Multiple sequence alignment - TraesCS2B01G398000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G398000 chr2B 100.000 4242 0 0 1 4242 564919828 564924069 0.000000e+00 7834.0
1 TraesCS2B01G398000 chr2B 95.762 3516 95 20 747 4242 565039284 565042765 0.000000e+00 5618.0
2 TraesCS2B01G398000 chr2B 87.791 2703 279 26 814 3498 565209837 565212506 0.000000e+00 3116.0
3 TraesCS2B01G398000 chr2B 80.672 357 35 14 1 350 565061332 565061661 3.280000e-61 246.0
4 TraesCS2B01G398000 chr2B 88.158 152 13 3 73 222 565038976 565039124 4.360000e-40 176.0
5 TraesCS2B01G398000 chr2B 81.897 116 10 6 529 644 565063946 565064050 2.100000e-13 87.9
6 TraesCS2B01G398000 chr2D 93.167 3893 195 45 1 3838 481598581 481602457 0.000000e+00 5650.0
7 TraesCS2B01G398000 chr2D 88.059 2596 245 39 935 3498 481961416 481963978 0.000000e+00 3016.0
8 TraesCS2B01G398000 chr2D 86.659 2751 290 48 818 3523 481655899 481658617 0.000000e+00 2976.0
9 TraesCS2B01G398000 chr2D 88.381 2496 234 26 1027 3498 481988424 481990887 0.000000e+00 2952.0
10 TraesCS2B01G398000 chr2D 87.057 2627 267 33 935 3518 481688568 481691164 0.000000e+00 2900.0
11 TraesCS2B01G398000 chr2D 91.749 303 21 3 3908 4208 481602455 481602755 6.560000e-113 418.0
12 TraesCS2B01G398000 chr2A 95.061 3260 135 11 608 3843 624359163 624362420 0.000000e+00 5105.0
13 TraesCS2B01G398000 chr2A 87.729 2624 261 39 935 3523 624394264 624396861 0.000000e+00 3005.0
14 TraesCS2B01G398000 chr2A 88.156 2533 251 23 990 3497 624458274 624460782 0.000000e+00 2970.0
15 TraesCS2B01G398000 chr2A 87.362 2619 264 40 935 3518 624447085 624449671 0.000000e+00 2940.0
16 TraesCS2B01G398000 chr2A 86.704 534 44 20 1 510 624358524 624359054 6.160000e-158 568.0
17 TraesCS2B01G398000 chr2A 93.617 47 3 0 413 459 624368537 624368583 2.120000e-08 71.3
18 TraesCS2B01G398000 chr1A 96.970 33 0 1 618 649 20935302 20935334 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G398000 chr2B 564919828 564924069 4241 False 7834.0 7834 100.0000 1 4242 1 chr2B.!!$F1 4241
1 TraesCS2B01G398000 chr2B 565209837 565212506 2669 False 3116.0 3116 87.7910 814 3498 1 chr2B.!!$F2 2684
2 TraesCS2B01G398000 chr2B 565038976 565042765 3789 False 2897.0 5618 91.9600 73 4242 2 chr2B.!!$F3 4169
3 TraesCS2B01G398000 chr2D 481598581 481602755 4174 False 3034.0 5650 92.4580 1 4208 2 chr2D.!!$F5 4207
4 TraesCS2B01G398000 chr2D 481961416 481963978 2562 False 3016.0 3016 88.0590 935 3498 1 chr2D.!!$F3 2563
5 TraesCS2B01G398000 chr2D 481655899 481658617 2718 False 2976.0 2976 86.6590 818 3523 1 chr2D.!!$F1 2705
6 TraesCS2B01G398000 chr2D 481988424 481990887 2463 False 2952.0 2952 88.3810 1027 3498 1 chr2D.!!$F4 2471
7 TraesCS2B01G398000 chr2D 481688568 481691164 2596 False 2900.0 2900 87.0570 935 3518 1 chr2D.!!$F2 2583
8 TraesCS2B01G398000 chr2A 624394264 624396861 2597 False 3005.0 3005 87.7290 935 3523 1 chr2A.!!$F2 2588
9 TraesCS2B01G398000 chr2A 624458274 624460782 2508 False 2970.0 2970 88.1560 990 3497 1 chr2A.!!$F4 2507
10 TraesCS2B01G398000 chr2A 624447085 624449671 2586 False 2940.0 2940 87.3620 935 3518 1 chr2A.!!$F3 2583
11 TraesCS2B01G398000 chr2A 624358524 624362420 3896 False 2836.5 5105 90.8825 1 3843 2 chr2A.!!$F5 3842

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 673 0.318955 GAACAACCATGTGCCTGTGC 60.319 55.0 0.0 0.0 40.46 4.57 F
608 737 0.528017 TGGAAGACAGTAGAGCAGCG 59.472 55.0 0.0 0.0 0.00 5.18 F
609 738 0.528470 GGAAGACAGTAGAGCAGCGT 59.472 55.0 0.0 0.0 0.00 5.07 F
1939 2224 1.289160 ACATCCTTAGCCTCCTTGCA 58.711 50.0 0.0 0.0 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2265 2550 1.595311 TCCACCATGGATAGCCTTGT 58.405 50.0 21.47 0.0 42.67 3.16 R
2789 3074 0.032815 TCACGGTCGATTGTGAGCAA 59.967 50.0 15.99 0.0 40.02 3.91 R
2922 3207 1.800805 AGCAAACACTGATGTCTCCG 58.199 50.0 0.00 0.0 38.45 4.63 R
3784 4080 2.332063 ATCGCCAAGTGAAATCGGAT 57.668 45.0 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 57 2.864343 CGCACCCCGAAGAAAATACTAG 59.136 50.000 0.00 0.00 40.02 2.57
60 66 5.064834 CCGAAGAAAATACTAGTGAAAGGCC 59.935 44.000 5.39 0.00 0.00 5.19
71 77 4.803329 AGTGAAAGGCCTATGGATCAAT 57.197 40.909 5.16 2.48 0.00 2.57
77 83 2.026449 AGGCCTATGGATCAATAGCAGC 60.026 50.000 1.29 9.97 0.00 5.25
94 104 2.678190 GCAGCTAACAACTCCTAGTGGG 60.678 54.545 0.00 0.00 0.00 4.61
118 128 1.068333 CAGAACCCCACTCGCATTTTG 60.068 52.381 0.00 0.00 0.00 2.44
169 181 1.529865 GCAAGGACCGTGTAACTGTTC 59.470 52.381 9.28 0.00 33.17 3.18
264 313 5.766150 AATGTTCCAATGTCGACAAAAGA 57.234 34.783 24.13 15.78 0.00 2.52
318 370 3.585862 GATCTCCAAGTACAGCGTTTCA 58.414 45.455 0.00 0.00 0.00 2.69
323 375 1.806542 CAAGTACAGCGTTTCAGGCAT 59.193 47.619 0.00 0.00 0.00 4.40
339 392 6.247229 TCAGGCATCAATTAGGTAAAGCTA 57.753 37.500 0.00 0.00 0.00 3.32
373 439 4.662961 CGACGCCACTCCAGTGCA 62.663 66.667 0.76 0.00 44.34 4.57
374 440 3.044305 GACGCCACTCCAGTGCAC 61.044 66.667 9.40 9.40 44.34 4.57
375 441 4.626081 ACGCCACTCCAGTGCACC 62.626 66.667 14.63 0.00 44.34 5.01
376 442 4.624364 CGCCACTCCAGTGCACCA 62.624 66.667 14.63 0.00 44.34 4.17
378 444 1.604593 GCCACTCCAGTGCACCAAT 60.605 57.895 14.63 0.00 44.34 3.16
379 445 0.322456 GCCACTCCAGTGCACCAATA 60.322 55.000 14.63 0.00 44.34 1.90
380 446 1.742761 CCACTCCAGTGCACCAATAG 58.257 55.000 14.63 8.81 44.34 1.73
381 447 1.679944 CCACTCCAGTGCACCAATAGG 60.680 57.143 14.63 8.33 44.34 2.57
382 448 1.278985 CACTCCAGTGCACCAATAGGA 59.721 52.381 14.63 12.20 39.39 2.94
383 449 1.556911 ACTCCAGTGCACCAATAGGAG 59.443 52.381 25.57 25.57 46.18 3.69
384 450 1.833630 CTCCAGTGCACCAATAGGAGA 59.166 52.381 24.18 7.83 44.12 3.71
385 451 2.237143 CTCCAGTGCACCAATAGGAGAA 59.763 50.000 24.18 3.18 44.12 2.87
386 452 2.027192 TCCAGTGCACCAATAGGAGAAC 60.027 50.000 14.63 0.00 38.69 3.01
387 453 2.290260 CCAGTGCACCAATAGGAGAACA 60.290 50.000 14.63 0.00 36.55 3.18
388 454 2.744202 CAGTGCACCAATAGGAGAACAC 59.256 50.000 14.63 0.00 36.55 3.32
389 455 2.639839 AGTGCACCAATAGGAGAACACT 59.360 45.455 14.63 0.00 36.55 3.55
390 456 3.838317 AGTGCACCAATAGGAGAACACTA 59.162 43.478 14.63 0.00 36.55 2.74
420 490 6.371389 GCTTTGATGAAGTAGGTTAACACAC 58.629 40.000 8.10 4.40 37.69 3.82
430 500 2.158682 AGGTTAACACACAGGCACATGA 60.159 45.455 8.10 0.00 0.00 3.07
461 534 0.453950 CACTGAACGCTTGAGCATGC 60.454 55.000 10.51 10.51 42.21 4.06
471 544 2.068519 CTTGAGCATGCGAGTACACAA 58.931 47.619 13.01 9.96 0.00 3.33
476 550 4.693095 TGAGCATGCGAGTACACAATAAAA 59.307 37.500 13.01 0.00 0.00 1.52
510 584 1.877680 CGACATGGGCAAACACTCTGA 60.878 52.381 0.00 0.00 0.00 3.27
511 585 2.229792 GACATGGGCAAACACTCTGAA 58.770 47.619 0.00 0.00 0.00 3.02
513 587 1.068055 CATGGGCAAACACTCTGAAGC 60.068 52.381 0.00 0.00 0.00 3.86
517 646 2.544486 GGGCAAACACTCTGAAGCAAAG 60.544 50.000 0.00 0.00 0.00 2.77
525 654 3.501445 CACTCTGAAGCAAAGAAAGGAGG 59.499 47.826 0.00 0.00 0.00 4.30
528 657 4.137543 TCTGAAGCAAAGAAAGGAGGAAC 58.862 43.478 0.00 0.00 0.00 3.62
529 658 3.885297 CTGAAGCAAAGAAAGGAGGAACA 59.115 43.478 0.00 0.00 0.00 3.18
530 659 4.277476 TGAAGCAAAGAAAGGAGGAACAA 58.723 39.130 0.00 0.00 0.00 2.83
536 665 3.884037 AGAAAGGAGGAACAACCATGT 57.116 42.857 0.00 0.00 43.14 3.21
537 666 3.490348 AGAAAGGAGGAACAACCATGTG 58.510 45.455 0.00 0.00 40.46 3.21
538 667 1.620822 AAGGAGGAACAACCATGTGC 58.379 50.000 0.00 0.00 40.46 4.57
543 672 3.871775 GAACAACCATGTGCCTGTG 57.128 52.632 0.00 0.00 40.46 3.66
544 673 0.318955 GAACAACCATGTGCCTGTGC 60.319 55.000 0.00 0.00 40.46 4.57
545 674 2.074230 AACAACCATGTGCCTGTGCG 62.074 55.000 0.00 0.00 40.46 5.34
546 675 2.203337 AACCATGTGCCTGTGCGT 60.203 55.556 0.00 0.00 41.78 5.24
547 676 2.260869 AACCATGTGCCTGTGCGTC 61.261 57.895 0.00 0.00 41.78 5.19
590 719 2.800544 ACCTGACGTTCAACTCGAAATG 59.199 45.455 0.00 0.00 34.69 2.32
599 728 4.336889 TCAACTCGAAATGGAAGACAGT 57.663 40.909 0.00 0.00 0.00 3.55
605 734 3.509967 TCGAAATGGAAGACAGTAGAGCA 59.490 43.478 0.00 0.00 0.00 4.26
606 735 3.862267 CGAAATGGAAGACAGTAGAGCAG 59.138 47.826 0.00 0.00 0.00 4.24
607 736 2.977772 ATGGAAGACAGTAGAGCAGC 57.022 50.000 0.00 0.00 0.00 5.25
608 737 0.528017 TGGAAGACAGTAGAGCAGCG 59.472 55.000 0.00 0.00 0.00 5.18
609 738 0.528470 GGAAGACAGTAGAGCAGCGT 59.472 55.000 0.00 0.00 0.00 5.07
799 943 3.893399 ACCAACCCAACCCCCGTC 61.893 66.667 0.00 0.00 0.00 4.79
999 1224 6.683974 TTTAGCACTTCTTTGCATATCTCC 57.316 37.500 0.00 0.00 45.62 3.71
1167 1414 2.807895 CGTAAGCCGGTGGTGACG 60.808 66.667 1.90 2.58 0.00 4.35
1448 1703 5.658468 TCACATGTTGATCATCTCTGTCTC 58.342 41.667 0.00 0.00 34.09 3.36
1455 1735 5.833406 TGATCATCTCTGTCTCTGAGTTC 57.167 43.478 4.32 0.61 32.50 3.01
1687 1972 2.064581 CCTACCGCTTAGGGGCACT 61.065 63.158 15.55 0.00 43.71 4.40
1759 2044 3.140814 GGCCGCCCAAACTCCATC 61.141 66.667 0.00 0.00 0.00 3.51
1794 2079 2.255881 GCACCAAGGTTAACGCGGT 61.256 57.895 12.47 6.42 0.00 5.68
1838 2123 3.149899 CAGCATGGCTTCTTCGAGT 57.850 52.632 0.00 0.00 36.40 4.18
1939 2224 1.289160 ACATCCTTAGCCTCCTTGCA 58.711 50.000 0.00 0.00 0.00 4.08
2265 2550 1.753468 CTCATCGACGTCTCTCGCGA 61.753 60.000 14.70 9.26 45.53 5.87
3297 3587 6.114187 TCAAAGTTCAGAAGGCTTCAGATA 57.886 37.500 27.70 13.47 0.00 1.98
3657 3952 3.143728 ACCGCGGACAAGAAAGTTAAAT 58.856 40.909 35.90 0.00 0.00 1.40
3667 3962 8.297426 GGACAAGAAAGTTAAATTAGTTCCCAG 58.703 37.037 0.00 0.00 0.00 4.45
3784 4080 9.661563 ATTTACCAATTTGAGTCTACGATGTTA 57.338 29.630 0.00 0.00 0.00 2.41
4155 4455 5.725362 AGCTGAAGTTAGAGACCACATAAC 58.275 41.667 0.00 0.00 0.00 1.89
4157 4457 5.578727 GCTGAAGTTAGAGACCACATAACAG 59.421 44.000 0.00 0.00 32.92 3.16
4224 4524 2.406130 GAGCATCTACAGCTGAGCATC 58.594 52.381 23.35 10.79 43.58 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 57 4.457257 GCTATTGATCCATAGGCCTTTCAC 59.543 45.833 12.58 0.00 0.00 3.18
60 66 6.933521 AGTTGTTAGCTGCTATTGATCCATAG 59.066 38.462 10.64 9.05 0.00 2.23
71 77 3.447586 CCACTAGGAGTTGTTAGCTGCTA 59.552 47.826 5.02 5.02 36.14 3.49
77 83 2.678190 GCTGCCCACTAGGAGTTGTTAG 60.678 54.545 0.00 0.00 38.24 2.34
94 104 2.743928 CGAGTGGGGTTCTGCTGC 60.744 66.667 0.00 0.00 0.00 5.25
118 128 4.327680 AGTAGCTTGGATTGTTTCTCCAC 58.672 43.478 0.00 0.00 42.43 4.02
169 181 9.741647 AAAACTGCAAGAAAAGAAATCTTAGAG 57.258 29.630 0.00 0.00 35.43 2.43
236 285 8.879342 TTTGTCGACATTGGAACATTTAAAAT 57.121 26.923 20.80 0.00 39.30 1.82
264 313 7.040755 TGCAACTTGTACTAATGTAAGCATGTT 60.041 33.333 0.00 0.00 35.15 2.71
318 370 5.377478 GGTAGCTTTACCTAATTGATGCCT 58.623 41.667 0.00 0.00 37.16 4.75
339 392 2.263741 CGGCTGCTTTGCTGAAGGT 61.264 57.895 0.00 0.00 41.56 3.50
369 435 3.059352 AGTGTTCTCCTATTGGTGCAC 57.941 47.619 8.80 8.80 34.23 4.57
371 437 6.163135 AGTATAGTGTTCTCCTATTGGTGC 57.837 41.667 0.00 0.00 34.23 5.01
373 439 5.009811 GCGAGTATAGTGTTCTCCTATTGGT 59.990 44.000 0.00 0.00 34.23 3.67
374 440 5.241949 AGCGAGTATAGTGTTCTCCTATTGG 59.758 44.000 0.00 0.00 0.00 3.16
375 441 6.320494 AGCGAGTATAGTGTTCTCCTATTG 57.680 41.667 0.00 0.00 0.00 1.90
376 442 6.963083 AAGCGAGTATAGTGTTCTCCTATT 57.037 37.500 0.00 0.00 0.00 1.73
378 444 5.884232 TCAAAGCGAGTATAGTGTTCTCCTA 59.116 40.000 0.00 0.00 0.00 2.94
379 445 4.705507 TCAAAGCGAGTATAGTGTTCTCCT 59.294 41.667 0.00 0.00 0.00 3.69
380 446 4.995124 TCAAAGCGAGTATAGTGTTCTCC 58.005 43.478 0.00 0.00 0.00 3.71
381 447 6.266323 TCATCAAAGCGAGTATAGTGTTCTC 58.734 40.000 0.00 0.00 0.00 2.87
382 448 6.208988 TCATCAAAGCGAGTATAGTGTTCT 57.791 37.500 0.00 0.00 0.00 3.01
383 449 6.531948 ACTTCATCAAAGCGAGTATAGTGTTC 59.468 38.462 0.00 0.00 38.67 3.18
384 450 6.398918 ACTTCATCAAAGCGAGTATAGTGTT 58.601 36.000 0.00 0.00 38.67 3.32
385 451 5.967088 ACTTCATCAAAGCGAGTATAGTGT 58.033 37.500 0.00 0.00 38.67 3.55
386 452 6.638873 CCTACTTCATCAAAGCGAGTATAGTG 59.361 42.308 0.00 0.00 38.67 2.74
387 453 6.321690 ACCTACTTCATCAAAGCGAGTATAGT 59.678 38.462 0.00 0.00 38.67 2.12
388 454 6.740110 ACCTACTTCATCAAAGCGAGTATAG 58.260 40.000 0.00 0.00 38.67 1.31
389 455 6.710597 ACCTACTTCATCAAAGCGAGTATA 57.289 37.500 0.00 0.00 38.67 1.47
390 456 5.599999 ACCTACTTCATCAAAGCGAGTAT 57.400 39.130 0.00 0.00 38.67 2.12
430 500 3.691118 AGCGTTCAGTGTTAATCATGCAT 59.309 39.130 0.00 0.00 0.00 3.96
461 534 5.872617 TCACCTCCATTTTATTGTGTACTCG 59.127 40.000 0.00 0.00 0.00 4.18
466 539 3.440173 CGCTCACCTCCATTTTATTGTGT 59.560 43.478 0.00 0.00 0.00 3.72
471 544 1.680338 GGCGCTCACCTCCATTTTAT 58.320 50.000 7.64 0.00 0.00 1.40
476 550 4.148825 GTCGGCGCTCACCTCCAT 62.149 66.667 7.64 0.00 0.00 3.41
510 584 3.384789 GGTTGTTCCTCCTTTCTTTGCTT 59.615 43.478 0.00 0.00 0.00 3.91
511 585 2.959030 GGTTGTTCCTCCTTTCTTTGCT 59.041 45.455 0.00 0.00 0.00 3.91
513 587 4.342092 ACATGGTTGTTCCTCCTTTCTTTG 59.658 41.667 0.00 0.00 37.07 2.77
517 646 2.029918 GCACATGGTTGTTCCTCCTTTC 60.030 50.000 0.00 0.00 37.07 2.62
525 654 0.318955 GCACAGGCACATGGTTGTTC 60.319 55.000 0.00 0.00 40.72 3.18
528 657 2.256158 CGCACAGGCACATGGTTG 59.744 61.111 0.00 0.00 41.24 3.77
529 658 2.203337 ACGCACAGGCACATGGTT 60.203 55.556 0.00 0.00 41.24 3.67
530 659 2.669569 GACGCACAGGCACATGGT 60.670 61.111 0.00 0.00 41.24 3.55
536 665 4.994471 CAGGCAGACGCACAGGCA 62.994 66.667 0.00 0.00 41.24 4.75
538 667 4.994471 TGCAGGCAGACGCACAGG 62.994 66.667 0.00 0.00 41.24 4.00
542 671 2.515757 TTTGTGCAGGCAGACGCA 60.516 55.556 0.00 0.00 41.24 5.24
543 672 2.050985 GTTTGTGCAGGCAGACGC 60.051 61.111 0.00 0.00 37.44 5.19
544 673 2.249309 CGTTTGTGCAGGCAGACG 59.751 61.111 6.09 6.09 39.79 4.18
545 674 2.639286 CCGTTTGTGCAGGCAGAC 59.361 61.111 0.00 0.00 0.00 3.51
590 719 0.528470 ACGCTGCTCTACTGTCTTCC 59.472 55.000 0.00 0.00 0.00 3.46
605 734 2.224495 GAAGAGAGGCAGAGCACGCT 62.224 60.000 0.00 0.00 0.00 5.07
606 735 1.809209 GAAGAGAGGCAGAGCACGC 60.809 63.158 0.00 0.00 0.00 5.34
607 736 1.153667 GGAAGAGAGGCAGAGCACG 60.154 63.158 0.00 0.00 0.00 5.34
608 737 1.220477 GGGAAGAGAGGCAGAGCAC 59.780 63.158 0.00 0.00 0.00 4.40
609 738 1.992277 GGGGAAGAGAGGCAGAGCA 60.992 63.158 0.00 0.00 0.00 4.26
820 971 3.708121 GGGAGAAGACGGGTTAAATAGGA 59.292 47.826 0.00 0.00 0.00 2.94
999 1224 1.811266 CCCGTTCTCGCACTCCATG 60.811 63.158 0.00 0.00 35.54 3.66
1110 1335 2.360350 ACGGCATCCAAGTGGCTG 60.360 61.111 0.00 0.00 42.03 4.85
1794 2079 3.025978 CCAGCAATCTTAAATGCCTCCA 58.974 45.455 4.46 0.00 43.57 3.86
1838 2123 2.601367 GCCTTCCTTGGGCTGCAA 60.601 61.111 0.50 0.00 45.57 4.08
1882 2167 2.044650 GATGCAAGCCCTGAGCCA 60.045 61.111 0.00 0.00 45.47 4.75
1939 2224 1.979693 GACAGCCGACAGGACCTCT 60.980 63.158 0.00 0.00 41.02 3.69
2265 2550 1.595311 TCCACCATGGATAGCCTTGT 58.405 50.000 21.47 0.00 42.67 3.16
2789 3074 0.032815 TCACGGTCGATTGTGAGCAA 59.967 50.000 15.99 0.00 40.02 3.91
2922 3207 1.800805 AGCAAACACTGATGTCTCCG 58.199 50.000 0.00 0.00 38.45 4.63
3657 3952 7.839705 ACTGACTAGTGATTATCTGGGAACTAA 59.160 37.037 0.00 0.00 35.34 2.24
3784 4080 2.332063 ATCGCCAAGTGAAATCGGAT 57.668 45.000 0.00 0.00 0.00 4.18
3886 4182 9.318041 CATAAAATGTGTCAAGTCTCTAAAACG 57.682 33.333 0.00 0.00 0.00 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.