Multiple sequence alignment - TraesCS2B01G398700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G398700 chr2B 100.000 4566 0 0 1 4566 566393507 566388942 0.000000e+00 8432
1 TraesCS2B01G398700 chr2B 86.719 1649 203 6 2042 3679 687206746 687205103 0.000000e+00 1818
2 TraesCS2B01G398700 chr2B 86.759 1586 193 7 2023 3592 566402458 566400874 0.000000e+00 1749
3 TraesCS2B01G398700 chr2B 82.729 1158 175 18 774 1915 566403665 566402517 0.000000e+00 1007
4 TraesCS2B01G398700 chr2B 77.007 1009 210 15 960 1951 768060340 768059337 3.990000e-155 558
5 TraesCS2B01G398700 chr2A 93.087 2546 127 11 2001 4517 624943042 624940517 0.000000e+00 3681
6 TraesCS2B01G398700 chr2A 93.172 1406 84 10 548 1948 624944460 624943062 0.000000e+00 2054
7 TraesCS2B01G398700 chr2A 85.884 1686 219 8 2023 3695 624966959 624965280 0.000000e+00 1777
8 TraesCS2B01G398700 chr2A 86.000 1650 215 7 2042 3679 711467146 711465501 0.000000e+00 1753
9 TraesCS2B01G398700 chr2A 81.933 1190 194 17 771 1945 711468359 711467176 0.000000e+00 987
10 TraesCS2B01G398700 chr2A 81.736 1210 192 20 757 1951 624968172 624966977 0.000000e+00 983
11 TraesCS2B01G398700 chr2A 89.968 309 24 4 240 547 624944814 624944512 4.280000e-105 392
12 TraesCS2B01G398700 chr2A 95.122 205 9 1 26 229 624945180 624944976 5.700000e-84 322
13 TraesCS2B01G398700 chr2D 92.162 2590 143 12 2001 4560 482350067 482347508 0.000000e+00 3603
14 TraesCS2B01G398700 chr2D 87.083 1649 196 8 2042 3679 572256484 572254842 0.000000e+00 1849
15 TraesCS2B01G398700 chr2D 86.458 1691 204 12 2023 3695 482381556 482379873 0.000000e+00 1831
16 TraesCS2B01G398700 chr2D 86.562 1332 166 8 2321 3645 626593949 626592624 0.000000e+00 1456
17 TraesCS2B01G398700 chr2D 91.456 1030 80 6 927 1951 482351112 482350086 0.000000e+00 1408
18 TraesCS2B01G398700 chr2D 82.594 1195 185 15 757 1939 482382768 482381585 0.000000e+00 1033
19 TraesCS2B01G398700 chr2D 81.902 1083 179 14 877 1945 572257593 572256514 0.000000e+00 898
20 TraesCS2B01G398700 chr2D 87.713 529 44 7 26 547 482357656 482357142 8.460000e-167 597
21 TraesCS2B01G398700 chr2D 77.932 938 191 12 960 1886 626595309 626594377 5.120000e-159 571


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G398700 chr2B 566388942 566393507 4565 True 8432.00 8432 100.00000 1 4566 1 chr2B.!!$R1 4565
1 TraesCS2B01G398700 chr2B 687205103 687206746 1643 True 1818.00 1818 86.71900 2042 3679 1 chr2B.!!$R2 1637
2 TraesCS2B01G398700 chr2B 566400874 566403665 2791 True 1378.00 1749 84.74400 774 3592 2 chr2B.!!$R4 2818
3 TraesCS2B01G398700 chr2B 768059337 768060340 1003 True 558.00 558 77.00700 960 1951 1 chr2B.!!$R3 991
4 TraesCS2B01G398700 chr2A 624940517 624945180 4663 True 1612.25 3681 92.83725 26 4517 4 chr2A.!!$R1 4491
5 TraesCS2B01G398700 chr2A 624965280 624968172 2892 True 1380.00 1777 83.81000 757 3695 2 chr2A.!!$R2 2938
6 TraesCS2B01G398700 chr2A 711465501 711468359 2858 True 1370.00 1753 83.96650 771 3679 2 chr2A.!!$R3 2908
7 TraesCS2B01G398700 chr2D 482347508 482351112 3604 True 2505.50 3603 91.80900 927 4560 2 chr2D.!!$R2 3633
8 TraesCS2B01G398700 chr2D 482379873 482382768 2895 True 1432.00 1831 84.52600 757 3695 2 chr2D.!!$R3 2938
9 TraesCS2B01G398700 chr2D 572254842 572257593 2751 True 1373.50 1849 84.49250 877 3679 2 chr2D.!!$R4 2802
10 TraesCS2B01G398700 chr2D 626592624 626595309 2685 True 1013.50 1456 82.24700 960 3645 2 chr2D.!!$R5 2685
11 TraesCS2B01G398700 chr2D 482357142 482357656 514 True 597.00 597 87.71300 26 547 1 chr2D.!!$R1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.598419 GCACCCTGCTCAAACAAAGC 60.598 55.000 0.00 0.0 40.96 3.51 F
924 1145 1.203162 ACCACATGGCCTCCATTTTCA 60.203 47.619 3.32 0.0 42.23 2.69 F
1434 1673 0.249120 CCGACTACAATGGCACTGGA 59.751 55.000 0.00 0.0 0.00 3.86 F
1490 1729 2.826128 TGTCAGACTTAGCAGACGGATT 59.174 45.455 1.31 0.0 33.83 3.01 F
2566 2873 2.881074 TCAGAAGCTCAACTCATACGC 58.119 47.619 0.00 0.0 0.00 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1321 1554 0.030369 GGTCGACCTACATAGCCACG 59.970 60.000 27.64 0.00 0.00 4.94 R
2566 2873 1.393539 CTATTGAAGTTGTCGGTGGCG 59.606 52.381 0.00 0.00 0.00 5.69 R
2998 3308 0.398318 AGGCTCCAAAGTCTGACACC 59.602 55.000 10.88 0.07 35.67 4.16 R
3307 3617 1.605058 TAGCGAGGTCTGCAAGTCCC 61.605 60.000 0.00 0.00 43.64 4.46 R
4303 4615 0.110688 CTCACCGAATTGCACACGTG 60.111 55.000 15.48 15.48 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.250464 TGTTTAGGCTGTAATCAACTCCG 58.750 43.478 0.00 0.00 0.00 4.63
23 24 4.251268 GTTTAGGCTGTAATCAACTCCGT 58.749 43.478 0.00 0.00 0.00 4.69
24 25 2.386661 AGGCTGTAATCAACTCCGTG 57.613 50.000 0.00 0.00 0.00 4.94
64 65 3.580904 TGTTCCGGAACAGAGAACG 57.419 52.632 39.59 0.00 45.42 3.95
67 68 0.599204 TTCCGGAACAGAGAACGTGC 60.599 55.000 14.35 0.00 0.00 5.34
153 154 0.598419 GCACCCTGCTCAAACAAAGC 60.598 55.000 0.00 0.00 40.96 3.51
189 190 5.538118 AGACTGAAATTACGATGTGTGTGA 58.462 37.500 0.00 0.00 0.00 3.58
210 211 4.457603 TGAGTGTTAATTGACCAATTCCCG 59.542 41.667 10.85 0.00 40.99 5.14
211 212 4.403734 AGTGTTAATTGACCAATTCCCGT 58.596 39.130 10.85 0.00 40.99 5.28
212 213 4.830600 AGTGTTAATTGACCAATTCCCGTT 59.169 37.500 10.85 0.00 40.99 4.44
213 214 5.303333 AGTGTTAATTGACCAATTCCCGTTT 59.697 36.000 10.85 0.00 40.99 3.60
234 235 6.571887 CGTTTGTTTGTTTGTTTGTTTCTTCC 59.428 34.615 0.00 0.00 0.00 3.46
235 236 5.830900 TGTTTGTTTGTTTGTTTCTTCCG 57.169 34.783 0.00 0.00 0.00 4.30
237 238 4.522722 TTGTTTGTTTGTTTCTTCCGGT 57.477 36.364 0.00 0.00 0.00 5.28
247 403 3.067461 TGTTTCTTCCGGTGAACCAATTG 59.933 43.478 0.00 0.00 35.14 2.32
248 404 2.649531 TCTTCCGGTGAACCAATTGT 57.350 45.000 0.00 0.00 35.14 2.71
273 429 7.747357 GTCGTTTGTTAAAAGAAAGAGTCACAA 59.253 33.333 0.00 0.00 30.91 3.33
295 451 4.890158 ATGTTTCTTTGTTGGGGGAATC 57.110 40.909 0.00 0.00 0.00 2.52
352 509 3.511934 AGTCTGCTCCGTTTAATCTCACT 59.488 43.478 0.00 0.00 0.00 3.41
356 513 3.767673 TGCTCCGTTTAATCTCACTAGGT 59.232 43.478 0.00 0.00 0.00 3.08
410 574 5.997746 TGCTGTGCTTAATTTGACTAGTTCT 59.002 36.000 0.00 0.00 0.00 3.01
442 606 2.628657 ACAGTTAACGTCCAGAGCTCTT 59.371 45.455 15.27 0.20 0.00 2.85
454 618 4.645136 TCCAGAGCTCTTCGTGTGTATATT 59.355 41.667 15.27 0.00 0.00 1.28
455 619 5.127194 TCCAGAGCTCTTCGTGTGTATATTT 59.873 40.000 15.27 0.00 0.00 1.40
457 621 6.418226 CCAGAGCTCTTCGTGTGTATATTTAC 59.582 42.308 15.27 0.00 0.00 2.01
459 623 7.649705 CAGAGCTCTTCGTGTGTATATTTACAT 59.350 37.037 15.27 0.00 40.35 2.29
460 624 8.847196 AGAGCTCTTCGTGTGTATATTTACATA 58.153 33.333 11.45 0.00 40.35 2.29
461 625 9.119329 GAGCTCTTCGTGTGTATATTTACATAG 57.881 37.037 6.43 0.00 40.35 2.23
462 626 8.847196 AGCTCTTCGTGTGTATATTTACATAGA 58.153 33.333 0.00 0.00 40.35 1.98
509 673 3.382227 TGTCTTCAGAACACAAGTACGGA 59.618 43.478 0.00 0.00 0.00 4.69
510 674 4.142116 TGTCTTCAGAACACAAGTACGGAA 60.142 41.667 0.00 0.00 0.00 4.30
511 675 4.989168 GTCTTCAGAACACAAGTACGGAAT 59.011 41.667 0.00 0.00 0.00 3.01
528 692 3.191371 CGGAATAAGCAAGCTCCAAACTT 59.809 43.478 0.00 0.00 0.00 2.66
618 833 3.181500 ACAAGCTTTCAGTTCGTGTTTCC 60.181 43.478 0.00 0.00 0.00 3.13
626 841 3.985279 TCAGTTCGTGTTTCCGACTTATG 59.015 43.478 0.00 0.00 36.42 1.90
637 853 2.429610 TCCGACTTATGTAAGCCTGGAC 59.570 50.000 0.00 0.00 36.79 4.02
653 869 3.181471 CCTGGACGCTAAGAACATGAGAT 60.181 47.826 0.00 0.00 0.00 2.75
661 877 4.084118 GCTAAGAACATGAGATGAATCGCC 60.084 45.833 0.00 0.00 0.00 5.54
662 878 2.477825 AGAACATGAGATGAATCGCCG 58.522 47.619 0.00 0.00 0.00 6.46
685 901 1.369625 CCATCTAACGGCAGACAACC 58.630 55.000 0.00 0.00 0.00 3.77
690 906 3.857052 TCTAACGGCAGACAACCAATAG 58.143 45.455 0.00 0.00 0.00 1.73
723 939 1.340991 ACTTCTGCACCCTTGTGTTGT 60.341 47.619 0.00 0.00 44.65 3.32
742 958 2.623416 TGTGACCTGTGACTGTGAGTAG 59.377 50.000 0.00 0.00 0.00 2.57
752 968 3.243873 TGACTGTGAGTAGGTTGCTGAAG 60.244 47.826 0.00 0.00 0.00 3.02
789 1006 4.154918 GGTCGAATCTGTTCTTGCTTTGAT 59.845 41.667 0.00 0.00 32.00 2.57
808 1025 4.697514 TGATAGCAGATCCTAGTTTGTGC 58.302 43.478 3.82 3.82 0.00 4.57
827 1044 9.013490 GTTTGTGCAGACTTATATAGCAAAATG 57.987 33.333 0.00 0.00 36.91 2.32
832 1052 8.122330 TGCAGACTTATATAGCAAAATGTTTCG 58.878 33.333 0.00 0.00 31.42 3.46
846 1066 7.591426 GCAAAATGTTTCGTTTCTGTTATCTCT 59.409 33.333 0.00 0.00 0.00 3.10
853 1073 6.145338 TCGTTTCTGTTATCTCTGGATACC 57.855 41.667 0.00 0.00 34.54 2.73
923 1144 1.560505 ACCACATGGCCTCCATTTTC 58.439 50.000 3.32 0.00 42.23 2.29
924 1145 1.203162 ACCACATGGCCTCCATTTTCA 60.203 47.619 3.32 0.00 42.23 2.69
925 1146 1.205417 CCACATGGCCTCCATTTTCAC 59.795 52.381 3.32 0.00 42.23 3.18
933 1154 2.299867 GCCTCCATTTTCACACAACCAT 59.700 45.455 0.00 0.00 0.00 3.55
937 1158 5.236911 CCTCCATTTTCACACAACCATTTTG 59.763 40.000 0.00 0.00 0.00 2.44
938 1159 5.738909 TCCATTTTCACACAACCATTTTGT 58.261 33.333 0.00 0.00 0.00 2.83
948 1169 8.019669 TCACACAACCATTTTGTTTTTCATTTG 58.980 29.630 0.00 0.00 0.00 2.32
1321 1554 1.963747 CATGAAGTTTTTCGGCCGTC 58.036 50.000 27.15 14.06 36.04 4.79
1322 1555 0.515564 ATGAAGTTTTTCGGCCGTCG 59.484 50.000 27.15 0.00 36.04 5.12
1434 1673 0.249120 CCGACTACAATGGCACTGGA 59.751 55.000 0.00 0.00 0.00 3.86
1490 1729 2.826128 TGTCAGACTTAGCAGACGGATT 59.174 45.455 1.31 0.00 33.83 3.01
1761 2000 7.086376 GTGATGTTGCAAAACAGAATATGACT 58.914 34.615 0.00 0.00 35.95 3.41
1765 2004 5.375417 TGCAAAACAGAATATGACTGGTG 57.625 39.130 12.64 9.25 39.38 4.17
1906 2155 6.823689 AGGTATGGATTAACATTGAGTGTCAC 59.176 38.462 0.00 0.00 41.14 3.67
1948 2203 4.264253 TCATCAAACTGCACCTTGGATAG 58.736 43.478 3.75 0.00 0.00 2.08
1949 2204 3.788227 TCAAACTGCACCTTGGATAGT 57.212 42.857 3.75 0.00 0.00 2.12
1950 2205 4.901197 TCAAACTGCACCTTGGATAGTA 57.099 40.909 3.75 0.00 0.00 1.82
1951 2206 5.435686 TCAAACTGCACCTTGGATAGTAT 57.564 39.130 3.75 0.00 0.00 2.12
1952 2207 6.553953 TCAAACTGCACCTTGGATAGTATA 57.446 37.500 3.75 0.00 0.00 1.47
1953 2208 7.136822 TCAAACTGCACCTTGGATAGTATAT 57.863 36.000 3.75 0.00 0.00 0.86
1954 2209 8.257602 TCAAACTGCACCTTGGATAGTATATA 57.742 34.615 3.75 0.00 0.00 0.86
1955 2210 8.880244 TCAAACTGCACCTTGGATAGTATATAT 58.120 33.333 3.75 0.00 0.00 0.86
1956 2211 8.939929 CAAACTGCACCTTGGATAGTATATATG 58.060 37.037 0.00 0.00 0.00 1.78
1957 2212 6.644347 ACTGCACCTTGGATAGTATATATGC 58.356 40.000 0.00 0.00 0.00 3.14
1958 2213 6.213397 ACTGCACCTTGGATAGTATATATGCA 59.787 38.462 3.52 0.00 37.72 3.96
1959 2214 6.406370 TGCACCTTGGATAGTATATATGCAC 58.594 40.000 3.52 0.00 34.62 4.57
1960 2215 6.213397 TGCACCTTGGATAGTATATATGCACT 59.787 38.462 3.52 0.00 34.62 4.40
1961 2216 7.398904 TGCACCTTGGATAGTATATATGCACTA 59.601 37.037 3.52 1.12 34.62 2.74
1962 2217 8.258007 GCACCTTGGATAGTATATATGCACTAA 58.742 37.037 3.52 0.00 31.35 2.24
1977 2232 5.900865 TGCACTAATGATCATCAAAAGCA 57.099 34.783 9.06 12.69 0.00 3.91
1978 2233 6.270156 TGCACTAATGATCATCAAAAGCAA 57.730 33.333 9.06 0.00 0.00 3.91
1979 2234 6.327154 TGCACTAATGATCATCAAAAGCAAG 58.673 36.000 9.06 0.20 0.00 4.01
1980 2235 6.151480 TGCACTAATGATCATCAAAAGCAAGA 59.849 34.615 9.06 0.00 0.00 3.02
1984 2239 5.831702 ATGATCATCAAAAGCAAGACCTC 57.168 39.130 1.18 0.00 0.00 3.85
1993 2248 6.769512 TCAAAAGCAAGACCTCTACATTACT 58.230 36.000 0.00 0.00 0.00 2.24
1994 2249 7.224297 TCAAAAGCAAGACCTCTACATTACTT 58.776 34.615 0.00 0.00 0.00 2.24
1995 2250 8.372459 TCAAAAGCAAGACCTCTACATTACTTA 58.628 33.333 0.00 0.00 0.00 2.24
1996 2251 8.443937 CAAAAGCAAGACCTCTACATTACTTAC 58.556 37.037 0.00 0.00 0.00 2.34
1997 2252 6.852420 AGCAAGACCTCTACATTACTTACA 57.148 37.500 0.00 0.00 0.00 2.41
1998 2253 7.241042 AGCAAGACCTCTACATTACTTACAA 57.759 36.000 0.00 0.00 0.00 2.41
1999 2254 7.324178 AGCAAGACCTCTACATTACTTACAAG 58.676 38.462 0.00 0.00 0.00 3.16
2114 2372 4.016444 GCCCTTCAGATGGTTATTGTCAA 58.984 43.478 1.75 0.00 0.00 3.18
2335 2641 3.203487 AGTGTCCCTCTCCCTAGTCTAAG 59.797 52.174 0.00 0.00 0.00 2.18
2442 2749 5.197224 TGGGGACAGATGAGAATTCAAAT 57.803 39.130 8.44 0.12 34.29 2.32
2566 2873 2.881074 TCAGAAGCTCAACTCATACGC 58.119 47.619 0.00 0.00 0.00 4.42
2870 3180 5.927281 AGCATTGCAAATATCCTTCAGTT 57.073 34.783 11.91 0.00 0.00 3.16
2998 3308 6.656270 TGCTTGATGATAACTATATGGCCAAG 59.344 38.462 10.96 5.19 0.00 3.61
3088 3398 4.263156 GGTACTTGTGGTTACCTTGATCCA 60.263 45.833 2.07 0.00 0.00 3.41
3133 3443 6.426937 AGTTAACAGACAAAAGCGATGTGTAT 59.573 34.615 8.61 0.00 0.00 2.29
3294 3604 3.172229 TGTAAAAGGCCAACAAAGCAC 57.828 42.857 5.01 0.00 0.00 4.40
3307 3617 1.498865 AAAGCACGGAGTTGCTGACG 61.499 55.000 0.00 0.00 41.61 4.35
3322 3632 1.079750 GACGGGACTTGCAGACCTC 60.080 63.158 6.01 0.00 30.67 3.85
3439 3749 0.104304 GGGTACGGCTCGATGTTGAT 59.896 55.000 1.50 0.00 0.00 2.57
3466 3776 1.266989 GCAGAAAACCTTCTTGGACGG 59.733 52.381 0.00 0.00 40.05 4.79
3725 4037 4.201980 TGCTGCTATTTGATCTGATTGTGC 60.202 41.667 0.00 0.00 0.00 4.57
3944 4256 4.539235 AAAAATTCCTGCCCGGCT 57.461 50.000 11.61 0.00 0.00 5.52
3981 4293 7.834881 AAATGCACATAATCCATGAAGATCT 57.165 32.000 0.00 0.00 38.10 2.75
4001 4313 6.934645 AGATCTGAACACACGAAAAGGAAATA 59.065 34.615 0.00 0.00 0.00 1.40
4002 4314 7.607991 AGATCTGAACACACGAAAAGGAAATAT 59.392 33.333 0.00 0.00 0.00 1.28
4030 4342 5.713792 TTTTGACAGAGTGAAAACAACCA 57.286 34.783 0.00 0.00 0.00 3.67
4064 4376 3.136626 GGGCTGATCCATACACTAAACCT 59.863 47.826 0.00 0.00 36.21 3.50
4065 4377 4.347000 GGGCTGATCCATACACTAAACCTA 59.653 45.833 0.00 0.00 36.21 3.08
4097 4409 2.288213 GGGTAAACACTTCTTTGGCAGC 60.288 50.000 0.00 0.00 0.00 5.25
4104 4416 1.919956 CTTCTTTGGCAGCTGGCTCG 61.920 60.000 36.39 24.63 44.01 5.03
4122 4434 3.312828 CTCGAGCTGGATTACATGCTAC 58.687 50.000 0.00 0.00 34.94 3.58
4156 4468 6.418101 ACATATGTGTGCTTTGTCCTCTTAT 58.582 36.000 7.78 0.00 37.14 1.73
4171 4483 7.492524 TGTCCTCTTATGTAAGCATCACTTAG 58.507 38.462 0.00 0.00 41.56 2.18
4287 4599 8.680820 TTCCCTTTTATCTTCTTCTCCTTCTA 57.319 34.615 0.00 0.00 0.00 2.10
4303 4615 1.789523 TCTATGACTAGGTGGGTGGC 58.210 55.000 0.00 0.00 0.00 5.01
4336 4648 1.405463 CGGTGAGGATTCGACTGATCA 59.595 52.381 0.00 0.00 0.00 2.92
4339 4651 3.118956 GGTGAGGATTCGACTGATCAAGT 60.119 47.826 0.00 0.00 43.85 3.16
4370 4683 8.268605 TGAACGGATGATATAGCTAGATAGACT 58.731 37.037 0.00 0.00 0.00 3.24
4431 4772 7.977818 AGGTACTAATGGCATGATAATCAAGA 58.022 34.615 0.00 0.00 36.02 3.02
4432 4773 7.880195 AGGTACTAATGGCATGATAATCAAGAC 59.120 37.037 0.00 0.00 36.02 3.01
4434 4775 6.604171 ACTAATGGCATGATAATCAAGACCA 58.396 36.000 0.00 0.00 30.46 4.02
4482 4823 6.072508 TGCTAAGTTAATCAAGAAAGTGGCAG 60.073 38.462 0.00 0.00 0.00 4.85
4486 4827 7.440523 AGTTAATCAAGAAAGTGGCAGTTAG 57.559 36.000 8.21 0.00 0.00 2.34
4489 4830 4.431416 TCAAGAAAGTGGCAGTTAGGAA 57.569 40.909 8.21 0.00 0.00 3.36
4513 4883 4.789807 AGCTAGATGTTGAGAATGGCAAT 58.210 39.130 0.00 0.00 0.00 3.56
4514 4884 5.198965 AGCTAGATGTTGAGAATGGCAATT 58.801 37.500 0.00 0.00 0.00 2.32
4515 4885 6.359804 AGCTAGATGTTGAGAATGGCAATTA 58.640 36.000 0.00 0.00 0.00 1.40
4516 4886 7.002879 AGCTAGATGTTGAGAATGGCAATTAT 58.997 34.615 0.00 0.00 0.00 1.28
4517 4887 7.040617 AGCTAGATGTTGAGAATGGCAATTATG 60.041 37.037 0.00 0.00 0.00 1.90
4535 4905 7.988737 CAATTATGCTAACCTTGATGTTGAGA 58.011 34.615 0.00 0.00 0.00 3.27
4536 4906 7.798596 ATTATGCTAACCTTGATGTTGAGAG 57.201 36.000 0.00 0.00 0.00 3.20
4537 4907 4.623932 TGCTAACCTTGATGTTGAGAGT 57.376 40.909 0.00 0.00 0.00 3.24
4538 4908 4.318332 TGCTAACCTTGATGTTGAGAGTG 58.682 43.478 0.00 0.00 0.00 3.51
4539 4909 3.686726 GCTAACCTTGATGTTGAGAGTGG 59.313 47.826 0.00 0.00 0.00 4.00
4540 4910 2.191128 ACCTTGATGTTGAGAGTGGC 57.809 50.000 0.00 0.00 0.00 5.01
4541 4911 1.421268 ACCTTGATGTTGAGAGTGGCA 59.579 47.619 0.00 0.00 0.00 4.92
4542 4912 2.158623 ACCTTGATGTTGAGAGTGGCAA 60.159 45.455 0.00 0.00 0.00 4.52
4557 4927 5.416952 AGAGTGGCAAGTATCCAATTTTCTG 59.583 40.000 0.00 0.00 35.01 3.02
4560 4930 4.158394 TGGCAAGTATCCAATTTTCTGAGC 59.842 41.667 0.00 0.00 0.00 4.26
4561 4931 4.346129 GCAAGTATCCAATTTTCTGAGCG 58.654 43.478 0.00 0.00 0.00 5.03
4562 4932 4.731773 GCAAGTATCCAATTTTCTGAGCGG 60.732 45.833 0.00 0.00 0.00 5.52
4563 4933 4.487714 AGTATCCAATTTTCTGAGCGGA 57.512 40.909 0.00 0.00 0.00 5.54
4564 4934 4.446371 AGTATCCAATTTTCTGAGCGGAG 58.554 43.478 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.250464 CGGAGTTGATTACAGCCTAAACA 58.750 43.478 0.00 0.00 0.00 2.83
1 2 4.092968 CACGGAGTTGATTACAGCCTAAAC 59.907 45.833 0.00 0.00 41.61 2.01
2 3 4.250464 CACGGAGTTGATTACAGCCTAAA 58.750 43.478 0.00 0.00 41.61 1.85
5 6 1.623811 ACACGGAGTTGATTACAGCCT 59.376 47.619 0.00 0.00 41.61 4.58
6 7 1.732259 CACACGGAGTTGATTACAGCC 59.268 52.381 0.00 0.00 41.61 4.85
7 8 1.732259 CCACACGGAGTTGATTACAGC 59.268 52.381 0.00 0.00 41.61 4.40
8 9 3.313012 TCCACACGGAGTTGATTACAG 57.687 47.619 0.00 0.00 41.61 2.74
9 10 3.556213 CCTTCCACACGGAGTTGATTACA 60.556 47.826 0.00 0.00 44.10 2.41
10 11 3.000727 CCTTCCACACGGAGTTGATTAC 58.999 50.000 0.00 0.00 44.10 1.89
12 13 1.420138 ACCTTCCACACGGAGTTGATT 59.580 47.619 0.00 0.00 44.10 2.57
13 14 1.056660 ACCTTCCACACGGAGTTGAT 58.943 50.000 0.00 0.00 44.10 2.57
14 15 0.105964 CACCTTCCACACGGAGTTGA 59.894 55.000 0.00 0.00 44.10 3.18
15 16 0.884704 CCACCTTCCACACGGAGTTG 60.885 60.000 0.00 0.00 44.10 3.16
16 17 1.450211 CCACCTTCCACACGGAGTT 59.550 57.895 0.00 0.00 44.10 3.01
17 18 2.516888 CCCACCTTCCACACGGAGT 61.517 63.158 0.00 0.00 44.10 3.85
18 19 1.764571 TTCCCACCTTCCACACGGAG 61.765 60.000 0.00 0.00 44.10 4.63
19 20 1.346479 TTTCCCACCTTCCACACGGA 61.346 55.000 0.00 0.00 40.60 4.69
20 21 1.149627 TTTCCCACCTTCCACACGG 59.850 57.895 0.00 0.00 0.00 4.94
21 22 0.464735 TGTTTCCCACCTTCCACACG 60.465 55.000 0.00 0.00 0.00 4.49
22 23 1.995376 ATGTTTCCCACCTTCCACAC 58.005 50.000 0.00 0.00 0.00 3.82
23 24 2.315176 CAATGTTTCCCACCTTCCACA 58.685 47.619 0.00 0.00 0.00 4.17
24 25 1.618343 CCAATGTTTCCCACCTTCCAC 59.382 52.381 0.00 0.00 0.00 4.02
64 65 0.727398 GGATTAGCTGTTGGACGCAC 59.273 55.000 0.00 0.00 0.00 5.34
67 68 1.860950 CGATGGATTAGCTGTTGGACG 59.139 52.381 0.00 0.00 0.00 4.79
153 154 7.115520 CGTAATTTCAGTCTAGTATGCTGGATG 59.884 40.741 0.00 1.07 34.72 3.51
164 165 6.806739 TCACACACATCGTAATTTCAGTCTAG 59.193 38.462 0.00 0.00 0.00 2.43
189 190 4.403734 ACGGGAATTGGTCAATTAACACT 58.596 39.130 8.69 0.00 40.77 3.55
210 211 6.571887 CGGAAGAAACAAACAAACAAACAAAC 59.428 34.615 0.00 0.00 0.00 2.93
211 212 6.292919 CCGGAAGAAACAAACAAACAAACAAA 60.293 34.615 0.00 0.00 0.00 2.83
212 213 5.177696 CCGGAAGAAACAAACAAACAAACAA 59.822 36.000 0.00 0.00 0.00 2.83
213 214 4.686554 CCGGAAGAAACAAACAAACAAACA 59.313 37.500 0.00 0.00 0.00 2.83
234 235 2.223386 ACAAACGACAATTGGTTCACCG 60.223 45.455 10.83 5.86 39.43 4.94
235 236 3.430333 ACAAACGACAATTGGTTCACC 57.570 42.857 10.83 0.00 32.02 4.02
237 238 7.313646 TCTTTTAACAAACGACAATTGGTTCA 58.686 30.769 10.83 0.00 32.02 3.18
247 403 7.238571 TGTGACTCTTTCTTTTAACAAACGAC 58.761 34.615 0.00 0.00 0.00 4.34
248 404 7.367159 TGTGACTCTTTCTTTTAACAAACGA 57.633 32.000 0.00 0.00 0.00 3.85
273 429 4.262420 CGATTCCCCCAACAAAGAAACATT 60.262 41.667 0.00 0.00 0.00 2.71
352 509 6.379133 ACATGGTAGACTTCGTCATTTACCTA 59.621 38.462 0.00 0.00 34.24 3.08
356 513 5.416083 CCACATGGTAGACTTCGTCATTTA 58.584 41.667 0.00 0.00 34.60 1.40
421 585 2.240279 AGAGCTCTGGACGTTAACTGT 58.760 47.619 17.42 3.49 0.00 3.55
454 618 6.877322 GCCAACACCTCTAGTTTTCTATGTAA 59.123 38.462 0.00 0.00 0.00 2.41
455 619 6.403878 GCCAACACCTCTAGTTTTCTATGTA 58.596 40.000 0.00 0.00 0.00 2.29
457 621 4.636206 GGCCAACACCTCTAGTTTTCTATG 59.364 45.833 0.00 0.00 0.00 2.23
459 623 3.908103 AGGCCAACACCTCTAGTTTTCTA 59.092 43.478 5.01 0.00 33.62 2.10
460 624 2.711547 AGGCCAACACCTCTAGTTTTCT 59.288 45.455 5.01 0.00 33.62 2.52
461 625 3.141767 AGGCCAACACCTCTAGTTTTC 57.858 47.619 5.01 0.00 33.62 2.29
503 667 2.901249 TGGAGCTTGCTTATTCCGTAC 58.099 47.619 0.00 0.00 32.27 3.67
509 673 6.840780 ATACAAGTTTGGAGCTTGCTTATT 57.159 33.333 4.72 0.00 45.09 1.40
510 674 6.350445 CCAATACAAGTTTGGAGCTTGCTTAT 60.350 38.462 4.72 0.00 45.35 1.73
511 675 5.048083 CCAATACAAGTTTGGAGCTTGCTTA 60.048 40.000 4.72 0.00 45.35 3.09
604 819 2.589798 AAGTCGGAAACACGAACTGA 57.410 45.000 0.00 0.00 45.38 3.41
618 833 2.460918 CGTCCAGGCTTACATAAGTCG 58.539 52.381 0.83 0.00 42.48 4.18
626 841 2.269172 GTTCTTAGCGTCCAGGCTTAC 58.731 52.381 0.00 0.00 41.39 2.34
637 853 4.375807 GCGATTCATCTCATGTTCTTAGCG 60.376 45.833 0.00 0.00 0.00 4.26
653 869 1.112916 TAGATGGCCTCGGCGATTCA 61.113 55.000 11.27 9.74 39.59 2.57
690 906 6.036470 GGGTGCAGAAGTTAATTTTGATAGC 58.964 40.000 0.00 0.00 0.00 2.97
711 927 0.623723 ACAGGTCACAACACAAGGGT 59.376 50.000 0.00 0.00 0.00 4.34
723 939 2.239400 CCTACTCACAGTCACAGGTCA 58.761 52.381 0.00 0.00 0.00 4.02
742 958 1.578206 GAACTCGGCCTTCAGCAACC 61.578 60.000 0.00 0.00 46.50 3.77
752 968 3.795638 GACCAATCGAACTCGGCC 58.204 61.111 0.00 0.00 40.29 6.13
789 1006 3.769300 TCTGCACAAACTAGGATCTGCTA 59.231 43.478 0.00 0.00 0.00 3.49
808 1025 9.988350 AACGAAACATTTTGCTATATAAGTCTG 57.012 29.630 0.00 0.00 0.00 3.51
827 1044 6.969828 ATCCAGAGATAACAGAAACGAAAC 57.030 37.500 0.00 0.00 0.00 2.78
846 1066 9.875708 AATAGGCATAAAATTAACTGGTATCCA 57.124 29.630 0.00 0.00 0.00 3.41
877 1098 9.762381 TGTTTAAATTTGGGGATTACTCTACAT 57.238 29.630 0.00 0.00 0.00 2.29
878 1099 9.589461 TTGTTTAAATTTGGGGATTACTCTACA 57.411 29.630 0.00 0.00 0.00 2.74
879 1100 9.850628 GTTGTTTAAATTTGGGGATTACTCTAC 57.149 33.333 0.00 0.00 0.00 2.59
901 1122 0.114954 AATGGAGGCCATGTGGTTGT 59.885 50.000 5.01 0.00 44.40 3.32
923 1144 7.806960 ACAAATGAAAAACAAAATGGTTGTGTG 59.193 29.630 0.00 0.00 32.22 3.82
924 1145 7.880105 ACAAATGAAAAACAAAATGGTTGTGT 58.120 26.923 0.00 0.00 32.22 3.72
925 1146 8.739649 AACAAATGAAAAACAAAATGGTTGTG 57.260 26.923 0.00 0.00 32.22 3.33
967 1197 7.255242 CGGCTGGAGAACAAATAAATATGACAT 60.255 37.037 0.00 0.00 0.00 3.06
1260 1493 4.216411 ACAGTAGGCCGTGATGTAATTT 57.784 40.909 9.50 0.00 0.00 1.82
1321 1554 0.030369 GGTCGACCTACATAGCCACG 59.970 60.000 27.64 0.00 0.00 4.94
1322 1555 1.400737 AGGTCGACCTACATAGCCAC 58.599 55.000 35.59 3.45 46.48 5.01
1434 1673 0.469917 CGACACCCAAGCCCTGATAT 59.530 55.000 0.00 0.00 0.00 1.63
1490 1729 0.680921 GCAGCCCATACCAGAGCAAA 60.681 55.000 0.00 0.00 0.00 3.68
1926 2181 2.655090 TCCAAGGTGCAGTTTGATGA 57.345 45.000 10.81 0.00 0.00 2.92
1951 2206 9.287373 TGCTTTTGATGATCATTAGTGCATATA 57.713 29.630 10.14 0.00 0.00 0.86
1952 2207 8.173542 TGCTTTTGATGATCATTAGTGCATAT 57.826 30.769 10.14 0.00 0.00 1.78
1953 2208 7.571080 TGCTTTTGATGATCATTAGTGCATA 57.429 32.000 10.14 0.00 0.00 3.14
1954 2209 6.459670 TGCTTTTGATGATCATTAGTGCAT 57.540 33.333 10.14 0.00 0.00 3.96
1955 2210 5.900865 TGCTTTTGATGATCATTAGTGCA 57.099 34.783 10.14 13.31 0.00 4.57
1956 2211 6.471519 GTCTTGCTTTTGATGATCATTAGTGC 59.528 38.462 10.14 11.10 0.00 4.40
1957 2212 6.971184 GGTCTTGCTTTTGATGATCATTAGTG 59.029 38.462 10.14 1.44 0.00 2.74
1958 2213 6.888632 AGGTCTTGCTTTTGATGATCATTAGT 59.111 34.615 10.14 0.00 0.00 2.24
1959 2214 7.282675 AGAGGTCTTGCTTTTGATGATCATTAG 59.717 37.037 10.14 6.67 0.00 1.73
1960 2215 7.114754 AGAGGTCTTGCTTTTGATGATCATTA 58.885 34.615 10.14 2.22 0.00 1.90
1961 2216 5.950549 AGAGGTCTTGCTTTTGATGATCATT 59.049 36.000 10.14 0.00 0.00 2.57
1962 2217 5.507637 AGAGGTCTTGCTTTTGATGATCAT 58.492 37.500 8.25 8.25 0.00 2.45
1963 2218 4.914983 AGAGGTCTTGCTTTTGATGATCA 58.085 39.130 0.00 0.00 0.00 2.92
1964 2219 5.877012 TGTAGAGGTCTTGCTTTTGATGATC 59.123 40.000 0.00 0.00 0.00 2.92
1965 2220 5.809001 TGTAGAGGTCTTGCTTTTGATGAT 58.191 37.500 0.00 0.00 0.00 2.45
1966 2221 5.227569 TGTAGAGGTCTTGCTTTTGATGA 57.772 39.130 0.00 0.00 0.00 2.92
1967 2222 6.506500 AATGTAGAGGTCTTGCTTTTGATG 57.493 37.500 0.00 0.00 0.00 3.07
1968 2223 7.398024 AGTAATGTAGAGGTCTTGCTTTTGAT 58.602 34.615 0.00 0.00 0.00 2.57
1969 2224 6.769512 AGTAATGTAGAGGTCTTGCTTTTGA 58.230 36.000 0.00 0.00 0.00 2.69
1970 2225 7.440523 AAGTAATGTAGAGGTCTTGCTTTTG 57.559 36.000 0.00 0.00 0.00 2.44
1971 2226 8.154856 TGTAAGTAATGTAGAGGTCTTGCTTTT 58.845 33.333 0.00 0.00 0.00 2.27
1972 2227 7.676947 TGTAAGTAATGTAGAGGTCTTGCTTT 58.323 34.615 0.00 0.00 0.00 3.51
1973 2228 7.241042 TGTAAGTAATGTAGAGGTCTTGCTT 57.759 36.000 0.00 0.00 0.00 3.91
1974 2229 6.852420 TGTAAGTAATGTAGAGGTCTTGCT 57.148 37.500 0.00 0.00 0.00 3.91
1975 2230 7.097834 ACTTGTAAGTAATGTAGAGGTCTTGC 58.902 38.462 0.00 0.00 37.52 4.01
1978 2233 9.305555 TGTAACTTGTAAGTAATGTAGAGGTCT 57.694 33.333 0.00 0.00 38.57 3.85
1979 2234 9.918630 TTGTAACTTGTAAGTAATGTAGAGGTC 57.081 33.333 0.00 0.00 38.57 3.85
1980 2235 9.702494 GTTGTAACTTGTAAGTAATGTAGAGGT 57.298 33.333 0.00 0.00 38.57 3.85
2040 2295 6.201425 TCTGCAGAAAATTAGCAAAGCAAAAG 59.799 34.615 15.67 0.00 37.89 2.27
2046 2301 8.746922 TTAACATCTGCAGAAAATTAGCAAAG 57.253 30.769 22.50 1.90 37.89 2.77
2114 2372 5.054477 CACCGGTATTCTCCAACGATATTT 58.946 41.667 6.87 0.00 0.00 1.40
2566 2873 1.393539 CTATTGAAGTTGTCGGTGGCG 59.606 52.381 0.00 0.00 0.00 5.69
2870 3180 6.550938 TTCATGAGCAATCCTTAAGAGAGA 57.449 37.500 3.36 0.00 0.00 3.10
2998 3308 0.398318 AGGCTCCAAAGTCTGACACC 59.602 55.000 10.88 0.07 35.67 4.16
3133 3443 8.375493 TCTCTAAAAGGATAACTCCAAAGCTA 57.625 34.615 0.00 0.00 44.79 3.32
3274 3584 2.480416 CGTGCTTTGTTGGCCTTTTACA 60.480 45.455 3.32 0.00 0.00 2.41
3294 3604 2.432628 GTCCCGTCAGCAACTCCG 60.433 66.667 0.00 0.00 0.00 4.63
3307 3617 1.605058 TAGCGAGGTCTGCAAGTCCC 61.605 60.000 0.00 0.00 43.64 4.46
3322 3632 5.928839 ACACATATCTAGGCATTTCTTAGCG 59.071 40.000 0.00 0.00 0.00 4.26
3439 3749 3.864789 AGAAGGTTTTCTGCTTCTGGA 57.135 42.857 0.00 0.00 42.04 3.86
3466 3776 9.310449 TCTATTTCATACCCACTAGTAGATTCC 57.690 37.037 3.59 0.00 0.00 3.01
3787 4099 3.466836 ACACACATCACATGTCGAAGTT 58.533 40.909 0.00 0.00 42.70 2.66
3788 4100 3.111853 ACACACATCACATGTCGAAGT 57.888 42.857 0.00 0.00 42.70 3.01
3883 4195 6.151817 AGAGGCATTTGAGTCAATAAAACTCC 59.848 38.462 6.36 2.19 42.03 3.85
3944 4256 1.061711 GTGCATTTTTGTTGTGCGCAA 59.938 42.857 14.00 9.01 45.80 4.85
4030 4342 2.300437 GGATCAGCCCGCTAGTATCTTT 59.700 50.000 0.00 0.00 0.00 2.52
4064 4376 1.976404 TGTTTACCCCACATGGACGTA 59.024 47.619 0.00 0.00 37.39 3.57
4065 4377 0.766131 TGTTTACCCCACATGGACGT 59.234 50.000 0.00 0.00 37.39 4.34
4097 4409 0.461548 TGTAATCCAGCTCGAGCCAG 59.538 55.000 32.94 24.72 43.38 4.85
4104 4416 8.307483 TCTTTATAGTAGCATGTAATCCAGCTC 58.693 37.037 0.00 0.00 38.47 4.09
4145 4457 6.299805 AGTGATGCTTACATAAGAGGACAA 57.700 37.500 2.75 0.00 36.35 3.18
4148 4460 7.780271 TCTCTAAGTGATGCTTACATAAGAGGA 59.220 37.037 2.75 0.00 36.35 3.71
4156 4468 3.769300 TGGCTCTCTAAGTGATGCTTACA 59.231 43.478 0.00 0.00 38.57 2.41
4171 4483 4.645588 ACTAGTAGGTACACATTGGCTCTC 59.354 45.833 1.45 0.00 0.00 3.20
4220 4532 7.977818 TGTCTAATATAAAGAGGCACATCCAT 58.022 34.615 0.00 0.00 37.29 3.41
4261 4573 7.990055 AGAAGGAGAAGAAGATAAAAGGGAAA 58.010 34.615 0.00 0.00 0.00 3.13
4287 4599 1.899437 CGTGCCACCCACCTAGTCAT 61.899 60.000 0.00 0.00 41.53 3.06
4303 4615 0.110688 CTCACCGAATTGCACACGTG 60.111 55.000 15.48 15.48 0.00 4.49
4316 4628 1.405463 TGATCAGTCGAATCCTCACCG 59.595 52.381 0.00 0.00 0.00 4.94
4336 4648 5.527582 GCTATATCATCCGTTCAACCAACTT 59.472 40.000 0.00 0.00 32.09 2.66
4339 4651 5.290493 AGCTATATCATCCGTTCAACCAA 57.710 39.130 0.00 0.00 0.00 3.67
4370 4683 8.299990 TGTTCTTTTCCTTTCTCCATTAACAA 57.700 30.769 0.00 0.00 0.00 2.83
4431 4772 1.073763 TGCTGCTAGGTTCATTGTGGT 59.926 47.619 0.00 0.00 0.00 4.16
4432 4773 1.825090 TGCTGCTAGGTTCATTGTGG 58.175 50.000 0.00 0.00 0.00 4.17
4434 4775 5.473066 AAAATTGCTGCTAGGTTCATTGT 57.527 34.783 0.00 0.00 0.00 2.71
4470 4811 4.038042 GCTTTTCCTAACTGCCACTTTCTT 59.962 41.667 0.00 0.00 0.00 2.52
4482 4823 7.907214 TTCTCAACATCTAGCTTTTCCTAAC 57.093 36.000 0.00 0.00 0.00 2.34
4486 4827 5.449725 GCCATTCTCAACATCTAGCTTTTCC 60.450 44.000 0.00 0.00 0.00 3.13
4489 4830 4.592942 TGCCATTCTCAACATCTAGCTTT 58.407 39.130 0.00 0.00 0.00 3.51
4513 4883 6.595326 CACTCTCAACATCAAGGTTAGCATAA 59.405 38.462 0.00 0.00 0.00 1.90
4514 4884 6.108687 CACTCTCAACATCAAGGTTAGCATA 58.891 40.000 0.00 0.00 0.00 3.14
4515 4885 4.940046 CACTCTCAACATCAAGGTTAGCAT 59.060 41.667 0.00 0.00 0.00 3.79
4516 4886 4.318332 CACTCTCAACATCAAGGTTAGCA 58.682 43.478 0.00 0.00 0.00 3.49
4517 4887 3.686726 CCACTCTCAACATCAAGGTTAGC 59.313 47.826 0.00 0.00 0.00 3.09
4518 4888 3.686726 GCCACTCTCAACATCAAGGTTAG 59.313 47.826 0.00 0.00 0.00 2.34
4519 4889 3.072330 TGCCACTCTCAACATCAAGGTTA 59.928 43.478 0.00 0.00 0.00 2.85
4520 4890 2.158623 TGCCACTCTCAACATCAAGGTT 60.159 45.455 0.00 0.00 0.00 3.50
4521 4891 1.421268 TGCCACTCTCAACATCAAGGT 59.579 47.619 0.00 0.00 0.00 3.50
4522 4892 2.189594 TGCCACTCTCAACATCAAGG 57.810 50.000 0.00 0.00 0.00 3.61
4523 4893 3.144506 ACTTGCCACTCTCAACATCAAG 58.855 45.455 0.00 0.00 36.48 3.02
4524 4894 3.213206 ACTTGCCACTCTCAACATCAA 57.787 42.857 0.00 0.00 0.00 2.57
4525 4895 2.936919 ACTTGCCACTCTCAACATCA 57.063 45.000 0.00 0.00 0.00 3.07
4526 4896 3.873952 GGATACTTGCCACTCTCAACATC 59.126 47.826 0.00 0.00 0.00 3.06
4527 4897 3.264193 TGGATACTTGCCACTCTCAACAT 59.736 43.478 0.00 0.00 37.61 2.71
4528 4898 2.637382 TGGATACTTGCCACTCTCAACA 59.363 45.455 0.00 0.00 37.61 3.33
4529 4899 3.334583 TGGATACTTGCCACTCTCAAC 57.665 47.619 0.00 0.00 37.61 3.18
4530 4900 4.574674 ATTGGATACTTGCCACTCTCAA 57.425 40.909 0.00 0.00 34.56 3.02
4531 4901 4.574674 AATTGGATACTTGCCACTCTCA 57.425 40.909 0.00 0.00 34.56 3.27
4532 4902 5.649831 AGAAAATTGGATACTTGCCACTCTC 59.350 40.000 0.00 0.00 34.56 3.20
4533 4903 5.416952 CAGAAAATTGGATACTTGCCACTCT 59.583 40.000 0.00 0.00 34.56 3.24
4534 4904 5.415701 TCAGAAAATTGGATACTTGCCACTC 59.584 40.000 0.00 0.00 34.56 3.51
4535 4905 5.324409 TCAGAAAATTGGATACTTGCCACT 58.676 37.500 0.00 0.00 34.56 4.00
4536 4906 5.643379 TCAGAAAATTGGATACTTGCCAC 57.357 39.130 0.00 0.00 34.56 5.01
4537 4907 4.158394 GCTCAGAAAATTGGATACTTGCCA 59.842 41.667 0.00 0.00 37.61 4.92
4538 4908 4.676546 GCTCAGAAAATTGGATACTTGCC 58.323 43.478 0.00 0.00 37.61 4.52
4539 4909 4.346129 CGCTCAGAAAATTGGATACTTGC 58.654 43.478 0.00 0.00 37.61 4.01
4540 4910 4.635765 TCCGCTCAGAAAATTGGATACTTG 59.364 41.667 0.00 0.00 37.61 3.16
4541 4911 4.843728 TCCGCTCAGAAAATTGGATACTT 58.156 39.130 0.00 0.00 37.61 2.24
4542 4912 4.446371 CTCCGCTCAGAAAATTGGATACT 58.554 43.478 0.00 0.00 37.61 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.