Multiple sequence alignment - TraesCS2B01G398500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G398500 chr2B 100.000 3043 0 0 1 3043 566010846 566007804 0.000000e+00 5620.0
1 TraesCS2B01G398500 chr2B 95.911 269 11 0 3 271 725125023 725125291 1.300000e-118 436.0
2 TraesCS2B01G398500 chr2A 96.617 1478 35 5 771 2244 624703119 624701653 0.000000e+00 2438.0
3 TraesCS2B01G398500 chr2A 86.418 670 72 7 2377 3043 624701505 624700852 0.000000e+00 715.0
4 TraesCS2B01G398500 chr2D 95.955 1508 33 10 757 2244 482175531 482174032 0.000000e+00 2422.0
5 TraesCS2B01G398500 chr2D 89.238 669 70 2 2377 3043 482172790 482172122 0.000000e+00 835.0
6 TraesCS2B01G398500 chr2D 84.429 289 28 8 1 287 50038764 50039037 5.000000e-68 268.0
7 TraesCS2B01G398500 chr2D 81.285 358 44 12 1 353 480562091 480562430 5.000000e-68 268.0
8 TraesCS2B01G398500 chr2D 75.936 374 59 15 1 359 567388841 567389198 2.430000e-36 163.0
9 TraesCS2B01G398500 chr2D 100.000 31 0 0 2255 2285 482172904 482172874 1.180000e-04 58.4
10 TraesCS2B01G398500 chr3D 88.621 914 95 4 1027 1940 586127454 586126550 0.000000e+00 1103.0
11 TraesCS2B01G398500 chr3B 87.245 933 106 9 1027 1953 782748001 782747076 0.000000e+00 1051.0
12 TraesCS2B01G398500 chr1B 90.220 501 35 3 1 500 90271301 90270814 2.560000e-180 641.0
13 TraesCS2B01G398500 chr5B 87.052 502 48 5 1 500 572073554 572074040 4.430000e-153 551.0
14 TraesCS2B01G398500 chr6B 85.429 501 59 5 1 500 661027278 661026791 2.710000e-140 508.0
15 TraesCS2B01G398500 chr7A 87.042 355 41 5 149 500 5260816 5261168 2.200000e-106 396.0
16 TraesCS2B01G398500 chr7A 86.761 355 42 5 149 500 5244230 5244582 1.020000e-104 390.0
17 TraesCS2B01G398500 chr7A 86.761 355 42 5 149 500 5248015 5248367 1.020000e-104 390.0
18 TraesCS2B01G398500 chr7A 86.761 355 42 5 149 500 5274597 5274949 1.020000e-104 390.0
19 TraesCS2B01G398500 chr7A 76.718 524 80 21 1 500 161704183 161704688 1.400000e-63 254.0
20 TraesCS2B01G398500 chr7A 82.392 301 33 8 1 298 5294531 5294248 8.430000e-61 244.0
21 TraesCS2B01G398500 chrUn 86.761 355 42 5 149 500 461778869 461778517 1.020000e-104 390.0
22 TraesCS2B01G398500 chrUn 85.677 384 38 15 98 472 5449266 5448891 3.680000e-104 388.0
23 TraesCS2B01G398500 chr7D 83.412 422 47 14 1 417 529430399 529430802 1.330000e-98 370.0
24 TraesCS2B01G398500 chr1D 82.119 453 53 15 1 446 482330084 482329653 2.230000e-96 363.0
25 TraesCS2B01G398500 chr4B 87.805 287 22 1 1 287 411477651 411477924 1.050000e-84 324.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G398500 chr2B 566007804 566010846 3042 True 5620.000000 5620 100.000000 1 3043 1 chr2B.!!$R1 3042
1 TraesCS2B01G398500 chr2A 624700852 624703119 2267 True 1576.500000 2438 91.517500 771 3043 2 chr2A.!!$R1 2272
2 TraesCS2B01G398500 chr2D 482172122 482175531 3409 True 1105.133333 2422 95.064333 757 3043 3 chr2D.!!$R1 2286
3 TraesCS2B01G398500 chr3D 586126550 586127454 904 True 1103.000000 1103 88.621000 1027 1940 1 chr3D.!!$R1 913
4 TraesCS2B01G398500 chr3B 782747076 782748001 925 True 1051.000000 1051 87.245000 1027 1953 1 chr3B.!!$R1 926
5 TraesCS2B01G398500 chr7A 5244230 5248367 4137 False 390.000000 390 86.761000 149 500 2 chr7A.!!$F4 351
6 TraesCS2B01G398500 chr7A 161704183 161704688 505 False 254.000000 254 76.718000 1 500 1 chr7A.!!$F3 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
709 728 0.108138 CGACCATTCCACTCCCTGAC 60.108 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2469 7447 0.328258 AGGGACGCCTTATGTTTGCT 59.672 50.0 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.392461 TGATTCCCGGGCGAAAGAAG 60.392 55.000 18.49 0.00 0.00 2.85
72 73 3.427425 CCGCGCGTGGGAATCAAA 61.427 61.111 30.86 0.00 0.00 2.69
73 74 2.760159 CCGCGCGTGGGAATCAAAT 61.760 57.895 30.86 0.00 0.00 2.32
74 75 1.297598 CGCGCGTGGGAATCAAATC 60.298 57.895 24.19 0.00 0.00 2.17
75 76 1.705337 CGCGCGTGGGAATCAAATCT 61.705 55.000 24.19 0.00 0.00 2.40
76 77 0.248215 GCGCGTGGGAATCAAATCTG 60.248 55.000 8.43 0.00 0.00 2.90
77 78 0.378257 CGCGTGGGAATCAAATCTGG 59.622 55.000 0.00 0.00 0.00 3.86
78 79 0.740737 GCGTGGGAATCAAATCTGGG 59.259 55.000 0.00 0.00 0.00 4.45
79 80 1.681780 GCGTGGGAATCAAATCTGGGA 60.682 52.381 0.00 0.00 0.00 4.37
80 81 2.722094 CGTGGGAATCAAATCTGGGAA 58.278 47.619 0.00 0.00 0.00 3.97
81 82 3.290710 CGTGGGAATCAAATCTGGGAAT 58.709 45.455 0.00 0.00 0.00 3.01
82 83 3.316308 CGTGGGAATCAAATCTGGGAATC 59.684 47.826 0.00 0.00 0.00 2.52
83 84 4.280819 GTGGGAATCAAATCTGGGAATCA 58.719 43.478 0.00 0.00 0.00 2.57
103 104 3.106407 GCCGTCAGTGTCGCTGTC 61.106 66.667 13.00 6.91 45.23 3.51
109 110 2.658593 AGTGTCGCTGTCGCACAC 60.659 61.111 15.01 14.18 41.61 3.82
116 117 2.740714 GCTGTCGCACACGGGAATC 61.741 63.158 0.00 0.00 40.63 2.52
128 129 2.125512 GGAATCAGCGCCGTCTGT 60.126 61.111 2.29 0.00 35.63 3.41
129 130 2.456119 GGAATCAGCGCCGTCTGTG 61.456 63.158 2.29 0.00 35.63 3.66
130 131 1.738099 GAATCAGCGCCGTCTGTGT 60.738 57.895 2.29 0.00 35.63 3.72
131 132 1.687494 GAATCAGCGCCGTCTGTGTC 61.687 60.000 2.29 0.00 35.63 3.67
136 137 4.003788 CGCCGTCTGTGTCCCCTT 62.004 66.667 0.00 0.00 0.00 3.95
137 138 2.358737 GCCGTCTGTGTCCCCTTG 60.359 66.667 0.00 0.00 0.00 3.61
138 139 3.148084 CCGTCTGTGTCCCCTTGT 58.852 61.111 0.00 0.00 0.00 3.16
139 140 1.004918 CCGTCTGTGTCCCCTTGTC 60.005 63.158 0.00 0.00 0.00 3.18
140 141 1.004918 CGTCTGTGTCCCCTTGTCC 60.005 63.158 0.00 0.00 0.00 4.02
142 143 2.358737 CTGTGTCCCCTTGTCCGC 60.359 66.667 0.00 0.00 0.00 5.54
143 144 2.847234 TGTGTCCCCTTGTCCGCT 60.847 61.111 0.00 0.00 0.00 5.52
146 147 0.252197 GTGTCCCCTTGTCCGCTATT 59.748 55.000 0.00 0.00 0.00 1.73
147 148 0.251916 TGTCCCCTTGTCCGCTATTG 59.748 55.000 0.00 0.00 0.00 1.90
154 173 2.096496 CCTTGTCCGCTATTGCAAAGAG 59.904 50.000 1.71 5.21 38.42 2.85
197 216 4.293648 CCCGCAGTCACGTCACCA 62.294 66.667 0.00 0.00 0.00 4.17
198 217 3.036084 CCGCAGTCACGTCACCAC 61.036 66.667 0.00 0.00 0.00 4.16
199 218 2.027605 CGCAGTCACGTCACCACT 59.972 61.111 0.00 0.00 0.00 4.00
200 219 2.302952 CGCAGTCACGTCACCACTG 61.303 63.158 8.46 8.46 40.53 3.66
201 220 3.630204 CAGTCACGTCACCACTGC 58.370 61.111 0.00 0.00 31.62 4.40
202 221 1.227234 CAGTCACGTCACCACTGCA 60.227 57.895 0.00 0.00 31.62 4.41
203 222 1.068083 AGTCACGTCACCACTGCAG 59.932 57.895 13.48 13.48 0.00 4.41
204 223 2.280119 TCACGTCACCACTGCAGC 60.280 61.111 15.27 0.00 0.00 5.25
205 224 2.588596 CACGTCACCACTGCAGCA 60.589 61.111 15.27 0.00 0.00 4.41
206 225 2.588877 ACGTCACCACTGCAGCAC 60.589 61.111 15.27 1.96 0.00 4.40
207 226 3.705638 CGTCACCACTGCAGCACG 61.706 66.667 15.27 10.71 0.00 5.34
208 227 3.349006 GTCACCACTGCAGCACGG 61.349 66.667 15.27 14.65 0.00 4.94
214 233 4.996434 ACTGCAGCACGGCCTGTC 62.996 66.667 15.27 0.00 35.28 3.51
242 261 3.114616 CGACAGCCGCAACAGAGG 61.115 66.667 0.00 0.00 0.00 3.69
264 283 4.415150 CTCACTGGGTGGCGGCAT 62.415 66.667 17.19 0.00 33.87 4.40
265 284 4.720902 TCACTGGGTGGCGGCATG 62.721 66.667 17.19 9.30 33.87 4.06
301 320 3.838795 GTTACGTCGCGGCTGCTG 61.839 66.667 17.03 9.49 39.65 4.41
312 331 2.512286 GCTGCTGCGCTGTGGATA 60.512 61.111 16.05 0.00 0.00 2.59
313 332 2.108514 GCTGCTGCGCTGTGGATAA 61.109 57.895 16.05 0.00 0.00 1.75
314 333 1.717937 CTGCTGCGCTGTGGATAAC 59.282 57.895 16.05 0.00 0.00 1.89
315 334 1.709147 CTGCTGCGCTGTGGATAACC 61.709 60.000 16.05 0.00 0.00 2.85
316 335 2.472909 GCTGCGCTGTGGATAACCC 61.473 63.158 16.05 0.00 34.81 4.11
317 336 2.125310 TGCGCTGTGGATAACCCG 60.125 61.111 9.73 0.00 37.93 5.28
318 337 2.125269 GCGCTGTGGATAACCCGT 60.125 61.111 0.00 0.00 37.93 5.28
319 338 1.743995 GCGCTGTGGATAACCCGTT 60.744 57.895 0.00 0.00 37.93 4.44
320 339 0.460635 GCGCTGTGGATAACCCGTTA 60.461 55.000 0.00 0.00 37.93 3.18
321 340 1.283736 CGCTGTGGATAACCCGTTAC 58.716 55.000 0.00 0.00 37.93 2.50
322 341 1.404449 CGCTGTGGATAACCCGTTACA 60.404 52.381 0.00 0.00 37.93 2.41
323 342 2.702261 GCTGTGGATAACCCGTTACAA 58.298 47.619 0.00 0.00 37.93 2.41
324 343 2.417586 GCTGTGGATAACCCGTTACAAC 59.582 50.000 0.00 0.00 37.93 3.32
334 353 2.474712 GTTACAACGAGCGCTGCC 59.525 61.111 18.48 0.00 0.00 4.85
335 354 3.109547 TTACAACGAGCGCTGCCG 61.110 61.111 18.48 16.97 37.57 5.69
396 415 3.649986 GCAGGTGCCACGTGTCAC 61.650 66.667 20.89 20.89 36.45 3.67
399 418 2.972505 GGTGCCACGTGTCACCTG 60.973 66.667 35.00 11.83 46.90 4.00
400 419 3.649986 GTGCCACGTGTCACCTGC 61.650 66.667 18.57 11.59 0.00 4.85
401 420 4.927782 TGCCACGTGTCACCTGCC 62.928 66.667 15.65 0.00 0.00 4.85
421 440 4.082523 GCCTGCCGCCACTAGTGA 62.083 66.667 24.68 2.59 0.00 3.41
422 441 2.185350 CCTGCCGCCACTAGTGAG 59.815 66.667 24.68 16.46 0.00 3.51
423 442 2.510238 CTGCCGCCACTAGTGAGC 60.510 66.667 24.68 22.03 0.00 4.26
424 443 4.435436 TGCCGCCACTAGTGAGCG 62.435 66.667 33.39 33.39 44.16 5.03
427 446 2.808315 CGCCACTAGTGAGCGGAT 59.192 61.111 33.03 0.00 42.36 4.18
428 447 1.299468 CGCCACTAGTGAGCGGATC 60.299 63.158 33.03 12.84 42.36 3.36
429 448 1.068250 GCCACTAGTGAGCGGATCC 59.932 63.158 24.68 0.00 0.00 3.36
430 449 1.395826 GCCACTAGTGAGCGGATCCT 61.396 60.000 24.68 0.00 0.00 3.24
431 450 1.115467 CCACTAGTGAGCGGATCCTT 58.885 55.000 24.68 0.00 0.00 3.36
432 451 1.482593 CCACTAGTGAGCGGATCCTTT 59.517 52.381 24.68 0.00 0.00 3.11
433 452 2.093447 CCACTAGTGAGCGGATCCTTTT 60.093 50.000 24.68 0.00 0.00 2.27
434 453 3.600388 CACTAGTGAGCGGATCCTTTTT 58.400 45.455 18.45 0.00 0.00 1.94
435 454 3.372206 CACTAGTGAGCGGATCCTTTTTG 59.628 47.826 18.45 0.00 0.00 2.44
436 455 2.859165 AGTGAGCGGATCCTTTTTGA 57.141 45.000 10.75 0.00 0.00 2.69
437 456 2.427506 AGTGAGCGGATCCTTTTTGAC 58.572 47.619 10.75 0.00 0.00 3.18
438 457 2.151202 GTGAGCGGATCCTTTTTGACA 58.849 47.619 10.75 0.00 0.00 3.58
439 458 2.552315 GTGAGCGGATCCTTTTTGACAA 59.448 45.455 10.75 0.00 0.00 3.18
440 459 3.191371 GTGAGCGGATCCTTTTTGACAAT 59.809 43.478 10.75 0.00 0.00 2.71
441 460 3.191162 TGAGCGGATCCTTTTTGACAATG 59.809 43.478 10.75 0.00 0.00 2.82
442 461 3.157087 AGCGGATCCTTTTTGACAATGT 58.843 40.909 10.75 0.00 0.00 2.71
443 462 3.573967 AGCGGATCCTTTTTGACAATGTT 59.426 39.130 10.75 0.00 0.00 2.71
444 463 4.039124 AGCGGATCCTTTTTGACAATGTTT 59.961 37.500 10.75 0.00 0.00 2.83
445 464 4.749598 GCGGATCCTTTTTGACAATGTTTT 59.250 37.500 10.75 0.00 0.00 2.43
446 465 5.236263 GCGGATCCTTTTTGACAATGTTTTT 59.764 36.000 10.75 0.00 0.00 1.94
447 466 6.648502 CGGATCCTTTTTGACAATGTTTTTG 58.351 36.000 10.75 0.00 0.00 2.44
448 467 6.478344 CGGATCCTTTTTGACAATGTTTTTGA 59.522 34.615 10.75 0.00 0.00 2.69
449 468 7.516627 CGGATCCTTTTTGACAATGTTTTTGAC 60.517 37.037 10.75 0.00 0.00 3.18
450 469 7.279758 GGATCCTTTTTGACAATGTTTTTGACA 59.720 33.333 3.84 0.00 43.71 3.58
484 503 7.870509 TTTGACAATTCTATTGATCAGGAGG 57.129 36.000 6.42 0.00 0.00 4.30
485 504 6.566079 TGACAATTCTATTGATCAGGAGGT 57.434 37.500 6.42 0.00 0.00 3.85
486 505 6.586344 TGACAATTCTATTGATCAGGAGGTC 58.414 40.000 6.42 6.35 0.00 3.85
487 506 5.934781 ACAATTCTATTGATCAGGAGGTCC 58.065 41.667 6.42 0.00 0.00 4.46
489 508 6.159398 ACAATTCTATTGATCAGGAGGTCCTT 59.841 38.462 6.42 0.00 46.09 3.36
490 509 6.838401 ATTCTATTGATCAGGAGGTCCTTT 57.162 37.500 0.00 0.00 46.09 3.11
491 510 6.642733 TTCTATTGATCAGGAGGTCCTTTT 57.357 37.500 0.00 0.00 46.09 2.27
492 511 5.994250 TCTATTGATCAGGAGGTCCTTTTG 58.006 41.667 0.00 0.00 46.09 2.44
493 512 3.439857 TTGATCAGGAGGTCCTTTTGG 57.560 47.619 0.00 0.00 46.09 3.28
494 513 2.631384 TGATCAGGAGGTCCTTTTGGA 58.369 47.619 0.00 0.00 46.09 3.53
506 525 1.443828 TTTTGGACAAAAGGCGCCC 59.556 52.632 26.15 6.12 35.57 6.13
507 526 2.034048 TTTTGGACAAAAGGCGCCCC 62.034 55.000 26.15 17.01 35.57 5.80
508 527 2.937959 TTTGGACAAAAGGCGCCCCT 62.938 55.000 26.15 8.08 45.77 4.79
509 528 2.070399 TTGGACAAAAGGCGCCCCTA 62.070 55.000 26.15 10.22 41.90 3.53
510 529 2.044555 GGACAAAAGGCGCCCCTAC 61.045 63.158 26.15 10.11 41.90 3.18
511 530 2.035155 ACAAAAGGCGCCCCTACC 59.965 61.111 26.15 0.00 41.90 3.18
512 531 2.754254 CAAAAGGCGCCCCTACCC 60.754 66.667 26.15 0.00 41.90 3.69
513 532 4.056584 AAAAGGCGCCCCTACCCC 62.057 66.667 26.15 0.00 41.90 4.95
521 540 4.489771 CCCCTACCCCGCAGCAAG 62.490 72.222 0.00 0.00 0.00 4.01
522 541 4.489771 CCCTACCCCGCAGCAAGG 62.490 72.222 0.00 0.00 0.00 3.61
561 580 4.758251 CGCCAGCGTCCATCACCA 62.758 66.667 3.35 0.00 34.35 4.17
562 581 3.127533 GCCAGCGTCCATCACCAC 61.128 66.667 0.00 0.00 0.00 4.16
563 582 2.436646 CCAGCGTCCATCACCACC 60.437 66.667 0.00 0.00 0.00 4.61
564 583 2.347114 CAGCGTCCATCACCACCA 59.653 61.111 0.00 0.00 0.00 4.17
565 584 2.034879 CAGCGTCCATCACCACCAC 61.035 63.158 0.00 0.00 0.00 4.16
566 585 2.746277 GCGTCCATCACCACCACC 60.746 66.667 0.00 0.00 0.00 4.61
567 586 2.434185 CGTCCATCACCACCACCG 60.434 66.667 0.00 0.00 0.00 4.94
568 587 2.046314 GTCCATCACCACCACCGG 60.046 66.667 0.00 0.00 0.00 5.28
569 588 4.028490 TCCATCACCACCACCGGC 62.028 66.667 0.00 0.00 0.00 6.13
570 589 4.343323 CCATCACCACCACCGGCA 62.343 66.667 0.00 0.00 0.00 5.69
571 590 3.055719 CATCACCACCACCGGCAC 61.056 66.667 0.00 0.00 0.00 5.01
572 591 3.249189 ATCACCACCACCGGCACT 61.249 61.111 0.00 0.00 0.00 4.40
573 592 2.829384 ATCACCACCACCGGCACTT 61.829 57.895 0.00 0.00 0.00 3.16
574 593 2.351924 ATCACCACCACCGGCACTTT 62.352 55.000 0.00 0.00 0.00 2.66
575 594 2.518349 ACCACCACCGGCACTTTG 60.518 61.111 0.00 0.00 0.00 2.77
576 595 3.294493 CCACCACCGGCACTTTGG 61.294 66.667 0.00 3.34 34.51 3.28
577 596 2.203280 CACCACCGGCACTTTGGA 60.203 61.111 14.59 0.00 32.88 3.53
578 597 1.603455 CACCACCGGCACTTTGGAT 60.603 57.895 14.59 0.00 32.88 3.41
579 598 1.603455 ACCACCGGCACTTTGGATG 60.603 57.895 14.59 0.00 32.88 3.51
580 599 2.568090 CACCGGCACTTTGGATGC 59.432 61.111 0.00 0.00 42.62 3.91
581 600 3.055719 ACCGGCACTTTGGATGCG 61.056 61.111 0.00 0.00 44.37 4.73
582 601 3.814268 CCGGCACTTTGGATGCGG 61.814 66.667 0.00 0.00 44.37 5.69
583 602 3.814268 CGGCACTTTGGATGCGGG 61.814 66.667 0.00 0.00 44.37 6.13
584 603 2.676471 GGCACTTTGGATGCGGGT 60.676 61.111 0.00 0.00 44.37 5.28
585 604 2.568090 GCACTTTGGATGCGGGTG 59.432 61.111 0.00 0.00 32.45 4.61
586 605 2.993471 GCACTTTGGATGCGGGTGG 61.993 63.158 6.27 0.00 32.45 4.61
587 606 2.676471 ACTTTGGATGCGGGTGGC 60.676 61.111 0.00 0.00 43.96 5.01
606 625 4.720902 CCATGCTCCACCGTGCCA 62.721 66.667 0.00 0.00 0.00 4.92
607 626 3.434319 CATGCTCCACCGTGCCAC 61.434 66.667 0.00 0.00 0.00 5.01
608 627 4.722700 ATGCTCCACCGTGCCACC 62.723 66.667 0.00 0.00 0.00 4.61
611 630 4.394712 CTCCACCGTGCCACCTCC 62.395 72.222 0.00 0.00 0.00 4.30
627 646 4.864334 CCACCCGCTCCCTGCATC 62.864 72.222 0.00 0.00 43.06 3.91
628 647 4.864334 CACCCGCTCCCTGCATCC 62.864 72.222 0.00 0.00 43.06 3.51
634 653 4.598894 CTCCCTGCATCCGCCGAG 62.599 72.222 0.00 0.00 37.32 4.63
646 665 4.162690 GCCGAGTGCCGAGGGATT 62.163 66.667 0.00 0.00 41.76 3.01
647 666 2.107141 CCGAGTGCCGAGGGATTC 59.893 66.667 0.00 0.00 41.76 2.52
648 667 2.427245 CCGAGTGCCGAGGGATTCT 61.427 63.158 4.82 0.00 41.76 2.40
649 668 1.066587 CGAGTGCCGAGGGATTCTC 59.933 63.158 4.82 0.00 41.76 2.87
650 669 1.443828 GAGTGCCGAGGGATTCTCC 59.556 63.158 0.00 0.00 39.30 3.71
651 670 1.002274 AGTGCCGAGGGATTCTCCT 59.998 57.895 0.00 0.00 39.30 3.69
657 676 1.068921 GAGGGATTCTCCTCGCTGC 59.931 63.158 5.71 0.00 43.19 5.25
658 677 1.680522 GAGGGATTCTCCTCGCTGCA 61.681 60.000 0.00 0.00 43.19 4.41
659 678 1.053264 AGGGATTCTCCTCGCTGCAT 61.053 55.000 0.00 0.00 37.09 3.96
660 679 0.179034 GGGATTCTCCTCGCTGCATT 60.179 55.000 0.00 0.00 36.57 3.56
661 680 1.224965 GGATTCTCCTCGCTGCATTC 58.775 55.000 0.00 0.00 32.53 2.67
662 681 1.224965 GATTCTCCTCGCTGCATTCC 58.775 55.000 0.00 0.00 0.00 3.01
663 682 0.179034 ATTCTCCTCGCTGCATTCCC 60.179 55.000 0.00 0.00 0.00 3.97
664 683 2.203126 CTCCTCGCTGCATTCCCC 60.203 66.667 0.00 0.00 0.00 4.81
665 684 3.008517 TCCTCGCTGCATTCCCCA 61.009 61.111 0.00 0.00 0.00 4.96
666 685 2.194056 CCTCGCTGCATTCCCCAT 59.806 61.111 0.00 0.00 0.00 4.00
667 686 1.895707 CCTCGCTGCATTCCCCATC 60.896 63.158 0.00 0.00 0.00 3.51
668 687 2.203056 TCGCTGCATTCCCCATCG 60.203 61.111 0.00 0.00 0.00 3.84
669 688 2.203056 CGCTGCATTCCCCATCGA 60.203 61.111 0.00 0.00 0.00 3.59
670 689 2.249535 CGCTGCATTCCCCATCGAG 61.250 63.158 0.00 0.00 0.00 4.04
671 690 2.550101 GCTGCATTCCCCATCGAGC 61.550 63.158 0.00 0.00 0.00 5.03
672 691 1.895707 CTGCATTCCCCATCGAGCC 60.896 63.158 0.00 0.00 0.00 4.70
673 692 2.974698 GCATTCCCCATCGAGCCG 60.975 66.667 0.00 0.00 0.00 5.52
674 693 2.974698 CATTCCCCATCGAGCCGC 60.975 66.667 0.00 0.00 0.00 6.53
675 694 4.256180 ATTCCCCATCGAGCCGCC 62.256 66.667 0.00 0.00 0.00 6.13
697 716 3.470888 CTCCTCCCCGCGACCATT 61.471 66.667 8.23 0.00 0.00 3.16
698 717 3.447025 CTCCTCCCCGCGACCATTC 62.447 68.421 8.23 0.00 0.00 2.67
699 718 4.547367 CCTCCCCGCGACCATTCC 62.547 72.222 8.23 0.00 0.00 3.01
700 719 3.781307 CTCCCCGCGACCATTCCA 61.781 66.667 8.23 0.00 0.00 3.53
701 720 4.090588 TCCCCGCGACCATTCCAC 62.091 66.667 8.23 0.00 0.00 4.02
702 721 4.096003 CCCCGCGACCATTCCACT 62.096 66.667 8.23 0.00 0.00 4.00
703 722 2.511600 CCCGCGACCATTCCACTC 60.512 66.667 8.23 0.00 0.00 3.51
704 723 2.511600 CCGCGACCATTCCACTCC 60.512 66.667 8.23 0.00 0.00 3.85
705 724 2.511600 CGCGACCATTCCACTCCC 60.512 66.667 0.00 0.00 0.00 4.30
706 725 2.990479 GCGACCATTCCACTCCCT 59.010 61.111 0.00 0.00 0.00 4.20
707 726 1.450312 GCGACCATTCCACTCCCTG 60.450 63.158 0.00 0.00 0.00 4.45
708 727 1.899437 GCGACCATTCCACTCCCTGA 61.899 60.000 0.00 0.00 0.00 3.86
709 728 0.108138 CGACCATTCCACTCCCTGAC 60.108 60.000 0.00 0.00 0.00 3.51
710 729 0.984230 GACCATTCCACTCCCTGACA 59.016 55.000 0.00 0.00 0.00 3.58
711 730 0.693049 ACCATTCCACTCCCTGACAC 59.307 55.000 0.00 0.00 0.00 3.67
712 731 0.391661 CCATTCCACTCCCTGACACG 60.392 60.000 0.00 0.00 0.00 4.49
713 732 0.608130 CATTCCACTCCCTGACACGA 59.392 55.000 0.00 0.00 0.00 4.35
714 733 0.608640 ATTCCACTCCCTGACACGAC 59.391 55.000 0.00 0.00 0.00 4.34
715 734 0.469331 TTCCACTCCCTGACACGACT 60.469 55.000 0.00 0.00 0.00 4.18
716 735 0.894184 TCCACTCCCTGACACGACTC 60.894 60.000 0.00 0.00 0.00 3.36
717 736 1.587054 CACTCCCTGACACGACTCC 59.413 63.158 0.00 0.00 0.00 3.85
718 737 0.896019 CACTCCCTGACACGACTCCT 60.896 60.000 0.00 0.00 0.00 3.69
719 738 0.609681 ACTCCCTGACACGACTCCTC 60.610 60.000 0.00 0.00 0.00 3.71
720 739 1.304217 TCCCTGACACGACTCCTCC 60.304 63.158 0.00 0.00 0.00 4.30
721 740 2.352032 CCCTGACACGACTCCTCCC 61.352 68.421 0.00 0.00 0.00 4.30
722 741 2.352032 CCTGACACGACTCCTCCCC 61.352 68.421 0.00 0.00 0.00 4.81
723 742 1.606601 CTGACACGACTCCTCCCCA 60.607 63.158 0.00 0.00 0.00 4.96
724 743 1.878656 CTGACACGACTCCTCCCCAC 61.879 65.000 0.00 0.00 0.00 4.61
725 744 2.603776 ACACGACTCCTCCCCACC 60.604 66.667 0.00 0.00 0.00 4.61
726 745 3.760035 CACGACTCCTCCCCACCG 61.760 72.222 0.00 0.00 0.00 4.94
729 748 3.083997 GACTCCTCCCCACCGCAT 61.084 66.667 0.00 0.00 0.00 4.73
730 749 3.391665 GACTCCTCCCCACCGCATG 62.392 68.421 0.00 0.00 0.00 4.06
731 750 4.864334 CTCCTCCCCACCGCATGC 62.864 72.222 7.91 7.91 0.00 4.06
744 763 4.864334 CATGCGCTCCTCCCCACC 62.864 72.222 9.73 0.00 0.00 4.61
764 783 4.570663 GCGCGCTCCTCCGTACAT 62.571 66.667 26.67 0.00 0.00 2.29
765 784 3.028130 CGCGCTCCTCCGTACATA 58.972 61.111 5.56 0.00 0.00 2.29
766 785 1.370172 CGCGCTCCTCCGTACATAC 60.370 63.158 5.56 0.00 0.00 2.39
767 786 1.007618 GCGCTCCTCCGTACATACC 60.008 63.158 0.00 0.00 0.00 2.73
768 787 1.731433 GCGCTCCTCCGTACATACCA 61.731 60.000 0.00 0.00 0.00 3.25
769 788 0.311165 CGCTCCTCCGTACATACCAG 59.689 60.000 0.00 0.00 0.00 4.00
829 864 8.651389 CATCAATGTAGGTAGAGATTCCCTAAA 58.349 37.037 0.00 0.00 32.81 1.85
830 865 8.019656 TCAATGTAGGTAGAGATTCCCTAAAC 57.980 38.462 0.00 0.00 32.81 2.01
835 874 8.294690 TGTAGGTAGAGATTCCCTAAACCTAAT 58.705 37.037 0.00 0.00 40.86 1.73
868 907 3.569049 AAGTCGTTGCCTCGTCGGG 62.569 63.158 0.00 0.00 0.00 5.14
1001 1040 1.210204 ATCCCCACCTCACACAGCAT 61.210 55.000 0.00 0.00 0.00 3.79
1456 5289 4.457496 CGCGCCCATCTGGTCAGT 62.457 66.667 0.00 0.00 36.04 3.41
1492 5325 2.125912 CACGCCGACCTCCTCTTG 60.126 66.667 0.00 0.00 0.00 3.02
1789 5625 1.482593 CGCAGGGTGGAGAAGAAGTAT 59.517 52.381 0.00 0.00 0.00 2.12
1855 5691 0.822164 GGCTCTGGCATTTCAGCATT 59.178 50.000 9.29 0.00 40.87 3.56
2173 6014 4.522789 GGTCATGTTAGTGGTTGTTTGGAT 59.477 41.667 0.00 0.00 0.00 3.41
2186 6027 6.064717 GGTTGTTTGGATAGCTAATGAGGAT 58.935 40.000 0.00 0.00 0.00 3.24
2187 6028 6.547510 GGTTGTTTGGATAGCTAATGAGGATT 59.452 38.462 0.00 0.00 0.00 3.01
2188 6029 7.068716 GGTTGTTTGGATAGCTAATGAGGATTT 59.931 37.037 0.00 0.00 0.00 2.17
2224 6065 5.607477 TGAGTTGATTTTTAGACAGACCGT 58.393 37.500 0.00 0.00 0.00 4.83
2285 7246 9.945904 TTATGGAAATTATGTTTGGGGTTAAAC 57.054 29.630 0.00 0.00 40.18 2.01
2286 7247 6.770542 TGGAAATTATGTTTGGGGTTAAACC 58.229 36.000 0.00 0.00 39.27 3.27
2301 7279 4.101898 GGTTAAACCCCAGTTCCATGTTTT 59.898 41.667 0.00 0.00 34.19 2.43
2342 7320 6.884096 GCATGATGCTATCTCACACTATAC 57.116 41.667 10.72 0.00 40.96 1.47
2343 7321 6.629128 GCATGATGCTATCTCACACTATACT 58.371 40.000 10.72 0.00 40.96 2.12
2344 7322 7.095910 GCATGATGCTATCTCACACTATACTT 58.904 38.462 10.72 0.00 40.96 2.24
2345 7323 7.601886 GCATGATGCTATCTCACACTATACTTT 59.398 37.037 10.72 0.00 40.96 2.66
2346 7324 9.486497 CATGATGCTATCTCACACTATACTTTT 57.514 33.333 0.00 0.00 0.00 2.27
2370 7348 6.681729 TTTTTGAGGGTACTATCTCACACT 57.318 37.500 11.57 0.00 39.43 3.55
2371 7349 7.786046 TTTTTGAGGGTACTATCTCACACTA 57.214 36.000 11.57 0.00 39.43 2.74
2372 7350 7.973048 TTTTGAGGGTACTATCTCACACTAT 57.027 36.000 11.57 0.00 39.43 2.12
2373 7351 9.483489 TTTTTGAGGGTACTATCTCACACTATA 57.517 33.333 11.57 0.00 39.43 1.31
2374 7352 8.461249 TTTGAGGGTACTATCTCACACTATAC 57.539 38.462 11.57 0.00 39.43 1.47
2375 7353 7.390013 TGAGGGTACTATCTCACACTATACT 57.610 40.000 9.05 0.00 35.37 2.12
2376 7354 7.225011 TGAGGGTACTATCTCACACTATACTG 58.775 42.308 9.05 0.00 35.37 2.74
2377 7355 7.072076 TGAGGGTACTATCTCACACTATACTGA 59.928 40.741 9.05 0.00 35.37 3.41
2378 7356 7.225725 AGGGTACTATCTCACACTATACTGAC 58.774 42.308 0.00 0.00 0.00 3.51
2379 7357 6.996879 GGGTACTATCTCACACTATACTGACA 59.003 42.308 0.00 0.00 0.00 3.58
2419 7397 0.618458 ATTCGGCCAACTCCTGCTAA 59.382 50.000 2.24 0.00 0.00 3.09
2422 7400 1.685820 GGCCAACTCCTGCTAAGGT 59.314 57.895 0.00 0.00 44.82 3.50
2425 7403 0.036732 CCAACTCCTGCTAAGGTGCA 59.963 55.000 0.00 0.00 44.82 4.57
2437 7415 1.166531 AAGGTGCACTGTTCTTCGGC 61.167 55.000 17.98 0.00 0.00 5.54
2442 7420 0.884704 GCACTGTTCTTCGGCTCCAA 60.885 55.000 0.00 0.00 0.00 3.53
2457 7435 3.334751 CAACTTCGCACCGCACGA 61.335 61.111 0.00 0.00 37.86 4.35
2469 7447 0.945099 CCGCACGAGCACTAGATCTA 59.055 55.000 5.50 1.69 42.27 1.98
2471 7449 1.661743 CGCACGAGCACTAGATCTAGC 60.662 57.143 26.50 16.26 42.27 3.42
2482 7460 5.178438 GCACTAGATCTAGCAAACATAAGGC 59.822 44.000 26.50 12.17 36.66 4.35
2486 7464 2.901249 TCTAGCAAACATAAGGCGTCC 58.099 47.619 0.00 0.00 0.00 4.79
2492 7470 1.568504 AACATAAGGCGTCCCTCTGA 58.431 50.000 0.00 0.00 41.90 3.27
2504 7482 3.929610 CGTCCCTCTGAATCAAGTTCTTC 59.070 47.826 0.00 0.00 37.72 2.87
2507 7485 2.675348 CCTCTGAATCAAGTTCTTCGCC 59.325 50.000 0.00 0.00 37.72 5.54
2513 7491 1.600636 CAAGTTCTTCGCCTGGCCA 60.601 57.895 14.12 4.71 0.00 5.36
2522 7500 3.056328 GCCTGGCCAACGAACCTC 61.056 66.667 7.01 0.00 0.00 3.85
2526 7504 2.741211 GGCCAACGAACCTCGACC 60.741 66.667 0.00 0.00 43.74 4.79
2528 7506 2.646719 CCAACGAACCTCGACCGA 59.353 61.111 2.59 0.00 43.74 4.69
2548 7526 0.888619 TGCTGGACTTCGACGAGATT 59.111 50.000 0.00 0.00 0.00 2.40
2581 7559 2.004808 CTGCCTCACGCCGACTCATA 62.005 60.000 0.00 0.00 36.24 2.15
2589 7568 1.141019 GCCGACTCATACGCCTTCA 59.859 57.895 0.00 0.00 0.00 3.02
2598 7577 1.956629 ATACGCCTTCACGACCAGGG 61.957 60.000 0.00 0.00 36.70 4.45
2646 7625 2.182030 GTGCCCCTTCTCTCGACG 59.818 66.667 0.00 0.00 0.00 5.12
2697 7676 2.338620 CGTTCCTGCACTGACCGA 59.661 61.111 0.00 0.00 0.00 4.69
2701 7680 0.033504 TTCCTGCACTGACCGAAGAC 59.966 55.000 0.00 0.00 0.00 3.01
2728 7707 4.679331 ACTTTCTACTCTACTGGGCTTCT 58.321 43.478 0.00 0.00 0.00 2.85
2729 7708 4.464597 ACTTTCTACTCTACTGGGCTTCTG 59.535 45.833 0.00 0.00 0.00 3.02
2737 7716 4.417437 TCTACTGGGCTTCTGTTACTTCT 58.583 43.478 0.00 0.00 0.00 2.85
2746 7725 4.501198 GCTTCTGTTACTTCTACATCGCTC 59.499 45.833 0.00 0.00 0.00 5.03
2769 7748 1.839424 GGCCATCAAAAGTGCCTAGT 58.161 50.000 0.00 0.00 40.77 2.57
2821 7800 0.242017 GGTGCTTCCAGAACATGTGC 59.758 55.000 0.00 0.00 35.97 4.57
2822 7801 1.242076 GTGCTTCCAGAACATGTGCT 58.758 50.000 0.00 0.00 0.00 4.40
2839 7818 2.716828 CTCGTTCGACAATGCGCGT 61.717 57.895 8.43 0.00 0.00 6.01
2842 7821 3.474904 TTCGACAATGCGCGTCCG 61.475 61.111 8.43 7.63 37.57 4.79
2897 7876 2.665000 CGAAGGCTTGGGCTCTCA 59.335 61.111 3.46 0.00 37.50 3.27
2911 7890 3.941188 CTCACAGGTGCCCACGGT 61.941 66.667 0.00 0.00 0.00 4.83
2916 7895 1.228003 CAGGTGCCCACGGTTTACA 60.228 57.895 0.00 0.00 0.00 2.41
2944 7924 0.607762 TTAGTGCCATCCTTGCGCAA 60.608 50.000 23.48 23.48 41.59 4.85
2975 7955 3.676093 ACACATGTCTCTACTCTCACGA 58.324 45.455 0.00 0.00 0.00 4.35
2976 7956 3.437395 ACACATGTCTCTACTCTCACGAC 59.563 47.826 0.00 0.00 0.00 4.34
2989 7969 3.945921 CTCTCACGACCTAGGTTATGTCA 59.054 47.826 17.53 0.87 0.00 3.58
2993 7973 4.042398 CACGACCTAGGTTATGTCATTCG 58.958 47.826 17.53 13.70 0.00 3.34
2995 7975 3.490249 CGACCTAGGTTATGTCATTCGCA 60.490 47.826 17.53 0.00 0.00 5.10
2998 7978 3.069586 CCTAGGTTATGTCATTCGCAGGA 59.930 47.826 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.732308 GCTGATGCCCTGCTTTAGC 59.268 57.895 3.61 3.61 37.90 3.09
59 60 0.740737 CCCAGATTTGATTCCCACGC 59.259 55.000 0.00 0.00 0.00 5.34
71 72 1.153168 CGGCGGTGATTCCCAGATT 60.153 57.895 0.00 0.00 0.00 2.40
72 73 2.311688 GACGGCGGTGATTCCCAGAT 62.312 60.000 13.24 0.00 0.00 2.90
73 74 3.000819 ACGGCGGTGATTCCCAGA 61.001 61.111 13.24 0.00 0.00 3.86
74 75 2.511600 GACGGCGGTGATTCCCAG 60.512 66.667 13.24 0.00 0.00 4.45
75 76 3.309436 CTGACGGCGGTGATTCCCA 62.309 63.158 13.24 0.00 0.00 4.37
76 77 2.511600 CTGACGGCGGTGATTCCC 60.512 66.667 13.24 0.00 0.00 3.97
77 78 2.264794 ACTGACGGCGGTGATTCC 59.735 61.111 13.24 0.00 30.79 3.01
103 104 3.853330 CGCTGATTCCCGTGTGCG 61.853 66.667 0.00 0.00 37.57 5.34
109 110 4.514577 AGACGGCGCTGATTCCCG 62.515 66.667 25.98 11.16 46.97 5.14
123 124 1.004918 CGGACAAGGGGACACAGAC 60.005 63.158 0.00 0.00 0.00 3.51
128 129 0.251916 CAATAGCGGACAAGGGGACA 59.748 55.000 0.00 0.00 0.00 4.02
129 130 1.095807 GCAATAGCGGACAAGGGGAC 61.096 60.000 0.00 0.00 0.00 4.46
130 131 1.223487 GCAATAGCGGACAAGGGGA 59.777 57.895 0.00 0.00 0.00 4.81
131 132 0.679640 TTGCAATAGCGGACAAGGGG 60.680 55.000 0.00 0.00 46.23 4.79
133 134 2.083774 TCTTTGCAATAGCGGACAAGG 58.916 47.619 0.00 0.00 46.23 3.61
134 135 2.096496 CCTCTTTGCAATAGCGGACAAG 59.904 50.000 0.00 0.00 46.23 3.16
135 136 2.083774 CCTCTTTGCAATAGCGGACAA 58.916 47.619 0.00 0.00 46.23 3.18
136 137 1.737838 CCTCTTTGCAATAGCGGACA 58.262 50.000 0.00 0.00 46.23 4.02
137 138 0.378610 GCCTCTTTGCAATAGCGGAC 59.621 55.000 16.77 8.17 46.23 4.79
138 139 0.748005 GGCCTCTTTGCAATAGCGGA 60.748 55.000 16.77 4.83 46.23 5.54
139 140 1.729881 GGCCTCTTTGCAATAGCGG 59.270 57.895 0.00 6.63 46.23 5.52
140 141 1.353103 CGGCCTCTTTGCAATAGCG 59.647 57.895 0.00 0.00 46.23 4.26
142 143 0.749454 AGGCGGCCTCTTTGCAATAG 60.749 55.000 17.69 0.70 0.00 1.73
143 144 0.748005 GAGGCGGCCTCTTTGCAATA 60.748 55.000 35.90 0.00 46.41 1.90
183 202 3.630204 CAGTGGTGACGTGACTGC 58.370 61.111 4.85 0.00 31.31 4.40
184 203 1.217585 CTGCAGTGGTGACGTGACTG 61.218 60.000 5.25 7.12 40.14 3.51
185 204 1.068083 CTGCAGTGGTGACGTGACT 59.932 57.895 5.25 0.00 0.00 3.41
186 205 2.598632 GCTGCAGTGGTGACGTGAC 61.599 63.158 16.64 0.00 0.00 3.67
187 206 2.280119 GCTGCAGTGGTGACGTGA 60.280 61.111 16.64 0.00 0.00 4.35
188 207 2.588596 TGCTGCAGTGGTGACGTG 60.589 61.111 16.64 0.00 0.00 4.49
189 208 2.588877 GTGCTGCAGTGGTGACGT 60.589 61.111 16.64 0.00 0.00 4.34
190 209 3.705638 CGTGCTGCAGTGGTGACG 61.706 66.667 16.64 11.95 0.00 4.35
191 210 3.349006 CCGTGCTGCAGTGGTGAC 61.349 66.667 16.64 3.97 0.00 3.67
197 216 4.996434 GACAGGCCGTGCTGCAGT 62.996 66.667 16.64 0.00 0.00 4.40
225 244 3.114616 CCTCTGTTGCGGCTGTCG 61.115 66.667 0.00 0.00 42.76 4.35
226 245 3.426568 GCCTCTGTTGCGGCTGTC 61.427 66.667 0.00 0.00 40.68 3.51
247 266 4.415150 ATGCCGCCACCCAGTGAG 62.415 66.667 0.00 0.00 35.23 3.51
248 267 4.720902 CATGCCGCCACCCAGTGA 62.721 66.667 0.00 0.00 35.23 3.41
284 303 3.838795 CAGCAGCCGCGACGTAAC 61.839 66.667 8.23 0.00 45.49 2.50
298 317 2.472909 GGGTTATCCACAGCGCAGC 61.473 63.158 11.47 0.00 46.08 5.25
299 318 2.173669 CGGGTTATCCACAGCGCAG 61.174 63.158 11.47 3.33 34.36 5.18
300 319 2.125310 CGGGTTATCCACAGCGCA 60.125 61.111 11.47 0.00 34.36 6.09
301 320 0.460635 TAACGGGTTATCCACAGCGC 60.461 55.000 0.00 0.00 34.36 5.92
302 321 1.283736 GTAACGGGTTATCCACAGCG 58.716 55.000 0.00 0.00 34.36 5.18
303 322 2.389962 TGTAACGGGTTATCCACAGC 57.610 50.000 0.00 0.00 34.36 4.40
317 336 2.474712 GGCAGCGCTCGTTGTAAC 59.525 61.111 7.13 0.00 0.00 2.50
318 337 3.109547 CGGCAGCGCTCGTTGTAA 61.110 61.111 7.13 0.00 0.00 2.41
404 423 4.082523 TCACTAGTGGCGGCAGGC 62.083 66.667 22.48 2.73 44.11 4.85
405 424 2.185350 CTCACTAGTGGCGGCAGG 59.815 66.667 22.48 8.51 0.00 4.85
406 425 2.510238 GCTCACTAGTGGCGGCAG 60.510 66.667 22.48 12.90 0.00 4.85
407 426 4.435436 CGCTCACTAGTGGCGGCA 62.435 66.667 33.03 7.97 42.36 5.69
413 432 2.969628 AAAGGATCCGCTCACTAGTG 57.030 50.000 17.17 17.17 0.00 2.74
414 433 3.260884 TCAAAAAGGATCCGCTCACTAGT 59.739 43.478 5.98 0.00 0.00 2.57
415 434 3.619038 GTCAAAAAGGATCCGCTCACTAG 59.381 47.826 5.98 0.00 0.00 2.57
416 435 3.007506 TGTCAAAAAGGATCCGCTCACTA 59.992 43.478 5.98 0.00 0.00 2.74
417 436 2.224523 TGTCAAAAAGGATCCGCTCACT 60.225 45.455 5.98 0.00 0.00 3.41
418 437 2.151202 TGTCAAAAAGGATCCGCTCAC 58.849 47.619 5.98 0.54 0.00 3.51
419 438 2.559698 TGTCAAAAAGGATCCGCTCA 57.440 45.000 5.98 0.00 0.00 4.26
420 439 3.191371 ACATTGTCAAAAAGGATCCGCTC 59.809 43.478 5.98 0.00 0.00 5.03
421 440 3.157087 ACATTGTCAAAAAGGATCCGCT 58.843 40.909 5.98 0.00 0.00 5.52
422 441 3.575965 ACATTGTCAAAAAGGATCCGC 57.424 42.857 5.98 0.00 0.00 5.54
423 442 6.478344 TCAAAAACATTGTCAAAAAGGATCCG 59.522 34.615 5.98 0.00 0.00 4.18
424 443 7.279758 TGTCAAAAACATTGTCAAAAAGGATCC 59.720 33.333 2.48 2.48 31.20 3.36
425 444 8.195617 TGTCAAAAACATTGTCAAAAAGGATC 57.804 30.769 0.00 0.00 31.20 3.36
426 445 8.614346 CATGTCAAAAACATTGTCAAAAAGGAT 58.386 29.630 0.00 0.00 46.73 3.24
427 446 7.605691 ACATGTCAAAAACATTGTCAAAAAGGA 59.394 29.630 0.00 0.00 46.73 3.36
428 447 7.693120 CACATGTCAAAAACATTGTCAAAAAGG 59.307 33.333 0.00 0.00 46.73 3.11
429 448 8.441608 TCACATGTCAAAAACATTGTCAAAAAG 58.558 29.630 0.00 0.00 46.73 2.27
430 449 8.315391 TCACATGTCAAAAACATTGTCAAAAA 57.685 26.923 0.00 0.00 46.73 1.94
431 450 7.895975 TCACATGTCAAAAACATTGTCAAAA 57.104 28.000 0.00 0.00 46.73 2.44
432 451 8.489990 AATCACATGTCAAAAACATTGTCAAA 57.510 26.923 0.00 0.00 46.73 2.69
433 452 8.489990 AAATCACATGTCAAAAACATTGTCAA 57.510 26.923 0.00 0.00 46.73 3.18
434 453 8.489990 AAAATCACATGTCAAAAACATTGTCA 57.510 26.923 0.00 0.00 46.73 3.58
458 477 8.742777 CCTCCTGATCAATAGAATTGTCAAAAA 58.257 33.333 0.00 0.00 0.00 1.94
459 478 7.890127 ACCTCCTGATCAATAGAATTGTCAAAA 59.110 33.333 0.00 0.00 0.00 2.44
460 479 7.405292 ACCTCCTGATCAATAGAATTGTCAAA 58.595 34.615 0.00 0.00 0.00 2.69
461 480 6.962182 ACCTCCTGATCAATAGAATTGTCAA 58.038 36.000 0.00 0.00 0.00 3.18
462 481 6.408548 GGACCTCCTGATCAATAGAATTGTCA 60.409 42.308 0.00 3.27 0.00 3.58
463 482 5.994668 GGACCTCCTGATCAATAGAATTGTC 59.005 44.000 0.00 0.67 0.00 3.18
464 483 5.669447 AGGACCTCCTGATCAATAGAATTGT 59.331 40.000 0.00 0.00 46.55 2.71
465 484 6.185114 AGGACCTCCTGATCAATAGAATTG 57.815 41.667 0.00 0.00 46.55 2.32
488 507 1.443828 GGGCGCCTTTTGTCCAAAA 59.556 52.632 28.56 5.20 37.90 2.44
489 508 2.503382 GGGGCGCCTTTTGTCCAAA 61.503 57.895 28.56 0.00 0.00 3.28
490 509 2.070399 TAGGGGCGCCTTTTGTCCAA 62.070 55.000 29.14 3.79 0.00 3.53
491 510 2.530672 TAGGGGCGCCTTTTGTCCA 61.531 57.895 29.14 4.64 0.00 4.02
492 511 2.044555 GTAGGGGCGCCTTTTGTCC 61.045 63.158 29.14 18.04 0.00 4.02
493 512 2.044555 GGTAGGGGCGCCTTTTGTC 61.045 63.158 29.14 8.16 0.00 3.18
494 513 2.035155 GGTAGGGGCGCCTTTTGT 59.965 61.111 29.14 5.59 0.00 2.83
495 514 2.754254 GGGTAGGGGCGCCTTTTG 60.754 66.667 29.14 0.00 0.00 2.44
496 515 4.056584 GGGGTAGGGGCGCCTTTT 62.057 66.667 29.14 14.56 38.31 2.27
504 523 4.489771 CTTGCTGCGGGGTAGGGG 62.490 72.222 0.00 0.00 0.00 4.79
505 524 4.489771 CCTTGCTGCGGGGTAGGG 62.490 72.222 0.00 0.00 0.00 3.53
506 525 4.489771 CCCTTGCTGCGGGGTAGG 62.490 72.222 18.51 9.17 38.08 3.18
544 563 4.758251 TGGTGATGGACGCTGGCG 62.758 66.667 13.56 13.56 46.03 5.69
545 564 3.127533 GTGGTGATGGACGCTGGC 61.128 66.667 0.00 0.00 0.00 4.85
546 565 2.436646 GGTGGTGATGGACGCTGG 60.437 66.667 0.00 0.00 0.00 4.85
547 566 2.034879 GTGGTGGTGATGGACGCTG 61.035 63.158 0.00 0.00 0.00 5.18
548 567 2.347490 GTGGTGGTGATGGACGCT 59.653 61.111 0.00 0.00 0.00 5.07
549 568 2.746277 GGTGGTGGTGATGGACGC 60.746 66.667 0.00 0.00 0.00 5.19
550 569 2.434185 CGGTGGTGGTGATGGACG 60.434 66.667 0.00 0.00 0.00 4.79
551 570 2.046314 CCGGTGGTGGTGATGGAC 60.046 66.667 0.00 0.00 0.00 4.02
552 571 4.028490 GCCGGTGGTGGTGATGGA 62.028 66.667 1.90 0.00 0.00 3.41
553 572 4.343323 TGCCGGTGGTGGTGATGG 62.343 66.667 1.90 0.00 0.00 3.51
554 573 3.055719 GTGCCGGTGGTGGTGATG 61.056 66.667 1.90 0.00 0.00 3.07
555 574 2.351924 AAAGTGCCGGTGGTGGTGAT 62.352 55.000 1.90 0.00 0.00 3.06
556 575 3.050354 AAAGTGCCGGTGGTGGTGA 62.050 57.895 1.90 0.00 0.00 4.02
557 576 2.518349 AAAGTGCCGGTGGTGGTG 60.518 61.111 1.90 0.00 0.00 4.17
558 577 2.518349 CAAAGTGCCGGTGGTGGT 60.518 61.111 1.90 0.00 0.00 4.16
559 578 3.294493 CCAAAGTGCCGGTGGTGG 61.294 66.667 1.90 0.00 0.00 4.61
560 579 1.603455 ATCCAAAGTGCCGGTGGTG 60.603 57.895 1.90 0.00 33.88 4.17
561 580 1.603455 CATCCAAAGTGCCGGTGGT 60.603 57.895 1.90 0.00 33.88 4.16
562 581 2.993471 GCATCCAAAGTGCCGGTGG 61.993 63.158 1.90 1.70 36.61 4.61
563 582 2.568090 GCATCCAAAGTGCCGGTG 59.432 61.111 1.90 0.00 36.61 4.94
564 583 3.055719 CGCATCCAAAGTGCCGGT 61.056 61.111 1.90 0.00 39.39 5.28
565 584 3.814268 CCGCATCCAAAGTGCCGG 61.814 66.667 0.00 0.00 39.39 6.13
566 585 3.814268 CCCGCATCCAAAGTGCCG 61.814 66.667 0.00 0.00 39.39 5.69
567 586 2.676471 ACCCGCATCCAAAGTGCC 60.676 61.111 0.00 0.00 39.39 5.01
568 587 2.568090 CACCCGCATCCAAAGTGC 59.432 61.111 0.00 0.00 39.18 4.40
569 588 2.993471 GCCACCCGCATCCAAAGTG 61.993 63.158 0.00 0.00 37.47 3.16
570 589 2.676471 GCCACCCGCATCCAAAGT 60.676 61.111 0.00 0.00 37.47 2.66
571 590 3.814268 CGCCACCCGCATCCAAAG 61.814 66.667 0.00 0.00 37.30 2.77
589 608 4.720902 TGGCACGGTGGAGCATGG 62.721 66.667 10.60 0.00 0.00 3.66
590 609 3.434319 GTGGCACGGTGGAGCATG 61.434 66.667 10.60 0.00 0.00 4.06
591 610 4.722700 GGTGGCACGGTGGAGCAT 62.723 66.667 12.17 0.00 0.00 3.79
594 613 4.394712 GGAGGTGGCACGGTGGAG 62.395 72.222 12.17 0.00 0.00 3.86
617 636 4.598894 CTCGGCGGATGCAGGGAG 62.599 72.222 7.21 0.00 39.36 4.30
629 648 4.162690 AATCCCTCGGCACTCGGC 62.163 66.667 0.00 0.00 43.74 5.54
630 649 2.107141 GAATCCCTCGGCACTCGG 59.893 66.667 0.00 0.00 39.77 4.63
631 650 1.066587 GAGAATCCCTCGGCACTCG 59.933 63.158 0.00 0.00 40.90 4.18
643 662 1.224965 GGAATGCAGCGAGGAGAATC 58.775 55.000 0.00 0.00 0.00 2.52
644 663 0.179034 GGGAATGCAGCGAGGAGAAT 60.179 55.000 0.00 0.00 0.00 2.40
645 664 1.221840 GGGAATGCAGCGAGGAGAA 59.778 57.895 0.00 0.00 0.00 2.87
646 665 2.735772 GGGGAATGCAGCGAGGAGA 61.736 63.158 0.00 0.00 0.00 3.71
647 666 2.203126 GGGGAATGCAGCGAGGAG 60.203 66.667 0.00 0.00 0.00 3.69
648 667 2.329539 GATGGGGAATGCAGCGAGGA 62.330 60.000 0.00 0.00 0.00 3.71
649 668 1.895707 GATGGGGAATGCAGCGAGG 60.896 63.158 0.00 0.00 0.00 4.63
650 669 2.249535 CGATGGGGAATGCAGCGAG 61.250 63.158 0.00 0.00 0.00 5.03
651 670 2.203056 CGATGGGGAATGCAGCGA 60.203 61.111 0.00 0.00 0.00 4.93
652 671 2.203056 TCGATGGGGAATGCAGCG 60.203 61.111 0.00 0.00 0.00 5.18
653 672 2.550101 GCTCGATGGGGAATGCAGC 61.550 63.158 0.00 0.00 0.00 5.25
654 673 1.895707 GGCTCGATGGGGAATGCAG 60.896 63.158 0.00 0.00 0.00 4.41
655 674 2.192979 GGCTCGATGGGGAATGCA 59.807 61.111 0.00 0.00 0.00 3.96
656 675 2.974698 CGGCTCGATGGGGAATGC 60.975 66.667 0.00 0.00 0.00 3.56
657 676 2.974698 GCGGCTCGATGGGGAATG 60.975 66.667 0.00 0.00 0.00 2.67
658 677 4.256180 GGCGGCTCGATGGGGAAT 62.256 66.667 0.00 0.00 0.00 3.01
680 699 3.447025 GAATGGTCGCGGGGAGGAG 62.447 68.421 6.13 0.00 0.00 3.69
681 700 3.467226 GAATGGTCGCGGGGAGGA 61.467 66.667 6.13 0.00 0.00 3.71
682 701 4.547367 GGAATGGTCGCGGGGAGG 62.547 72.222 6.13 0.00 0.00 4.30
683 702 3.781307 TGGAATGGTCGCGGGGAG 61.781 66.667 6.13 0.00 0.00 4.30
684 703 4.090588 GTGGAATGGTCGCGGGGA 62.091 66.667 6.13 0.00 0.00 4.81
685 704 4.096003 AGTGGAATGGTCGCGGGG 62.096 66.667 6.13 0.00 0.00 5.73
686 705 2.511600 GAGTGGAATGGTCGCGGG 60.512 66.667 6.13 0.00 0.00 6.13
687 706 2.511600 GGAGTGGAATGGTCGCGG 60.512 66.667 6.13 0.00 0.00 6.46
688 707 2.511600 GGGAGTGGAATGGTCGCG 60.512 66.667 0.00 0.00 0.00 5.87
689 708 1.450312 CAGGGAGTGGAATGGTCGC 60.450 63.158 0.00 0.00 0.00 5.19
690 709 0.108138 GTCAGGGAGTGGAATGGTCG 60.108 60.000 0.00 0.00 0.00 4.79
691 710 0.984230 TGTCAGGGAGTGGAATGGTC 59.016 55.000 0.00 0.00 0.00 4.02
692 711 0.693049 GTGTCAGGGAGTGGAATGGT 59.307 55.000 0.00 0.00 0.00 3.55
693 712 0.391661 CGTGTCAGGGAGTGGAATGG 60.392 60.000 0.00 0.00 0.00 3.16
694 713 0.608130 TCGTGTCAGGGAGTGGAATG 59.392 55.000 0.00 0.00 0.00 2.67
695 714 0.608640 GTCGTGTCAGGGAGTGGAAT 59.391 55.000 0.00 0.00 0.00 3.01
696 715 0.469331 AGTCGTGTCAGGGAGTGGAA 60.469 55.000 0.00 0.00 0.00 3.53
697 716 0.894184 GAGTCGTGTCAGGGAGTGGA 60.894 60.000 0.00 0.00 0.00 4.02
698 717 1.587054 GAGTCGTGTCAGGGAGTGG 59.413 63.158 0.00 0.00 0.00 4.00
699 718 0.896019 AGGAGTCGTGTCAGGGAGTG 60.896 60.000 0.00 0.00 0.00 3.51
700 719 0.609681 GAGGAGTCGTGTCAGGGAGT 60.610 60.000 0.00 0.00 0.00 3.85
701 720 1.316706 GGAGGAGTCGTGTCAGGGAG 61.317 65.000 0.00 0.00 0.00 4.30
702 721 1.304217 GGAGGAGTCGTGTCAGGGA 60.304 63.158 0.00 0.00 0.00 4.20
703 722 2.352032 GGGAGGAGTCGTGTCAGGG 61.352 68.421 0.00 0.00 0.00 4.45
704 723 2.352032 GGGGAGGAGTCGTGTCAGG 61.352 68.421 0.00 0.00 0.00 3.86
705 724 1.606601 TGGGGAGGAGTCGTGTCAG 60.607 63.158 0.00 0.00 0.00 3.51
706 725 1.906824 GTGGGGAGGAGTCGTGTCA 60.907 63.158 0.00 0.00 0.00 3.58
707 726 2.647158 GGTGGGGAGGAGTCGTGTC 61.647 68.421 0.00 0.00 0.00 3.67
708 727 2.603776 GGTGGGGAGGAGTCGTGT 60.604 66.667 0.00 0.00 0.00 4.49
709 728 3.760035 CGGTGGGGAGGAGTCGTG 61.760 72.222 0.00 0.00 0.00 4.35
712 731 3.083997 ATGCGGTGGGGAGGAGTC 61.084 66.667 0.00 0.00 0.00 3.36
713 732 3.402681 CATGCGGTGGGGAGGAGT 61.403 66.667 0.00 0.00 0.00 3.85
714 733 4.864334 GCATGCGGTGGGGAGGAG 62.864 72.222 0.00 0.00 0.00 3.69
727 746 4.864334 GGTGGGGAGGAGCGCATG 62.864 72.222 11.47 0.00 0.00 4.06
747 766 3.190323 TATGTACGGAGGAGCGCGC 62.190 63.158 26.66 26.66 0.00 6.86
748 767 1.370172 GTATGTACGGAGGAGCGCG 60.370 63.158 0.00 0.00 0.00 6.86
749 768 1.007618 GGTATGTACGGAGGAGCGC 60.008 63.158 0.00 0.00 0.00 5.92
750 769 0.311165 CTGGTATGTACGGAGGAGCG 59.689 60.000 0.00 0.00 0.00 5.03
751 770 1.688772 TCTGGTATGTACGGAGGAGC 58.311 55.000 0.00 0.00 0.00 4.70
752 771 6.214399 GTTTATTCTGGTATGTACGGAGGAG 58.786 44.000 0.00 0.00 0.00 3.69
753 772 5.069516 GGTTTATTCTGGTATGTACGGAGGA 59.930 44.000 0.00 0.00 0.00 3.71
754 773 5.295152 GGTTTATTCTGGTATGTACGGAGG 58.705 45.833 0.00 0.00 0.00 4.30
755 774 5.163385 TGGGTTTATTCTGGTATGTACGGAG 60.163 44.000 0.00 0.00 0.00 4.63
756 775 4.715792 TGGGTTTATTCTGGTATGTACGGA 59.284 41.667 0.00 0.00 0.00 4.69
757 776 4.812626 GTGGGTTTATTCTGGTATGTACGG 59.187 45.833 0.00 0.00 0.00 4.02
758 777 5.522460 CAGTGGGTTTATTCTGGTATGTACG 59.478 44.000 0.00 0.00 0.00 3.67
759 778 6.646267 TCAGTGGGTTTATTCTGGTATGTAC 58.354 40.000 0.00 0.00 0.00 2.90
760 779 6.877668 TCAGTGGGTTTATTCTGGTATGTA 57.122 37.500 0.00 0.00 0.00 2.29
761 780 5.772393 TCAGTGGGTTTATTCTGGTATGT 57.228 39.130 0.00 0.00 0.00 2.29
762 781 5.532406 CCATCAGTGGGTTTATTCTGGTATG 59.468 44.000 0.00 0.00 42.11 2.39
763 782 5.694995 CCATCAGTGGGTTTATTCTGGTAT 58.305 41.667 0.00 0.00 42.11 2.73
764 783 5.110814 CCATCAGTGGGTTTATTCTGGTA 57.889 43.478 0.00 0.00 42.11 3.25
765 784 3.968265 CCATCAGTGGGTTTATTCTGGT 58.032 45.455 0.00 0.00 42.11 4.00
829 864 7.201582 CGACTTTACCGCAATTTTCTATTAGGT 60.202 37.037 0.00 0.00 34.78 3.08
830 865 7.123830 CGACTTTACCGCAATTTTCTATTAGG 58.876 38.462 0.00 0.00 0.00 2.69
835 874 5.681880 CAACGACTTTACCGCAATTTTCTA 58.318 37.500 0.00 0.00 0.00 2.10
868 907 1.312815 ATGTCGTAGTACTACCCCGC 58.687 55.000 24.06 13.40 32.61 6.13
1492 5325 4.090819 AGGAGAAGTTCTTGTAGGAGTCC 58.909 47.826 6.88 0.00 0.00 3.85
2252 6093 9.500785 CCCAAACATAATTTCCATAAAACTGTT 57.499 29.630 0.00 0.00 32.76 3.16
2253 6094 8.100164 CCCCAAACATAATTTCCATAAAACTGT 58.900 33.333 0.00 0.00 0.00 3.55
2285 7246 4.622260 AAATCAAAACATGGAACTGGGG 57.378 40.909 0.00 0.00 0.00 4.96
2350 7328 7.720074 CAGTATAGTGTGAGATAGTACCCTCAA 59.280 40.741 10.57 0.00 40.64 3.02
2352 7330 7.388500 GTCAGTATAGTGTGAGATAGTACCCTC 59.612 44.444 7.44 0.00 0.00 4.30
2353 7331 7.147355 TGTCAGTATAGTGTGAGATAGTACCCT 60.147 40.741 7.44 0.00 0.00 4.34
2356 7334 9.885934 CATTGTCAGTATAGTGTGAGATAGTAC 57.114 37.037 7.44 0.00 0.00 2.73
2357 7335 9.067986 CCATTGTCAGTATAGTGTGAGATAGTA 57.932 37.037 7.44 0.00 0.00 1.82
2358 7336 7.780271 TCCATTGTCAGTATAGTGTGAGATAGT 59.220 37.037 7.44 0.00 0.00 2.12
2359 7337 8.079203 GTCCATTGTCAGTATAGTGTGAGATAG 58.921 40.741 7.44 0.00 0.00 2.08
2361 7339 6.460261 CGTCCATTGTCAGTATAGTGTGAGAT 60.460 42.308 7.44 0.00 0.00 2.75
2362 7340 5.163652 CGTCCATTGTCAGTATAGTGTGAGA 60.164 44.000 7.44 0.00 0.00 3.27
2363 7341 5.037385 CGTCCATTGTCAGTATAGTGTGAG 58.963 45.833 7.44 0.00 0.00 3.51
2364 7342 4.676986 GCGTCCATTGTCAGTATAGTGTGA 60.677 45.833 7.44 0.00 0.00 3.58
2365 7343 3.551890 GCGTCCATTGTCAGTATAGTGTG 59.448 47.826 7.44 0.00 0.00 3.82
2366 7344 3.194755 TGCGTCCATTGTCAGTATAGTGT 59.805 43.478 7.44 0.00 0.00 3.55
2367 7345 3.780902 TGCGTCCATTGTCAGTATAGTG 58.219 45.455 0.69 0.69 0.00 2.74
2368 7346 4.159693 TCTTGCGTCCATTGTCAGTATAGT 59.840 41.667 0.00 0.00 0.00 2.12
2369 7347 4.682787 TCTTGCGTCCATTGTCAGTATAG 58.317 43.478 0.00 0.00 0.00 1.31
2370 7348 4.729227 TCTTGCGTCCATTGTCAGTATA 57.271 40.909 0.00 0.00 0.00 1.47
2371 7349 3.610040 TCTTGCGTCCATTGTCAGTAT 57.390 42.857 0.00 0.00 0.00 2.12
2372 7350 3.261580 CATCTTGCGTCCATTGTCAGTA 58.738 45.455 0.00 0.00 0.00 2.74
2373 7351 2.079158 CATCTTGCGTCCATTGTCAGT 58.921 47.619 0.00 0.00 0.00 3.41
2374 7352 1.399440 CCATCTTGCGTCCATTGTCAG 59.601 52.381 0.00 0.00 0.00 3.51
2375 7353 1.271325 ACCATCTTGCGTCCATTGTCA 60.271 47.619 0.00 0.00 0.00 3.58
2376 7354 1.453155 ACCATCTTGCGTCCATTGTC 58.547 50.000 0.00 0.00 0.00 3.18
2377 7355 2.747446 GTTACCATCTTGCGTCCATTGT 59.253 45.455 0.00 0.00 0.00 2.71
2378 7356 3.009723 AGTTACCATCTTGCGTCCATTG 58.990 45.455 0.00 0.00 0.00 2.82
2379 7357 3.350219 AGTTACCATCTTGCGTCCATT 57.650 42.857 0.00 0.00 0.00 3.16
2419 7397 1.598130 GCCGAAGAACAGTGCACCT 60.598 57.895 14.63 0.00 0.00 4.00
2422 7400 1.301716 GGAGCCGAAGAACAGTGCA 60.302 57.895 0.00 0.00 0.00 4.57
2425 7403 0.759346 AGTTGGAGCCGAAGAACAGT 59.241 50.000 0.00 0.00 0.00 3.55
2437 7415 2.664851 TGCGGTGCGAAGTTGGAG 60.665 61.111 0.00 0.00 0.00 3.86
2457 7435 6.520272 CCTTATGTTTGCTAGATCTAGTGCT 58.480 40.000 26.73 11.40 35.65 4.40
2462 7440 5.509163 GGACGCCTTATGTTTGCTAGATCTA 60.509 44.000 1.69 1.69 0.00 1.98
2469 7447 0.328258 AGGGACGCCTTATGTTTGCT 59.672 50.000 0.00 0.00 0.00 3.91
2471 7449 2.009774 CAGAGGGACGCCTTATGTTTG 58.990 52.381 0.00 0.00 0.00 2.93
2482 7460 3.601443 AGAACTTGATTCAGAGGGACG 57.399 47.619 0.00 0.00 40.09 4.79
2486 7464 2.675348 GGCGAAGAACTTGATTCAGAGG 59.325 50.000 0.00 0.00 40.09 3.69
2492 7470 1.168714 GCCAGGCGAAGAACTTGATT 58.831 50.000 0.00 0.00 0.00 2.57
2507 7485 2.027625 GTCGAGGTTCGTTGGCCAG 61.028 63.158 5.11 0.00 41.35 4.85
2513 7491 1.445582 GCATCGGTCGAGGTTCGTT 60.446 57.895 6.87 0.00 41.35 3.85
2522 7500 1.874019 CGAAGTCCAGCATCGGTCG 60.874 63.158 0.00 0.00 35.00 4.79
2526 7504 0.863538 CTCGTCGAAGTCCAGCATCG 60.864 60.000 0.00 0.00 39.38 3.84
2528 7506 1.107114 ATCTCGTCGAAGTCCAGCAT 58.893 50.000 0.00 0.00 0.00 3.79
2548 7526 0.900182 AGGCAGACCATGACGAGTCA 60.900 55.000 8.48 8.48 44.27 3.41
2554 7532 2.103042 GCGTGAGGCAGACCATGAC 61.103 63.158 0.00 0.00 42.87 3.06
2581 7559 4.003788 CCCTGGTCGTGAAGGCGT 62.004 66.667 0.00 0.00 31.71 5.68
2598 7577 2.592861 GATGCATGGTCTCCGGCC 60.593 66.667 2.46 0.00 0.00 6.13
2610 7589 1.922447 ACCCAATAAGGAGGTGATGCA 59.078 47.619 0.00 0.00 41.22 3.96
2646 7625 2.299867 ACAAGAACATCATGCCAAACCC 59.700 45.455 0.00 0.00 0.00 4.11
2697 7676 5.181622 CAGTAGAGTAGAAAGTCCACGTCTT 59.818 44.000 0.00 0.00 0.00 3.01
2701 7680 3.128938 CCCAGTAGAGTAGAAAGTCCACG 59.871 52.174 0.00 0.00 0.00 4.94
2728 7707 3.484721 CGACGAGCGATGTAGAAGTAACA 60.485 47.826 0.00 0.00 44.57 2.41
2729 7708 3.027710 CGACGAGCGATGTAGAAGTAAC 58.972 50.000 0.00 0.00 44.57 2.50
2737 7716 2.402282 GATGGCCGACGAGCGATGTA 62.402 60.000 9.73 0.00 44.57 2.29
2746 7725 1.154225 GCACTTTTGATGGCCGACG 60.154 57.895 0.00 0.00 0.00 5.12
2821 7800 2.018670 CGCGCATTGTCGAACGAG 59.981 61.111 8.75 0.00 0.00 4.18
2822 7801 2.712918 GACGCGCATTGTCGAACGA 61.713 57.895 5.73 0.00 0.00 3.85
2856 7835 0.613260 TTCCTGGATCTCCAACACGG 59.387 55.000 0.00 0.00 46.97 4.94
2858 7837 3.604582 CTTCTTCCTGGATCTCCAACAC 58.395 50.000 0.00 0.00 46.97 3.32
2865 7844 1.484240 CCTTCGCTTCTTCCTGGATCT 59.516 52.381 0.00 0.00 0.00 2.75
2911 7890 8.052748 AGGATGGCACTAAGTGATTAATGTAAA 58.947 33.333 0.00 0.00 35.23 2.01
2916 7895 5.300286 GCAAGGATGGCACTAAGTGATTAAT 59.700 40.000 0.00 0.00 32.79 1.40
2944 7924 0.185901 AGACATGTGTTGCCCAACCT 59.814 50.000 1.15 0.00 40.46 3.50
2975 7955 3.181465 CCTGCGAATGACATAACCTAGGT 60.181 47.826 9.21 9.21 0.00 3.08
2976 7956 3.069586 TCCTGCGAATGACATAACCTAGG 59.930 47.826 7.41 7.41 0.00 3.02
2989 7969 5.647658 TCTCACAATTATTGTTCCTGCGAAT 59.352 36.000 7.97 0.00 43.23 3.34
2993 7973 6.199937 ACATCTCACAATTATTGTTCCTGC 57.800 37.500 7.97 0.00 43.23 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.