Multiple sequence alignment - TraesCS2B01G397700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G397700 chr2B 100.000 3068 0 0 1 3068 564813896 564816963 0.000000e+00 5666
1 TraesCS2B01G397700 chr2B 97.986 1936 37 2 165 2098 741239674 741241609 0.000000e+00 3358
2 TraesCS2B01G397700 chr2B 97.779 1936 41 2 165 2098 741209941 741211876 0.000000e+00 3336
3 TraesCS2B01G397700 chr2B 97.572 1936 45 2 165 2098 615585954 615587889 0.000000e+00 3314
4 TraesCS2B01G397700 chr2B 97.107 1936 53 3 165 2098 318084988 318083054 0.000000e+00 3262
5 TraesCS2B01G397700 chr1B 98.191 1935 32 3 165 2098 20560357 20558425 0.000000e+00 3376
6 TraesCS2B01G397700 chr1B 97.829 1935 41 1 165 2098 321009970 321011904 0.000000e+00 3339
7 TraesCS2B01G397700 chr5B 97.880 1934 39 2 165 2097 610026037 610024105 0.000000e+00 3343
8 TraesCS2B01G397700 chr6B 94.626 1749 84 5 165 1905 644468875 644467129 0.000000e+00 2700
9 TraesCS2B01G397700 chr6B 97.999 1549 30 1 553 2100 131696808 131695260 0.000000e+00 2687
10 TraesCS2B01G397700 chr6B 87.923 207 21 3 2866 3068 138521936 138522142 1.100000e-59 241
11 TraesCS2B01G397700 chr7B 89.922 1935 194 1 165 2098 60136886 60138820 0.000000e+00 2492
12 TraesCS2B01G397700 chr2D 92.479 585 26 8 2126 2709 481450780 481451347 0.000000e+00 821
13 TraesCS2B01G397700 chr2D 89.441 161 8 3 2710 2868 481453555 481453708 8.680000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G397700 chr2B 564813896 564816963 3067 False 5666 5666 100.000 1 3068 1 chr2B.!!$F1 3067
1 TraesCS2B01G397700 chr2B 741239674 741241609 1935 False 3358 3358 97.986 165 2098 1 chr2B.!!$F4 1933
2 TraesCS2B01G397700 chr2B 741209941 741211876 1935 False 3336 3336 97.779 165 2098 1 chr2B.!!$F3 1933
3 TraesCS2B01G397700 chr2B 615585954 615587889 1935 False 3314 3314 97.572 165 2098 1 chr2B.!!$F2 1933
4 TraesCS2B01G397700 chr2B 318083054 318084988 1934 True 3262 3262 97.107 165 2098 1 chr2B.!!$R1 1933
5 TraesCS2B01G397700 chr1B 20558425 20560357 1932 True 3376 3376 98.191 165 2098 1 chr1B.!!$R1 1933
6 TraesCS2B01G397700 chr1B 321009970 321011904 1934 False 3339 3339 97.829 165 2098 1 chr1B.!!$F1 1933
7 TraesCS2B01G397700 chr5B 610024105 610026037 1932 True 3343 3343 97.880 165 2097 1 chr5B.!!$R1 1932
8 TraesCS2B01G397700 chr6B 644467129 644468875 1746 True 2700 2700 94.626 165 1905 1 chr6B.!!$R2 1740
9 TraesCS2B01G397700 chr6B 131695260 131696808 1548 True 2687 2687 97.999 553 2100 1 chr6B.!!$R1 1547
10 TraesCS2B01G397700 chr7B 60136886 60138820 1934 False 2492 2492 89.922 165 2098 1 chr7B.!!$F1 1933
11 TraesCS2B01G397700 chr2D 481450780 481453708 2928 False 508 821 90.960 2126 2868 2 chr2D.!!$F1 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.109365 TTTTGTCCGGCGATGCAATG 60.109 50.0 9.30 0.0 0.00 2.82 F
152 153 0.115547 TCCAGGCCAGTGTGGTAGTA 59.884 55.0 5.01 0.0 40.46 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1169 1178 1.200716 CGCCACAAATCAAGCACAGAT 59.799 47.619 0.00 0.0 0.00 2.90 R
2112 2121 0.175760 CCGTAGGCATGCACACTAGT 59.824 55.000 21.36 0.0 46.14 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.751342 TTTTGTCCGGCGATGCAA 58.249 50.000 9.30 7.58 0.00 4.08
18 19 2.262183 TTTTGTCCGGCGATGCAAT 58.738 47.368 9.30 0.00 0.00 3.56
19 20 0.109365 TTTTGTCCGGCGATGCAATG 60.109 50.000 9.30 0.00 0.00 2.82
20 21 0.957888 TTTGTCCGGCGATGCAATGA 60.958 50.000 9.30 0.00 0.00 2.57
21 22 0.747644 TTGTCCGGCGATGCAATGAT 60.748 50.000 9.30 0.00 0.00 2.45
22 23 1.280746 GTCCGGCGATGCAATGATG 59.719 57.895 9.30 0.00 0.00 3.07
23 24 1.145819 TCCGGCGATGCAATGATGA 59.854 52.632 9.30 0.00 0.00 2.92
24 25 0.250424 TCCGGCGATGCAATGATGAT 60.250 50.000 9.30 0.00 0.00 2.45
25 26 1.001860 TCCGGCGATGCAATGATGATA 59.998 47.619 9.30 0.00 0.00 2.15
26 27 1.129251 CCGGCGATGCAATGATGATAC 59.871 52.381 9.30 0.00 0.00 2.24
27 28 1.201845 CGGCGATGCAATGATGATACG 60.202 52.381 0.00 0.00 0.00 3.06
28 29 1.129251 GGCGATGCAATGATGATACGG 59.871 52.381 0.00 0.00 0.00 4.02
29 30 1.464687 GCGATGCAATGATGATACGGC 60.465 52.381 0.00 0.00 0.00 5.68
30 31 2.071540 CGATGCAATGATGATACGGCT 58.928 47.619 0.00 0.00 0.00 5.52
31 32 3.253230 CGATGCAATGATGATACGGCTA 58.747 45.455 0.00 0.00 0.00 3.93
32 33 3.305361 CGATGCAATGATGATACGGCTAG 59.695 47.826 0.00 0.00 0.00 3.42
33 34 2.416747 TGCAATGATGATACGGCTAGC 58.583 47.619 6.04 6.04 0.00 3.42
34 35 2.037641 TGCAATGATGATACGGCTAGCT 59.962 45.455 15.72 0.00 0.00 3.32
35 36 2.414481 GCAATGATGATACGGCTAGCTG 59.586 50.000 22.26 22.26 0.00 4.24
36 37 3.862264 GCAATGATGATACGGCTAGCTGA 60.862 47.826 30.16 13.76 0.00 4.26
37 38 4.502016 CAATGATGATACGGCTAGCTGAT 58.498 43.478 30.16 17.75 0.00 2.90
38 39 3.857549 TGATGATACGGCTAGCTGATC 57.142 47.619 30.16 24.12 0.00 2.92
39 40 3.157087 TGATGATACGGCTAGCTGATCA 58.843 45.455 30.16 27.99 0.00 2.92
40 41 3.766051 TGATGATACGGCTAGCTGATCAT 59.234 43.478 30.76 30.76 39.39 2.45
41 42 3.582714 TGATACGGCTAGCTGATCATG 57.417 47.619 30.16 6.43 0.00 3.07
42 43 2.893489 TGATACGGCTAGCTGATCATGT 59.107 45.455 30.16 8.93 0.00 3.21
43 44 3.321968 TGATACGGCTAGCTGATCATGTT 59.678 43.478 30.16 8.17 0.00 2.71
44 45 2.698855 ACGGCTAGCTGATCATGTTT 57.301 45.000 30.16 1.50 0.00 2.83
45 46 2.283298 ACGGCTAGCTGATCATGTTTG 58.717 47.619 30.16 1.10 0.00 2.93
46 47 2.283298 CGGCTAGCTGATCATGTTTGT 58.717 47.619 19.34 0.00 0.00 2.83
47 48 3.118775 ACGGCTAGCTGATCATGTTTGTA 60.119 43.478 30.16 0.00 0.00 2.41
48 49 3.246226 CGGCTAGCTGATCATGTTTGTAC 59.754 47.826 19.34 0.00 0.00 2.90
49 50 4.446371 GGCTAGCTGATCATGTTTGTACT 58.554 43.478 15.72 0.00 0.00 2.73
50 51 4.878397 GGCTAGCTGATCATGTTTGTACTT 59.122 41.667 15.72 0.00 0.00 2.24
51 52 5.220739 GGCTAGCTGATCATGTTTGTACTTG 60.221 44.000 15.72 0.00 0.00 3.16
52 53 4.691860 AGCTGATCATGTTTGTACTTGC 57.308 40.909 0.00 0.00 31.38 4.01
53 54 4.074259 AGCTGATCATGTTTGTACTTGCA 58.926 39.130 0.00 0.00 31.38 4.08
54 55 4.703575 AGCTGATCATGTTTGTACTTGCAT 59.296 37.500 0.00 0.00 31.38 3.96
55 56 5.184479 AGCTGATCATGTTTGTACTTGCATT 59.816 36.000 0.00 0.00 31.38 3.56
56 57 5.865552 GCTGATCATGTTTGTACTTGCATTT 59.134 36.000 0.00 0.00 31.38 2.32
57 58 6.183360 GCTGATCATGTTTGTACTTGCATTTG 60.183 38.462 0.00 0.00 31.38 2.32
58 59 6.979465 TGATCATGTTTGTACTTGCATTTGA 58.021 32.000 0.00 0.00 31.38 2.69
59 60 7.432059 TGATCATGTTTGTACTTGCATTTGAA 58.568 30.769 0.00 0.00 31.38 2.69
60 61 7.595875 TGATCATGTTTGTACTTGCATTTGAAG 59.404 33.333 0.00 0.00 31.38 3.02
61 62 7.036996 TCATGTTTGTACTTGCATTTGAAGA 57.963 32.000 0.00 0.00 31.38 2.87
62 63 7.140705 TCATGTTTGTACTTGCATTTGAAGAG 58.859 34.615 0.00 0.00 31.38 2.85
63 64 5.280945 TGTTTGTACTTGCATTTGAAGAGC 58.719 37.500 0.00 0.00 0.00 4.09
64 65 4.503741 TTGTACTTGCATTTGAAGAGCC 57.496 40.909 0.00 0.00 0.00 4.70
65 66 2.483877 TGTACTTGCATTTGAAGAGCCG 59.516 45.455 0.00 0.00 0.00 5.52
66 67 0.883833 ACTTGCATTTGAAGAGCCGG 59.116 50.000 0.00 0.00 0.00 6.13
67 68 1.167851 CTTGCATTTGAAGAGCCGGA 58.832 50.000 5.05 0.00 0.00 5.14
68 69 1.747355 CTTGCATTTGAAGAGCCGGAT 59.253 47.619 5.05 0.00 0.00 4.18
69 70 1.838112 TGCATTTGAAGAGCCGGATT 58.162 45.000 5.05 0.00 0.00 3.01
70 71 2.170166 TGCATTTGAAGAGCCGGATTT 58.830 42.857 5.05 0.00 0.00 2.17
71 72 2.094597 TGCATTTGAAGAGCCGGATTTG 60.095 45.455 5.05 0.00 0.00 2.32
72 73 2.094545 GCATTTGAAGAGCCGGATTTGT 60.095 45.455 5.05 0.00 0.00 2.83
73 74 3.614870 GCATTTGAAGAGCCGGATTTGTT 60.615 43.478 5.05 0.00 0.00 2.83
74 75 4.380444 GCATTTGAAGAGCCGGATTTGTTA 60.380 41.667 5.05 0.00 0.00 2.41
75 76 5.708948 CATTTGAAGAGCCGGATTTGTTAA 58.291 37.500 5.05 0.00 0.00 2.01
76 77 5.371115 TTTGAAGAGCCGGATTTGTTAAG 57.629 39.130 5.05 0.00 0.00 1.85
77 78 4.015872 TGAAGAGCCGGATTTGTTAAGT 57.984 40.909 5.05 0.00 0.00 2.24
78 79 3.751175 TGAAGAGCCGGATTTGTTAAGTG 59.249 43.478 5.05 0.00 0.00 3.16
79 80 2.084546 AGAGCCGGATTTGTTAAGTGC 58.915 47.619 5.05 0.00 0.00 4.40
80 81 0.802494 AGCCGGATTTGTTAAGTGCG 59.198 50.000 5.05 0.00 0.00 5.34
81 82 0.800012 GCCGGATTTGTTAAGTGCGA 59.200 50.000 5.05 0.00 0.00 5.10
82 83 1.400494 GCCGGATTTGTTAAGTGCGAT 59.600 47.619 5.05 0.00 0.00 4.58
83 84 2.538939 GCCGGATTTGTTAAGTGCGATC 60.539 50.000 5.05 0.00 0.00 3.69
84 85 2.285602 CCGGATTTGTTAAGTGCGATCG 60.286 50.000 11.69 11.69 0.00 3.69
85 86 2.347452 CGGATTTGTTAAGTGCGATCGT 59.653 45.455 17.81 0.00 0.00 3.73
86 87 3.548668 CGGATTTGTTAAGTGCGATCGTA 59.451 43.478 17.81 9.90 0.00 3.43
87 88 4.317139 CGGATTTGTTAAGTGCGATCGTAG 60.317 45.833 17.81 0.00 0.00 3.51
88 89 4.802039 GGATTTGTTAAGTGCGATCGTAGA 59.198 41.667 17.81 0.00 45.75 2.59
89 90 5.276254 GGATTTGTTAAGTGCGATCGTAGAC 60.276 44.000 17.81 11.06 42.51 2.59
90 91 2.777494 TGTTAAGTGCGATCGTAGACG 58.223 47.619 17.81 0.00 42.51 4.18
98 99 2.297547 CGATCGTAGACGCTCTAACC 57.702 55.000 7.03 0.00 42.51 2.85
99 100 1.865970 CGATCGTAGACGCTCTAACCT 59.134 52.381 7.03 0.00 42.51 3.50
100 101 2.348685 CGATCGTAGACGCTCTAACCTG 60.349 54.545 7.03 0.00 42.51 4.00
101 102 0.731417 TCGTAGACGCTCTAACCTGC 59.269 55.000 0.00 0.00 39.60 4.85
102 103 0.733729 CGTAGACGCTCTAACCTGCT 59.266 55.000 0.00 0.00 29.58 4.24
103 104 1.532090 CGTAGACGCTCTAACCTGCTG 60.532 57.143 0.00 0.00 29.58 4.41
104 105 1.473278 GTAGACGCTCTAACCTGCTGT 59.527 52.381 0.00 0.00 29.58 4.40
105 106 1.835494 AGACGCTCTAACCTGCTGTA 58.165 50.000 0.00 0.00 0.00 2.74
106 107 2.379972 AGACGCTCTAACCTGCTGTAT 58.620 47.619 0.00 0.00 0.00 2.29
107 108 2.359531 AGACGCTCTAACCTGCTGTATC 59.640 50.000 0.00 0.00 0.00 2.24
108 109 2.359531 GACGCTCTAACCTGCTGTATCT 59.640 50.000 0.00 0.00 0.00 1.98
109 110 2.099921 ACGCTCTAACCTGCTGTATCTG 59.900 50.000 0.00 0.00 0.00 2.90
110 111 2.359214 CGCTCTAACCTGCTGTATCTGA 59.641 50.000 0.00 0.00 0.00 3.27
111 112 3.005261 CGCTCTAACCTGCTGTATCTGAT 59.995 47.826 0.00 0.00 0.00 2.90
112 113 4.305769 GCTCTAACCTGCTGTATCTGATG 58.694 47.826 0.00 0.00 0.00 3.07
113 114 4.798924 GCTCTAACCTGCTGTATCTGATGG 60.799 50.000 0.00 0.00 0.00 3.51
114 115 4.546674 TCTAACCTGCTGTATCTGATGGA 58.453 43.478 0.00 0.00 0.00 3.41
115 116 5.150715 TCTAACCTGCTGTATCTGATGGAT 58.849 41.667 0.00 0.00 38.38 3.41
116 117 4.785346 AACCTGCTGTATCTGATGGATT 57.215 40.909 0.00 0.00 35.98 3.01
117 118 4.082665 ACCTGCTGTATCTGATGGATTG 57.917 45.455 0.00 0.00 35.98 2.67
118 119 3.713248 ACCTGCTGTATCTGATGGATTGA 59.287 43.478 0.00 0.00 35.98 2.57
119 120 4.063689 CCTGCTGTATCTGATGGATTGAC 58.936 47.826 0.00 0.00 35.98 3.18
120 121 4.443881 CCTGCTGTATCTGATGGATTGACA 60.444 45.833 0.00 0.00 35.98 3.58
121 122 4.700700 TGCTGTATCTGATGGATTGACAG 58.299 43.478 10.28 10.28 40.93 3.51
122 123 4.063689 GCTGTATCTGATGGATTGACAGG 58.936 47.826 14.49 1.83 39.55 4.00
123 124 4.063689 CTGTATCTGATGGATTGACAGGC 58.936 47.826 0.00 0.00 37.37 4.85
124 125 2.251409 ATCTGATGGATTGACAGGCG 57.749 50.000 0.00 0.00 33.19 5.52
125 126 0.178767 TCTGATGGATTGACAGGCGG 59.821 55.000 0.00 0.00 33.19 6.13
126 127 1.442526 CTGATGGATTGACAGGCGGC 61.443 60.000 0.00 0.00 0.00 6.53
127 128 2.124151 ATGGATTGACAGGCGGCC 60.124 61.111 12.11 12.11 0.00 6.13
128 129 2.891941 GATGGATTGACAGGCGGCCA 62.892 60.000 23.09 0.00 0.00 5.36
129 130 2.124151 GGATTGACAGGCGGCCAT 60.124 61.111 23.09 8.88 0.00 4.40
130 131 2.189499 GGATTGACAGGCGGCCATC 61.189 63.158 23.09 18.19 0.00 3.51
131 132 2.514592 ATTGACAGGCGGCCATCG 60.515 61.111 23.09 11.62 42.76 3.84
132 133 4.776322 TTGACAGGCGGCCATCGG 62.776 66.667 23.09 10.00 39.69 4.18
142 143 4.864334 GCCATCGGTCCAGGCCAG 62.864 72.222 5.01 0.00 42.58 4.85
143 144 3.402681 CCATCGGTCCAGGCCAGT 61.403 66.667 5.01 0.00 0.00 4.00
144 145 2.124983 CATCGGTCCAGGCCAGTG 60.125 66.667 5.01 0.00 0.00 3.66
145 146 2.607750 ATCGGTCCAGGCCAGTGT 60.608 61.111 5.01 0.00 0.00 3.55
146 147 2.959484 ATCGGTCCAGGCCAGTGTG 61.959 63.158 5.01 0.00 0.00 3.82
147 148 4.704833 CGGTCCAGGCCAGTGTGG 62.705 72.222 5.01 3.38 41.55 4.17
148 149 3.570212 GGTCCAGGCCAGTGTGGT 61.570 66.667 5.01 0.00 40.46 4.16
149 150 2.221299 GGTCCAGGCCAGTGTGGTA 61.221 63.158 5.01 0.00 40.46 3.25
150 151 1.296715 GTCCAGGCCAGTGTGGTAG 59.703 63.158 5.01 0.00 40.46 3.18
151 152 1.152118 TCCAGGCCAGTGTGGTAGT 60.152 57.895 5.01 0.00 40.46 2.73
152 153 0.115547 TCCAGGCCAGTGTGGTAGTA 59.884 55.000 5.01 0.00 40.46 1.82
153 154 1.204146 CCAGGCCAGTGTGGTAGTAT 58.796 55.000 5.01 0.00 40.46 2.12
154 155 1.134401 CCAGGCCAGTGTGGTAGTATG 60.134 57.143 5.01 0.00 40.46 2.39
155 156 1.134401 CAGGCCAGTGTGGTAGTATGG 60.134 57.143 5.01 0.00 40.46 2.74
156 157 0.909623 GGCCAGTGTGGTAGTATGGT 59.090 55.000 0.00 0.00 40.46 3.55
157 158 1.406887 GGCCAGTGTGGTAGTATGGTG 60.407 57.143 0.00 0.00 40.46 4.17
158 159 1.406887 GCCAGTGTGGTAGTATGGTGG 60.407 57.143 0.00 0.00 40.46 4.61
159 160 1.209504 CCAGTGTGGTAGTATGGTGGG 59.790 57.143 0.00 0.00 31.35 4.61
160 161 1.209504 CAGTGTGGTAGTATGGTGGGG 59.790 57.143 0.00 0.00 0.00 4.96
161 162 1.203389 AGTGTGGTAGTATGGTGGGGT 60.203 52.381 0.00 0.00 0.00 4.95
162 163 1.631898 GTGTGGTAGTATGGTGGGGTT 59.368 52.381 0.00 0.00 0.00 4.11
163 164 1.910671 TGTGGTAGTATGGTGGGGTTC 59.089 52.381 0.00 0.00 0.00 3.62
564 565 2.559668 TCTTTCCGGACTCGTTATGTGT 59.440 45.455 1.83 0.00 33.95 3.72
906 908 2.882927 AGTTGCGTGTTCTGACTGTA 57.117 45.000 0.00 0.00 0.00 2.74
978 987 8.236084 TCTCAGTTAAAAGTGCGTATAAGTTC 57.764 34.615 0.00 0.00 0.00 3.01
1163 1172 6.362248 ACAGAGTTAAACACCACCAAACTAT 58.638 36.000 0.00 0.00 30.83 2.12
1169 1178 7.504238 AGTTAAACACCACCAAACTATCATTGA 59.496 33.333 0.00 0.00 0.00 2.57
1178 1187 5.948162 ACCAAACTATCATTGATCTGTGCTT 59.052 36.000 1.55 0.00 0.00 3.91
1204 1213 5.592104 TTGTGGCGTAGAAGATGAATCTA 57.408 39.130 0.00 0.00 35.76 1.98
1534 1543 6.945636 TCAAAGGTAAAGAGAGGGTGAATA 57.054 37.500 0.00 0.00 0.00 1.75
1541 1550 6.987404 GGTAAAGAGAGGGTGAATAGCTTAAG 59.013 42.308 0.00 0.00 0.00 1.85
1660 1669 2.591429 CTGCAAGTGTGGGCGTCA 60.591 61.111 0.00 0.00 0.00 4.35
1748 1757 1.404851 GGAAGAAGCGGAACTGAGAGG 60.405 57.143 0.00 0.00 0.00 3.69
1964 1973 2.742372 GGTGGCGCACGAGATTGT 60.742 61.111 10.83 0.00 34.83 2.71
2014 2023 4.980573 TGGTGTGCTCCTTAATAGTGTTT 58.019 39.130 0.00 0.00 0.00 2.83
2101 2110 9.958180 ATGGAAGGGGTTTTAAAGAAAAATATG 57.042 29.630 0.00 0.00 39.22 1.78
2102 2111 8.379331 TGGAAGGGGTTTTAAAGAAAAATATGG 58.621 33.333 0.00 0.00 39.22 2.74
2103 2112 7.335924 GGAAGGGGTTTTAAAGAAAAATATGGC 59.664 37.037 0.00 0.00 39.22 4.40
2104 2113 7.323052 AGGGGTTTTAAAGAAAAATATGGCA 57.677 32.000 0.00 0.00 39.22 4.92
2105 2114 7.750655 AGGGGTTTTAAAGAAAAATATGGCAA 58.249 30.769 0.00 0.00 39.22 4.52
2106 2115 7.882791 AGGGGTTTTAAAGAAAAATATGGCAAG 59.117 33.333 0.00 0.00 39.22 4.01
2107 2116 7.361713 GGGGTTTTAAAGAAAAATATGGCAAGC 60.362 37.037 0.00 0.00 39.22 4.01
2108 2117 7.361713 GGGTTTTAAAGAAAAATATGGCAAGCC 60.362 37.037 3.61 3.61 39.22 4.35
2109 2118 7.174080 GGTTTTAAAGAAAAATATGGCAAGCCA 59.826 33.333 17.19 17.19 43.55 4.75
2110 2119 8.229811 GTTTTAAAGAAAAATATGGCAAGCCAG 58.770 33.333 19.65 0.00 43.10 4.85
2111 2120 7.936301 TTTTAAAGAAAAATATGGCAAGCCAGT 59.064 29.630 19.65 7.88 39.65 4.00
2119 2128 1.348064 TGGCAAGCCAGTACTAGTGT 58.652 50.000 10.24 0.00 41.89 3.55
2120 2129 1.001974 TGGCAAGCCAGTACTAGTGTG 59.998 52.381 10.24 2.77 41.89 3.82
2121 2130 1.079503 GCAAGCCAGTACTAGTGTGC 58.920 55.000 5.39 2.71 0.00 4.57
2122 2131 1.608025 GCAAGCCAGTACTAGTGTGCA 60.608 52.381 5.39 0.00 0.00 4.57
2123 2132 2.936993 GCAAGCCAGTACTAGTGTGCAT 60.937 50.000 5.39 0.00 0.00 3.96
2124 2133 2.674852 CAAGCCAGTACTAGTGTGCATG 59.325 50.000 5.39 2.48 0.00 4.06
2191 2200 0.028770 GGAGATGAGTCGAGTCGCAG 59.971 60.000 15.29 0.00 0.00 5.18
2194 2203 2.352034 GAGATGAGTCGAGTCGCAGTTA 59.648 50.000 15.29 0.00 0.00 2.24
2216 2225 3.646946 AGGAACTTCGTCGTCCTTTAAC 58.353 45.455 0.00 0.00 27.25 2.01
2313 2322 1.202087 GGAGACTGTCGACGATCACTG 60.202 57.143 18.04 0.00 0.00 3.66
2348 2357 0.664466 CGATCGCATCGCATACAGGT 60.664 55.000 0.26 0.00 46.55 4.00
2379 2388 4.700213 ACATGTTAGTTACTGTGGCCATTC 59.300 41.667 9.72 0.00 0.00 2.67
2380 2389 4.359434 TGTTAGTTACTGTGGCCATTCA 57.641 40.909 9.72 1.25 0.00 2.57
2381 2390 4.323417 TGTTAGTTACTGTGGCCATTCAG 58.677 43.478 19.19 19.19 37.65 3.02
2391 2400 1.144708 TGGCCATTCAGTTGGAAGTGA 59.855 47.619 0.00 0.00 39.30 3.41
2412 2421 1.425267 CGGTGTGTGAACGTCAAGCA 61.425 55.000 0.00 0.00 0.00 3.91
2443 2452 0.613260 AGCAAAGGAGGCATGTACGA 59.387 50.000 0.00 0.00 0.00 3.43
2444 2453 1.210478 AGCAAAGGAGGCATGTACGAT 59.790 47.619 0.00 0.00 0.00 3.73
2445 2454 2.017049 GCAAAGGAGGCATGTACGATT 58.983 47.619 0.00 0.00 0.00 3.34
2446 2455 2.223340 GCAAAGGAGGCATGTACGATTG 60.223 50.000 0.00 0.00 0.00 2.67
2447 2456 3.009723 CAAAGGAGGCATGTACGATTGT 58.990 45.455 0.00 0.00 0.00 2.71
2448 2457 4.188462 CAAAGGAGGCATGTACGATTGTA 58.812 43.478 0.00 0.00 0.00 2.41
2514 2523 3.565482 CAGCATGTGACCTTGTAACAGTT 59.435 43.478 0.00 0.00 29.58 3.16
2544 2553 1.096416 GAGTAGTACTGCTGACGCCT 58.904 55.000 18.92 0.00 34.43 5.52
2547 2556 1.065251 GTAGTACTGCTGACGCCTACC 59.935 57.143 5.39 0.00 34.43 3.18
2559 2568 2.467826 GCCTACCTACGTCGACGCT 61.468 63.158 35.92 24.48 44.43 5.07
2572 2581 2.594592 ACGCTTTTCGGCAAGGCT 60.595 55.556 0.00 0.00 43.86 4.58
2583 2592 2.101750 TCGGCAAGGCTAACATCGATTA 59.898 45.455 0.00 0.00 0.00 1.75
2607 2616 1.444119 TTGCACCAGAAAGACGTGGC 61.444 55.000 0.00 0.00 37.34 5.01
2611 2620 2.742372 CAGAAAGACGTGGCCCCG 60.742 66.667 5.91 5.91 0.00 5.73
2664 2673 2.225019 GCGATCGAATTCAATGCTGGAT 59.775 45.455 21.57 0.00 0.00 3.41
2672 2681 3.558931 TTCAATGCTGGATCCATACGT 57.441 42.857 16.63 9.37 0.00 3.57
2682 2691 5.558818 CTGGATCCATACGTACCTAGTAGT 58.441 45.833 16.63 0.00 0.00 2.73
2683 2692 6.686484 TGGATCCATACGTACCTAGTAGTA 57.314 41.667 11.44 0.00 0.00 1.82
2684 2693 6.467677 TGGATCCATACGTACCTAGTAGTAC 58.532 44.000 11.44 0.00 39.41 2.73
2685 2694 6.270927 TGGATCCATACGTACCTAGTAGTACT 59.729 42.308 11.44 8.14 40.42 2.73
2738 4954 5.200483 AGTTTTGTTTTCACATGAGAGGGA 58.800 37.500 0.00 0.00 31.06 4.20
2786 5002 1.072331 GAGTGGGAAGAAGAGTTGGCA 59.928 52.381 0.00 0.00 0.00 4.92
2821 5037 0.038166 ATGCCACCGGAGTTGTGATT 59.962 50.000 9.46 0.00 35.74 2.57
2822 5038 0.605319 TGCCACCGGAGTTGTGATTC 60.605 55.000 9.46 0.00 35.74 2.52
2826 5042 2.341257 CACCGGAGTTGTGATTCTGAG 58.659 52.381 9.46 0.00 35.74 3.35
2849 5065 1.026718 GGCAATCGTTGTGGGAGAGG 61.027 60.000 0.00 0.00 0.00 3.69
2855 5071 0.900647 CGTTGTGGGAGAGGGAGAGT 60.901 60.000 0.00 0.00 0.00 3.24
2856 5072 0.899019 GTTGTGGGAGAGGGAGAGTC 59.101 60.000 0.00 0.00 0.00 3.36
2869 5085 3.145551 GAGTCTCCGCCGGCCTTA 61.146 66.667 23.46 5.21 0.00 2.69
2870 5086 3.140225 GAGTCTCCGCCGGCCTTAG 62.140 68.421 23.46 15.82 0.00 2.18
2871 5087 3.145551 GTCTCCGCCGGCCTTAGA 61.146 66.667 23.46 18.02 0.00 2.10
2872 5088 2.833582 TCTCCGCCGGCCTTAGAG 60.834 66.667 23.46 20.83 0.00 2.43
2873 5089 4.593864 CTCCGCCGGCCTTAGAGC 62.594 72.222 23.46 0.00 0.00 4.09
2875 5091 4.467084 CCGCCGGCCTTAGAGCAA 62.467 66.667 23.46 0.00 0.00 3.91
2876 5092 2.203070 CGCCGGCCTTAGAGCAAT 60.203 61.111 23.46 0.00 0.00 3.56
2877 5093 1.819632 CGCCGGCCTTAGAGCAATT 60.820 57.895 23.46 0.00 0.00 2.32
2878 5094 1.776034 CGCCGGCCTTAGAGCAATTC 61.776 60.000 23.46 0.00 0.00 2.17
2879 5095 0.464554 GCCGGCCTTAGAGCAATTCT 60.465 55.000 18.11 0.00 40.06 2.40
2880 5096 1.202651 GCCGGCCTTAGAGCAATTCTA 60.203 52.381 18.11 0.00 37.36 2.10
2881 5097 2.760374 CCGGCCTTAGAGCAATTCTAG 58.240 52.381 0.00 0.00 39.50 2.43
2882 5098 2.103263 CCGGCCTTAGAGCAATTCTAGT 59.897 50.000 0.00 0.00 39.50 2.57
2883 5099 3.321111 CCGGCCTTAGAGCAATTCTAGTA 59.679 47.826 0.00 0.00 39.50 1.82
2884 5100 4.551388 CGGCCTTAGAGCAATTCTAGTAG 58.449 47.826 0.00 0.00 39.50 2.57
2885 5101 4.278669 CGGCCTTAGAGCAATTCTAGTAGA 59.721 45.833 0.00 0.00 39.50 2.59
2886 5102 5.563867 CGGCCTTAGAGCAATTCTAGTAGAG 60.564 48.000 0.00 0.00 39.50 2.43
2887 5103 5.536916 GGCCTTAGAGCAATTCTAGTAGAGA 59.463 44.000 0.00 0.00 39.50 3.10
2888 5104 6.443792 GCCTTAGAGCAATTCTAGTAGAGAC 58.556 44.000 0.00 0.00 39.50 3.36
2889 5105 6.516028 GCCTTAGAGCAATTCTAGTAGAGACC 60.516 46.154 0.00 0.00 39.50 3.85
2890 5106 6.775629 CCTTAGAGCAATTCTAGTAGAGACCT 59.224 42.308 0.00 0.00 39.50 3.85
2891 5107 7.040686 CCTTAGAGCAATTCTAGTAGAGACCTC 60.041 44.444 0.00 5.74 39.50 3.85
2892 5108 5.761205 AGAGCAATTCTAGTAGAGACCTCA 58.239 41.667 15.50 0.00 33.23 3.86
2893 5109 6.191315 AGAGCAATTCTAGTAGAGACCTCAA 58.809 40.000 15.50 0.00 33.23 3.02
2894 5110 6.321181 AGAGCAATTCTAGTAGAGACCTCAAG 59.679 42.308 15.50 0.00 33.23 3.02
2895 5111 5.047188 GCAATTCTAGTAGAGACCTCAAGC 58.953 45.833 0.00 0.00 32.31 4.01
2896 5112 5.596845 CAATTCTAGTAGAGACCTCAAGCC 58.403 45.833 0.00 0.00 32.31 4.35
2897 5113 3.300239 TCTAGTAGAGACCTCAAGCCC 57.700 52.381 0.00 0.00 0.00 5.19
2898 5114 2.853707 TCTAGTAGAGACCTCAAGCCCT 59.146 50.000 0.00 0.00 0.00 5.19
2899 5115 2.153034 AGTAGAGACCTCAAGCCCTC 57.847 55.000 0.00 0.00 0.00 4.30
2900 5116 1.359474 AGTAGAGACCTCAAGCCCTCA 59.641 52.381 0.00 0.00 0.00 3.86
2901 5117 2.180276 GTAGAGACCTCAAGCCCTCAA 58.820 52.381 0.00 0.00 0.00 3.02
2902 5118 1.734655 AGAGACCTCAAGCCCTCAAA 58.265 50.000 0.00 0.00 0.00 2.69
2903 5119 1.349357 AGAGACCTCAAGCCCTCAAAC 59.651 52.381 0.00 0.00 0.00 2.93
2904 5120 0.402121 AGACCTCAAGCCCTCAAACC 59.598 55.000 0.00 0.00 0.00 3.27
2905 5121 0.609406 GACCTCAAGCCCTCAAACCC 60.609 60.000 0.00 0.00 0.00 4.11
2906 5122 1.068352 ACCTCAAGCCCTCAAACCCT 61.068 55.000 0.00 0.00 0.00 4.34
2907 5123 0.113190 CCTCAAGCCCTCAAACCCTT 59.887 55.000 0.00 0.00 0.00 3.95
2908 5124 1.354368 CCTCAAGCCCTCAAACCCTTA 59.646 52.381 0.00 0.00 0.00 2.69
2909 5125 2.225017 CCTCAAGCCCTCAAACCCTTAA 60.225 50.000 0.00 0.00 0.00 1.85
2910 5126 3.496331 CTCAAGCCCTCAAACCCTTAAA 58.504 45.455 0.00 0.00 0.00 1.52
2911 5127 3.895041 CTCAAGCCCTCAAACCCTTAAAA 59.105 43.478 0.00 0.00 0.00 1.52
2912 5128 4.290942 TCAAGCCCTCAAACCCTTAAAAA 58.709 39.130 0.00 0.00 0.00 1.94
2913 5129 4.904853 TCAAGCCCTCAAACCCTTAAAAAT 59.095 37.500 0.00 0.00 0.00 1.82
2914 5130 6.078664 TCAAGCCCTCAAACCCTTAAAAATA 58.921 36.000 0.00 0.00 0.00 1.40
2915 5131 6.555360 TCAAGCCCTCAAACCCTTAAAAATAA 59.445 34.615 0.00 0.00 0.00 1.40
2916 5132 6.354794 AGCCCTCAAACCCTTAAAAATAAC 57.645 37.500 0.00 0.00 0.00 1.89
2917 5133 6.082031 AGCCCTCAAACCCTTAAAAATAACT 58.918 36.000 0.00 0.00 0.00 2.24
2918 5134 6.014584 AGCCCTCAAACCCTTAAAAATAACTG 60.015 38.462 0.00 0.00 0.00 3.16
2919 5135 6.239487 GCCCTCAAACCCTTAAAAATAACTGT 60.239 38.462 0.00 0.00 0.00 3.55
2920 5136 7.688328 GCCCTCAAACCCTTAAAAATAACTGTT 60.688 37.037 0.00 0.00 0.00 3.16
2921 5137 8.208224 CCCTCAAACCCTTAAAAATAACTGTTT 58.792 33.333 0.00 0.00 0.00 2.83
2922 5138 9.607988 CCTCAAACCCTTAAAAATAACTGTTTT 57.392 29.630 0.00 0.00 32.94 2.43
2969 5185 8.768957 AATCGTAGACTAGAACTTTTAAACCC 57.231 34.615 0.00 0.00 42.51 4.11
2970 5186 7.530426 TCGTAGACTAGAACTTTTAAACCCT 57.470 36.000 0.00 0.00 0.00 4.34
2971 5187 7.955918 TCGTAGACTAGAACTTTTAAACCCTT 58.044 34.615 0.00 0.00 0.00 3.95
2972 5188 9.077885 TCGTAGACTAGAACTTTTAAACCCTTA 57.922 33.333 0.00 0.00 0.00 2.69
2973 5189 9.696917 CGTAGACTAGAACTTTTAAACCCTTAA 57.303 33.333 0.00 0.00 0.00 1.85
2978 5194 9.006839 ACTAGAACTTTTAAACCCTTAAATCCG 57.993 33.333 0.00 0.00 36.97 4.18
2979 5195 7.828508 AGAACTTTTAAACCCTTAAATCCGT 57.171 32.000 0.00 0.00 36.97 4.69
2980 5196 8.922931 AGAACTTTTAAACCCTTAAATCCGTA 57.077 30.769 0.00 0.00 36.97 4.02
2981 5197 9.353431 AGAACTTTTAAACCCTTAAATCCGTAA 57.647 29.630 0.00 0.00 36.97 3.18
2982 5198 9.964303 GAACTTTTAAACCCTTAAATCCGTAAA 57.036 29.630 0.00 0.00 36.97 2.01
3013 5229 4.741928 AGGTCCAACCCTCAAACTATTT 57.258 40.909 0.00 0.00 39.75 1.40
3014 5230 4.663334 AGGTCCAACCCTCAAACTATTTC 58.337 43.478 0.00 0.00 39.75 2.17
3015 5231 4.354087 AGGTCCAACCCTCAAACTATTTCT 59.646 41.667 0.00 0.00 39.75 2.52
3016 5232 4.700692 GGTCCAACCCTCAAACTATTTCTC 59.299 45.833 0.00 0.00 30.04 2.87
3017 5233 5.313712 GTCCAACCCTCAAACTATTTCTCA 58.686 41.667 0.00 0.00 0.00 3.27
3018 5234 5.768164 GTCCAACCCTCAAACTATTTCTCAA 59.232 40.000 0.00 0.00 0.00 3.02
3019 5235 5.768164 TCCAACCCTCAAACTATTTCTCAAC 59.232 40.000 0.00 0.00 0.00 3.18
3020 5236 5.048013 CCAACCCTCAAACTATTTCTCAACC 60.048 44.000 0.00 0.00 0.00 3.77
3021 5237 5.584551 ACCCTCAAACTATTTCTCAACCT 57.415 39.130 0.00 0.00 0.00 3.50
3022 5238 5.316987 ACCCTCAAACTATTTCTCAACCTG 58.683 41.667 0.00 0.00 0.00 4.00
3023 5239 5.163088 ACCCTCAAACTATTTCTCAACCTGT 60.163 40.000 0.00 0.00 0.00 4.00
3024 5240 6.043938 ACCCTCAAACTATTTCTCAACCTGTA 59.956 38.462 0.00 0.00 0.00 2.74
3025 5241 6.595716 CCCTCAAACTATTTCTCAACCTGTAG 59.404 42.308 0.00 0.00 0.00 2.74
3026 5242 7.386851 CCTCAAACTATTTCTCAACCTGTAGA 58.613 38.462 0.00 0.00 0.00 2.59
3027 5243 7.878127 CCTCAAACTATTTCTCAACCTGTAGAA 59.122 37.037 0.00 0.00 0.00 2.10
3028 5244 8.833231 TCAAACTATTTCTCAACCTGTAGAAG 57.167 34.615 0.00 0.00 33.49 2.85
3029 5245 8.429641 TCAAACTATTTCTCAACCTGTAGAAGT 58.570 33.333 0.00 0.00 33.49 3.01
3030 5246 8.499162 CAAACTATTTCTCAACCTGTAGAAGTG 58.501 37.037 0.00 0.00 33.49 3.16
3031 5247 7.540474 ACTATTTCTCAACCTGTAGAAGTGA 57.460 36.000 0.00 0.00 33.49 3.41
3032 5248 7.607250 ACTATTTCTCAACCTGTAGAAGTGAG 58.393 38.462 0.00 0.00 33.49 3.51
3033 5249 4.873746 TTCTCAACCTGTAGAAGTGAGG 57.126 45.455 0.00 0.00 0.00 3.86
3034 5250 3.165875 TCTCAACCTGTAGAAGTGAGGG 58.834 50.000 0.00 0.00 0.00 4.30
3035 5251 2.900546 CTCAACCTGTAGAAGTGAGGGT 59.099 50.000 0.00 0.00 0.00 4.34
3036 5252 3.314693 TCAACCTGTAGAAGTGAGGGTT 58.685 45.455 0.00 0.00 37.51 4.11
3037 5253 3.403038 CAACCTGTAGAAGTGAGGGTTG 58.597 50.000 8.01 8.01 44.55 3.77
3038 5254 1.978580 ACCTGTAGAAGTGAGGGTTGG 59.021 52.381 0.00 0.00 0.00 3.77
3039 5255 1.279271 CCTGTAGAAGTGAGGGTTGGG 59.721 57.143 0.00 0.00 0.00 4.12
3040 5256 2.257207 CTGTAGAAGTGAGGGTTGGGA 58.743 52.381 0.00 0.00 0.00 4.37
3041 5257 2.234908 CTGTAGAAGTGAGGGTTGGGAG 59.765 54.545 0.00 0.00 0.00 4.30
3042 5258 1.555533 GTAGAAGTGAGGGTTGGGAGG 59.444 57.143 0.00 0.00 0.00 4.30
3043 5259 0.842467 AGAAGTGAGGGTTGGGAGGG 60.842 60.000 0.00 0.00 0.00 4.30
3044 5260 0.840722 GAAGTGAGGGTTGGGAGGGA 60.841 60.000 0.00 0.00 0.00 4.20
3045 5261 0.402861 AAGTGAGGGTTGGGAGGGAA 60.403 55.000 0.00 0.00 0.00 3.97
3046 5262 0.402861 AGTGAGGGTTGGGAGGGAAA 60.403 55.000 0.00 0.00 0.00 3.13
3047 5263 0.481128 GTGAGGGTTGGGAGGGAAAA 59.519 55.000 0.00 0.00 0.00 2.29
3048 5264 0.481128 TGAGGGTTGGGAGGGAAAAC 59.519 55.000 0.00 0.00 0.00 2.43
3049 5265 0.778083 GAGGGTTGGGAGGGAAAACT 59.222 55.000 0.00 0.00 0.00 2.66
3050 5266 0.778083 AGGGTTGGGAGGGAAAACTC 59.222 55.000 0.00 0.00 36.76 3.01
3058 5274 4.533318 GGGAAAACTCCCCCAACC 57.467 61.111 0.00 0.00 44.18 3.77
3059 5275 1.229082 GGGAAAACTCCCCCAACCC 60.229 63.158 0.00 0.00 44.18 4.11
3060 5276 1.605451 GGAAAACTCCCCCAACCCG 60.605 63.158 0.00 0.00 0.00 5.28
3061 5277 2.203582 AAAACTCCCCCAACCCGC 60.204 61.111 0.00 0.00 0.00 6.13
3062 5278 2.987355 GAAAACTCCCCCAACCCGCA 62.987 60.000 0.00 0.00 0.00 5.69
3063 5279 3.802852 AAACTCCCCCAACCCGCAC 62.803 63.158 0.00 0.00 0.00 5.34
3065 5281 4.410400 CTCCCCCAACCCGCACTC 62.410 72.222 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.109365 CATTGCATCGCCGGACAAAA 60.109 50.000 5.05 0.00 0.00 2.44
1 2 0.957888 TCATTGCATCGCCGGACAAA 60.958 50.000 5.05 0.00 0.00 2.83
2 3 0.747644 ATCATTGCATCGCCGGACAA 60.748 50.000 5.05 0.60 0.00 3.18
3 4 1.153188 ATCATTGCATCGCCGGACA 60.153 52.632 5.05 0.00 0.00 4.02
4 5 1.159713 TCATCATTGCATCGCCGGAC 61.160 55.000 5.05 0.00 0.00 4.79
5 6 0.250424 ATCATCATTGCATCGCCGGA 60.250 50.000 5.05 0.00 0.00 5.14
6 7 1.129251 GTATCATCATTGCATCGCCGG 59.871 52.381 0.00 0.00 0.00 6.13
7 8 1.201845 CGTATCATCATTGCATCGCCG 60.202 52.381 0.00 0.00 0.00 6.46
8 9 1.129251 CCGTATCATCATTGCATCGCC 59.871 52.381 0.00 0.00 0.00 5.54
9 10 1.464687 GCCGTATCATCATTGCATCGC 60.465 52.381 0.00 0.00 0.00 4.58
10 11 2.071540 AGCCGTATCATCATTGCATCG 58.928 47.619 0.00 0.00 0.00 3.84
11 12 3.063180 GCTAGCCGTATCATCATTGCATC 59.937 47.826 2.29 0.00 0.00 3.91
12 13 3.005554 GCTAGCCGTATCATCATTGCAT 58.994 45.455 2.29 0.00 0.00 3.96
13 14 2.037641 AGCTAGCCGTATCATCATTGCA 59.962 45.455 12.13 0.00 0.00 4.08
14 15 2.414481 CAGCTAGCCGTATCATCATTGC 59.586 50.000 12.13 0.00 0.00 3.56
15 16 3.917988 TCAGCTAGCCGTATCATCATTG 58.082 45.455 12.13 0.00 0.00 2.82
16 17 4.221482 TGATCAGCTAGCCGTATCATCATT 59.779 41.667 12.13 0.00 0.00 2.57
17 18 3.766051 TGATCAGCTAGCCGTATCATCAT 59.234 43.478 12.13 0.00 0.00 2.45
18 19 3.157087 TGATCAGCTAGCCGTATCATCA 58.843 45.455 12.13 3.54 0.00 3.07
19 20 3.857549 TGATCAGCTAGCCGTATCATC 57.142 47.619 12.13 0.71 0.00 2.92
20 21 3.513119 ACATGATCAGCTAGCCGTATCAT 59.487 43.478 22.15 22.15 37.69 2.45
21 22 2.893489 ACATGATCAGCTAGCCGTATCA 59.107 45.455 20.28 20.28 0.00 2.15
22 23 3.584406 ACATGATCAGCTAGCCGTATC 57.416 47.619 12.13 12.29 0.00 2.24
23 24 4.060900 CAAACATGATCAGCTAGCCGTAT 58.939 43.478 12.13 2.07 0.00 3.06
24 25 3.118775 ACAAACATGATCAGCTAGCCGTA 60.119 43.478 12.13 0.00 0.00 4.02
25 26 2.283298 CAAACATGATCAGCTAGCCGT 58.717 47.619 12.13 0.00 0.00 5.68
26 27 2.283298 ACAAACATGATCAGCTAGCCG 58.717 47.619 12.13 0.00 0.00 5.52
27 28 4.446371 AGTACAAACATGATCAGCTAGCC 58.554 43.478 12.13 0.00 0.00 3.93
28 29 5.728898 GCAAGTACAAACATGATCAGCTAGC 60.729 44.000 6.62 6.62 0.00 3.42
29 30 5.352293 TGCAAGTACAAACATGATCAGCTAG 59.648 40.000 0.00 0.00 0.00 3.42
30 31 5.244755 TGCAAGTACAAACATGATCAGCTA 58.755 37.500 0.00 0.00 0.00 3.32
31 32 4.074259 TGCAAGTACAAACATGATCAGCT 58.926 39.130 0.00 0.00 0.00 4.24
32 33 4.424061 TGCAAGTACAAACATGATCAGC 57.576 40.909 0.00 0.00 0.00 4.26
33 34 7.085746 TCAAATGCAAGTACAAACATGATCAG 58.914 34.615 0.00 0.00 0.00 2.90
34 35 6.979465 TCAAATGCAAGTACAAACATGATCA 58.021 32.000 0.00 0.00 0.00 2.92
35 36 7.809331 TCTTCAAATGCAAGTACAAACATGATC 59.191 33.333 0.00 0.00 0.00 2.92
36 37 7.660112 TCTTCAAATGCAAGTACAAACATGAT 58.340 30.769 0.00 0.00 0.00 2.45
37 38 7.036996 TCTTCAAATGCAAGTACAAACATGA 57.963 32.000 0.00 0.00 0.00 3.07
38 39 6.129009 GCTCTTCAAATGCAAGTACAAACATG 60.129 38.462 0.00 0.00 0.00 3.21
39 40 5.922544 GCTCTTCAAATGCAAGTACAAACAT 59.077 36.000 0.00 0.00 0.00 2.71
40 41 5.280945 GCTCTTCAAATGCAAGTACAAACA 58.719 37.500 0.00 0.00 0.00 2.83
41 42 4.681483 GGCTCTTCAAATGCAAGTACAAAC 59.319 41.667 0.00 0.00 0.00 2.93
42 43 4.556501 CGGCTCTTCAAATGCAAGTACAAA 60.557 41.667 0.00 0.00 0.00 2.83
43 44 3.058293 CGGCTCTTCAAATGCAAGTACAA 60.058 43.478 0.00 0.00 0.00 2.41
44 45 2.483877 CGGCTCTTCAAATGCAAGTACA 59.516 45.455 0.00 0.00 0.00 2.90
45 46 2.159517 CCGGCTCTTCAAATGCAAGTAC 60.160 50.000 0.00 0.00 0.00 2.73
46 47 2.083774 CCGGCTCTTCAAATGCAAGTA 58.916 47.619 0.00 0.00 0.00 2.24
47 48 0.883833 CCGGCTCTTCAAATGCAAGT 59.116 50.000 0.00 0.00 0.00 3.16
48 49 1.167851 TCCGGCTCTTCAAATGCAAG 58.832 50.000 0.00 0.00 0.00 4.01
49 50 1.838112 ATCCGGCTCTTCAAATGCAA 58.162 45.000 0.00 0.00 0.00 4.08
50 51 1.838112 AATCCGGCTCTTCAAATGCA 58.162 45.000 0.00 0.00 0.00 3.96
51 52 2.094545 ACAAATCCGGCTCTTCAAATGC 60.095 45.455 0.00 0.00 0.00 3.56
52 53 3.855689 ACAAATCCGGCTCTTCAAATG 57.144 42.857 0.00 0.00 0.00 2.32
53 54 5.476945 ACTTAACAAATCCGGCTCTTCAAAT 59.523 36.000 0.00 0.00 0.00 2.32
54 55 4.825085 ACTTAACAAATCCGGCTCTTCAAA 59.175 37.500 0.00 0.00 0.00 2.69
55 56 4.215399 CACTTAACAAATCCGGCTCTTCAA 59.785 41.667 0.00 0.00 0.00 2.69
56 57 3.751175 CACTTAACAAATCCGGCTCTTCA 59.249 43.478 0.00 0.00 0.00 3.02
57 58 3.426292 GCACTTAACAAATCCGGCTCTTC 60.426 47.826 0.00 0.00 0.00 2.87
58 59 2.488153 GCACTTAACAAATCCGGCTCTT 59.512 45.455 0.00 0.00 0.00 2.85
59 60 2.084546 GCACTTAACAAATCCGGCTCT 58.915 47.619 0.00 0.00 0.00 4.09
60 61 1.202031 CGCACTTAACAAATCCGGCTC 60.202 52.381 0.00 0.00 0.00 4.70
61 62 0.802494 CGCACTTAACAAATCCGGCT 59.198 50.000 0.00 0.00 0.00 5.52
62 63 0.800012 TCGCACTTAACAAATCCGGC 59.200 50.000 0.00 0.00 0.00 6.13
63 64 2.285602 CGATCGCACTTAACAAATCCGG 60.286 50.000 0.26 0.00 0.00 5.14
64 65 2.347452 ACGATCGCACTTAACAAATCCG 59.653 45.455 16.60 0.00 0.00 4.18
65 66 4.802039 TCTACGATCGCACTTAACAAATCC 59.198 41.667 16.60 0.00 0.00 3.01
66 67 5.552104 CGTCTACGATCGCACTTAACAAATC 60.552 44.000 16.60 0.00 43.02 2.17
67 68 4.264614 CGTCTACGATCGCACTTAACAAAT 59.735 41.667 16.60 0.00 43.02 2.32
68 69 3.605056 CGTCTACGATCGCACTTAACAAA 59.395 43.478 16.60 0.00 43.02 2.83
69 70 3.165890 CGTCTACGATCGCACTTAACAA 58.834 45.455 16.60 0.00 43.02 2.83
70 71 2.777494 CGTCTACGATCGCACTTAACA 58.223 47.619 16.60 0.00 43.02 2.41
81 82 1.334243 GCAGGTTAGAGCGTCTACGAT 59.666 52.381 6.71 0.00 43.02 3.73
82 83 0.731417 GCAGGTTAGAGCGTCTACGA 59.269 55.000 6.71 0.00 43.02 3.43
83 84 0.733729 AGCAGGTTAGAGCGTCTACG 59.266 55.000 0.00 0.00 43.27 3.51
84 85 1.473278 ACAGCAGGTTAGAGCGTCTAC 59.527 52.381 0.00 0.00 35.48 2.59
85 86 1.835494 ACAGCAGGTTAGAGCGTCTA 58.165 50.000 0.00 0.00 35.48 2.59
86 87 1.835494 TACAGCAGGTTAGAGCGTCT 58.165 50.000 0.00 0.00 35.48 4.18
87 88 2.359531 AGATACAGCAGGTTAGAGCGTC 59.640 50.000 0.00 0.00 35.48 5.19
88 89 2.099921 CAGATACAGCAGGTTAGAGCGT 59.900 50.000 0.00 0.00 35.48 5.07
89 90 2.359214 TCAGATACAGCAGGTTAGAGCG 59.641 50.000 0.00 0.00 35.48 5.03
90 91 4.305769 CATCAGATACAGCAGGTTAGAGC 58.694 47.826 0.00 0.00 0.00 4.09
91 92 4.586421 TCCATCAGATACAGCAGGTTAGAG 59.414 45.833 0.00 0.00 0.00 2.43
92 93 4.546674 TCCATCAGATACAGCAGGTTAGA 58.453 43.478 0.00 0.00 0.00 2.10
93 94 4.944619 TCCATCAGATACAGCAGGTTAG 57.055 45.455 0.00 0.00 0.00 2.34
94 95 5.366477 TCAATCCATCAGATACAGCAGGTTA 59.634 40.000 0.00 0.00 33.66 2.85
95 96 4.164796 TCAATCCATCAGATACAGCAGGTT 59.835 41.667 0.00 0.00 33.66 3.50
96 97 3.713248 TCAATCCATCAGATACAGCAGGT 59.287 43.478 0.00 0.00 33.66 4.00
97 98 4.063689 GTCAATCCATCAGATACAGCAGG 58.936 47.826 0.00 0.00 33.66 4.85
98 99 4.700700 TGTCAATCCATCAGATACAGCAG 58.299 43.478 0.00 0.00 33.66 4.24
99 100 4.443881 CCTGTCAATCCATCAGATACAGCA 60.444 45.833 3.92 0.00 39.06 4.41
100 101 4.063689 CCTGTCAATCCATCAGATACAGC 58.936 47.826 3.92 0.00 39.06 4.40
101 102 4.063689 GCCTGTCAATCCATCAGATACAG 58.936 47.826 2.76 2.76 39.67 2.74
102 103 3.493176 CGCCTGTCAATCCATCAGATACA 60.493 47.826 0.00 0.00 33.66 2.29
103 104 3.062763 CGCCTGTCAATCCATCAGATAC 58.937 50.000 0.00 0.00 33.66 2.24
104 105 2.037641 CCGCCTGTCAATCCATCAGATA 59.962 50.000 0.00 0.00 33.66 1.98
105 106 1.202734 CCGCCTGTCAATCCATCAGAT 60.203 52.381 0.00 0.00 36.48 2.90
106 107 0.178767 CCGCCTGTCAATCCATCAGA 59.821 55.000 0.00 0.00 0.00 3.27
107 108 1.442526 GCCGCCTGTCAATCCATCAG 61.443 60.000 0.00 0.00 0.00 2.90
108 109 1.451927 GCCGCCTGTCAATCCATCA 60.452 57.895 0.00 0.00 0.00 3.07
109 110 2.189499 GGCCGCCTGTCAATCCATC 61.189 63.158 0.71 0.00 0.00 3.51
110 111 2.124151 GGCCGCCTGTCAATCCAT 60.124 61.111 0.71 0.00 0.00 3.41
111 112 2.891941 GATGGCCGCCTGTCAATCCA 62.892 60.000 11.61 0.00 0.00 3.41
112 113 2.124151 ATGGCCGCCTGTCAATCC 60.124 61.111 11.61 0.00 0.00 3.01
113 114 2.537560 CGATGGCCGCCTGTCAATC 61.538 63.158 11.61 3.80 0.00 2.67
114 115 2.514592 CGATGGCCGCCTGTCAAT 60.515 61.111 11.61 0.00 0.00 2.57
115 116 4.776322 CCGATGGCCGCCTGTCAA 62.776 66.667 11.61 0.00 36.84 3.18
125 126 4.864334 CTGGCCTGGACCGATGGC 62.864 72.222 3.32 12.83 45.42 4.40
126 127 3.402681 ACTGGCCTGGACCGATGG 61.403 66.667 14.82 0.00 0.00 3.51
127 128 2.124983 CACTGGCCTGGACCGATG 60.125 66.667 14.82 0.00 0.00 3.84
128 129 2.607750 ACACTGGCCTGGACCGAT 60.608 61.111 14.82 0.00 0.00 4.18
129 130 3.625897 CACACTGGCCTGGACCGA 61.626 66.667 14.82 0.00 0.00 4.69
130 131 4.704833 CCACACTGGCCTGGACCG 62.705 72.222 14.82 0.00 0.00 4.79
131 132 2.185310 CTACCACACTGGCCTGGACC 62.185 65.000 15.38 0.00 42.67 4.46
132 133 1.296715 CTACCACACTGGCCTGGAC 59.703 63.158 15.38 0.00 42.67 4.02
133 134 0.115547 TACTACCACACTGGCCTGGA 59.884 55.000 15.38 0.00 42.67 3.86
134 135 1.134401 CATACTACCACACTGGCCTGG 60.134 57.143 14.82 10.94 42.67 4.45
135 136 1.134401 CCATACTACCACACTGGCCTG 60.134 57.143 8.29 8.29 42.67 4.85
136 137 1.204146 CCATACTACCACACTGGCCT 58.796 55.000 3.32 0.00 42.67 5.19
137 138 0.909623 ACCATACTACCACACTGGCC 59.090 55.000 0.00 0.00 42.67 5.36
138 139 1.406887 CCACCATACTACCACACTGGC 60.407 57.143 0.00 0.00 42.67 4.85
139 140 1.209504 CCCACCATACTACCACACTGG 59.790 57.143 0.00 0.00 45.02 4.00
140 141 1.209504 CCCCACCATACTACCACACTG 59.790 57.143 0.00 0.00 0.00 3.66
141 142 1.203389 ACCCCACCATACTACCACACT 60.203 52.381 0.00 0.00 0.00 3.55
142 143 1.282382 ACCCCACCATACTACCACAC 58.718 55.000 0.00 0.00 0.00 3.82
143 144 1.910671 GAACCCCACCATACTACCACA 59.089 52.381 0.00 0.00 0.00 4.17
144 145 1.910671 TGAACCCCACCATACTACCAC 59.089 52.381 0.00 0.00 0.00 4.16
145 146 2.345782 TGAACCCCACCATACTACCA 57.654 50.000 0.00 0.00 0.00 3.25
146 147 3.724732 TTTGAACCCCACCATACTACC 57.275 47.619 0.00 0.00 0.00 3.18
147 148 6.838382 AGATATTTGAACCCCACCATACTAC 58.162 40.000 0.00 0.00 0.00 2.73
148 149 7.287061 CAAGATATTTGAACCCCACCATACTA 58.713 38.462 0.00 0.00 0.00 1.82
149 150 5.994416 AGATATTTGAACCCCACCATACT 57.006 39.130 0.00 0.00 0.00 2.12
150 151 5.301805 CCAAGATATTTGAACCCCACCATAC 59.698 44.000 0.84 0.00 0.00 2.39
151 152 5.043732 ACCAAGATATTTGAACCCCACCATA 60.044 40.000 0.84 0.00 0.00 2.74
152 153 4.264804 ACCAAGATATTTGAACCCCACCAT 60.265 41.667 0.84 0.00 0.00 3.55
153 154 3.076785 ACCAAGATATTTGAACCCCACCA 59.923 43.478 0.84 0.00 0.00 4.17
154 155 3.708451 ACCAAGATATTTGAACCCCACC 58.292 45.455 0.84 0.00 0.00 4.61
155 156 5.738619 AAACCAAGATATTTGAACCCCAC 57.261 39.130 0.84 0.00 0.00 4.61
156 157 5.717654 GGTAAACCAAGATATTTGAACCCCA 59.282 40.000 0.00 0.00 35.64 4.96
157 158 5.955959 AGGTAAACCAAGATATTTGAACCCC 59.044 40.000 1.26 0.00 38.89 4.95
158 159 6.436218 ACAGGTAAACCAAGATATTTGAACCC 59.564 38.462 1.26 0.00 38.89 4.11
159 160 7.312899 CACAGGTAAACCAAGATATTTGAACC 58.687 38.462 1.26 0.00 38.89 3.62
160 161 6.806739 GCACAGGTAAACCAAGATATTTGAAC 59.193 38.462 1.26 0.00 38.89 3.18
161 162 6.071616 GGCACAGGTAAACCAAGATATTTGAA 60.072 38.462 1.26 0.00 38.89 2.69
162 163 5.417580 GGCACAGGTAAACCAAGATATTTGA 59.582 40.000 1.26 0.00 38.89 2.69
163 164 5.650543 GGCACAGGTAAACCAAGATATTTG 58.349 41.667 1.26 0.00 38.89 2.32
906 908 3.614092 AGCAATGAAATCTCCATCACGT 58.386 40.909 0.00 0.00 0.00 4.49
978 987 3.654414 AGAGTCCTTAAGTTTGAGTGCG 58.346 45.455 0.97 0.00 0.00 5.34
981 990 8.816894 TCAATCATAGAGTCCTTAAGTTTGAGT 58.183 33.333 0.97 0.00 0.00 3.41
1163 1172 5.336134 CCACAAATCAAGCACAGATCAATGA 60.336 40.000 0.00 0.00 0.00 2.57
1169 1178 1.200716 CGCCACAAATCAAGCACAGAT 59.799 47.619 0.00 0.00 0.00 2.90
1178 1187 4.200838 TCATCTTCTACGCCACAAATCA 57.799 40.909 0.00 0.00 0.00 2.57
1204 1213 5.195940 ACAGCTTACCAGTGCATGAAATAT 58.804 37.500 0.00 0.00 0.00 1.28
1440 1449 6.013379 TCCAGTAATTCTGAATGAACCTCACT 60.013 38.462 3.22 0.00 46.27 3.41
1534 1543 9.542462 TCGCATATCATTAGTAAAACTTAAGCT 57.458 29.630 1.29 0.00 0.00 3.74
1964 1973 6.823689 GGACCTATTATCAAAGCTGAACTTCA 59.176 38.462 0.00 0.00 37.75 3.02
2079 2088 7.750655 TGCCATATTTTTCTTTAAAACCCCTT 58.249 30.769 0.00 0.00 38.48 3.95
2092 2101 5.582689 AGTACTGGCTTGCCATATTTTTC 57.417 39.130 15.21 2.68 0.00 2.29
2100 2109 1.001974 CACACTAGTACTGGCTTGCCA 59.998 52.381 14.10 14.10 0.00 4.92
2101 2110 1.726853 CACACTAGTACTGGCTTGCC 58.273 55.000 5.39 4.43 0.00 4.52
2102 2111 1.079503 GCACACTAGTACTGGCTTGC 58.920 55.000 14.38 14.38 0.00 4.01
2103 2112 2.455674 TGCACACTAGTACTGGCTTG 57.544 50.000 5.39 4.50 0.00 4.01
2104 2113 2.936993 GCATGCACACTAGTACTGGCTT 60.937 50.000 14.21 0.00 0.00 4.35
2105 2114 1.406069 GCATGCACACTAGTACTGGCT 60.406 52.381 14.21 0.00 0.00 4.75
2106 2115 1.009829 GCATGCACACTAGTACTGGC 58.990 55.000 14.21 2.22 0.00 4.85
2107 2116 1.208052 AGGCATGCACACTAGTACTGG 59.792 52.381 21.36 4.89 0.00 4.00
2108 2117 2.680312 AGGCATGCACACTAGTACTG 57.320 50.000 21.36 0.00 0.00 2.74
2109 2118 2.099263 CGTAGGCATGCACACTAGTACT 59.901 50.000 21.36 6.29 0.00 2.73
2110 2119 2.460918 CGTAGGCATGCACACTAGTAC 58.539 52.381 21.36 7.67 0.00 2.73
2111 2120 1.407618 CCGTAGGCATGCACACTAGTA 59.592 52.381 21.36 0.00 46.14 1.82
2112 2121 0.175760 CCGTAGGCATGCACACTAGT 59.824 55.000 21.36 0.00 46.14 2.57
2113 2122 2.977700 CCGTAGGCATGCACACTAG 58.022 57.895 21.36 6.71 46.14 2.57
2141 2150 3.254629 GCTCACATGGAAAGCCTCA 57.745 52.632 0.00 0.00 34.31 3.86
2176 2185 2.159366 CCTTAACTGCGACTCGACTCAT 60.159 50.000 1.63 0.00 0.00 2.90
2177 2186 1.199327 CCTTAACTGCGACTCGACTCA 59.801 52.381 1.63 0.00 0.00 3.41
2178 2187 1.467734 TCCTTAACTGCGACTCGACTC 59.532 52.381 1.63 0.00 0.00 3.36
2179 2188 1.531423 TCCTTAACTGCGACTCGACT 58.469 50.000 1.63 0.00 0.00 4.18
2180 2189 1.984297 GTTCCTTAACTGCGACTCGAC 59.016 52.381 1.63 0.00 32.54 4.20
2181 2190 1.884579 AGTTCCTTAACTGCGACTCGA 59.115 47.619 1.63 0.00 44.40 4.04
2182 2191 2.349297 AGTTCCTTAACTGCGACTCG 57.651 50.000 0.00 0.00 44.40 4.18
2231 2240 5.062308 GCCGGCAAGAGTTTATATCTATTCG 59.938 44.000 24.80 0.00 0.00 3.34
2233 2242 4.929808 CGCCGGCAAGAGTTTATATCTATT 59.070 41.667 28.98 0.00 0.00 1.73
2313 2322 3.355270 CGATCGTAGATCGGATATGTGC 58.645 50.000 20.74 0.00 45.12 4.57
2343 2352 1.719063 AACATGTGGGCTGGACCTGT 61.719 55.000 0.00 0.00 39.10 4.00
2348 2357 2.910319 AGTAACTAACATGTGGGCTGGA 59.090 45.455 0.00 0.00 0.00 3.86
2379 2388 0.179056 ACACCGGTCACTTCCAACTG 60.179 55.000 2.59 0.00 0.00 3.16
2380 2389 0.179056 CACACCGGTCACTTCCAACT 60.179 55.000 2.59 0.00 0.00 3.16
2381 2390 0.463116 ACACACCGGTCACTTCCAAC 60.463 55.000 2.59 0.00 0.00 3.77
2391 2400 0.808453 CTTGACGTTCACACACCGGT 60.808 55.000 0.00 0.00 0.00 5.28
2412 2421 3.589988 CTCCTTTGCTCTTGTCGTATGT 58.410 45.455 0.00 0.00 0.00 2.29
2450 2459 2.351210 CCGCCGCGTACGTACTAC 60.351 66.667 22.55 13.69 37.70 2.73
2544 2553 1.464023 CGAAAAGCGTCGACGTAGGTA 60.464 52.381 35.48 0.00 43.86 3.08
2547 2556 1.978697 CCGAAAAGCGTCGACGTAG 59.021 57.895 35.48 17.81 43.86 3.51
2559 2568 1.466950 CGATGTTAGCCTTGCCGAAAA 59.533 47.619 0.00 0.00 0.00 2.29
2572 2581 6.765512 TCTGGTGCAATCAATAATCGATGTTA 59.234 34.615 0.00 0.00 0.00 2.41
2583 2592 3.058016 CACGTCTTTCTGGTGCAATCAAT 60.058 43.478 0.00 0.00 0.00 2.57
2611 2620 1.607801 GCATCTGGTCCCTTTTGGCC 61.608 60.000 0.00 0.00 38.58 5.36
2617 2626 2.670148 GGTCGGCATCTGGTCCCTT 61.670 63.158 0.00 0.00 0.00 3.95
2654 2663 3.067106 GGTACGTATGGATCCAGCATTG 58.933 50.000 21.33 10.27 0.00 2.82
2672 2681 9.512435 CGTAAAACGTACTAGTACTACTAGGTA 57.488 37.037 26.36 12.13 43.21 3.08
2754 4970 2.746279 TCCCACTCAGCTTCCAAAAA 57.254 45.000 0.00 0.00 0.00 1.94
2755 4971 2.174639 TCTTCCCACTCAGCTTCCAAAA 59.825 45.455 0.00 0.00 0.00 2.44
2756 4972 1.774254 TCTTCCCACTCAGCTTCCAAA 59.226 47.619 0.00 0.00 0.00 3.28
2757 4973 1.434188 TCTTCCCACTCAGCTTCCAA 58.566 50.000 0.00 0.00 0.00 3.53
2758 4974 1.349026 CTTCTTCCCACTCAGCTTCCA 59.651 52.381 0.00 0.00 0.00 3.53
2759 4975 1.625818 TCTTCTTCCCACTCAGCTTCC 59.374 52.381 0.00 0.00 0.00 3.46
2760 4976 2.301583 ACTCTTCTTCCCACTCAGCTTC 59.698 50.000 0.00 0.00 0.00 3.86
2769 4985 1.704628 TGATGCCAACTCTTCTTCCCA 59.295 47.619 0.00 0.00 0.00 4.37
2821 5037 1.344438 ACAACGATTGCCAGTCTCAGA 59.656 47.619 0.00 0.00 0.00 3.27
2822 5038 1.462283 CACAACGATTGCCAGTCTCAG 59.538 52.381 0.00 0.00 0.00 3.35
2826 5042 0.605319 TCCCACAACGATTGCCAGTC 60.605 55.000 0.00 0.00 0.00 3.51
2855 5071 2.833582 CTCTAAGGCCGGCGGAGA 60.834 66.667 33.44 22.01 0.00 3.71
2856 5072 4.593864 GCTCTAAGGCCGGCGGAG 62.594 72.222 33.44 23.19 0.00 4.63
2860 5076 0.464554 AGAATTGCTCTAAGGCCGGC 60.465 55.000 21.18 21.18 30.22 6.13
2862 5078 3.460857 ACTAGAATTGCTCTAAGGCCG 57.539 47.619 0.00 0.00 36.17 6.13
2863 5079 5.536916 TCTCTACTAGAATTGCTCTAAGGCC 59.463 44.000 0.00 0.00 36.17 5.19
2864 5080 6.443792 GTCTCTACTAGAATTGCTCTAAGGC 58.556 44.000 0.00 0.00 36.17 4.35
2865 5081 6.775629 AGGTCTCTACTAGAATTGCTCTAAGG 59.224 42.308 0.00 0.00 36.17 2.69
2866 5082 7.500892 TGAGGTCTCTACTAGAATTGCTCTAAG 59.499 40.741 0.00 0.00 36.17 2.18
2867 5083 7.347252 TGAGGTCTCTACTAGAATTGCTCTAA 58.653 38.462 0.00 0.00 36.17 2.10
2868 5084 6.901300 TGAGGTCTCTACTAGAATTGCTCTA 58.099 40.000 0.00 0.00 35.47 2.43
2869 5085 5.761205 TGAGGTCTCTACTAGAATTGCTCT 58.239 41.667 0.00 0.00 35.47 4.09
2870 5086 6.458232 TTGAGGTCTCTACTAGAATTGCTC 57.542 41.667 0.00 0.00 35.47 4.26
2871 5087 5.163457 GCTTGAGGTCTCTACTAGAATTGCT 60.163 44.000 0.00 0.00 35.47 3.91
2872 5088 5.047188 GCTTGAGGTCTCTACTAGAATTGC 58.953 45.833 0.00 0.00 35.47 3.56
2873 5089 5.452636 GGGCTTGAGGTCTCTACTAGAATTG 60.453 48.000 0.00 0.00 35.47 2.32
2874 5090 4.651962 GGGCTTGAGGTCTCTACTAGAATT 59.348 45.833 0.00 0.00 35.47 2.17
2875 5091 4.078863 AGGGCTTGAGGTCTCTACTAGAAT 60.079 45.833 0.00 0.00 35.47 2.40
2876 5092 3.269906 AGGGCTTGAGGTCTCTACTAGAA 59.730 47.826 0.00 0.00 35.47 2.10
2877 5093 2.853707 AGGGCTTGAGGTCTCTACTAGA 59.146 50.000 0.00 0.00 0.00 2.43
2878 5094 3.219281 GAGGGCTTGAGGTCTCTACTAG 58.781 54.545 0.00 0.00 0.00 2.57
2879 5095 2.581246 TGAGGGCTTGAGGTCTCTACTA 59.419 50.000 0.00 0.00 0.00 1.82
2880 5096 1.359474 TGAGGGCTTGAGGTCTCTACT 59.641 52.381 0.00 0.00 0.00 2.57
2881 5097 1.853963 TGAGGGCTTGAGGTCTCTAC 58.146 55.000 0.00 0.00 0.00 2.59
2882 5098 2.567615 GTTTGAGGGCTTGAGGTCTCTA 59.432 50.000 0.00 0.00 0.00 2.43
2883 5099 1.349357 GTTTGAGGGCTTGAGGTCTCT 59.651 52.381 0.00 0.00 0.00 3.10
2884 5100 1.611936 GGTTTGAGGGCTTGAGGTCTC 60.612 57.143 0.00 0.00 0.00 3.36
2885 5101 0.402121 GGTTTGAGGGCTTGAGGTCT 59.598 55.000 0.00 0.00 0.00 3.85
2886 5102 0.609406 GGGTTTGAGGGCTTGAGGTC 60.609 60.000 0.00 0.00 0.00 3.85
2887 5103 1.068352 AGGGTTTGAGGGCTTGAGGT 61.068 55.000 0.00 0.00 0.00 3.85
2888 5104 0.113190 AAGGGTTTGAGGGCTTGAGG 59.887 55.000 0.00 0.00 0.00 3.86
2889 5105 2.879103 TAAGGGTTTGAGGGCTTGAG 57.121 50.000 0.00 0.00 0.00 3.02
2890 5106 3.603965 TTTAAGGGTTTGAGGGCTTGA 57.396 42.857 0.00 0.00 0.00 3.02
2891 5107 4.681074 TTTTTAAGGGTTTGAGGGCTTG 57.319 40.909 0.00 0.00 0.00 4.01
2892 5108 6.557253 AGTTATTTTTAAGGGTTTGAGGGCTT 59.443 34.615 0.00 0.00 0.00 4.35
2893 5109 6.014584 CAGTTATTTTTAAGGGTTTGAGGGCT 60.015 38.462 0.00 0.00 0.00 5.19
2894 5110 6.163476 CAGTTATTTTTAAGGGTTTGAGGGC 58.837 40.000 0.00 0.00 0.00 5.19
2895 5111 7.297936 ACAGTTATTTTTAAGGGTTTGAGGG 57.702 36.000 0.00 0.00 0.00 4.30
2896 5112 9.607988 AAAACAGTTATTTTTAAGGGTTTGAGG 57.392 29.630 0.00 0.00 0.00 3.86
2943 5159 9.212641 GGGTTTAAAAGTTCTAGTCTACGATTT 57.787 33.333 0.00 0.00 0.00 2.17
2944 5160 8.591940 AGGGTTTAAAAGTTCTAGTCTACGATT 58.408 33.333 0.00 0.00 0.00 3.34
2945 5161 8.131847 AGGGTTTAAAAGTTCTAGTCTACGAT 57.868 34.615 0.00 0.00 0.00 3.73
2946 5162 7.530426 AGGGTTTAAAAGTTCTAGTCTACGA 57.470 36.000 0.00 0.00 0.00 3.43
2947 5163 9.696917 TTAAGGGTTTAAAAGTTCTAGTCTACG 57.303 33.333 0.00 0.00 0.00 3.51
2952 5168 9.006839 CGGATTTAAGGGTTTAAAAGTTCTAGT 57.993 33.333 0.00 0.00 40.91 2.57
2953 5169 9.006839 ACGGATTTAAGGGTTTAAAAGTTCTAG 57.993 33.333 0.00 0.00 40.91 2.43
2954 5170 8.922931 ACGGATTTAAGGGTTTAAAAGTTCTA 57.077 30.769 0.00 0.00 40.91 2.10
2955 5171 7.828508 ACGGATTTAAGGGTTTAAAAGTTCT 57.171 32.000 0.00 0.00 40.91 3.01
2956 5172 9.964303 TTTACGGATTTAAGGGTTTAAAAGTTC 57.036 29.630 0.00 0.00 40.91 3.01
2992 5208 4.354087 AGAAATAGTTTGAGGGTTGGACCT 59.646 41.667 0.00 0.00 45.57 3.85
2993 5209 4.663334 AGAAATAGTTTGAGGGTTGGACC 58.337 43.478 0.00 0.00 37.60 4.46
2994 5210 5.313712 TGAGAAATAGTTTGAGGGTTGGAC 58.686 41.667 0.00 0.00 0.00 4.02
2995 5211 5.576563 TGAGAAATAGTTTGAGGGTTGGA 57.423 39.130 0.00 0.00 0.00 3.53
2996 5212 5.048013 GGTTGAGAAATAGTTTGAGGGTTGG 60.048 44.000 0.00 0.00 0.00 3.77
2997 5213 5.770162 AGGTTGAGAAATAGTTTGAGGGTTG 59.230 40.000 0.00 0.00 0.00 3.77
2998 5214 5.770162 CAGGTTGAGAAATAGTTTGAGGGTT 59.230 40.000 0.00 0.00 0.00 4.11
2999 5215 5.163088 ACAGGTTGAGAAATAGTTTGAGGGT 60.163 40.000 0.00 0.00 0.00 4.34
3000 5216 5.316987 ACAGGTTGAGAAATAGTTTGAGGG 58.683 41.667 0.00 0.00 0.00 4.30
3001 5217 7.386851 TCTACAGGTTGAGAAATAGTTTGAGG 58.613 38.462 0.00 0.00 0.00 3.86
3002 5218 8.833231 TTCTACAGGTTGAGAAATAGTTTGAG 57.167 34.615 0.00 0.00 0.00 3.02
3003 5219 8.429641 ACTTCTACAGGTTGAGAAATAGTTTGA 58.570 33.333 0.00 0.00 31.46 2.69
3004 5220 8.499162 CACTTCTACAGGTTGAGAAATAGTTTG 58.501 37.037 0.00 0.00 31.46 2.93
3005 5221 8.429641 TCACTTCTACAGGTTGAGAAATAGTTT 58.570 33.333 0.00 0.00 31.46 2.66
3006 5222 7.963532 TCACTTCTACAGGTTGAGAAATAGTT 58.036 34.615 0.00 0.00 31.46 2.24
3007 5223 7.310113 CCTCACTTCTACAGGTTGAGAAATAGT 60.310 40.741 0.00 0.00 31.46 2.12
3008 5224 7.038659 CCTCACTTCTACAGGTTGAGAAATAG 58.961 42.308 0.00 0.00 31.46 1.73
3009 5225 6.070767 CCCTCACTTCTACAGGTTGAGAAATA 60.071 42.308 0.00 0.00 31.46 1.40
3010 5226 5.280215 CCCTCACTTCTACAGGTTGAGAAAT 60.280 44.000 0.00 0.00 31.46 2.17
3011 5227 4.040461 CCCTCACTTCTACAGGTTGAGAAA 59.960 45.833 0.00 0.00 31.46 2.52
3012 5228 3.578716 CCCTCACTTCTACAGGTTGAGAA 59.421 47.826 0.00 0.00 0.00 2.87
3013 5229 3.165875 CCCTCACTTCTACAGGTTGAGA 58.834 50.000 0.00 0.00 0.00 3.27
3014 5230 2.900546 ACCCTCACTTCTACAGGTTGAG 59.099 50.000 0.00 0.00 0.00 3.02
3015 5231 2.972348 ACCCTCACTTCTACAGGTTGA 58.028 47.619 0.00 0.00 0.00 3.18
3016 5232 3.403038 CAACCCTCACTTCTACAGGTTG 58.597 50.000 5.42 5.42 45.76 3.77
3017 5233 2.372172 CCAACCCTCACTTCTACAGGTT 59.628 50.000 0.00 0.00 38.10 3.50
3018 5234 1.978580 CCAACCCTCACTTCTACAGGT 59.021 52.381 0.00 0.00 0.00 4.00
3019 5235 1.279271 CCCAACCCTCACTTCTACAGG 59.721 57.143 0.00 0.00 0.00 4.00
3020 5236 2.234908 CTCCCAACCCTCACTTCTACAG 59.765 54.545 0.00 0.00 0.00 2.74
3021 5237 2.257207 CTCCCAACCCTCACTTCTACA 58.743 52.381 0.00 0.00 0.00 2.74
3022 5238 1.555533 CCTCCCAACCCTCACTTCTAC 59.444 57.143 0.00 0.00 0.00 2.59
3023 5239 1.554822 CCCTCCCAACCCTCACTTCTA 60.555 57.143 0.00 0.00 0.00 2.10
3024 5240 0.842467 CCCTCCCAACCCTCACTTCT 60.842 60.000 0.00 0.00 0.00 2.85
3025 5241 0.840722 TCCCTCCCAACCCTCACTTC 60.841 60.000 0.00 0.00 0.00 3.01
3026 5242 0.402861 TTCCCTCCCAACCCTCACTT 60.403 55.000 0.00 0.00 0.00 3.16
3027 5243 0.402861 TTTCCCTCCCAACCCTCACT 60.403 55.000 0.00 0.00 0.00 3.41
3028 5244 0.481128 TTTTCCCTCCCAACCCTCAC 59.519 55.000 0.00 0.00 0.00 3.51
3029 5245 0.481128 GTTTTCCCTCCCAACCCTCA 59.519 55.000 0.00 0.00 0.00 3.86
3030 5246 0.778083 AGTTTTCCCTCCCAACCCTC 59.222 55.000 0.00 0.00 0.00 4.30
3031 5247 0.778083 GAGTTTTCCCTCCCAACCCT 59.222 55.000 0.00 0.00 0.00 4.34
3032 5248 0.251653 GGAGTTTTCCCTCCCAACCC 60.252 60.000 0.00 0.00 44.49 4.11
3033 5249 3.358554 GGAGTTTTCCCTCCCAACC 57.641 57.895 0.00 0.00 44.49 3.77
3042 5258 1.605451 CGGGTTGGGGGAGTTTTCC 60.605 63.158 0.00 0.00 43.23 3.13
3043 5259 2.273179 GCGGGTTGGGGGAGTTTTC 61.273 63.158 0.00 0.00 0.00 2.29
3044 5260 2.203582 GCGGGTTGGGGGAGTTTT 60.204 61.111 0.00 0.00 0.00 2.43
3045 5261 3.503839 TGCGGGTTGGGGGAGTTT 61.504 61.111 0.00 0.00 0.00 2.66
3046 5262 4.280019 GTGCGGGTTGGGGGAGTT 62.280 66.667 0.00 0.00 0.00 3.01
3048 5264 4.410400 GAGTGCGGGTTGGGGGAG 62.410 72.222 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.