTTCTTTTCATTTGAACTTGAC 58.413 33.333 0.00 0.00 33.13 3.18
113 114 7.257722 TGTCTTCTTTTCATTTGAACTTGACC 58.742 34.615 0.00 0.00 33.13 4.02
114 115 6.414987 GTCTTCTTTTCATTTGAACTTGACCG 59.585 38.462 0.00 0.00 33.13 4.79
115 116 5.828299 TCTTTTCATTTGAACTTGACCGT 57.172 34.783 0.00 0.00 33.13 4.83
116 117 6.928979 TCTTTTCATTTGAACTTGACCGTA 57.071 33.333 0.00 0.00 33.13 4.02
117 118 6.954944 TCTTTTCATTTGAACTTGACCGTAG 58.045 36.000 0.00 0.00 33.13 3.51
118 119 6.540914 TCTTTTCATTTGAACTTGACCGTAGT 59.459 34.615 0.00 0.00 33.13 2.73
119 120 5.917541 TTCATTTGAACTTGACCGTAGTC 57.082 39.130 0.00 0.00 43.83 2.59
120 121 3.985279 TCATTTGAACTTGACCGTAGTCG 59.015 43.478 0.00 0.00 46.74 4.18
121 122 7.934578 TTTCATTTGAACTTGACCGTAGTCGG 61.935 42.308 5.08 5.08 46.88 4.79
131 132 3.144300 CGTAGTCGGTCTATGCGTG 57.856 57.895 0.00 0.00 0.00 5.34
132 133 0.376152 CGTAGTCGGTCTATGCGTGT 59.624 55.000 0.00 0.00 0.00 4.49
133 134 1.594397 CGTAGTCGGTCTATGCGTGTA 59.406 52.381 0.00 0.00 0.00 2.90
134 135 2.222678 CGTAGTCGGTCTATGCGTGTAT 59.777 50.000 0.00 0.00 0.00 2.29
135 136 3.303593 CGTAGTCGGTCTATGCGTGTATT 60.304 47.826 0.00 0.00 0.00 1.89
136 137 3.795623 AGTCGGTCTATGCGTGTATTT 57.204 42.857 0.00 0.00 0.00 1.40
137 138 3.444916 AGTCGGTCTATGCGTGTATTTG 58.555 45.455 0.00 0.00 0.00 2.32
138 139 3.129813 AGTCGGTCTATGCGTGTATTTGA 59.870 43.478 0.00 0.00 0.00 2.69
139 140 3.861113 GTCGGTCTATGCGTGTATTTGAA 59.139 43.478 0.00 0.00 0.00 2.69
140 141 4.506654 GTCGGTCTATGCGTGTATTTGAAT 59.493 41.667 0.00 0.00 0.00 2.57
141 142 4.506288 TCGGTCTATGCGTGTATTTGAATG 59.494 41.667 0.00 0.00 0.00 2.67
142 143 4.506288 CGGTCTATGCGTGTATTTGAATGA 59.494 41.667 0.00 0.00 0.00 2.57
143 144 5.177511 CGGTCTATGCGTGTATTTGAATGAT 59.822 40.000 0.00 0.00 0.00 2.45
144 145 6.365839 GGTCTATGCGTGTATTTGAATGATG 58.634 40.000 0.00 0.00 0.00 3.07
145 146 6.017934 GGTCTATGCGTGTATTTGAATGATGT 60.018 38.462 0.00 0.00 0.00 3.06
146 147 7.170828 GGTCTATGCGTGTATTTGAATGATGTA 59.829 37.037 0.00 0.00 0.00 2.29
147 148 8.712363 GTCTATGCGTGTATTTGAATGATGTAT 58.288 33.333 0.00 0.00 0.00 2.29
148 149 8.711457 TCTATGCGTGTATTTGAATGATGTATG 58.289 33.333 0.00 0.00 0.00 2.39
149 150 6.917217 TGCGTGTATTTGAATGATGTATGA 57.083 33.333 0.00 0.00 0.00 2.15
150 151 7.495135 TGCGTGTATTTGAATGATGTATGAT 57.505 32.000 0.00 0.00 0.00 2.45
151 152 7.575365 TGCGTGTATTTGAATGATGTATGATC 58.425 34.615 0.00 0.00 0.00 2.92
152 153 7.442062 TGCGTGTATTTGAATGATGTATGATCT 59.558 33.333 0.00 0.00 0.00 2.75
153 154 8.285394 GCGTGTATTTGAATGATGTATGATCTT 58.715 33.333 0.00 0.00 0.00 2.40
177 178 9.289303 CTTAATTTATGTATTGTGTGAAGTGGC 57.711 33.333 0.00 0.00 0.00 5.01
178 179 4.937696 TTATGTATTGTGTGAAGTGGCG 57.062 40.909 0.00 0.00 0.00 5.69
179 180 2.535012 TGTATTGTGTGAAGTGGCGA 57.465 45.000 0.00 0.00 0.00 5.54
180 181 3.052455 TGTATTGTGTGAAGTGGCGAT 57.948 42.857 0.00 0.00 0.00 4.58
181 182 3.407698 TGTATTGTGTGAAGTGGCGATT 58.592 40.909 0.00 0.00 0.00 3.34
182 183 2.995466 ATTGTGTGAAGTGGCGATTG 57.005 45.000 0.00 0.00 0.00 2.67
183 184 1.674359 TTGTGTGAAGTGGCGATTGT 58.326 45.000 0.00 0.00 0.00 2.71
184 185 2.535012 TGTGTGAAGTGGCGATTGTA 57.465 45.000 0.00 0.00 0.00 2.41
185 186 2.839975 TGTGTGAAGTGGCGATTGTAA 58.160 42.857 0.00 0.00 0.00 2.41
186 187 2.805671 TGTGTGAAGTGGCGATTGTAAG 59.194 45.455 0.00 0.00 0.00 2.34
187 188 1.804151 TGTGAAGTGGCGATTGTAAGC 59.196 47.619 0.00 0.00 0.00 3.09
196 197 2.622436 GCGATTGTAAGCCAACTCTCT 58.378 47.619 0.00 0.00 35.44 3.10
197 198 3.003480 GCGATTGTAAGCCAACTCTCTT 58.997 45.455 0.00 0.00 35.44 2.85
198 199 3.437049 GCGATTGTAAGCCAACTCTCTTT 59.563 43.478 0.00 0.00 35.44 2.52
199 200 4.630069 GCGATTGTAAGCCAACTCTCTTTA 59.370 41.667 0.00 0.00 35.44 1.85
200 201 5.294552 GCGATTGTAAGCCAACTCTCTTTAT 59.705 40.000 0.00 0.00 35.44 1.40
201 202 6.510317 GCGATTGTAAGCCAACTCTCTTTATC 60.510 42.308 0.00 0.00 35.44 1.75
202 203 6.018669 CGATTGTAAGCCAACTCTCTTTATCC 60.019 42.308 0.00 0.00 35.44 2.59
203 204 5.099042 TGTAAGCCAACTCTCTTTATCCC 57.901 43.478 0.00 0.00 0.00 3.85
204 205 4.534500 TGTAAGCCAACTCTCTTTATCCCA 59.466 41.667 0.00 0.00 0.00 4.37
205 206 4.870021 AAGCCAACTCTCTTTATCCCAT 57.130 40.909 0.00 0.00 0.00 4.00
206 207 4.870021 AGCCAACTCTCTTTATCCCATT 57.130 40.909 0.00 0.00 0.00 3.16
207 208 4.786425 AGCCAACTCTCTTTATCCCATTC 58.214 43.478 0.00 0.00 0.00 2.67
208 209 4.476479 AGCCAACTCTCTTTATCCCATTCT 59.524 41.667 0.00 0.00 0.00 2.40
209 210 5.044550 AGCCAACTCTCTTTATCCCATTCTT 60.045 40.000 0.00 0.00 0.00 2.52
210 211 5.067023 GCCAACTCTCTTTATCCCATTCTTG 59.933 44.000 0.00 0.00 0.00 3.02
211 212 6.183347 CCAACTCTCTTTATCCCATTCTTGT 58.817 40.000 0.00 0.00 0.00 3.16
212 213 6.660949 CCAACTCTCTTTATCCCATTCTTGTT 59.339 38.462 0.00 0.00 0.00 2.83
213 214 7.148171 CCAACTCTCTTTATCCCATTCTTGTTC 60.148 40.741 0.00 0.00 0.00 3.18
214 215 7.020827 ACTCTCTTTATCCCATTCTTGTTCA 57.979 36.000 0.00 0.00 0.00 3.18
215 216 7.637511 ACTCTCTTTATCCCATTCTTGTTCAT 58.362 34.615 0.00 0.00 0.00 2.57
216 217 8.112183 ACTCTCTTTATCCCATTCTTGTTCATT 58.888 33.333 0.00 0.00 0.00 2.57
217 218 9.618890 CTCTCTTTATCCCATTCTTGTTCATTA 57.381 33.333 0.00 0.00 0.00 1.90
218 219 9.396022 TCTCTTTATCCCATTCTTGTTCATTAC 57.604 33.333 0.00 0.00 0.00 1.89
219 220 9.177608 CTCTTTATCCCATTCTTGTTCATTACA 57.822 33.333 0.00 0.00 34.12 2.41
220 221 9.699410 TCTTTATCCCATTCTTGTTCATTACAT 57.301 29.630 0.00 0.00 36.44 2.29
221 222 9.740239 CTTTATCCCATTCTTGTTCATTACATG 57.260 33.333 0.00 0.00 36.44 3.21
222 223 6.720112 ATCCCATTCTTGTTCATTACATGG 57.280 37.500 0.00 0.00 36.44 3.66
223 224 5.266733 CCCATTCTTGTTCATTACATGGG 57.733 43.478 0.00 0.00 43.44 4.00
225 226 6.720112 CCATTCTTGTTCATTACATGGGAT 57.280 37.500 0.00 0.00 36.44 3.85
226 227 7.116075 CCATTCTTGTTCATTACATGGGATT 57.884 36.000 0.00 0.00 36.44 3.01
227 228 6.982141 CCATTCTTGTTCATTACATGGGATTG 59.018 38.462 0.00 0.00 36.44 2.67
228 229 7.364056 CCATTCTTGTTCATTACATGGGATTGT 60.364 37.037 0.00 0.00 36.44 2.71
229 230 6.513806 TCTTGTTCATTACATGGGATTGTG 57.486 37.500 0.00 0.00 36.44 3.33
230 231 6.009589 TCTTGTTCATTACATGGGATTGTGT 58.990 36.000 0.00 0.00 36.44 3.72
231 232 5.641783 TGTTCATTACATGGGATTGTGTG 57.358 39.130 0.00 0.00 0.00 3.82
232 233 5.320277 TGTTCATTACATGGGATTGTGTGA 58.680 37.500 0.00 0.00 0.00 3.58
233 234 5.772169 TGTTCATTACATGGGATTGTGTGAA 59.228 36.000 0.00 0.00 35.28 3.18
234 235 6.072008 TGTTCATTACATGGGATTGTGTGAAG 60.072 38.462 0.00 0.00 36.80 3.02
235 236 5.814481 TCATTACATGGGATTGTGTGAAGA 58.186 37.500 0.00 0.00 0.00 2.87
236 237 6.425735 TCATTACATGGGATTGTGTGAAGAT 58.574 36.000 0.00 0.00 0.00 2.40
237 238 6.319405 TCATTACATGGGATTGTGTGAAGATG 59.681 38.462 0.00 0.00 0.00 2.90
238 239 4.305539 ACATGGGATTGTGTGAAGATGA 57.694 40.909 0.00 0.00 0.00 2.92
239 240 4.012374 ACATGGGATTGTGTGAAGATGAC 58.988 43.478 0.00 0.00 0.00 3.06
240 241 3.071874 TGGGATTGTGTGAAGATGACC 57.928 47.619 0.00 0.00 0.00 4.02
241 242 2.290896 TGGGATTGTGTGAAGATGACCC 60.291 50.000 0.00 0.00 35.82 4.46
242 243 2.025887 GGGATTGTGTGAAGATGACCCT 60.026 50.000 0.00 0.00 32.93 4.34
243 244 3.562176 GGGATTGTGTGAAGATGACCCTT 60.562 47.826 0.00 0.00 32.93 3.95
244 245 3.691609 GGATTGTGTGAAGATGACCCTTC 59.308 47.826 0.00 0.00 42.09 3.46
245 246 4.566488 GGATTGTGTGAAGATGACCCTTCT 60.566 45.833 0.00 0.00 42.20 2.85
246 247 4.437682 TTGTGTGAAGATGACCCTTCTT 57.562 40.909 0.00 0.00 42.20 2.52
247 248 3.743521 TGTGTGAAGATGACCCTTCTTG 58.256 45.455 0.00 0.00 42.20 3.02
248 249 2.485814 GTGTGAAGATGACCCTTCTTGC 59.514 50.000 0.00 0.00 42.20 4.01
249 250 1.734465 GTGAAGATGACCCTTCTTGCG 59.266 52.381 0.00 0.00 42.20 4.85
250 251 1.623311 TGAAGATGACCCTTCTTGCGA 59.377 47.619 0.00 0.00 42.20 5.10
251 252 2.003301 GAAGATGACCCTTCTTGCGAC 58.997 52.381 0.00 0.00 39.44 5.19
252 253 0.976641 AGATGACCCTTCTTGCGACA 59.023 50.000 0.00 0.00 0.00 4.35
253 254 1.347707 AGATGACCCTTCTTGCGACAA 59.652 47.619 0.00 0.00 0.00 3.18
254 255 2.151202 GATGACCCTTCTTGCGACAAA 58.849 47.619 0.00 0.00 0.00 2.83
255 256 2.045561 TGACCCTTCTTGCGACAAAA 57.954 45.000 0.00 0.00 0.00 2.44
256 257 1.673920 TGACCCTTCTTGCGACAAAAC 59.326 47.619 0.00 0.00 0.00 2.43
257 258 1.947456 GACCCTTCTTGCGACAAAACT 59.053 47.619 0.00 0.00 0.00 2.66
258 259 3.135994 GACCCTTCTTGCGACAAAACTA 58.864 45.455 0.00 0.00 0.00 2.24
259 260 2.876550 ACCCTTCTTGCGACAAAACTAC 59.123 45.455 0.00 0.00 0.00 2.73
260 261 3.139077 CCCTTCTTGCGACAAAACTACT 58.861 45.455 0.00 0.00 0.00 2.57
261 262 4.202284 ACCCTTCTTGCGACAAAACTACTA 60.202 41.667 0.00 0.00 0.00 1.82
262 263 4.935808 CCCTTCTTGCGACAAAACTACTAT 59.064 41.667 0.00 0.00 0.00 2.12
263 264 5.163854 CCCTTCTTGCGACAAAACTACTATG 60.164 44.000 0.00 0.00 0.00 2.23
264 265 4.921470 TCTTGCGACAAAACTACTATGC 57.079 40.909 0.00 0.00 0.00 3.14
265 266 3.366724 TCTTGCGACAAAACTACTATGCG 59.633 43.478 0.00 0.00 0.00 4.73
266 267 1.996898 TGCGACAAAACTACTATGCGG 59.003 47.619 0.00 0.00 0.00 5.69
267 268 1.997606 GCGACAAAACTACTATGCGGT 59.002 47.619 0.00 0.00 0.00 5.68
268 269 2.414138 GCGACAAAACTACTATGCGGTT 59.586 45.455 0.00 0.00 0.00 4.44
269 270 3.613737 GCGACAAAACTACTATGCGGTTA 59.386 43.478 0.00 0.00 0.00 2.85
270 271 4.269363 GCGACAAAACTACTATGCGGTTAT 59.731 41.667 0.00 0.00 0.00 1.89
271 272 5.724239 CGACAAAACTACTATGCGGTTATG 58.276 41.667 0.00 0.00 0.00 1.90
272 273 5.479716 ACAAAACTACTATGCGGTTATGC 57.520 39.130 0.00 0.00 0.00 3.14
273 274 4.334481 ACAAAACTACTATGCGGTTATGCC 59.666 41.667 0.00 0.00 0.00 4.40
274 275 4.417426 AAACTACTATGCGGTTATGCCT 57.583 40.909 0.00 0.00 34.25 4.75
275 276 3.662247 ACTACTATGCGGTTATGCCTC 57.338 47.619 0.00 0.00 34.25 4.70
276 277 3.231818 ACTACTATGCGGTTATGCCTCT 58.768 45.455 0.00 0.00 34.25 3.69
277 278 4.404640 ACTACTATGCGGTTATGCCTCTA 58.595 43.478 0.00 0.00 34.25 2.43
278 279 4.831155 ACTACTATGCGGTTATGCCTCTAA 59.169 41.667 0.00 0.00 34.25 2.10
279 280 4.258702 ACTATGCGGTTATGCCTCTAAG 57.741 45.455 0.00 0.00 34.25 2.18
280 281 3.641906 ACTATGCGGTTATGCCTCTAAGT 59.358 43.478 0.00 0.00 34.25 2.24
281 282 2.596904 TGCGGTTATGCCTCTAAGTC 57.403 50.000 0.00 0.00 34.25 3.01
282 283 1.202371 TGCGGTTATGCCTCTAAGTCG 60.202 52.381 0.00 0.00 34.25 4.18
283 284 1.202382 GCGGTTATGCCTCTAAGTCGT 60.202 52.381 0.00 0.00 34.25 4.34
284 285 2.460918 CGGTTATGCCTCTAAGTCGTG 58.539 52.381 0.00 0.00 34.25 4.35
285 286 2.202566 GGTTATGCCTCTAAGTCGTGC 58.797 52.381 0.00 0.00 0.00 5.34
286 287 2.159085 GGTTATGCCTCTAAGTCGTGCT 60.159 50.000 0.00 0.00 0.00 4.40
287 288 3.522553 GTTATGCCTCTAAGTCGTGCTT 58.477 45.455 0.00 1.30 41.05 3.91
288 289 2.301577 ATGCCTCTAAGTCGTGCTTC 57.698 50.000 0.00 0.00 38.57 3.86
289 290 0.109272 TGCCTCTAAGTCGTGCTTCG 60.109 55.000 0.00 0.00 38.57 3.79
290 291 0.170561 GCCTCTAAGTCGTGCTTCGA 59.829 55.000 0.92 0.92 46.83 3.71
299 300 2.028484 GTGCTTCGACACGTGGGA 59.972 61.111 21.57 13.88 0.00 4.37
300 301 2.022129 GTGCTTCGACACGTGGGAG 61.022 63.158 21.57 8.15 0.00 4.30
301 302 2.197605 TGCTTCGACACGTGGGAGA 61.198 57.895 21.57 12.82 0.00 3.71
302 303 1.215647 GCTTCGACACGTGGGAGAT 59.784 57.895 21.57 0.00 0.00 2.75
303 304 0.454600 GCTTCGACACGTGGGAGATA 59.545 55.000 21.57 1.34 0.00 1.98
304 305 1.067212 GCTTCGACACGTGGGAGATAT 59.933 52.381 21.57 0.00 0.00 1.63
305 306 2.292569 GCTTCGACACGTGGGAGATATA 59.707 50.000 21.57 0.63 0.00 0.86
306 307 3.609644 GCTTCGACACGTGGGAGATATAG 60.610 52.174 21.57 11.01 0.00 1.31
307 308 1.878088 TCGACACGTGGGAGATATAGC 59.122 52.381 21.57 0.00 0.00 2.97
308 309 1.068472 CGACACGTGGGAGATATAGCC 60.068 57.143 21.57 0.00 0.00 3.93
309 310 0.959553 ACACGTGGGAGATATAGCCG 59.040 55.000 21.57 0.00 0.00 5.52
310 311 0.388649 CACGTGGGAGATATAGCCGC 60.389 60.000 7.95 0.00 0.00 6.53
311 312 0.826256 ACGTGGGAGATATAGCCGCA 60.826 55.000 0.00 0.00 0.00 5.69
312 313 0.532573 CGTGGGAGATATAGCCGCAT 59.467 55.000 0.00 0.00 0.00 4.73
313 314 1.469940 CGTGGGAGATATAGCCGCATC 60.470 57.143 0.00 0.00 0.00 3.91
314 315 0.817654 TGGGAGATATAGCCGCATCG 59.182 55.000 0.00 0.00 0.00 3.84
315 316 0.818296 GGGAGATATAGCCGCATCGT 59.182 55.000 0.00 0.00 0.00 3.73
316 317 1.469940 GGGAGATATAGCCGCATCGTG 60.470 57.143 0.00 0.00 0.00 4.35
317 318 1.469940 GGAGATATAGCCGCATCGTGG 60.470 57.143 0.00 0.00 36.10 4.94
318 319 0.532573 AGATATAGCCGCATCGTGGG 59.467 55.000 0.00 0.00 33.18 4.61
319 320 0.246635 GATATAGCCGCATCGTGGGT 59.753 55.000 3.52 3.52 46.10 4.51
320 321 0.037326 ATATAGCCGCATCGTGGGTG 60.037 55.000 8.47 0.00 44.01 4.61
321 322 1.396607 TATAGCCGCATCGTGGGTGT 61.397 55.000 8.47 4.53 44.01 4.16
322 323 2.252072 ATAGCCGCATCGTGGGTGTT 62.252 55.000 8.47 0.00 44.01 3.32
323 324 1.605971 TAGCCGCATCGTGGGTGTTA 61.606 55.000 8.47 0.00 44.01 2.41
324 325 2.746803 GCCGCATCGTGGGTGTTAC 61.747 63.158 0.00 0.00 33.18 2.50
325 326 1.374885 CCGCATCGTGGGTGTTACA 60.375 57.895 0.00 0.00 0.00 2.41
326 327 0.951525 CCGCATCGTGGGTGTTACAA 60.952 55.000 0.00 0.00 0.00 2.41
327 328 1.083489 CGCATCGTGGGTGTTACAAT 58.917 50.000 0.00 0.00 0.00 2.71
328 329 1.202020 CGCATCGTGGGTGTTACAATG 60.202 52.381 0.00 0.00 0.00 2.82
329 330 1.810151 GCATCGTGGGTGTTACAATGT 59.190 47.619 0.00 0.00 0.00 2.71
330 331 2.159572 GCATCGTGGGTGTTACAATGTC 60.160 50.000 0.00 0.00 0.00 3.06
331 332 2.172851 TCGTGGGTGTTACAATGTCC 57.827 50.000 0.00 0.00 0.00 4.02
332 333 1.416772 TCGTGGGTGTTACAATGTCCA 59.583 47.619 0.00 0.00 0.00 4.02
333 334 2.039216 TCGTGGGTGTTACAATGTCCAT 59.961 45.455 0.00 0.00 0.00 3.41
334 335 2.161410 CGTGGGTGTTACAATGTCCATG 59.839 50.000 0.00 0.00 0.00 3.66
335 336 3.417101 GTGGGTGTTACAATGTCCATGA 58.583 45.455 0.00 0.00 0.00 3.07
336 337 3.823873 GTGGGTGTTACAATGTCCATGAA 59.176 43.478 0.00 0.00 0.00 2.57
337 338 4.462483 GTGGGTGTTACAATGTCCATGAAT 59.538 41.667 0.00 0.00 0.00 2.57
338 339 5.047377 GTGGGTGTTACAATGTCCATGAATT 60.047 40.000 0.00 0.00 0.00 2.17
339 340 6.151985 GTGGGTGTTACAATGTCCATGAATTA 59.848 38.462 0.00 0.00 0.00 1.40
340 341 6.894654 TGGGTGTTACAATGTCCATGAATTAT 59.105 34.615 0.00 0.00 0.00 1.28
341 342 7.068103 TGGGTGTTACAATGTCCATGAATTATC 59.932 37.037 0.00 0.00 0.00 1.75
342 343 7.068103 GGGTGTTACAATGTCCATGAATTATCA 59.932 37.037 0.00 0.00 40.57 2.15
368 369 8.978874 TGTTATACAACATGGAGAATTGCTAT 57.021 30.769 0.00 0.00 39.75 2.97
369 370 8.839343 TGTTATACAACATGGAGAATTGCTATG 58.161 33.333 0.00 0.00 39.75 2.23
370 371 4.644103 ACAACATGGAGAATTGCTATGC 57.356 40.909 0.00 0.00 0.00 3.14
371 372 4.275810 ACAACATGGAGAATTGCTATGCT 58.724 39.130 0.00 0.00 0.00 3.79
372 373 5.439721 ACAACATGGAGAATTGCTATGCTA 58.560 37.500 0.00 0.00 0.00 3.49
373 374 5.297776 ACAACATGGAGAATTGCTATGCTAC 59.702 40.000 0.00 0.00 0.00 3.58
374 375 5.039920 ACATGGAGAATTGCTATGCTACA 57.960 39.130 3.26 3.26 34.57 2.74
375 376 5.061853 ACATGGAGAATTGCTATGCTACAG 58.938 41.667 7.18 2.53 33.50 2.74
376 377 3.470709 TGGAGAATTGCTATGCTACAGC 58.529 45.455 0.00 0.00 42.50 4.40
389 390 3.682372 GCTACAGCAGAGTAAAATGCC 57.318 47.619 0.00 0.00 43.60 4.40
390 391 3.009723 GCTACAGCAGAGTAAAATGCCA 58.990 45.455 0.00 0.00 43.60 4.92
391 392 3.629398 GCTACAGCAGAGTAAAATGCCAT 59.371 43.478 0.00 0.00 43.60 4.40
392 393 4.497006 GCTACAGCAGAGTAAAATGCCATG 60.497 45.833 0.00 0.00 43.60 3.66
393 394 2.165030 ACAGCAGAGTAAAATGCCATGC 59.835 45.455 0.00 0.00 43.60 4.06
394 395 2.426024 CAGCAGAGTAAAATGCCATGCT 59.574 45.455 0.00 0.00 43.60 3.79
395 396 3.628942 CAGCAGAGTAAAATGCCATGCTA 59.371 43.478 0.00 0.00 43.60 3.49
396 397 4.096833 CAGCAGAGTAAAATGCCATGCTAA 59.903 41.667 0.00 0.00 43.60 3.09
397 398 4.891756 AGCAGAGTAAAATGCCATGCTAAT 59.108 37.500 0.00 0.00 43.60 1.73
398 399 6.016860 CAGCAGAGTAAAATGCCATGCTAATA 60.017 38.462 0.00 0.00 43.60 0.98
399 400 6.206243 AGCAGAGTAAAATGCCATGCTAATAG 59.794 38.462 0.00 0.00 43.60 1.73
400 401 6.205464 GCAGAGTAAAATGCCATGCTAATAGA 59.795 38.462 0.00 0.00 36.41 1.98
401 402 7.572724 GCAGAGTAAAATGCCATGCTAATAGAG 60.573 40.741 0.00 0.00 36.41 2.43
402 403 7.658982 CAGAGTAAAATGCCATGCTAATAGAGA 59.341 37.037 0.00 0.00 0.00 3.10
403 404 8.213679 AGAGTAAAATGCCATGCTAATAGAGAA 58.786 33.333 0.00 0.00 0.00 2.87
404 405 8.752005 AGTAAAATGCCATGCTAATAGAGAAA 57.248 30.769 0.00 0.00 0.00 2.52
405 406 9.359653 AGTAAAATGCCATGCTAATAGAGAAAT 57.640 29.630 0.00 0.00 0.00 2.17
406 407 9.971922 GTAAAATGCCATGCTAATAGAGAAATT 57.028 29.630 0.00 0.00 0.00 1.82
407 408 8.882415 AAAATGCCATGCTAATAGAGAAATTG 57.118 30.769 0.00 0.00 0.00 2.32
408 409 5.443185 TGCCATGCTAATAGAGAAATTGC 57.557 39.130 0.00 0.00 0.00 3.56
409 410 4.279169 TGCCATGCTAATAGAGAAATTGCC 59.721 41.667 0.00 0.00 0.00 4.52
410 411 4.279169 GCCATGCTAATAGAGAAATTGCCA 59.721 41.667 0.00 0.00 0.00 4.92
411 412 5.766222 CCATGCTAATAGAGAAATTGCCAC 58.234 41.667 0.00 0.00 0.00 5.01
412 413 5.300034 CCATGCTAATAGAGAAATTGCCACA 59.700 40.000 0.00 0.00 0.00 4.17
413 414 5.818136 TGCTAATAGAGAAATTGCCACAC 57.182 39.130 0.00 0.00 0.00 3.82
414 415 5.252547 TGCTAATAGAGAAATTGCCACACA 58.747 37.500 0.00 0.00 0.00 3.72
415 416 5.887598 TGCTAATAGAGAAATTGCCACACAT 59.112 36.000 0.00 0.00 0.00 3.21
416 417 7.053498 TGCTAATAGAGAAATTGCCACACATA 58.947 34.615 0.00 0.00 0.00 2.29
417 418 7.720957 TGCTAATAGAGAAATTGCCACACATAT 59.279 33.333 0.00 0.00 0.00 1.78
418 419 8.571336 GCTAATAGAGAAATTGCCACACATATT 58.429 33.333 0.00 0.00 0.00 1.28
421 422 6.839124 AGAGAAATTGCCACACATATTTCA 57.161 33.333 0.00 0.00 37.76 2.69
422 423 7.230849 AGAGAAATTGCCACACATATTTCAA 57.769 32.000 0.00 0.00 37.76 2.69
423 424 7.318141 AGAGAAATTGCCACACATATTTCAAG 58.682 34.615 0.00 0.00 37.76 3.02
424 425 7.177216 AGAGAAATTGCCACACATATTTCAAGA 59.823 33.333 0.00 0.00 37.76 3.02
425 426 7.669427 AGAAATTGCCACACATATTTCAAGAA 58.331 30.769 0.00 0.00 37.76 2.52
426 427 8.149647 AGAAATTGCCACACATATTTCAAGAAA 58.850 29.630 0.00 0.00 37.76 2.52
427 428 8.851541 AAATTGCCACACATATTTCAAGAAAT 57.148 26.923 12.21 12.21 42.95 2.17
428 429 7.837202 ATTGCCACACATATTTCAAGAAATG 57.163 32.000 16.18 6.48 40.83 2.32
429 430 6.587206 TGCCACACATATTTCAAGAAATGA 57.413 33.333 16.18 3.62 40.83 2.57
430 431 6.389091 TGCCACACATATTTCAAGAAATGAC 58.611 36.000 16.18 0.00 40.83 3.06
431 432 6.015603 TGCCACACATATTTCAAGAAATGACA 60.016 34.615 16.18 0.00 40.83 3.58
432 433 7.037438 GCCACACATATTTCAAGAAATGACAT 58.963 34.615 16.18 1.82 40.83 3.06
433 434 7.009815 GCCACACATATTTCAAGAAATGACATG 59.990 37.037 16.18 13.87 40.83 3.21
434 435 8.030692 CCACACATATTTCAAGAAATGACATGT 58.969 33.333 16.18 14.38 40.83 3.21
435 436 9.414295 CACACATATTTCAAGAAATGACATGTT 57.586 29.630 16.18 7.86 40.83 2.71
442 443 9.850628 ATTTCAAGAAATGACATGTTACATCAG 57.149 29.630 0.00 0.00 39.36 2.90
443 444 8.620116 TTCAAGAAATGACATGTTACATCAGA 57.380 30.769 0.00 0.00 37.92 3.27
444 445 8.620116 TCAAGAAATGACATGTTACATCAGAA 57.380 30.769 0.00 0.00 31.50 3.02
445 446 8.724229 TCAAGAAATGACATGTTACATCAGAAG 58.276 33.333 0.00 0.00 31.50 2.85
446 447 8.724229 CAAGAAATGACATGTTACATCAGAAGA 58.276 33.333 0.00 0.00 0.00 2.87
447 448 8.853077 AGAAATGACATGTTACATCAGAAGAA 57.147 30.769 0.00 0.00 0.00 2.52
448 449 9.288576 AGAAATGACATGTTACATCAGAAGAAA 57.711 29.630 0.00 0.00 0.00 2.52
449 450 9.334693 GAAATGACATGTTACATCAGAAGAAAC 57.665 33.333 0.00 0.00 0.00 2.78
450 451 8.627208 AATGACATGTTACATCAGAAGAAACT 57.373 30.769 0.00 0.00 0.00 2.66
451 452 7.425577 TGACATGTTACATCAGAAGAAACTG 57.574 36.000 0.00 0.00 39.02 3.16
452 453 6.992123 TGACATGTTACATCAGAAGAAACTGT 59.008 34.615 0.00 0.00 38.79 3.55
453 454 7.171508 TGACATGTTACATCAGAAGAAACTGTC 59.828 37.037 0.00 0.00 38.79 3.51
454 455 6.428159 ACATGTTACATCAGAAGAAACTGTCC 59.572 38.462 0.00 0.00 38.79 4.02
455 456 6.174720 TGTTACATCAGAAGAAACTGTCCT 57.825 37.500 0.00 0.00 38.79 3.85
456 457 7.297936 TGTTACATCAGAAGAAACTGTCCTA 57.702 36.000 0.00 0.00 38.79 2.94
457 458 7.152645 TGTTACATCAGAAGAAACTGTCCTAC 58.847 38.462 0.00 0.00 38.79 3.18
458 459 7.015292 TGTTACATCAGAAGAAACTGTCCTACT 59.985 37.037 0.00 0.00 38.79 2.57
459 460 8.521176 GTTACATCAGAAGAAACTGTCCTACTA 58.479 37.037 0.00 0.00 38.79 1.82
467 468 6.192234 AGAAACTGTCCTACTATACACACG 57.808 41.667 0.00 0.00 0.00 4.49
480 481 7.667043 ACTATACACACGAAAATTGTCATGT 57.333 32.000 0.00 0.00 0.00 3.21
488 489 9.773328 CACACGAAAATTGTCATGTTCTATATT 57.227 29.630 0.00 0.00 0.00 1.28
519 520 9.505995 AAAATGACAATTGCTCAAAATTTTCAC 57.494 25.926 5.05 0.00 38.42 3.18
532 533 2.922740 TTTTCACTGTTCGCTAGGGT 57.077 45.000 6.70 0.00 0.00 4.34
541 542 0.616395 TTCGCTAGGGTGGTGGATGA 60.616 55.000 6.70 0.00 0.00 2.92
549 550 1.463674 GGTGGTGGATGAAGCGAATT 58.536 50.000 0.00 0.00 0.00 2.17
555 556 0.101219 GGATGAAGCGAATTGTGCCC 59.899 55.000 0.00 0.00 0.00 5.36
567 568 2.198827 TTGTGCCCGATGAAGATTGT 57.801 45.000 0.00 0.00 0.00 2.71
570 571 1.398390 GTGCCCGATGAAGATTGTCAC 59.602 52.381 0.00 0.00 0.00 3.67
571 572 1.003003 TGCCCGATGAAGATTGTCACA 59.997 47.619 0.00 0.00 0.00 3.58
584 585 2.064573 TGTCACACTATCACGTGCTG 57.935 50.000 11.67 5.71 38.45 4.41
586 587 2.254459 GTCACACTATCACGTGCTGAG 58.746 52.381 11.67 9.99 38.45 3.35
615 630 2.258286 GGGCGTTCGCTGCAAAAT 59.742 55.556 16.40 0.00 0.00 1.82
654 669 5.256352 GTTCGCTCATTATCTTTTCCGTTC 58.744 41.667 0.00 0.00 0.00 3.95
670 685 3.118956 TCCGTTCTGTGTTTTGGCAAAAT 60.119 39.130 26.41 0.00 32.22 1.82
671 686 3.620821 CCGTTCTGTGTTTTGGCAAAATT 59.379 39.130 26.41 0.00 32.22 1.82
672 687 4.493872 CCGTTCTGTGTTTTGGCAAAATTG 60.494 41.667 26.41 16.49 32.22 2.32
673 688 4.092675 CGTTCTGTGTTTTGGCAAAATTGT 59.907 37.500 26.41 0.00 32.22 2.71
674 689 5.390356 CGTTCTGTGTTTTGGCAAAATTGTT 60.390 36.000 26.41 0.00 32.22 2.83
677 692 6.974965 TCTGTGTTTTGGCAAAATTGTTTTT 58.025 28.000 26.41 0.00 35.41 1.94
713 728 4.761975 TCAACCACTCTGAACGTAACTTT 58.238 39.130 0.00 0.00 0.00 2.66
715 730 6.339730 TCAACCACTCTGAACGTAACTTTTA 58.660 36.000 0.00 0.00 0.00 1.52
721 736 8.504005 CCACTCTGAACGTAACTTTTATTTGAT 58.496 33.333 0.00 0.00 0.00 2.57
734 749 9.763465 AACTTTTATTTGATGTACGGATTTACG 57.237 29.630 0.00 0.00 40.31 3.18
740 755 2.178474 TGTACGGATTTACGTCGAGC 57.822 50.000 0.00 0.00 45.08 5.03
781 796 4.189231 GAGTCACACGGTTAGCCAATTAT 58.811 43.478 0.00 0.00 34.09 1.28
782 797 5.347620 AGTCACACGGTTAGCCAATTATA 57.652 39.130 0.00 0.00 34.09 0.98
783 798 5.357257 AGTCACACGGTTAGCCAATTATAG 58.643 41.667 0.00 0.00 34.09 1.31
784 799 5.105064 AGTCACACGGTTAGCCAATTATAGT 60.105 40.000 0.00 0.00 34.09 2.12
785 800 6.097270 AGTCACACGGTTAGCCAATTATAGTA 59.903 38.462 0.00 0.00 34.09 1.82
786 801 6.199719 GTCACACGGTTAGCCAATTATAGTAC 59.800 42.308 0.00 0.00 34.09 2.73
787 802 5.174398 CACACGGTTAGCCAATTATAGTACG 59.826 44.000 0.00 0.00 34.09 3.67
788 803 5.163519 ACACGGTTAGCCAATTATAGTACGT 60.164 40.000 0.00 0.00 34.09 3.57
813 829 5.567037 TCCTTGTGGAAGAAGAATTCAGA 57.433 39.130 8.44 0.00 40.10 3.27
885 908 3.248024 TGGATACCAACTCACAGAACCT 58.752 45.455 0.00 0.00 0.00 3.50
906 930 3.581024 TCCGTCCAATATATACACGCC 57.419 47.619 5.79 0.00 0.00 5.68
998 1023 3.993234 GATCGCATCGCACCGCAG 61.993 66.667 0.00 0.00 0.00 5.18
1095 1125 2.098831 GTACCACGCTTCCTTCGCC 61.099 63.158 0.00 0.00 0.00 5.54
1483 1513 2.347490 GCGTGAAGGGGCTCAGAA 59.653 61.111 0.00 0.00 0.00 3.02
1508 1538 2.277404 GAGAGAGGAGGCGGAGGT 59.723 66.667 0.00 0.00 0.00 3.85
1714 1750 3.306919 GGTTTACCTGTGGGATTCGTACA 60.307 47.826 0.00 0.00 36.25 2.90
1728 1764 6.455647 GGATTCGTACATCATTGATACCAGA 58.544 40.000 0.00 0.00 0.00 3.86
1735 1771 0.179048 CATTGATACCAGAGGCGGCA 60.179 55.000 13.08 0.00 0.00 5.69
1804 1840 0.250513 AGCAATCACGGAGAAGGACC 59.749 55.000 0.00 0.00 0.00 4.46
1974 2010 0.179205 CTTACCTGACGACGGACGAC 60.179 60.000 6.90 0.85 45.77 4.34
2121 2157 0.596600 TGTTGTTCGTGTCTCTCGGC 60.597 55.000 0.00 0.00 0.00 5.54
2165 2201 0.107848 AGGGCGATTTACTTGTCGGG 60.108 55.000 0.00 0.00 38.24 5.14
2207 2243 0.532573 GACGACAGCAATCAGGAGGA 59.467 55.000 0.00 0.00 0.00 3.71
2220 2256 0.469705 AGGAGGATGCTGATCTCGCT 60.470 55.000 0.00 0.00 32.93 4.93
2230 2266 0.614697 TGATCTCGCTGGGGAAGTCA 60.615 55.000 0.00 0.00 0.00 3.41
2273 2333 2.014857 CGACGATACTCAGGAGGTTGA 58.985 52.381 0.83 0.00 0.00 3.18
2289 2349 0.548031 TTGATGATCTGGCTGGGGAC 59.452 55.000 0.00 0.00 0.00 4.46
2294 2354 1.899437 GATCTGGCTGGGGACGTTGA 61.899 60.000 0.00 0.00 0.00 3.18
2304 2364 1.215647 GGACGTTGACGGAGATGCT 59.784 57.895 8.52 0.00 44.95 3.79
2421 2481 3.031013 TGTATCGGATTCAGAGGAGCAA 58.969 45.455 0.00 0.00 0.00 3.91
2452 2512 0.900421 ATCAGACTACAGCAGCAGCA 59.100 50.000 3.17 0.00 45.49 4.41
2547 2610 1.663739 GAGGTTCGGGTTTTTGCCC 59.336 57.895 0.00 0.00 45.21 5.36
2593 2659 3.311871 CAGTGATTCACTAAGCATCTGCC 59.688 47.826 18.59 0.00 43.43 4.85
2716 2783 2.359900 ACATCCAAATCTTCTCGTGGC 58.640 47.619 0.00 0.00 0.00 5.01
2717 2784 2.290260 ACATCCAAATCTTCTCGTGGCA 60.290 45.455 0.00 0.00 0.00 4.92
2718 2785 2.099141 TCCAAATCTTCTCGTGGCAG 57.901 50.000 0.00 0.00 0.00 4.85
2719 2786 1.089920 CCAAATCTTCTCGTGGCAGG 58.910 55.000 0.00 0.00 0.00 4.85
2720 2787 1.339055 CCAAATCTTCTCGTGGCAGGA 60.339 52.381 9.80 9.80 0.00 3.86
2721 2788 2.636830 CAAATCTTCTCGTGGCAGGAT 58.363 47.619 10.69 0.00 0.00 3.24
2722 2789 2.322355 AATCTTCTCGTGGCAGGATG 57.678 50.000 10.69 5.46 40.87 3.51
2723 2790 0.467384 ATCTTCTCGTGGCAGGATGG 59.533 55.000 10.69 0.08 35.86 3.51
2724 2791 1.153289 CTTCTCGTGGCAGGATGGG 60.153 63.158 10.69 0.00 35.86 4.00
2726 2793 1.617018 TTCTCGTGGCAGGATGGGAG 61.617 60.000 10.69 0.00 35.86 4.30
2727 2794 3.746949 CTCGTGGCAGGATGGGAGC 62.747 68.421 10.69 0.00 35.86 4.70
2731 2798 2.194326 GGCAGGATGGGAGCCTTC 59.806 66.667 0.00 0.00 44.92 3.46
2732 2799 2.381941 GGCAGGATGGGAGCCTTCT 61.382 63.158 0.00 0.00 44.92 2.85
2733 2800 1.148048 GCAGGATGGGAGCCTTCTC 59.852 63.158 0.00 0.00 35.98 2.87
2734 2801 1.445095 CAGGATGGGAGCCTTCTCG 59.555 63.158 0.00 0.00 40.26 4.04
2735 2802 1.002274 AGGATGGGAGCCTTCTCGT 59.998 57.895 0.00 0.00 40.26 4.18
2736 2803 1.144936 GGATGGGAGCCTTCTCGTG 59.855 63.158 0.00 0.00 40.26 4.35
2737 2804 1.144936 GATGGGAGCCTTCTCGTGG 59.855 63.158 0.00 0.00 40.26 4.94
2738 2805 1.306141 ATGGGAGCCTTCTCGTGGA 60.306 57.895 0.00 0.00 40.26 4.02
2739 2806 1.617947 ATGGGAGCCTTCTCGTGGAC 61.618 60.000 0.00 0.00 40.26 4.02
2740 2807 2.579738 GGAGCCTTCTCGTGGACC 59.420 66.667 0.00 0.00 40.26 4.46
2741 2808 2.283529 GGAGCCTTCTCGTGGACCA 61.284 63.158 0.00 0.00 40.26 4.02
2742 2809 1.079750 GAGCCTTCTCGTGGACCAC 60.080 63.158 15.13 15.13 0.00 4.16
2743 2810 1.816863 GAGCCTTCTCGTGGACCACA 61.817 60.000 24.18 10.50 33.40 4.17
2744 2811 1.668151 GCCTTCTCGTGGACCACAC 60.668 63.158 24.18 0.00 46.78 3.82
2887 2954 4.360027 CGCACGCAGCTGTCACAC 62.360 66.667 16.64 0.71 42.61 3.82
2900 2969 1.855978 TGTCACACGCACGTTTCTTAG 59.144 47.619 0.00 0.00 0.00 2.18
2909 2978 1.378119 CGTTTCTTAGGTGGGCCCC 60.378 63.158 22.27 10.91 34.57 5.80
2929 2998 3.979497 CCACCGCCCCTTTCCCTT 61.979 66.667 0.00 0.00 0.00 3.95
2931 3000 1.381076 CACCGCCCCTTTCCCTTAA 59.619 57.895 0.00 0.00 0.00 1.85
2959 3033 4.020751 TCTCCACAGAGACAAGATCCAAAG 60.021 45.833 0.00 0.00 44.42 2.77
2960 3034 3.903714 TCCACAGAGACAAGATCCAAAGA 59.096 43.478 0.00 0.00 0.00 2.52
2962 3036 5.013495 TCCACAGAGACAAGATCCAAAGATT 59.987 40.000 0.00 0.00 30.90 2.40
2963 3037 6.213397 TCCACAGAGACAAGATCCAAAGATTA 59.787 38.462 0.00 0.00 30.90 1.75
2965 3039 7.226325 CCACAGAGACAAGATCCAAAGATTATC 59.774 40.741 0.00 0.00 30.90 1.75
2966 3040 6.983307 ACAGAGACAAGATCCAAAGATTATCG 59.017 38.462 0.00 0.00 30.90 2.92
2968 3042 7.493971 CAGAGACAAGATCCAAAGATTATCGTT 59.506 37.037 0.00 0.00 30.90 3.85
2977 3060 4.273480 CCAAAGATTATCGTTCGCCTCATT 59.727 41.667 0.00 0.00 0.00 2.57
3021 3104 4.608514 TTCACCCCTGCCTCCCCA 62.609 66.667 0.00 0.00 0.00 4.96
3040 3202 0.324943 AACGTATTGGCTGAGGCTGT 59.675 50.000 7.74 0.00 38.73 4.40
3063 3229 1.078528 CCACCCCTTTCCCCCTTTC 59.921 63.158 0.00 0.00 0.00 2.62
3194 3360 4.717313 GCGAAAAGGGCGGGGACT 62.717 66.667 0.00 0.00 0.00 3.85
3232 3398 0.538584 ATGCTGCGACAGATGAGGAA 59.461 50.000 10.46 0.00 32.44 3.36
3273 3439 2.163815 TGGTTTTTCTTCAAACGGCGAA 59.836 40.909 16.62 0.00 37.50 4.70
3284 3451 2.047274 CGGCGAAGATGTGGTGGT 60.047 61.111 0.00 0.00 0.00 4.16
3289 3456 1.003839 GAAGATGTGGTGGTCGGCA 60.004 57.895 0.00 0.00 0.00 5.69
3332 3507 2.485814 TGCCTTTTGTTGTTGTTTTGCC 59.514 40.909 0.00 0.00 0.00 4.52
3342 3517 1.677052 GTTGTTTTGCCGGAACCACTA 59.323 47.619 5.05 0.00 0.00 2.74
3352 3527 4.082463 TGCCGGAACCACTATTGATTTTTC 60.082 41.667 5.05 0.00 0.00 2.29
3474 3685 0.037326 TCTGCTGTAACAAGCGAGGG 60.037 55.000 0.00 0.00 46.65 4.30
3475 3686 0.320771 CTGCTGTAACAAGCGAGGGT 60.321 55.000 0.00 0.00 46.65 4.34
3545 3756 6.678568 ACCATATCATTGTTTGGGAAAACA 57.321 33.333 0.04 0.04 40.54 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.213296 ATAACGACCAAGGGCCTCAT 58.787 50.000 6.46 0.00 0.00 2.90
1 2 0.988832 AATAACGACCAAGGGCCTCA 59.011 50.000 6.46 0.00 0.00 3.86
2 3 2.994186 TAATAACGACCAAGGGCCTC 57.006 50.000 6.46 0.00 0.00 4.70
4 5 2.927028 ACATAATAACGACCAAGGGCC 58.073 47.619 0.00 0.00 0.00 5.80
5 6 5.529800 ACAATACATAATAACGACCAAGGGC 59.470 40.000 0.00 0.00 0.00 5.19
6 7 7.562454 AACAATACATAATAACGACCAAGGG 57.438 36.000 0.00 0.00 0.00 3.95
10 11 9.537192 CCTAGAAACAATACATAATAACGACCA 57.463 33.333 0.00 0.00 0.00 4.02
11 12 9.538508 ACCTAGAAACAATACATAATAACGACC 57.461 33.333 0.00 0.00 0.00 4.79
21 22 9.201989 TCTACTGATCACCTAGAAACAATACAT 57.798 33.333 0.00 0.00 0.00 2.29
22 23 8.589701 TCTACTGATCACCTAGAAACAATACA 57.410 34.615 0.00 0.00 0.00 2.29
23 24 8.138712 CCTCTACTGATCACCTAGAAACAATAC 58.861 40.741 0.00 0.00 0.00 1.89
24 25 7.839705 ACCTCTACTGATCACCTAGAAACAATA 59.160 37.037 0.00 0.00 0.00 1.90
25 26 6.670027 ACCTCTACTGATCACCTAGAAACAAT 59.330 38.462 0.00 0.00 0.00 2.71
26 27 6.017192 ACCTCTACTGATCACCTAGAAACAA 58.983 40.000 0.00 0.00 0.00 2.83
27 28 5.419155 CACCTCTACTGATCACCTAGAAACA 59.581 44.000 0.00 0.00 0.00 2.83
28 29 5.680151 GCACCTCTACTGATCACCTAGAAAC 60.680 48.000 0.00 0.00 0.00 2.78
29 30 4.402793 GCACCTCTACTGATCACCTAGAAA 59.597 45.833 0.00 0.00 0.00 2.52
30 31 3.954904 GCACCTCTACTGATCACCTAGAA 59.045 47.826 0.00 0.00 0.00 2.10
31 32 3.556999 GCACCTCTACTGATCACCTAGA 58.443 50.000 0.00 0.00 0.00 2.43
32 33 2.625790 GGCACCTCTACTGATCACCTAG 59.374 54.545 0.00 0.00 0.00 3.02
33 34 2.667470 GGCACCTCTACTGATCACCTA 58.333 52.381 0.00 0.00 0.00 3.08
34 35 1.490574 GGCACCTCTACTGATCACCT 58.509 55.000 0.00 0.00 0.00 4.00
53 54 3.900892 CCCGATCGTCCCGACTGG 61.901 72.222 15.09 1.09 39.18 4.00
54 55 3.900892 CCCCGATCGTCCCGACTG 61.901 72.222 15.09 0.00 39.18 3.51
55 56 3.432445 ATCCCCGATCGTCCCGACT 62.432 63.158 15.09 0.00 39.18 4.18
56 57 2.910994 ATCCCCGATCGTCCCGAC 60.911 66.667 15.09 0.00 39.18 4.79
57 58 1.771783 TAGATCCCCGATCGTCCCGA 61.772 60.000 15.09 3.83 43.17 5.14
58 59 1.303074 TAGATCCCCGATCGTCCCG 60.303 63.158 15.09 0.00 43.17 5.14
59 60 1.596895 GCTAGATCCCCGATCGTCCC 61.597 65.000 15.09 0.00 43.17 4.46
60 61 0.894184 TGCTAGATCCCCGATCGTCC 60.894 60.000 15.09 0.00 43.17 4.79
61 62 1.178276 ATGCTAGATCCCCGATCGTC 58.822 55.000 15.09 4.78 43.17 4.20
62 63 1.633774 AATGCTAGATCCCCGATCGT 58.366 50.000 15.09 0.00 43.17 3.73
63 64 2.341257 CAAATGCTAGATCCCCGATCG 58.659 52.381 8.51 8.51 43.17 3.69
64 65 2.616510 CCCAAATGCTAGATCCCCGATC 60.617 54.545 0.00 0.00 39.17 3.69
65 66 1.352352 CCCAAATGCTAGATCCCCGAT 59.648 52.381 0.00 0.00 0.00 4.18
66 67 0.764890 CCCAAATGCTAGATCCCCGA 59.235 55.000 0.00 0.00 0.00 5.14
67 68 0.250901 CCCCAAATGCTAGATCCCCG 60.251 60.000 0.00 0.00 0.00 5.73
68 69 0.853530 ACCCCAAATGCTAGATCCCC 59.146 55.000 0.00 0.00 0.00 4.81
69 70 2.310538 CAACCCCAAATGCTAGATCCC 58.689 52.381 0.00 0.00 0.00 3.85
70 71 2.952310 GACAACCCCAAATGCTAGATCC 59.048 50.000 0.00 0.00 0.00 3.36
71 72 3.891049 AGACAACCCCAAATGCTAGATC 58.109 45.455 0.00 0.00 0.00 2.75
72 73 4.018050 AGAAGACAACCCCAAATGCTAGAT 60.018 41.667 0.00 0.00 0.00 1.98
73 74 3.330701 AGAAGACAACCCCAAATGCTAGA 59.669 43.478 0.00 0.00 0.00 2.43
74 75 3.690460 AGAAGACAACCCCAAATGCTAG 58.310 45.455 0.00 0.00 0.00 3.42
75 76 3.806949 AGAAGACAACCCCAAATGCTA 57.193 42.857 0.00 0.00 0.00 3.49
76 77 2.683211 AGAAGACAACCCCAAATGCT 57.317 45.000 0.00 0.00 0.00 3.79
77 78 3.751479 AAAGAAGACAACCCCAAATGC 57.249 42.857 0.00 0.00 0.00 3.56
78 79 5.275067 TGAAAAGAAGACAACCCCAAATG 57.725 39.130 0.00 0.00 0.00 2.32
79 80 6.499106 AATGAAAAGAAGACAACCCCAAAT 57.501 33.333 0.00 0.00 0.00 2.32
80 81 5.948742 AATGAAAAGAAGACAACCCCAAA 57.051 34.783 0.00 0.00 0.00 3.28
81 82 5.423610 TCAAATGAAAAGAAGACAACCCCAA 59.576 36.000 0.00 0.00 0.00 4.12
82 83 4.959210 TCAAATGAAAAGAAGACAACCCCA 59.041 37.500 0.00 0.00 0.00 4.96
83 84 5.529581 TCAAATGAAAAGAAGACAACCCC 57.470 39.130 0.00 0.00 0.00 4.95
84 85 6.573434 AGTTCAAATGAAAAGAAGACAACCC 58.427 36.000 0.00 0.00 35.58 4.11
85 86 7.759433 TCAAGTTCAAATGAAAAGAAGACAACC 59.241 33.333 0.00 0.00 35.58 3.77
86 87 8.587111 GTCAAGTTCAAATGAAAAGAAGACAAC 58.413 33.333 0.00 0.00 35.58 3.32
87 88 7.759433 GGTCAAGTTCAAATGAAAAGAAGACAA 59.241 33.333 0.00 0.00 35.58 3.18
88 89 7.257722 GGTCAAGTTCAAATGAAAAGAAGACA 58.742 34.615 0.00 0.00 35.58 3.41
89 90 6.414987 CGGTCAAGTTCAAATGAAAAGAAGAC 59.585 38.462 0.00 3.06 35.58 3.01
90 91 6.094881 ACGGTCAAGTTCAAATGAAAAGAAGA 59.905 34.615 0.00 0.00 35.58 2.87
91 92 6.265577 ACGGTCAAGTTCAAATGAAAAGAAG 58.734 36.000 0.00 0.00 35.58 2.85
92 93 6.202516 ACGGTCAAGTTCAAATGAAAAGAA 57.797 33.333 0.00 0.00 35.58 2.52
93 94 5.828299 ACGGTCAAGTTCAAATGAAAAGA 57.172 34.783 0.00 0.00 35.58 2.52
94 95 6.725246 ACTACGGTCAAGTTCAAATGAAAAG 58.275 36.000 0.00 0.00 35.58 2.27
95 96 6.510478 CGACTACGGTCAAGTTCAAATGAAAA 60.510 38.462 0.00 0.00 42.21 2.29
96 97 5.050634 CGACTACGGTCAAGTTCAAATGAAA 60.051 40.000 0.00 0.00 42.21 2.69
97 98 4.446385 CGACTACGGTCAAGTTCAAATGAA 59.554 41.667 0.00 0.00 42.21 2.57
98 99 3.985279 CGACTACGGTCAAGTTCAAATGA 59.015 43.478 0.00 0.00 42.21 2.57
99 100 4.307834 CGACTACGGTCAAGTTCAAATG 57.692 45.455 0.00 0.00 42.21 2.32
113 114 0.376152 ACACGCATAGACCGACTACG 59.624 55.000 0.00 0.00 39.43 3.51
114 115 3.892918 ATACACGCATAGACCGACTAC 57.107 47.619 0.00 0.00 33.62 2.73
115 116 4.336153 TCAAATACACGCATAGACCGACTA 59.664 41.667 0.00 0.00 35.42 2.59
116 117 3.129813 TCAAATACACGCATAGACCGACT 59.870 43.478 0.00 0.00 0.00 4.18
117 118 3.441163 TCAAATACACGCATAGACCGAC 58.559 45.455 0.00 0.00 0.00 4.79
118 119 3.786516 TCAAATACACGCATAGACCGA 57.213 42.857 0.00 0.00 0.00 4.69
119 120 4.506288 TCATTCAAATACACGCATAGACCG 59.494 41.667 0.00 0.00 0.00 4.79
120 121 5.984233 TCATTCAAATACACGCATAGACC 57.016 39.130 0.00 0.00 0.00 3.85
121 122 6.948353 ACATCATTCAAATACACGCATAGAC 58.052 36.000 0.00 0.00 0.00 2.59
122 123 8.711457 CATACATCATTCAAATACACGCATAGA 58.289 33.333 0.00 0.00 0.00 1.98
123 124 8.711457 TCATACATCATTCAAATACACGCATAG 58.289 33.333 0.00 0.00 0.00 2.23
124 125 8.600449 TCATACATCATTCAAATACACGCATA 57.400 30.769 0.00 0.00 0.00 3.14
125 126 7.495135 TCATACATCATTCAAATACACGCAT 57.505 32.000 0.00 0.00 0.00 4.73
126 127 6.917217 TCATACATCATTCAAATACACGCA 57.083 33.333 0.00 0.00 0.00 5.24
127 128 7.800767 AGATCATACATCATTCAAATACACGC 58.199 34.615 0.00 0.00 0.00 5.34
151 152 9.289303 GCCACTTCACACAATACATAAATTAAG 57.711 33.333 0.00 0.00 0.00 1.85
152 153 7.965655 CGCCACTTCACACAATACATAAATTAA 59.034 33.333 0.00 0.00 0.00 1.40
153 154 7.334671 TCGCCACTTCACACAATACATAAATTA 59.665 33.333 0.00 0.00 0.00 1.40
154 155 6.150307 TCGCCACTTCACACAATACATAAATT 59.850 34.615 0.00 0.00 0.00 1.82
155 156 5.645929 TCGCCACTTCACACAATACATAAAT 59.354 36.000 0.00 0.00 0.00 1.40
156 157 4.998033 TCGCCACTTCACACAATACATAAA 59.002 37.500 0.00 0.00 0.00 1.40
157 158 4.570930 TCGCCACTTCACACAATACATAA 58.429 39.130 0.00 0.00 0.00 1.90
158 159 4.195225 TCGCCACTTCACACAATACATA 57.805 40.909 0.00 0.00 0.00 2.29
159 160 3.052455 TCGCCACTTCACACAATACAT 57.948 42.857 0.00 0.00 0.00 2.29
160 161 2.535012 TCGCCACTTCACACAATACA 57.465 45.000 0.00 0.00 0.00 2.29
161 162 3.188460 ACAATCGCCACTTCACACAATAC 59.812 43.478 0.00 0.00 0.00 1.89
162 163 3.407698 ACAATCGCCACTTCACACAATA 58.592 40.909 0.00 0.00 0.00 1.90
163 164 2.229792 ACAATCGCCACTTCACACAAT 58.770 42.857 0.00 0.00 0.00 2.71
164 165 1.674359 ACAATCGCCACTTCACACAA 58.326 45.000 0.00 0.00 0.00 3.33
165 166 2.535012 TACAATCGCCACTTCACACA 57.465 45.000 0.00 0.00 0.00 3.72
166 167 2.412847 GCTTACAATCGCCACTTCACAC 60.413 50.000 0.00 0.00 0.00 3.82
167 168 1.804151 GCTTACAATCGCCACTTCACA 59.196 47.619 0.00 0.00 0.00 3.58
168 169 1.130561 GGCTTACAATCGCCACTTCAC 59.869 52.381 0.00 0.00 45.59 3.18
169 170 1.448985 GGCTTACAATCGCCACTTCA 58.551 50.000 0.00 0.00 45.59 3.02
175 176 1.666189 GAGAGTTGGCTTACAATCGCC 59.334 52.381 0.00 0.00 46.46 5.54
176 177 2.622436 AGAGAGTTGGCTTACAATCGC 58.378 47.619 0.00 0.00 41.95 4.58
177 178 6.018669 GGATAAAGAGAGTTGGCTTACAATCG 60.019 42.308 0.00 0.00 41.95 3.34
178 179 6.261158 GGGATAAAGAGAGTTGGCTTACAATC 59.739 42.308 0.00 0.00 41.95 2.67
179 180 6.122964 GGGATAAAGAGAGTTGGCTTACAAT 58.877 40.000 0.00 0.00 41.95 2.71
180 181 5.013704 TGGGATAAAGAGAGTTGGCTTACAA 59.986 40.000 0.00 0.00 36.54 2.41
181 182 4.534500 TGGGATAAAGAGAGTTGGCTTACA 59.466 41.667 0.00 0.00 0.00 2.41
182 183 5.099042 TGGGATAAAGAGAGTTGGCTTAC 57.901 43.478 0.00 0.00 0.00 2.34
183 184 5.975988 ATGGGATAAAGAGAGTTGGCTTA 57.024 39.130 0.00 0.00 0.00 3.09
184 185 4.870021 ATGGGATAAAGAGAGTTGGCTT 57.130 40.909 0.00 0.00 0.00 4.35
185 186 4.476479 AGAATGGGATAAAGAGAGTTGGCT 59.524 41.667 0.00 0.00 0.00 4.75
186 187 4.786425 AGAATGGGATAAAGAGAGTTGGC 58.214 43.478 0.00 0.00 0.00 4.52
187 188 6.183347 ACAAGAATGGGATAAAGAGAGTTGG 58.817 40.000 0.00 0.00 0.00 3.77
188 189 7.391554 TGAACAAGAATGGGATAAAGAGAGTTG 59.608 37.037 0.00 0.00 0.00 3.16
189 190 7.461749 TGAACAAGAATGGGATAAAGAGAGTT 58.538 34.615 0.00 0.00 0.00 3.01
190 191 7.020827 TGAACAAGAATGGGATAAAGAGAGT 57.979 36.000 0.00 0.00 0.00 3.24
191 192 8.517062 AATGAACAAGAATGGGATAAAGAGAG 57.483 34.615 0.00 0.00 0.00 3.20
192 193 9.396022 GTAATGAACAAGAATGGGATAAAGAGA 57.604 33.333 0.00 0.00 0.00 3.10
193 194 9.177608 TGTAATGAACAAGAATGGGATAAAGAG 57.822 33.333 0.00 0.00 34.29 2.85
194 195 9.699410 ATGTAATGAACAAGAATGGGATAAAGA 57.301 29.630 0.00 0.00 42.70 2.52
213 214 6.319405 TCATCTTCACACAATCCCATGTAATG 59.681 38.462 0.00 0.00 46.21 1.90
214 215 6.319658 GTCATCTTCACACAATCCCATGTAAT 59.680 38.462 0.00 0.00 30.84 1.89
215 216 5.647658 GTCATCTTCACACAATCCCATGTAA 59.352 40.000 0.00 0.00 30.84 2.41
216 217 5.185454 GTCATCTTCACACAATCCCATGTA 58.815 41.667 0.00 0.00 30.84 2.29
217 218 4.012374 GTCATCTTCACACAATCCCATGT 58.988 43.478 0.00 0.00 0.00 3.21
218 219 3.379372 GGTCATCTTCACACAATCCCATG 59.621 47.826 0.00 0.00 0.00 3.66
219 220 3.624777 GGTCATCTTCACACAATCCCAT 58.375 45.455 0.00 0.00 0.00 4.00
220 221 2.290896 GGGTCATCTTCACACAATCCCA 60.291 50.000 0.00 0.00 33.33 4.37
221 222 2.025887 AGGGTCATCTTCACACAATCCC 60.026 50.000 0.00 0.00 0.00 3.85
222 223 3.356529 AGGGTCATCTTCACACAATCC 57.643 47.619 0.00 0.00 0.00 3.01
223 224 4.583871 AGAAGGGTCATCTTCACACAATC 58.416 43.478 7.26 0.00 44.01 2.67
224 225 4.647564 AGAAGGGTCATCTTCACACAAT 57.352 40.909 7.26 0.00 44.01 2.71
225 226 4.136796 CAAGAAGGGTCATCTTCACACAA 58.863 43.478 7.26 0.00 44.01 3.33
226 227 3.743521 CAAGAAGGGTCATCTTCACACA 58.256 45.455 7.26 0.00 44.01 3.72
227 228 2.485814 GCAAGAAGGGTCATCTTCACAC 59.514 50.000 7.26 0.00 44.01 3.82
228 229 2.783135 GCAAGAAGGGTCATCTTCACA 58.217 47.619 7.26 0.00 44.01 3.58
229 230 1.734465 CGCAAGAAGGGTCATCTTCAC 59.266 52.381 7.26 0.00 44.01 3.18
230 231 2.099141 CGCAAGAAGGGTCATCTTCA 57.901 50.000 7.26 0.00 44.01 3.02
244 245 3.483574 CCGCATAGTAGTTTTGTCGCAAG 60.484 47.826 0.00 0.00 0.00 4.01
245 246 2.413796 CCGCATAGTAGTTTTGTCGCAA 59.586 45.455 0.00 0.00 0.00 4.85
246 247 1.996898 CCGCATAGTAGTTTTGTCGCA 59.003 47.619 0.00 0.00 0.00 5.10
247 248 1.997606 ACCGCATAGTAGTTTTGTCGC 59.002 47.619 0.00 0.00 0.00 5.19
248 249 5.724239 CATAACCGCATAGTAGTTTTGTCG 58.276 41.667 0.00 0.00 0.00 4.35
249 250 5.499047 GCATAACCGCATAGTAGTTTTGTC 58.501 41.667 0.00 0.00 0.00 3.18
250 251 4.334481 GGCATAACCGCATAGTAGTTTTGT 59.666 41.667 0.00 0.00 0.00 2.83
251 252 4.574828 AGGCATAACCGCATAGTAGTTTTG 59.425 41.667 0.00 0.00 46.52 2.44
252 253 4.777463 AGGCATAACCGCATAGTAGTTTT 58.223 39.130 0.00 0.00 46.52 2.43
253 254 4.101119 AGAGGCATAACCGCATAGTAGTTT 59.899 41.667 0.00 0.00 46.52 2.66
254 255 3.641906 AGAGGCATAACCGCATAGTAGTT 59.358 43.478 0.00 0.00 46.52 2.24
255 256 3.231818 AGAGGCATAACCGCATAGTAGT 58.768 45.455 0.00 0.00 46.52 2.73
256 257 3.944055 AGAGGCATAACCGCATAGTAG 57.056 47.619 0.00 0.00 46.52 2.57
257 258 4.831155 ACTTAGAGGCATAACCGCATAGTA 59.169 41.667 0.00 0.00 46.52 1.82
258 259 3.641906 ACTTAGAGGCATAACCGCATAGT 59.358 43.478 0.00 0.00 46.52 2.12
259 260 4.238514 GACTTAGAGGCATAACCGCATAG 58.761 47.826 0.00 0.00 46.52 2.23
260 261 3.305131 CGACTTAGAGGCATAACCGCATA 60.305 47.826 0.00 0.00 46.52 3.14
261 262 2.545952 CGACTTAGAGGCATAACCGCAT 60.546 50.000 0.00 0.00 46.52 4.73
262 263 1.202371 CGACTTAGAGGCATAACCGCA 60.202 52.381 0.00 0.00 46.52 5.69
263 264 1.202382 ACGACTTAGAGGCATAACCGC 60.202 52.381 0.00 0.00 46.52 5.68
264 265 2.460918 CACGACTTAGAGGCATAACCG 58.539 52.381 0.00 0.00 46.52 4.44
265 266 2.159085 AGCACGACTTAGAGGCATAACC 60.159 50.000 0.00 0.00 39.61 2.85
266 267 3.166489 AGCACGACTTAGAGGCATAAC 57.834 47.619 0.00 0.00 0.00 1.89
267 268 3.733988 CGAAGCACGACTTAGAGGCATAA 60.734 47.826 0.00 0.00 45.77 1.90
268 269 2.223502 CGAAGCACGACTTAGAGGCATA 60.224 50.000 0.00 0.00 45.77 3.14
269 270 1.469940 CGAAGCACGACTTAGAGGCAT 60.470 52.381 0.00 0.00 45.77 4.40
270 271 0.109272 CGAAGCACGACTTAGAGGCA 60.109 55.000 0.00 0.00 45.77 4.75
271 272 0.170561 TCGAAGCACGACTTAGAGGC 59.829 55.000 2.09 0.00 46.45 4.70
282 283 2.022129 CTCCCACGTGTCGAAGCAC 61.022 63.158 15.65 0.00 36.12 4.40
283 284 1.532604 ATCTCCCACGTGTCGAAGCA 61.533 55.000 15.65 0.00 0.00 3.91
284 285 0.454600 TATCTCCCACGTGTCGAAGC 59.545 55.000 15.65 0.00 0.00 3.86
285 286 3.609644 GCTATATCTCCCACGTGTCGAAG 60.610 52.174 15.65 6.13 0.00 3.79
286 287 2.292569 GCTATATCTCCCACGTGTCGAA 59.707 50.000 15.65 0.00 0.00 3.71
287 288 1.878088 GCTATATCTCCCACGTGTCGA 59.122 52.381 15.65 8.55 0.00 4.20
288 289 1.068472 GGCTATATCTCCCACGTGTCG 60.068 57.143 15.65 4.04 0.00 4.35
289 290 1.068472 CGGCTATATCTCCCACGTGTC 60.068 57.143 15.65 0.00 0.00 3.67
290 291 0.959553 CGGCTATATCTCCCACGTGT 59.040 55.000 15.65 0.00 0.00 4.49
291 292 0.388649 GCGGCTATATCTCCCACGTG 60.389 60.000 9.08 9.08 0.00 4.49
292 293 0.826256 TGCGGCTATATCTCCCACGT 60.826 55.000 0.00 0.00 0.00 4.49
293 294 0.532573 ATGCGGCTATATCTCCCACG 59.467 55.000 0.00 0.00 0.00 4.94
294 295 1.469940 CGATGCGGCTATATCTCCCAC 60.470 57.143 0.00 0.00 0.00 4.61
295 296 0.817654 CGATGCGGCTATATCTCCCA 59.182 55.000 0.00 0.00 0.00 4.37
296 297 0.818296 ACGATGCGGCTATATCTCCC 59.182 55.000 0.00 0.00 0.00 4.30
297 298 1.469940 CCACGATGCGGCTATATCTCC 60.470 57.143 0.00 0.00 0.00 3.71
298 299 1.469940 CCCACGATGCGGCTATATCTC 60.470 57.143 0.00 0.00 0.00 2.75
299 300 0.532573 CCCACGATGCGGCTATATCT 59.467 55.000 0.00 0.00 0.00 1.98
300 301 0.246635 ACCCACGATGCGGCTATATC 59.753 55.000 0.00 0.00 0.00 1.63
301 302 0.037326 CACCCACGATGCGGCTATAT 60.037 55.000 0.00 0.00 0.00 0.86
302 303 1.365999 CACCCACGATGCGGCTATA 59.634 57.895 0.00 0.00 0.00 1.31
303 304 2.108976 CACCCACGATGCGGCTAT 59.891 61.111 0.00 0.00 0.00 2.97
304 305 1.605971 TAACACCCACGATGCGGCTA 61.606 55.000 0.00 0.00 0.00 3.93
305 306 2.949909 TAACACCCACGATGCGGCT 61.950 57.895 0.00 0.00 0.00 5.52
306 307 2.435234 TAACACCCACGATGCGGC 60.435 61.111 0.00 0.00 0.00 6.53
307 308 0.951525 TTGTAACACCCACGATGCGG 60.952 55.000 0.00 0.00 0.00 5.69
308 309 1.083489 ATTGTAACACCCACGATGCG 58.917 50.000 0.00 0.00 0.00 4.73
309 310 1.810151 ACATTGTAACACCCACGATGC 59.190 47.619 0.00 0.00 40.18 3.91
310 311 2.418628 GGACATTGTAACACCCACGATG 59.581 50.000 0.00 1.95 41.63 3.84
311 312 2.039216 TGGACATTGTAACACCCACGAT 59.961 45.455 0.00 0.00 0.00 3.73
312 313 1.416772 TGGACATTGTAACACCCACGA 59.583 47.619 0.00 0.00 0.00 4.35
313 314 1.885560 TGGACATTGTAACACCCACG 58.114 50.000 0.00 0.00 0.00 4.94
314 315 3.417101 TCATGGACATTGTAACACCCAC 58.583 45.455 0.00 0.00 0.00 4.61
315 316 3.797559 TCATGGACATTGTAACACCCA 57.202 42.857 0.00 0.00 0.00 4.51
316 317 5.659440 AATTCATGGACATTGTAACACCC 57.341 39.130 0.00 0.00 0.00 4.61
317 318 7.995289 TGATAATTCATGGACATTGTAACACC 58.005 34.615 0.00 0.00 0.00 4.16
344 345 7.805071 GCATAGCAATTCTCCATGTTGTATAAC 59.195 37.037 0.00 0.00 37.32 1.89
345 346 7.720957 AGCATAGCAATTCTCCATGTTGTATAA 59.279 33.333 0.00 0.00 0.00 0.98
346 347 7.226441 AGCATAGCAATTCTCCATGTTGTATA 58.774 34.615 0.00 0.00 0.00 1.47
347 348 6.066690 AGCATAGCAATTCTCCATGTTGTAT 58.933 36.000 0.00 0.00 0.00 2.29
348 349 5.439721 AGCATAGCAATTCTCCATGTTGTA 58.560 37.500 0.00 0.00 0.00 2.41
349 350 4.275810 AGCATAGCAATTCTCCATGTTGT 58.724 39.130 0.00 0.00 0.00 3.32
350 351 4.913335 AGCATAGCAATTCTCCATGTTG 57.087 40.909 0.00 0.00 0.00 3.33
351 352 5.439721 TGTAGCATAGCAATTCTCCATGTT 58.560 37.500 0.00 0.00 0.00 2.71
352 353 5.039920 TGTAGCATAGCAATTCTCCATGT 57.960 39.130 0.00 0.00 0.00 3.21
353 354 4.083431 GCTGTAGCATAGCAATTCTCCATG 60.083 45.833 0.00 0.00 40.81 3.66
354 355 4.070716 GCTGTAGCATAGCAATTCTCCAT 58.929 43.478 0.00 0.00 40.81 3.41
355 356 3.470709 GCTGTAGCATAGCAATTCTCCA 58.529 45.455 0.00 0.00 40.81 3.86
369 370 3.009723 TGGCATTTTACTCTGCTGTAGC 58.990 45.455 0.00 0.00 38.45 3.58
370 371 4.497006 GCATGGCATTTTACTCTGCTGTAG 60.497 45.833 0.00 0.00 38.45 2.74
371 372 3.378112 GCATGGCATTTTACTCTGCTGTA 59.622 43.478 0.00 0.00 38.45 2.74
372 373 2.165030 GCATGGCATTTTACTCTGCTGT 59.835 45.455 0.00 0.00 38.45 4.40
373 374 2.426024 AGCATGGCATTTTACTCTGCTG 59.574 45.455 7.12 0.00 37.13 4.41
374 375 2.731572 AGCATGGCATTTTACTCTGCT 58.268 42.857 0.00 0.00 38.45 4.24
375 376 4.637483 TTAGCATGGCATTTTACTCTGC 57.363 40.909 0.00 0.00 37.66 4.26
376 377 7.658982 TCTCTATTAGCATGGCATTTTACTCTG 59.341 37.037 0.00 0.00 0.00 3.35
377 378 7.739825 TCTCTATTAGCATGGCATTTTACTCT 58.260 34.615 0.00 0.00 0.00 3.24
378 379 7.969536 TCTCTATTAGCATGGCATTTTACTC 57.030 36.000 0.00 0.00 0.00 2.59
379 380 8.752005 TTTCTCTATTAGCATGGCATTTTACT 57.248 30.769 0.00 0.00 0.00 2.24
380 381 9.971922 AATTTCTCTATTAGCATGGCATTTTAC 57.028 29.630 0.00 0.00 0.00 2.01
381 382 9.970395 CAATTTCTCTATTAGCATGGCATTTTA 57.030 29.630 0.00 0.00 0.00 1.52
382 383 7.440255 GCAATTTCTCTATTAGCATGGCATTTT 59.560 33.333 0.00 0.00 0.00 1.82
383 384 6.927381 GCAATTTCTCTATTAGCATGGCATTT 59.073 34.615 0.00 0.00 0.00 2.32
384 385 6.453092 GCAATTTCTCTATTAGCATGGCATT 58.547 36.000 0.00 0.00 0.00 3.56
385 386 5.047519 GGCAATTTCTCTATTAGCATGGCAT 60.048 40.000 0.00 0.00 0.00 4.40
386 387 4.279169 GGCAATTTCTCTATTAGCATGGCA 59.721 41.667 0.00 0.00 0.00 4.92
387 388 4.279169 TGGCAATTTCTCTATTAGCATGGC 59.721 41.667 0.00 0.00 0.00 4.40
388 389 5.300034 TGTGGCAATTTCTCTATTAGCATGG 59.700 40.000 0.00 0.00 0.00 3.66
389 390 6.183360 TGTGTGGCAATTTCTCTATTAGCATG 60.183 38.462 0.00 0.00 0.00 4.06
390 391 5.887598 TGTGTGGCAATTTCTCTATTAGCAT 59.112 36.000 0.00 0.00 0.00 3.79
391 392 5.252547 TGTGTGGCAATTTCTCTATTAGCA 58.747 37.500 0.00 0.00 0.00 3.49
392 393 5.818136 TGTGTGGCAATTTCTCTATTAGC 57.182 39.130 0.00 0.00 0.00 3.09
395 396 8.970020 TGAAATATGTGTGGCAATTTCTCTATT 58.030 29.630 17.67 2.63 36.58 1.73
396 397 8.523915 TGAAATATGTGTGGCAATTTCTCTAT 57.476 30.769 17.67 0.00 36.58 1.98
397 398 7.936496 TGAAATATGTGTGGCAATTTCTCTA 57.064 32.000 17.67 1.43 36.58 2.43
398 399 6.839124 TGAAATATGTGTGGCAATTTCTCT 57.161 33.333 17.67 0.00 36.58 3.10
399 400 7.315142 TCTTGAAATATGTGTGGCAATTTCTC 58.685 34.615 17.67 0.36 36.58 2.87
400 401 7.230849 TCTTGAAATATGTGTGGCAATTTCT 57.769 32.000 17.67 0.00 36.58 2.52
401 402 7.887996 TTCTTGAAATATGTGTGGCAATTTC 57.112 32.000 12.48 12.48 36.40 2.17
402 403 8.723311 CATTTCTTGAAATATGTGTGGCAATTT 58.277 29.630 8.09 0.00 0.00 1.82
403 404 8.095792 TCATTTCTTGAAATATGTGTGGCAATT 58.904 29.630 8.09 0.00 0.00 2.32
404 405 7.546667 GTCATTTCTTGAAATATGTGTGGCAAT 59.453 33.333 8.09 0.00 35.70 3.56
405 406 6.867816 GTCATTTCTTGAAATATGTGTGGCAA 59.132 34.615 8.09 0.00 35.70 4.52
406 407 6.015603 TGTCATTTCTTGAAATATGTGTGGCA 60.016 34.615 8.09 2.63 35.70 4.92
407 408 6.389091 TGTCATTTCTTGAAATATGTGTGGC 58.611 36.000 8.09 0.29 35.70 5.01
408 409 8.030692 ACATGTCATTTCTTGAAATATGTGTGG 58.969 33.333 16.04 3.17 35.78 4.17
409 410 8.975410 ACATGTCATTTCTTGAAATATGTGTG 57.025 30.769 16.04 11.04 35.78 3.82
416 417 9.850628 CTGATGTAACATGTCATTTCTTGAAAT 57.149 29.630 0.00 3.04 35.70 2.17
417 418 9.065798 TCTGATGTAACATGTCATTTCTTGAAA 57.934 29.630 0.00 0.00 35.70 2.69
418 419 8.620116 TCTGATGTAACATGTCATTTCTTGAA 57.380 30.769 0.00 0.00 35.70 2.69
419 420 8.620116 TTCTGATGTAACATGTCATTTCTTGA 57.380 30.769 0.00 0.00 0.00 3.02
420 421 8.724229 TCTTCTGATGTAACATGTCATTTCTTG 58.276 33.333 0.00 0.00 0.00 3.02
421 422 8.853077 TCTTCTGATGTAACATGTCATTTCTT 57.147 30.769 0.00 0.00 0.00 2.52
422 423 8.853077 TTCTTCTGATGTAACATGTCATTTCT 57.147 30.769 0.00 0.00 0.00 2.52
423 424 9.334693 GTTTCTTCTGATGTAACATGTCATTTC 57.665 33.333 0.00 0.00 0.00 2.17
424 425 9.071276 AGTTTCTTCTGATGTAACATGTCATTT 57.929 29.630 0.00 0.00 0.00 2.32
425 426 8.509690 CAGTTTCTTCTGATGTAACATGTCATT 58.490 33.333 0.00 0.00 37.61 2.57
426 427 7.663081 ACAGTTTCTTCTGATGTAACATGTCAT 59.337 33.333 0.00 0.00 38.63 3.06
427 428 6.992123 ACAGTTTCTTCTGATGTAACATGTCA 59.008 34.615 0.00 0.00 38.63 3.58
428 429 7.360438 GGACAGTTTCTTCTGATGTAACATGTC 60.360 40.741 20.53 20.53 38.63 3.06
429 430 6.428159 GGACAGTTTCTTCTGATGTAACATGT 59.572 38.462 13.00 12.81 38.63 3.21
430 431 6.652481 AGGACAGTTTCTTCTGATGTAACATG 59.348 38.462 13.00 0.00 38.63 3.21
431 432 6.773638 AGGACAGTTTCTTCTGATGTAACAT 58.226 36.000 13.00 0.00 38.63 2.71
432 433 6.174720 AGGACAGTTTCTTCTGATGTAACA 57.825 37.500 13.00 0.00 38.63 2.41
433 434 7.379750 AGTAGGACAGTTTCTTCTGATGTAAC 58.620 38.462 5.33 5.33 38.63 2.50
434 435 7.540474 AGTAGGACAGTTTCTTCTGATGTAA 57.460 36.000 0.65 0.00 38.63 2.41
435 436 8.824756 ATAGTAGGACAGTTTCTTCTGATGTA 57.175 34.615 0.65 0.00 38.63 2.29
436 437 7.726033 ATAGTAGGACAGTTTCTTCTGATGT 57.274 36.000 0.65 0.00 38.63 3.06
437 438 8.687242 TGTATAGTAGGACAGTTTCTTCTGATG 58.313 37.037 0.65 0.00 38.63 3.07
438 439 8.688151 GTGTATAGTAGGACAGTTTCTTCTGAT 58.312 37.037 0.65 0.00 38.63 2.90
439 440 7.668469 TGTGTATAGTAGGACAGTTTCTTCTGA 59.332 37.037 0.65 0.00 38.63 3.27
440 441 7.755822 GTGTGTATAGTAGGACAGTTTCTTCTG 59.244 40.741 0.00 0.00 40.80 3.02
441 442 7.361885 CGTGTGTATAGTAGGACAGTTTCTTCT 60.362 40.741 0.00 0.00 0.00 2.85
442 443 6.746364 CGTGTGTATAGTAGGACAGTTTCTTC 59.254 42.308 0.00 0.00 0.00 2.87
443 444 6.432162 TCGTGTGTATAGTAGGACAGTTTCTT 59.568 38.462 0.00 0.00 0.00 2.52
444 445 5.942236 TCGTGTGTATAGTAGGACAGTTTCT 59.058 40.000 0.00 0.00 0.00 2.52
445 446 6.187125 TCGTGTGTATAGTAGGACAGTTTC 57.813 41.667 0.00 0.00 0.00 2.78
446 447 6.579666 TTCGTGTGTATAGTAGGACAGTTT 57.420 37.500 0.00 0.00 0.00 2.66
447 448 6.579666 TTTCGTGTGTATAGTAGGACAGTT 57.420 37.500 0.00 0.00 0.00 3.16
448 449 6.579666 TTTTCGTGTGTATAGTAGGACAGT 57.420 37.500 0.00 0.00 0.00 3.55
449 450 7.544566 ACAATTTTCGTGTGTATAGTAGGACAG 59.455 37.037 0.00 0.00 0.00 3.51
450 451 7.380536 ACAATTTTCGTGTGTATAGTAGGACA 58.619 34.615 0.00 0.00 0.00 4.02
451 452 7.543172 TGACAATTTTCGTGTGTATAGTAGGAC 59.457 37.037 0.00 0.00 0.00 3.85
452 453 7.604549 TGACAATTTTCGTGTGTATAGTAGGA 58.395 34.615 0.00 0.00 0.00 2.94
453 454 7.821595 TGACAATTTTCGTGTGTATAGTAGG 57.178 36.000 0.00 0.00 0.00 3.18
454 455 8.869897 ACATGACAATTTTCGTGTGTATAGTAG 58.130 33.333 16.71 0.00 42.89 2.57
455 456 8.766000 ACATGACAATTTTCGTGTGTATAGTA 57.234 30.769 16.71 0.00 42.89 1.82
456 457 7.667043 ACATGACAATTTTCGTGTGTATAGT 57.333 32.000 16.71 0.00 42.89 2.12
457 458 8.443160 AGAACATGACAATTTTCGTGTGTATAG 58.557 33.333 17.84 0.00 43.57 1.31
458 459 8.317891 AGAACATGACAATTTTCGTGTGTATA 57.682 30.769 17.84 0.00 43.57 1.47
459 460 7.202016 AGAACATGACAATTTTCGTGTGTAT 57.798 32.000 17.84 5.06 43.57 2.29
499 500 7.464444 CGAACAGTGAAAATTTTGAGCAATTGT 60.464 33.333 8.47 6.05 0.00 2.71
516 517 0.830444 ACCACCCTAGCGAACAGTGA 60.830 55.000 0.00 0.00 0.00 3.41
519 520 1.079127 CCACCACCCTAGCGAACAG 60.079 63.158 0.00 0.00 0.00 3.16
532 533 1.811965 CACAATTCGCTTCATCCACCA 59.188 47.619 0.00 0.00 0.00 4.17
541 542 0.676466 TCATCGGGCACAATTCGCTT 60.676 50.000 0.00 0.00 0.00 4.68
549 550 1.003003 TGACAATCTTCATCGGGCACA 59.997 47.619 0.00 0.00 0.00 4.57
555 556 5.052106 CGTGATAGTGTGACAATCTTCATCG 60.052 44.000 0.00 0.00 0.00 3.84
567 568 2.159382 TCTCAGCACGTGATAGTGTGA 58.841 47.619 22.23 12.99 43.61 3.58
691 706 4.395959 AAGTTACGTTCAGAGTGGTTGA 57.604 40.909 0.00 0.00 0.00 3.18
694 709 7.496591 TCAAATAAAAGTTACGTTCAGAGTGGT 59.503 33.333 0.00 0.00 0.00 4.16
713 728 6.971756 TCGACGTAAATCCGTACATCAAATAA 59.028 34.615 0.00 0.00 41.98 1.40
715 730 5.342433 TCGACGTAAATCCGTACATCAAAT 58.658 37.500 0.00 0.00 41.98 2.32
721 736 1.202177 GGCTCGACGTAAATCCGTACA 60.202 52.381 0.00 0.00 41.98 2.90
733 748 0.315382 GATTGCGATTTGGCTCGACG 60.315 55.000 0.00 0.00 41.12 5.12
734 749 0.315382 CGATTGCGATTTGGCTCGAC 60.315 55.000 0.00 0.00 41.12 4.20
813 829 7.834881 TGATATAATCTTACTGGACGAACCT 57.165 36.000 0.00 0.00 39.86 3.50
885 908 3.321396 TGGCGTGTATATATTGGACGGAA 59.679 43.478 10.87 0.00 0.00 4.30
906 930 0.969149 GTGAAAAGGGAAGGGGCTTG 59.031 55.000 0.00 0.00 0.00 4.01
918 942 1.585297 ACGGGTGTTACGGTGAAAAG 58.415 50.000 0.00 0.00 35.23 2.27
997 1022 4.082523 CACCGGGACCGTCATGCT 62.083 66.667 6.32 0.00 37.81 3.79
998 1023 4.388499 ACACCGGGACCGTCATGC 62.388 66.667 6.32 0.00 37.81 4.06
1079 1109 4.699522 GGGCGAAGGAAGCGTGGT 62.700 66.667 0.00 0.00 35.00 4.16
1086 1116 1.686110 GAGGGAGAGGGCGAAGGAA 60.686 63.158 0.00 0.00 0.00 3.36
1095 1125 0.533308 CGAGGTAGACGAGGGAGAGG 60.533 65.000 0.00 0.00 0.00 3.69
1297 1327 1.990060 CCCTCGCCTTCCTCTCCAA 60.990 63.158 0.00 0.00 0.00 3.53
1348 1378 4.070552 GAGCCAGAGGAACGCCGT 62.071 66.667 0.00 0.00 39.96 5.68
1386 1416 0.806492 GGACGGTCGCCAGAAGATTC 60.806 60.000 1.43 0.00 0.00 2.52
1477 1507 4.116328 TCTCGGCGGCGTTCTGAG 62.116 66.667 31.06 20.12 38.09 3.35
1714 1750 1.271054 GCCGCCTCTGGTATCAATGAT 60.271 52.381 0.00 0.00 0.00 2.45
1735 1771 1.675641 GATTGGCCGTGTTCCTGCT 60.676 57.895 0.00 0.00 0.00 4.24
1740 1776 0.521735 GTCTTGGATTGGCCGTGTTC 59.478 55.000 0.00 0.00 40.66 3.18
2030 2066 0.719465 GTCTATTGCCAACACCGTCG 59.281 55.000 0.00 0.00 0.00 5.12
2121 2157 2.978010 AAGAACACCGCCTTGGCG 60.978 61.111 25.17 25.17 43.94 5.69
2183 2219 0.109086 CTGATTGCTGTCGTCGTCCT 60.109 55.000 0.00 0.00 0.00 3.85
2184 2220 1.078759 CCTGATTGCTGTCGTCGTCC 61.079 60.000 0.00 0.00 0.00 4.79
2185 2221 0.109272 TCCTGATTGCTGTCGTCGTC 60.109 55.000 0.00 0.00 0.00 4.20
2207 2243 1.340399 TTCCCCAGCGAGATCAGCAT 61.340 55.000 14.27 0.00 37.01 3.79
2214 2250 2.636412 CGTGACTTCCCCAGCGAGA 61.636 63.158 0.00 0.00 0.00 4.04
2220 2256 0.337082 TATCTCCCGTGACTTCCCCA 59.663 55.000 0.00 0.00 0.00 4.96
2273 2333 1.274703 AACGTCCCCAGCCAGATCAT 61.275 55.000 0.00 0.00 0.00 2.45
2289 2349 0.994995 CTTCAGCATCTCCGTCAACG 59.005 55.000 0.00 0.00 39.44 4.10
2294 2354 1.066573 CAGAACCTTCAGCATCTCCGT 60.067 52.381 0.00 0.00 0.00 4.69
2304 2364 2.104111 ACCAATGTCGTCAGAACCTTCA 59.896 45.455 0.00 0.00 0.00 3.02
2421 2481 0.598562 AGTCTGATTCTGCACGACGT 59.401 50.000 0.00 0.00 0.00 4.34
2701 2768 2.099141 TCCTGCCACGAGAAGATTTG 57.901 50.000 0.00 0.00 0.00 2.32
2716 2783 1.333636 ACGAGAAGGCTCCCATCCTG 61.334 60.000 0.00 0.00 37.91 3.86
2717 2784 1.002274 ACGAGAAGGCTCCCATCCT 59.998 57.895 0.00 0.00 37.91 3.24
2718 2785 1.144936 CACGAGAAGGCTCCCATCC 59.855 63.158 0.00 0.00 37.91 3.51
2719 2786 1.144936 CCACGAGAAGGCTCCCATC 59.855 63.158 0.00 0.00 37.91 3.51
2720 2787 1.306141 TCCACGAGAAGGCTCCCAT 60.306 57.895 0.00 0.00 37.91 4.00
2721 2788 2.119611 TCCACGAGAAGGCTCCCA 59.880 61.111 0.00 0.00 37.91 4.37
2722 2789 2.579738 GTCCACGAGAAGGCTCCC 59.420 66.667 0.00 0.00 37.91 4.30
2723 2790 2.283529 TGGTCCACGAGAAGGCTCC 61.284 63.158 0.00 0.00 37.91 4.70
2724 2791 1.079750 GTGGTCCACGAGAAGGCTC 60.080 63.158 6.18 0.00 37.81 4.70
2726 2793 1.668151 GTGTGGTCCACGAGAAGGC 60.668 63.158 17.27 0.00 37.14 4.35
2727 2794 4.675404 GTGTGGTCCACGAGAAGG 57.325 61.111 17.27 0.00 37.14 3.46
2734 2801 5.767816 AAATTAAGTGAAGTGTGGTCCAC 57.232 39.130 15.64 15.64 44.89 4.02
2735 2802 5.888724 TCAAAATTAAGTGAAGTGTGGTCCA 59.111 36.000 0.00 0.00 0.00 4.02
2736 2803 6.385649 TCAAAATTAAGTGAAGTGTGGTCC 57.614 37.500 0.00 0.00 0.00 4.46
2737 2804 6.918022 CCTTCAAAATTAAGTGAAGTGTGGTC 59.082 38.462 18.12 0.00 46.14 4.02
2738 2805 6.605594 TCCTTCAAAATTAAGTGAAGTGTGGT 59.394 34.615 18.12 0.00 46.14 4.16
2739 2806 7.038154 TCCTTCAAAATTAAGTGAAGTGTGG 57.962 36.000 18.12 9.28 46.14 4.17
2740 2807 8.925161 TTTCCTTCAAAATTAAGTGAAGTGTG 57.075 30.769 18.12 8.85 46.14 3.82
2741 2808 8.749354 ACTTTCCTTCAAAATTAAGTGAAGTGT 58.251 29.630 18.12 11.71 46.14 3.55
2742 2809 9.586435 AACTTTCCTTCAAAATTAAGTGAAGTG 57.414 29.630 18.12 12.68 46.14 3.16
2803 2870 6.758416 ACCGTTCCCGAGATACTATTTTTAAC 59.242 38.462 0.00 0.00 35.63 2.01
2811 2878 3.312421 CGTTTACCGTTCCCGAGATACTA 59.688 47.826 0.00 0.00 35.63 1.82
2815 2882 3.727419 CGTTTACCGTTCCCGAGAT 57.273 52.632 0.00 0.00 35.63 2.75
2877 2944 1.762222 GAAACGTGCGTGTGACAGCT 61.762 55.000 0.00 0.00 0.00 4.24
2887 2954 1.908066 GCCCACCTAAGAAACGTGCG 61.908 60.000 0.00 0.00 0.00 5.34
2959 3033 4.058817 AGGAAATGAGGCGAACGATAATC 58.941 43.478 0.00 0.00 0.00 1.75
2960 3034 4.058817 GAGGAAATGAGGCGAACGATAAT 58.941 43.478 0.00 0.00 0.00 1.28
2962 3036 2.693591 AGAGGAAATGAGGCGAACGATA 59.306 45.455 0.00 0.00 0.00 2.92
2963 3037 1.482593 AGAGGAAATGAGGCGAACGAT 59.517 47.619 0.00 0.00 0.00 3.73
2965 3039 1.002366 CAGAGGAAATGAGGCGAACG 58.998 55.000 0.00 0.00 0.00 3.95
2966 3040 0.729690 GCAGAGGAAATGAGGCGAAC 59.270 55.000 0.00 0.00 0.00 3.95
2968 3042 0.176680 GAGCAGAGGAAATGAGGCGA 59.823 55.000 0.00 0.00 0.00 5.54
3021 3104 0.324943 ACAGCCTCAGCCAATACGTT 59.675 50.000 0.00 0.00 41.25 3.99
3040 3202 2.861974 GGGAAAGGGGTGGTGGGA 60.862 66.667 0.00 0.00 0.00 4.37
3063 3229 1.785041 CGGTGGTGTTGCTCTTGGTG 61.785 60.000 0.00 0.00 0.00 4.17
3209 3375 0.247185 TCATCTGTCGCAGCATGTCA 59.753 50.000 0.00 0.00 39.31 3.58
3273 3439 1.302511 GTTGCCGACCACCACATCT 60.303 57.895 0.00 0.00 0.00 2.90
3309 3483 4.157649 GCAAAACAACAACAAAAGGCAAG 58.842 39.130 0.00 0.00 0.00 4.01
3332 3507 5.897377 AGGAAAAATCAATAGTGGTTCCG 57.103 39.130 0.00 0.00 0.00 4.30
3342 3517 7.391833 AGAAAGCGAGTTCTAGGAAAAATCAAT 59.608 33.333 0.00 0.00 36.06 2.57
3409 3605 3.110897 TATGCAGCAGGCCATCGCT 62.111 57.895 5.01 7.08 43.89 4.93
3436 3647 0.976641 AGTCGAATGCTGGTTCCAGA 59.023 50.000 21.32 7.98 36.24 3.86
3462 3673 1.373748 GCACGACCCTCGCTTGTTA 60.374 57.895 0.00 0.00 45.12 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.