Multiple sequence alignment - TraesCS2B01G397400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G397400 chr2B 100.000 4271 0 0 1 4271 564227703 564231973 0.000000e+00 7888.0
1 TraesCS2B01G397400 chr2A 97.302 3410 87 3 867 4271 623937356 623940765 0.000000e+00 5782.0
2 TraesCS2B01G397400 chr2A 90.308 454 42 2 415 866 67978875 67979328 1.020000e-165 593.0
3 TraesCS2B01G397400 chr2D 97.245 3412 82 5 866 4271 481047550 481050955 0.000000e+00 5770.0
4 TraesCS2B01G397400 chr2D 90.576 191 18 0 1 191 481047205 481047395 1.970000e-63 254.0
5 TraesCS2B01G397400 chr2D 85.207 169 21 3 250 417 481047398 481047563 2.040000e-38 171.0
6 TraesCS2B01G397400 chr3B 95.186 457 20 2 413 867 44665816 44665360 0.000000e+00 721.0
7 TraesCS2B01G397400 chr3B 94.092 457 24 3 415 869 51099072 51098617 0.000000e+00 691.0
8 TraesCS2B01G397400 chr3B 95.157 413 19 1 455 866 163684859 163684447 0.000000e+00 651.0
9 TraesCS2B01G397400 chr5B 94.989 459 16 4 415 866 545613688 545613230 0.000000e+00 713.0
10 TraesCS2B01G397400 chr5B 92.070 454 34 2 415 866 54118173 54117720 4.660000e-179 638.0
11 TraesCS2B01G397400 chr6B 94.079 456 23 4 415 867 581291332 581290878 0.000000e+00 689.0
12 TraesCS2B01G397400 chrUn 92.291 454 32 3 414 866 339519558 339520009 3.600000e-180 641.0
13 TraesCS2B01G397400 chrUn 77.500 240 35 17 51 282 287538086 287537858 4.480000e-25 126.0
14 TraesCS2B01G397400 chrUn 77.500 240 35 17 51 282 287544207 287543979 4.480000e-25 126.0
15 TraesCS2B01G397400 chrUn 77.500 240 35 17 51 282 389434828 389435056 4.480000e-25 126.0
16 TraesCS2B01G397400 chr7A 89.035 456 47 3 414 867 91533478 91533024 2.880000e-156 562.0
17 TraesCS2B01G397400 chr3D 78.333 120 24 1 73 190 572631552 572631433 4.580000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G397400 chr2B 564227703 564231973 4270 False 7888 7888 100.000000 1 4271 1 chr2B.!!$F1 4270
1 TraesCS2B01G397400 chr2A 623937356 623940765 3409 False 5782 5782 97.302000 867 4271 1 chr2A.!!$F2 3404
2 TraesCS2B01G397400 chr2D 481047205 481050955 3750 False 2065 5770 91.009333 1 4271 3 chr2D.!!$F1 4270

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
238 239 0.033699 AGGAAGCTGGAGGATTTGGC 60.034 55.0 0.00 0.00 0.00 4.52 F
559 560 0.097150 GCCAAACTAGCTAGCGTTGC 59.903 55.0 23.31 16.86 0.00 4.17 F
738 739 0.097150 GCAACGCTAGCTAGTTTGGC 59.903 55.0 25.95 19.52 0.00 4.52 F
1351 1352 0.108377 ATCTGTTATCGCGGCACACA 60.108 50.0 6.13 3.65 0.00 3.72 F
1893 1894 0.514691 GCAAGAAGTTGGAGTCTGCG 59.485 55.0 0.00 0.00 33.87 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1555 0.176680 AGCCGCTCTTGGAGTACATG 59.823 55.000 0.00 0.0 31.39 3.21 R
2119 2120 0.336048 ACATCCCCATCCAAACCCAG 59.664 55.000 0.00 0.0 0.00 4.45 R
2502 2503 3.256558 GCCCATCATTTCAAAGTGCTTC 58.743 45.455 0.00 0.0 0.00 3.86 R
2610 2611 3.593328 TGATCCCCAAGTTTCTCATCCTT 59.407 43.478 0.00 0.0 0.00 3.36 R
3701 3704 1.696336 AGGAAGAGCTTCTCACTGCAA 59.304 47.619 9.82 0.0 39.45 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.899239 CGGTGCGGATGGAGCTCC 62.899 72.222 26.78 26.78 42.82 4.70
77 78 2.281484 GGGCTCGCTTTGTGTGGA 60.281 61.111 0.00 0.00 0.00 4.02
125 126 1.079875 TATGCCCGCGACGTTCTTTC 61.080 55.000 8.23 0.00 0.00 2.62
153 154 2.915137 TGGCCGAAAAGGGGTTGC 60.915 61.111 0.00 0.00 41.48 4.17
159 160 4.279043 AAAAGGGGTTGCGCGCAC 62.279 61.111 36.72 27.03 0.00 5.34
191 192 2.046285 CGGAGTGGGTGGATTTGGC 61.046 63.158 0.00 0.00 0.00 4.52
193 194 0.681243 GGAGTGGGTGGATTTGGCTC 60.681 60.000 0.00 0.00 0.00 4.70
194 195 0.329596 GAGTGGGTGGATTTGGCTCT 59.670 55.000 0.00 0.00 0.00 4.09
195 196 0.038744 AGTGGGTGGATTTGGCTCTG 59.961 55.000 0.00 0.00 0.00 3.35
196 197 0.967380 GTGGGTGGATTTGGCTCTGG 60.967 60.000 0.00 0.00 0.00 3.86
197 198 1.139498 TGGGTGGATTTGGCTCTGGA 61.139 55.000 0.00 0.00 0.00 3.86
198 199 0.394899 GGGTGGATTTGGCTCTGGAG 60.395 60.000 0.00 0.00 0.00 3.86
199 200 0.620556 GGTGGATTTGGCTCTGGAGA 59.379 55.000 1.35 0.00 0.00 3.71
200 201 1.407989 GGTGGATTTGGCTCTGGAGAG 60.408 57.143 1.35 0.00 44.75 3.20
201 202 1.556911 GTGGATTTGGCTCTGGAGAGA 59.443 52.381 7.89 0.00 44.74 3.10
212 213 2.756907 TCTGGAGAGAGAGGGGAATTG 58.243 52.381 0.00 0.00 0.00 2.32
213 214 1.140652 CTGGAGAGAGAGGGGAATTGC 59.859 57.143 0.00 0.00 0.00 3.56
214 215 1.207791 GGAGAGAGAGGGGAATTGCA 58.792 55.000 0.00 0.00 0.00 4.08
215 216 1.140652 GGAGAGAGAGGGGAATTGCAG 59.859 57.143 0.00 0.00 0.00 4.41
216 217 0.545646 AGAGAGAGGGGAATTGCAGC 59.454 55.000 0.00 0.00 0.00 5.25
217 218 0.813210 GAGAGAGGGGAATTGCAGCG 60.813 60.000 0.00 0.00 0.00 5.18
218 219 1.821332 GAGAGGGGAATTGCAGCGG 60.821 63.158 0.00 0.00 0.00 5.52
219 220 2.257409 GAGAGGGGAATTGCAGCGGA 62.257 60.000 0.00 0.00 0.00 5.54
220 221 1.821332 GAGGGGAATTGCAGCGGAG 60.821 63.158 0.00 0.00 0.00 4.63
221 222 2.830370 GGGGAATTGCAGCGGAGG 60.830 66.667 0.00 0.00 0.00 4.30
222 223 2.272146 GGGAATTGCAGCGGAGGA 59.728 61.111 0.00 0.00 0.00 3.71
223 224 1.378514 GGGAATTGCAGCGGAGGAA 60.379 57.895 0.00 0.00 0.00 3.36
224 225 1.379642 GGGAATTGCAGCGGAGGAAG 61.380 60.000 0.00 0.00 0.00 3.46
225 226 1.431036 GAATTGCAGCGGAGGAAGC 59.569 57.895 0.00 0.00 0.00 3.86
231 232 3.080121 AGCGGAGGAAGCTGGAGG 61.080 66.667 0.00 0.00 44.22 4.30
232 233 3.077556 GCGGAGGAAGCTGGAGGA 61.078 66.667 0.00 0.00 0.00 3.71
233 234 2.439104 GCGGAGGAAGCTGGAGGAT 61.439 63.158 0.00 0.00 0.00 3.24
234 235 1.977293 GCGGAGGAAGCTGGAGGATT 61.977 60.000 0.00 0.00 0.00 3.01
235 236 0.543749 CGGAGGAAGCTGGAGGATTT 59.456 55.000 0.00 0.00 0.00 2.17
236 237 1.745141 CGGAGGAAGCTGGAGGATTTG 60.745 57.143 0.00 0.00 0.00 2.32
237 238 1.409381 GGAGGAAGCTGGAGGATTTGG 60.409 57.143 0.00 0.00 0.00 3.28
238 239 0.033699 AGGAAGCTGGAGGATTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
239 240 1.379642 GGAAGCTGGAGGATTTGGCG 61.380 60.000 0.00 0.00 0.00 5.69
240 241 1.379044 AAGCTGGAGGATTTGGCGG 60.379 57.895 0.00 0.00 0.00 6.13
241 242 1.852157 AAGCTGGAGGATTTGGCGGA 61.852 55.000 0.00 0.00 0.00 5.54
242 243 1.152881 GCTGGAGGATTTGGCGGAT 60.153 57.895 0.00 0.00 0.00 4.18
243 244 0.108585 GCTGGAGGATTTGGCGGATA 59.891 55.000 0.00 0.00 0.00 2.59
244 245 1.271597 GCTGGAGGATTTGGCGGATAT 60.272 52.381 0.00 0.00 0.00 1.63
245 246 2.027192 GCTGGAGGATTTGGCGGATATA 60.027 50.000 0.00 0.00 0.00 0.86
246 247 3.866651 CTGGAGGATTTGGCGGATATAG 58.133 50.000 0.00 0.00 0.00 1.31
247 248 2.571653 TGGAGGATTTGGCGGATATAGG 59.428 50.000 0.00 0.00 0.00 2.57
248 249 2.838202 GGAGGATTTGGCGGATATAGGA 59.162 50.000 0.00 0.00 0.00 2.94
258 259 4.412858 TGGCGGATATAGGAAACCCTAAAA 59.587 41.667 0.00 0.00 39.57 1.52
268 269 2.512974 CCCTAAAACGCGCCGGAT 60.513 61.111 5.05 0.00 0.00 4.18
272 273 3.353770 TAAAACGCGCCGGATCCGA 62.354 57.895 35.42 9.16 42.83 4.55
282 283 3.490419 GCGCCGGATCCGATAAATATAGT 60.490 47.826 35.42 0.00 42.83 2.12
284 285 4.201980 CGCCGGATCCGATAAATATAGTGA 60.202 45.833 35.42 0.00 42.83 3.41
285 286 5.282510 GCCGGATCCGATAAATATAGTGAG 58.717 45.833 35.42 13.84 42.83 3.51
296 297 2.750141 TATAGTGAGGGAGCCGAGTT 57.250 50.000 0.00 0.00 0.00 3.01
316 317 4.709690 TTTTTGGGCCGGGTCTTT 57.290 50.000 2.18 0.00 0.00 2.52
384 385 2.825861 TCGGAATTATAAGGACGGGC 57.174 50.000 5.88 0.00 0.00 6.13
385 386 1.000060 TCGGAATTATAAGGACGGGCG 60.000 52.381 5.88 0.00 0.00 6.13
405 406 0.395586 AGGTCTGCGAGAGATGCTCT 60.396 55.000 0.00 0.00 44.28 4.09
406 407 0.248990 GGTCTGCGAGAGATGCTCTG 60.249 60.000 1.02 0.00 41.35 3.35
407 408 0.737804 GTCTGCGAGAGATGCTCTGA 59.262 55.000 1.02 0.00 41.35 3.27
408 409 1.337703 GTCTGCGAGAGATGCTCTGAT 59.662 52.381 1.02 0.00 41.35 2.90
409 410 1.337387 TCTGCGAGAGATGCTCTGATG 59.663 52.381 1.02 0.00 41.35 3.07
410 411 1.337387 CTGCGAGAGATGCTCTGATGA 59.663 52.381 1.02 0.00 41.35 2.92
411 412 1.962100 TGCGAGAGATGCTCTGATGAT 59.038 47.619 1.02 0.00 41.35 2.45
412 413 3.152341 TGCGAGAGATGCTCTGATGATA 58.848 45.455 1.02 0.00 41.35 2.15
413 414 3.057666 TGCGAGAGATGCTCTGATGATAC 60.058 47.826 1.02 0.00 41.35 2.24
414 415 3.746089 CGAGAGATGCTCTGATGATACG 58.254 50.000 1.02 0.00 41.35 3.06
415 416 3.426025 CGAGAGATGCTCTGATGATACGG 60.426 52.174 1.02 0.00 41.35 4.02
416 417 2.230992 AGAGATGCTCTGATGATACGGC 59.769 50.000 0.00 0.00 39.62 5.68
417 418 2.230992 GAGATGCTCTGATGATACGGCT 59.769 50.000 0.00 0.00 0.00 5.52
418 419 2.632028 AGATGCTCTGATGATACGGCTT 59.368 45.455 0.00 0.00 0.00 4.35
419 420 2.229675 TGCTCTGATGATACGGCTTG 57.770 50.000 0.00 0.00 0.00 4.01
420 421 1.482182 TGCTCTGATGATACGGCTTGT 59.518 47.619 0.00 0.00 0.00 3.16
421 422 2.093500 TGCTCTGATGATACGGCTTGTT 60.093 45.455 0.00 0.00 0.00 2.83
422 423 2.939103 GCTCTGATGATACGGCTTGTTT 59.061 45.455 0.00 0.00 0.00 2.83
423 424 3.001736 GCTCTGATGATACGGCTTGTTTC 59.998 47.826 0.00 0.00 0.00 2.78
424 425 4.183865 CTCTGATGATACGGCTTGTTTCA 58.816 43.478 5.57 5.57 41.75 2.69
425 426 3.932710 TCTGATGATACGGCTTGTTTCAC 59.067 43.478 5.30 2.46 40.61 3.18
426 427 3.935203 CTGATGATACGGCTTGTTTCACT 59.065 43.478 5.30 0.00 40.61 3.41
427 428 5.079689 TGATGATACGGCTTGTTTCACTA 57.920 39.130 5.30 0.00 40.61 2.74
428 429 5.670485 TGATGATACGGCTTGTTTCACTAT 58.330 37.500 5.30 0.00 40.61 2.12
429 430 6.112734 TGATGATACGGCTTGTTTCACTATT 58.887 36.000 5.30 0.00 40.61 1.73
430 431 6.597672 TGATGATACGGCTTGTTTCACTATTT 59.402 34.615 5.30 0.00 40.61 1.40
431 432 6.811253 TGATACGGCTTGTTTCACTATTTT 57.189 33.333 0.00 0.00 34.21 1.82
432 433 6.607689 TGATACGGCTTGTTTCACTATTTTG 58.392 36.000 0.00 0.00 34.21 2.44
433 434 6.428465 TGATACGGCTTGTTTCACTATTTTGA 59.572 34.615 0.00 0.00 34.21 2.69
434 435 4.855531 ACGGCTTGTTTCACTATTTTGAC 58.144 39.130 0.00 0.00 0.00 3.18
435 436 4.226761 CGGCTTGTTTCACTATTTTGACC 58.773 43.478 0.00 0.00 0.00 4.02
436 437 4.023193 CGGCTTGTTTCACTATTTTGACCT 60.023 41.667 0.00 0.00 0.00 3.85
437 438 5.507315 CGGCTTGTTTCACTATTTTGACCTT 60.507 40.000 0.00 0.00 0.00 3.50
438 439 6.280643 GGCTTGTTTCACTATTTTGACCTTT 58.719 36.000 0.00 0.00 0.00 3.11
439 440 6.420903 GGCTTGTTTCACTATTTTGACCTTTC 59.579 38.462 0.00 0.00 0.00 2.62
440 441 6.978080 GCTTGTTTCACTATTTTGACCTTTCA 59.022 34.615 0.00 0.00 0.00 2.69
441 442 7.168135 GCTTGTTTCACTATTTTGACCTTTCAG 59.832 37.037 0.00 0.00 31.71 3.02
442 443 7.873719 TGTTTCACTATTTTGACCTTTCAGA 57.126 32.000 0.00 0.00 31.71 3.27
443 444 8.287439 TGTTTCACTATTTTGACCTTTCAGAA 57.713 30.769 0.00 0.00 31.71 3.02
444 445 8.744652 TGTTTCACTATTTTGACCTTTCAGAAA 58.255 29.630 0.00 0.00 30.11 2.52
445 446 9.581099 GTTTCACTATTTTGACCTTTCAGAAAA 57.419 29.630 0.00 0.00 30.11 2.29
446 447 9.581099 TTTCACTATTTTGACCTTTCAGAAAAC 57.419 29.630 0.00 0.00 30.11 2.43
447 448 8.519799 TCACTATTTTGACCTTTCAGAAAACT 57.480 30.769 0.00 0.00 30.11 2.66
448 449 8.966868 TCACTATTTTGACCTTTCAGAAAACTT 58.033 29.630 0.00 0.00 30.11 2.66
449 450 9.586435 CACTATTTTGACCTTTCAGAAAACTTT 57.414 29.630 0.00 0.00 30.11 2.66
455 456 8.795842 TTGACCTTTCAGAAAACTTTAGTACA 57.204 30.769 0.00 0.00 31.71 2.90
456 457 8.795842 TGACCTTTCAGAAAACTTTAGTACAA 57.204 30.769 0.00 0.00 0.00 2.41
457 458 9.233649 TGACCTTTCAGAAAACTTTAGTACAAA 57.766 29.630 0.00 0.00 0.00 2.83
504 505 8.804688 TTCACAATTTGACCCTTTTAATAACG 57.195 30.769 2.79 0.00 32.26 3.18
505 506 6.864165 TCACAATTTGACCCTTTTAATAACGC 59.136 34.615 2.79 0.00 0.00 4.84
506 507 6.090223 CACAATTTGACCCTTTTAATAACGCC 59.910 38.462 2.79 0.00 0.00 5.68
507 508 5.986501 ATTTGACCCTTTTAATAACGCCA 57.013 34.783 0.00 0.00 0.00 5.69
508 509 4.769859 TTGACCCTTTTAATAACGCCAC 57.230 40.909 0.00 0.00 0.00 5.01
509 510 3.752665 TGACCCTTTTAATAACGCCACA 58.247 40.909 0.00 0.00 0.00 4.17
510 511 4.142790 TGACCCTTTTAATAACGCCACAA 58.857 39.130 0.00 0.00 0.00 3.33
511 512 4.216687 TGACCCTTTTAATAACGCCACAAG 59.783 41.667 0.00 0.00 0.00 3.16
512 513 3.057104 ACCCTTTTAATAACGCCACAAGC 60.057 43.478 0.00 0.00 38.52 4.01
513 514 3.507786 CCTTTTAATAACGCCACAAGCC 58.492 45.455 0.00 0.00 38.78 4.35
514 515 2.904011 TTTAATAACGCCACAAGCCG 57.096 45.000 0.00 0.00 38.78 5.52
515 516 1.810959 TTAATAACGCCACAAGCCGT 58.189 45.000 0.00 0.00 38.78 5.68
516 517 2.669300 TAATAACGCCACAAGCCGTA 57.331 45.000 0.00 0.00 38.78 4.02
517 518 1.365699 AATAACGCCACAAGCCGTAG 58.634 50.000 0.00 0.00 38.78 3.51
518 519 1.087771 ATAACGCCACAAGCCGTAGC 61.088 55.000 0.00 0.00 38.78 3.58
521 522 3.047877 GCCACAAGCCGTAGCGTT 61.048 61.111 0.00 0.00 46.67 4.84
522 523 2.613506 GCCACAAGCCGTAGCGTTT 61.614 57.895 0.00 0.00 46.67 3.60
523 524 1.495951 CCACAAGCCGTAGCGTTTC 59.504 57.895 0.00 0.00 46.67 2.78
524 525 0.949105 CCACAAGCCGTAGCGTTTCT 60.949 55.000 0.00 0.00 46.67 2.52
525 526 0.865769 CACAAGCCGTAGCGTTTCTT 59.134 50.000 0.00 0.00 46.67 2.52
526 527 1.136336 CACAAGCCGTAGCGTTTCTTC 60.136 52.381 0.00 0.00 46.67 2.87
527 528 1.270147 ACAAGCCGTAGCGTTTCTTCT 60.270 47.619 0.00 0.00 46.67 2.85
528 529 1.390463 CAAGCCGTAGCGTTTCTTCTC 59.610 52.381 0.00 0.00 46.67 2.87
529 530 0.889306 AGCCGTAGCGTTTCTTCTCT 59.111 50.000 0.00 0.00 46.67 3.10
530 531 2.089980 AGCCGTAGCGTTTCTTCTCTA 58.910 47.619 0.00 0.00 46.67 2.43
531 532 2.688958 AGCCGTAGCGTTTCTTCTCTAT 59.311 45.455 0.00 0.00 46.67 1.98
532 533 3.130693 AGCCGTAGCGTTTCTTCTCTATT 59.869 43.478 0.00 0.00 46.67 1.73
533 534 3.864003 GCCGTAGCGTTTCTTCTCTATTT 59.136 43.478 0.00 0.00 0.00 1.40
534 535 4.259850 GCCGTAGCGTTTCTTCTCTATTTG 60.260 45.833 0.00 0.00 0.00 2.32
535 536 4.267928 CCGTAGCGTTTCTTCTCTATTTGG 59.732 45.833 0.00 0.00 0.00 3.28
536 537 5.100259 CGTAGCGTTTCTTCTCTATTTGGA 58.900 41.667 0.00 0.00 0.00 3.53
537 538 5.575606 CGTAGCGTTTCTTCTCTATTTGGAA 59.424 40.000 0.00 0.00 0.00 3.53
538 539 6.090358 CGTAGCGTTTCTTCTCTATTTGGAAA 59.910 38.462 0.00 0.00 0.00 3.13
539 540 6.242508 AGCGTTTCTTCTCTATTTGGAAAC 57.757 37.500 0.00 0.00 40.98 2.78
542 543 5.391449 GTTTCTTCTCTATTTGGAAACGCC 58.609 41.667 0.00 0.00 37.23 5.68
551 552 3.717842 TGGAAACGCCAAACTAGCT 57.282 47.368 0.00 0.00 45.87 3.32
552 553 2.843401 TGGAAACGCCAAACTAGCTA 57.157 45.000 0.00 0.00 45.87 3.32
553 554 2.695359 TGGAAACGCCAAACTAGCTAG 58.305 47.619 19.44 19.44 45.87 3.42
554 555 1.397343 GGAAACGCCAAACTAGCTAGC 59.603 52.381 20.91 6.62 36.34 3.42
556 557 4.496670 CGCCAAACTAGCTAGCGT 57.503 55.556 20.91 6.18 41.78 5.07
557 558 2.750815 CGCCAAACTAGCTAGCGTT 58.249 52.632 20.91 12.14 41.78 4.84
558 559 0.370273 CGCCAAACTAGCTAGCGTTG 59.630 55.000 20.91 21.80 41.78 4.10
559 560 0.097150 GCCAAACTAGCTAGCGTTGC 59.903 55.000 23.31 16.86 0.00 4.17
560 561 1.726853 CCAAACTAGCTAGCGTTGCT 58.273 50.000 23.31 3.43 43.41 3.91
561 562 2.076863 CCAAACTAGCTAGCGTTGCTT 58.923 47.619 23.31 8.66 40.44 3.91
562 563 2.094417 CCAAACTAGCTAGCGTTGCTTC 59.906 50.000 23.31 0.00 40.44 3.86
563 564 2.736721 CAAACTAGCTAGCGTTGCTTCA 59.263 45.455 20.91 0.00 40.44 3.02
564 565 1.997669 ACTAGCTAGCGTTGCTTCAC 58.002 50.000 20.91 0.00 40.44 3.18
565 566 1.546476 ACTAGCTAGCGTTGCTTCACT 59.454 47.619 20.91 0.00 40.44 3.41
566 567 2.028930 ACTAGCTAGCGTTGCTTCACTT 60.029 45.455 20.91 0.00 40.44 3.16
567 568 1.433534 AGCTAGCGTTGCTTCACTTC 58.566 50.000 9.55 0.00 40.44 3.01
568 569 1.148310 GCTAGCGTTGCTTCACTTCA 58.852 50.000 0.00 0.00 40.44 3.02
569 570 1.734465 GCTAGCGTTGCTTCACTTCAT 59.266 47.619 0.00 0.00 40.44 2.57
570 571 2.930040 GCTAGCGTTGCTTCACTTCATA 59.070 45.455 0.00 0.00 40.44 2.15
571 572 3.370978 GCTAGCGTTGCTTCACTTCATAA 59.629 43.478 0.00 0.00 40.44 1.90
572 573 4.142902 GCTAGCGTTGCTTCACTTCATAAA 60.143 41.667 0.00 0.00 40.44 1.40
573 574 5.447818 GCTAGCGTTGCTTCACTTCATAAAT 60.448 40.000 0.00 0.00 40.44 1.40
574 575 6.238103 GCTAGCGTTGCTTCACTTCATAAATA 60.238 38.462 0.00 0.00 40.44 1.40
575 576 6.494893 AGCGTTGCTTCACTTCATAAATAA 57.505 33.333 0.00 0.00 33.89 1.40
576 577 6.908825 AGCGTTGCTTCACTTCATAAATAAA 58.091 32.000 0.00 0.00 33.89 1.40
577 578 7.538575 AGCGTTGCTTCACTTCATAAATAAAT 58.461 30.769 0.00 0.00 33.89 1.40
578 579 7.485913 AGCGTTGCTTCACTTCATAAATAAATG 59.514 33.333 0.00 0.00 33.89 2.32
579 580 7.484641 GCGTTGCTTCACTTCATAAATAAATGA 59.515 33.333 0.00 0.00 34.07 2.57
580 581 9.340695 CGTTGCTTCACTTCATAAATAAATGAA 57.659 29.630 0.00 0.00 42.21 2.57
605 606 8.515473 AAAATATGAAAAGTTAGGTGAAACGC 57.485 30.769 0.00 0.00 38.12 4.84
606 607 3.974871 TGAAAAGTTAGGTGAAACGCC 57.025 42.857 0.00 0.00 38.12 5.68
607 608 3.280295 TGAAAAGTTAGGTGAAACGCCA 58.720 40.909 4.21 0.00 38.12 5.69
608 609 3.695060 TGAAAAGTTAGGTGAAACGCCAA 59.305 39.130 4.21 0.00 38.12 4.52
609 610 3.703286 AAAGTTAGGTGAAACGCCAAC 57.297 42.857 4.21 6.40 38.12 3.77
610 611 1.601166 AGTTAGGTGAAACGCCAACC 58.399 50.000 4.21 0.00 38.12 3.77
611 612 1.134037 AGTTAGGTGAAACGCCAACCA 60.134 47.619 4.21 0.00 38.12 3.67
612 613 1.883926 GTTAGGTGAAACGCCAACCAT 59.116 47.619 4.21 0.00 38.12 3.55
613 614 1.816074 TAGGTGAAACGCCAACCATC 58.184 50.000 4.21 0.00 38.12 3.51
614 615 0.893727 AGGTGAAACGCCAACCATCC 60.894 55.000 4.21 0.00 38.12 3.51
615 616 0.893727 GGTGAAACGCCAACCATCCT 60.894 55.000 0.00 0.00 38.12 3.24
616 617 0.958822 GTGAAACGCCAACCATCCTT 59.041 50.000 0.00 0.00 0.00 3.36
617 618 0.958091 TGAAACGCCAACCATCCTTG 59.042 50.000 0.00 0.00 0.00 3.61
626 627 3.607163 CCATCCTTGGCGTTGCAT 58.393 55.556 0.00 0.00 35.85 3.96
627 628 1.140161 CCATCCTTGGCGTTGCATG 59.860 57.895 0.00 0.00 35.85 4.06
628 629 1.517694 CATCCTTGGCGTTGCATGC 60.518 57.895 11.82 11.82 0.00 4.06
629 630 1.679977 ATCCTTGGCGTTGCATGCT 60.680 52.632 20.33 0.00 0.00 3.79
630 631 1.252904 ATCCTTGGCGTTGCATGCTT 61.253 50.000 20.33 0.00 0.00 3.91
631 632 1.735198 CCTTGGCGTTGCATGCTTG 60.735 57.895 20.33 9.55 0.00 4.01
632 633 1.735198 CTTGGCGTTGCATGCTTGG 60.735 57.895 20.33 8.60 0.00 3.61
633 634 3.223710 TTGGCGTTGCATGCTTGGG 62.224 57.895 20.33 6.74 0.00 4.12
651 652 3.902112 CAGCAACACCCACCCCCT 61.902 66.667 0.00 0.00 0.00 4.79
652 653 3.110031 AGCAACACCCACCCCCTT 61.110 61.111 0.00 0.00 0.00 3.95
653 654 2.917227 GCAACACCCACCCCCTTG 60.917 66.667 0.00 0.00 0.00 3.61
654 655 2.203625 CAACACCCACCCCCTTGG 60.204 66.667 0.00 0.00 41.37 3.61
655 656 4.233558 AACACCCACCCCCTTGGC 62.234 66.667 0.00 0.00 37.83 4.52
659 660 4.614036 CCCACCCCCTTGGCGTTT 62.614 66.667 0.00 0.00 37.83 3.60
660 661 2.989253 CCACCCCCTTGGCGTTTC 60.989 66.667 0.00 0.00 37.83 2.78
661 662 2.989253 CACCCCCTTGGCGTTTCC 60.989 66.667 0.00 0.00 37.83 3.13
662 663 3.503839 ACCCCCTTGGCGTTTCCA 61.504 61.111 0.00 0.00 44.85 3.53
673 674 3.314339 CGTTTCCAACAACGCAACA 57.686 47.368 0.00 0.00 42.81 3.33
674 675 1.618861 CGTTTCCAACAACGCAACAA 58.381 45.000 0.00 0.00 42.81 2.83
675 676 1.986378 CGTTTCCAACAACGCAACAAA 59.014 42.857 0.00 0.00 42.81 2.83
676 677 2.222398 CGTTTCCAACAACGCAACAAAC 60.222 45.455 0.00 0.00 42.81 2.93
677 678 2.990514 GTTTCCAACAACGCAACAAACT 59.009 40.909 0.00 0.00 0.00 2.66
678 679 3.305398 TTCCAACAACGCAACAAACTT 57.695 38.095 0.00 0.00 0.00 2.66
679 680 3.305398 TCCAACAACGCAACAAACTTT 57.695 38.095 0.00 0.00 0.00 2.66
680 681 2.989840 TCCAACAACGCAACAAACTTTG 59.010 40.909 0.00 0.00 0.00 2.77
681 682 2.093467 CCAACAACGCAACAAACTTTGG 59.907 45.455 6.47 0.00 34.12 3.28
682 683 1.355005 ACAACGCAACAAACTTTGGC 58.645 45.000 6.47 0.34 34.12 4.52
683 684 0.297230 CAACGCAACAAACTTTGGCG 59.703 50.000 18.08 18.08 34.38 5.69
684 685 0.109039 AACGCAACAAACTTTGGCGT 60.109 45.000 19.07 19.07 39.34 5.68
685 686 0.109039 ACGCAACAAACTTTGGCGTT 60.109 45.000 19.07 8.63 36.50 4.84
686 687 0.995728 CGCAACAAACTTTGGCGTTT 59.004 45.000 13.78 0.00 37.58 3.60
687 688 1.391826 CGCAACAAACTTTGGCGTTTT 59.608 42.857 13.78 0.00 35.06 2.43
688 689 2.599082 CGCAACAAACTTTGGCGTTTTA 59.401 40.909 13.78 0.00 35.06 1.52
689 690 3.301515 CGCAACAAACTTTGGCGTTTTAG 60.302 43.478 13.78 0.00 35.06 1.85
690 691 3.543265 GCAACAAACTTTGGCGTTTTAGC 60.543 43.478 6.47 0.00 35.06 3.09
699 700 1.495951 GCGTTTTAGCCCTGTCACG 59.504 57.895 0.00 0.00 0.00 4.35
700 701 1.226030 GCGTTTTAGCCCTGTCACGT 61.226 55.000 0.00 0.00 0.00 4.49
701 702 1.936203 GCGTTTTAGCCCTGTCACGTA 60.936 52.381 0.00 0.00 0.00 3.57
702 703 1.990563 CGTTTTAGCCCTGTCACGTAG 59.009 52.381 0.00 0.00 0.00 3.51
703 704 1.730612 GTTTTAGCCCTGTCACGTAGC 59.269 52.381 0.00 0.00 0.00 3.58
704 705 0.970640 TTTAGCCCTGTCACGTAGCA 59.029 50.000 0.00 0.00 0.00 3.49
705 706 1.191535 TTAGCCCTGTCACGTAGCAT 58.808 50.000 0.00 0.00 0.00 3.79
706 707 0.744874 TAGCCCTGTCACGTAGCATC 59.255 55.000 0.00 0.00 0.00 3.91
707 708 0.972983 AGCCCTGTCACGTAGCATCT 60.973 55.000 0.00 0.00 0.00 2.90
708 709 0.528684 GCCCTGTCACGTAGCATCTC 60.529 60.000 0.00 0.00 0.00 2.75
709 710 0.248661 CCCTGTCACGTAGCATCTCG 60.249 60.000 0.00 0.00 0.00 4.04
710 711 0.733150 CCTGTCACGTAGCATCTCGA 59.267 55.000 0.00 0.00 0.00 4.04
711 712 1.335182 CCTGTCACGTAGCATCTCGAT 59.665 52.381 0.00 0.00 0.00 3.59
712 713 2.603412 CCTGTCACGTAGCATCTCGATC 60.603 54.545 0.00 0.00 0.00 3.69
713 714 2.014128 TGTCACGTAGCATCTCGATCA 58.986 47.619 0.00 0.00 0.00 2.92
714 715 2.032178 TGTCACGTAGCATCTCGATCAG 59.968 50.000 0.00 0.00 0.00 2.90
715 716 1.604278 TCACGTAGCATCTCGATCAGG 59.396 52.381 0.00 0.00 0.00 3.86
716 717 0.312416 ACGTAGCATCTCGATCAGGC 59.688 55.000 0.00 0.00 0.00 4.85
717 718 0.387878 CGTAGCATCTCGATCAGGCC 60.388 60.000 0.00 0.00 0.00 5.19
718 719 0.676184 GTAGCATCTCGATCAGGCCA 59.324 55.000 5.01 0.00 0.00 5.36
719 720 0.964700 TAGCATCTCGATCAGGCCAG 59.035 55.000 5.01 0.00 0.00 4.85
720 721 1.960250 GCATCTCGATCAGGCCAGC 60.960 63.158 5.01 0.00 0.00 4.85
721 722 1.444672 CATCTCGATCAGGCCAGCA 59.555 57.895 5.01 0.00 0.00 4.41
722 723 0.179065 CATCTCGATCAGGCCAGCAA 60.179 55.000 5.01 0.00 0.00 3.91
723 724 0.179062 ATCTCGATCAGGCCAGCAAC 60.179 55.000 5.01 0.00 0.00 4.17
724 725 2.125552 TCGATCAGGCCAGCAACG 60.126 61.111 5.01 4.15 0.00 4.10
725 726 3.869272 CGATCAGGCCAGCAACGC 61.869 66.667 5.01 0.00 0.00 4.84
726 727 2.437359 GATCAGGCCAGCAACGCT 60.437 61.111 5.01 0.00 40.77 5.07
727 728 1.153369 GATCAGGCCAGCAACGCTA 60.153 57.895 5.01 0.00 36.40 4.26
728 729 1.153289 ATCAGGCCAGCAACGCTAG 60.153 57.895 5.01 0.00 36.40 3.42
729 730 3.503363 CAGGCCAGCAACGCTAGC 61.503 66.667 5.01 4.06 42.18 3.42
730 731 3.710722 AGGCCAGCAACGCTAGCT 61.711 61.111 13.93 0.00 42.50 3.32
731 732 2.186903 GGCCAGCAACGCTAGCTA 59.813 61.111 13.93 0.00 42.50 3.32
732 733 1.884926 GGCCAGCAACGCTAGCTAG 60.885 63.158 16.84 16.84 42.50 3.42
733 734 1.153549 GCCAGCAACGCTAGCTAGT 60.154 57.895 21.62 0.65 39.96 2.57
734 735 0.741221 GCCAGCAACGCTAGCTAGTT 60.741 55.000 21.62 7.68 39.96 2.24
735 736 1.726853 CCAGCAACGCTAGCTAGTTT 58.273 50.000 21.62 12.43 41.14 2.66
736 737 1.394917 CCAGCAACGCTAGCTAGTTTG 59.605 52.381 21.62 22.47 41.14 2.93
737 738 1.394917 CAGCAACGCTAGCTAGTTTGG 59.605 52.381 25.95 15.80 41.14 3.28
738 739 0.097150 GCAACGCTAGCTAGTTTGGC 59.903 55.000 25.95 19.52 0.00 4.52
740 741 4.496670 CGCTAGCTAGTTTGGCGT 57.503 55.556 21.62 0.00 40.78 5.68
741 742 2.750815 CGCTAGCTAGTTTGGCGTT 58.249 52.632 21.62 0.00 40.78 4.84
742 743 1.076332 CGCTAGCTAGTTTGGCGTTT 58.924 50.000 21.62 0.00 40.78 3.60
743 744 1.463444 CGCTAGCTAGTTTGGCGTTTT 59.537 47.619 21.62 0.00 40.78 2.43
744 745 2.474032 CGCTAGCTAGTTTGGCGTTTTC 60.474 50.000 21.62 0.00 40.78 2.29
745 746 2.482721 GCTAGCTAGTTTGGCGTTTTCA 59.517 45.455 21.62 0.00 34.52 2.69
746 747 3.127030 GCTAGCTAGTTTGGCGTTTTCAT 59.873 43.478 21.62 0.00 34.52 2.57
747 748 4.331717 GCTAGCTAGTTTGGCGTTTTCATA 59.668 41.667 21.62 0.00 34.52 2.15
748 749 5.007724 GCTAGCTAGTTTGGCGTTTTCATAT 59.992 40.000 21.62 0.00 34.52 1.78
749 750 6.202188 GCTAGCTAGTTTGGCGTTTTCATATA 59.798 38.462 21.62 0.00 34.52 0.86
750 751 6.604735 AGCTAGTTTGGCGTTTTCATATAG 57.395 37.500 0.00 0.00 34.52 1.31
751 752 5.007724 AGCTAGTTTGGCGTTTTCATATAGC 59.992 40.000 0.00 0.00 33.75 2.97
752 753 4.273005 AGTTTGGCGTTTTCATATAGCG 57.727 40.909 0.00 0.00 0.00 4.26
753 754 3.936453 AGTTTGGCGTTTTCATATAGCGA 59.064 39.130 0.00 0.00 0.00 4.93
754 755 4.034048 AGTTTGGCGTTTTCATATAGCGAG 59.966 41.667 0.00 0.00 0.00 5.03
755 756 1.864711 TGGCGTTTTCATATAGCGAGC 59.135 47.619 0.00 0.00 0.00 5.03
756 757 1.864711 GGCGTTTTCATATAGCGAGCA 59.135 47.619 0.00 0.00 0.00 4.26
757 758 2.286833 GGCGTTTTCATATAGCGAGCAA 59.713 45.455 0.00 0.00 0.00 3.91
758 759 3.280775 GCGTTTTCATATAGCGAGCAAC 58.719 45.455 0.00 0.00 0.00 4.17
759 760 3.522362 CGTTTTCATATAGCGAGCAACG 58.478 45.455 0.00 0.00 45.66 4.10
769 770 3.064324 GAGCAACGCCATGGCCTT 61.064 61.111 30.79 22.32 37.98 4.35
770 771 2.601367 AGCAACGCCATGGCCTTT 60.601 55.556 30.79 20.66 37.98 3.11
771 772 2.432972 GCAACGCCATGGCCTTTG 60.433 61.111 29.47 29.47 37.98 2.77
772 773 2.262292 CAACGCCATGGCCTTTGG 59.738 61.111 30.79 18.45 37.98 3.28
783 784 3.957383 GCCTTTGGCGTTTCTGAAA 57.043 47.368 0.00 0.00 39.62 2.69
784 785 2.217429 GCCTTTGGCGTTTCTGAAAA 57.783 45.000 4.09 0.00 39.62 2.29
785 786 2.545731 GCCTTTGGCGTTTCTGAAAAA 58.454 42.857 4.09 0.00 39.62 1.94
786 787 2.539688 GCCTTTGGCGTTTCTGAAAAAG 59.460 45.455 4.09 4.69 39.62 2.27
787 788 3.736740 GCCTTTGGCGTTTCTGAAAAAGA 60.737 43.478 4.09 0.00 39.62 2.52
788 789 4.620982 CCTTTGGCGTTTCTGAAAAAGAT 58.379 39.130 4.09 0.00 33.93 2.40
789 790 4.681483 CCTTTGGCGTTTCTGAAAAAGATC 59.319 41.667 4.09 0.00 33.93 2.75
790 791 4.909696 TTGGCGTTTCTGAAAAAGATCA 57.090 36.364 4.09 2.80 33.93 2.92
791 792 4.488126 TGGCGTTTCTGAAAAAGATCAG 57.512 40.909 4.09 0.00 46.62 2.90
805 806 9.820725 TGAAAAAGATCAGATTGTGAAATTGTT 57.179 25.926 0.00 0.00 39.19 2.83
809 810 9.603921 AAAGATCAGATTGTGAAATTGTTTTGT 57.396 25.926 0.00 0.00 39.19 2.83
810 811 8.583810 AGATCAGATTGTGAAATTGTTTTGTG 57.416 30.769 0.00 0.00 39.19 3.33
811 812 8.199449 AGATCAGATTGTGAAATTGTTTTGTGT 58.801 29.630 0.00 0.00 39.19 3.72
812 813 7.522901 TCAGATTGTGAAATTGTTTTGTGTG 57.477 32.000 0.00 0.00 29.64 3.82
813 814 6.534436 TCAGATTGTGAAATTGTTTTGTGTGG 59.466 34.615 0.00 0.00 29.64 4.17
814 815 6.534436 CAGATTGTGAAATTGTTTTGTGTGGA 59.466 34.615 0.00 0.00 0.00 4.02
815 816 6.757947 AGATTGTGAAATTGTTTTGTGTGGAG 59.242 34.615 0.00 0.00 0.00 3.86
816 817 5.398603 TGTGAAATTGTTTTGTGTGGAGT 57.601 34.783 0.00 0.00 0.00 3.85
817 818 5.788450 TGTGAAATTGTTTTGTGTGGAGTT 58.212 33.333 0.00 0.00 0.00 3.01
818 819 5.866633 TGTGAAATTGTTTTGTGTGGAGTTC 59.133 36.000 0.00 0.00 0.00 3.01
819 820 5.866633 GTGAAATTGTTTTGTGTGGAGTTCA 59.133 36.000 0.00 0.00 0.00 3.18
820 821 6.534793 GTGAAATTGTTTTGTGTGGAGTTCAT 59.465 34.615 0.00 0.00 0.00 2.57
821 822 7.064490 GTGAAATTGTTTTGTGTGGAGTTCATT 59.936 33.333 0.00 0.00 0.00 2.57
822 823 7.605691 TGAAATTGTTTTGTGTGGAGTTCATTT 59.394 29.630 0.00 0.00 0.00 2.32
823 824 7.920160 AATTGTTTTGTGTGGAGTTCATTTT 57.080 28.000 0.00 0.00 0.00 1.82
824 825 6.718454 TTGTTTTGTGTGGAGTTCATTTTG 57.282 33.333 0.00 0.00 0.00 2.44
825 826 5.788450 TGTTTTGTGTGGAGTTCATTTTGT 58.212 33.333 0.00 0.00 0.00 2.83
826 827 5.636965 TGTTTTGTGTGGAGTTCATTTTGTG 59.363 36.000 0.00 0.00 0.00 3.33
827 828 3.435105 TGTGTGGAGTTCATTTTGTGC 57.565 42.857 0.00 0.00 0.00 4.57
828 829 3.023119 TGTGTGGAGTTCATTTTGTGCT 58.977 40.909 0.00 0.00 0.00 4.40
829 830 4.203226 TGTGTGGAGTTCATTTTGTGCTA 58.797 39.130 0.00 0.00 0.00 3.49
830 831 4.642437 TGTGTGGAGTTCATTTTGTGCTAA 59.358 37.500 0.00 0.00 0.00 3.09
831 832 5.126222 TGTGTGGAGTTCATTTTGTGCTAAA 59.874 36.000 0.00 0.00 0.00 1.85
832 833 5.687285 GTGTGGAGTTCATTTTGTGCTAAAG 59.313 40.000 0.00 0.00 0.00 1.85
833 834 5.359576 TGTGGAGTTCATTTTGTGCTAAAGT 59.640 36.000 0.00 0.00 0.00 2.66
834 835 6.127479 TGTGGAGTTCATTTTGTGCTAAAGTT 60.127 34.615 0.00 0.00 0.00 2.66
835 836 6.756542 GTGGAGTTCATTTTGTGCTAAAGTTT 59.243 34.615 0.00 0.00 0.00 2.66
836 837 6.978080 TGGAGTTCATTTTGTGCTAAAGTTTC 59.022 34.615 0.00 0.00 0.00 2.78
837 838 6.420903 GGAGTTCATTTTGTGCTAAAGTTTCC 59.579 38.462 0.00 0.00 0.00 3.13
838 839 7.112452 AGTTCATTTTGTGCTAAAGTTTCCT 57.888 32.000 0.00 0.00 0.00 3.36
839 840 7.203218 AGTTCATTTTGTGCTAAAGTTTCCTC 58.797 34.615 0.00 0.00 0.00 3.71
840 841 5.757886 TCATTTTGTGCTAAAGTTTCCTCG 58.242 37.500 0.00 0.00 0.00 4.63
841 842 5.298276 TCATTTTGTGCTAAAGTTTCCTCGT 59.702 36.000 0.00 0.00 0.00 4.18
842 843 6.483974 TCATTTTGTGCTAAAGTTTCCTCGTA 59.516 34.615 0.00 0.00 0.00 3.43
843 844 6.680874 TTTTGTGCTAAAGTTTCCTCGTAA 57.319 33.333 0.00 0.00 0.00 3.18
844 845 5.917541 TTGTGCTAAAGTTTCCTCGTAAG 57.082 39.130 0.00 0.00 0.00 2.34
845 846 4.312443 TGTGCTAAAGTTTCCTCGTAAGG 58.688 43.478 0.00 0.00 44.89 2.69
846 847 4.202284 TGTGCTAAAGTTTCCTCGTAAGGT 60.202 41.667 0.00 0.00 43.82 3.50
847 848 4.388165 GTGCTAAAGTTTCCTCGTAAGGTC 59.612 45.833 0.00 0.00 43.82 3.85
848 849 4.039488 TGCTAAAGTTTCCTCGTAAGGTCA 59.961 41.667 0.00 0.00 43.82 4.02
849 850 4.626172 GCTAAAGTTTCCTCGTAAGGTCAG 59.374 45.833 0.00 0.00 43.82 3.51
850 851 4.950205 AAAGTTTCCTCGTAAGGTCAGA 57.050 40.909 0.00 0.00 43.82 3.27
851 852 4.950205 AAGTTTCCTCGTAAGGTCAGAA 57.050 40.909 0.00 0.00 43.82 3.02
852 853 4.522722 AGTTTCCTCGTAAGGTCAGAAG 57.477 45.455 0.00 0.00 43.82 2.85
853 854 4.150359 AGTTTCCTCGTAAGGTCAGAAGA 58.850 43.478 0.00 0.00 43.82 2.87
854 855 4.218852 AGTTTCCTCGTAAGGTCAGAAGAG 59.781 45.833 0.00 0.00 43.82 2.85
855 856 3.436577 TCCTCGTAAGGTCAGAAGAGT 57.563 47.619 0.00 0.00 43.82 3.24
856 857 3.082548 TCCTCGTAAGGTCAGAAGAGTG 58.917 50.000 0.00 0.00 43.82 3.51
857 858 3.082548 CCTCGTAAGGTCAGAAGAGTGA 58.917 50.000 0.00 0.00 37.94 3.41
858 859 3.506455 CCTCGTAAGGTCAGAAGAGTGAA 59.494 47.826 0.00 0.00 37.94 3.18
859 860 4.022242 CCTCGTAAGGTCAGAAGAGTGAAA 60.022 45.833 0.00 0.00 37.94 2.69
860 861 5.509163 CCTCGTAAGGTCAGAAGAGTGAAAA 60.509 44.000 0.00 0.00 37.94 2.29
861 862 5.909477 TCGTAAGGTCAGAAGAGTGAAAAA 58.091 37.500 0.00 0.00 38.47 1.94
862 863 5.983720 TCGTAAGGTCAGAAGAGTGAAAAAG 59.016 40.000 0.00 0.00 38.47 2.27
863 864 5.177696 CGTAAGGTCAGAAGAGTGAAAAAGG 59.822 44.000 0.00 0.00 0.00 3.11
864 865 3.481453 AGGTCAGAAGAGTGAAAAAGGC 58.519 45.455 0.00 0.00 0.00 4.35
865 866 2.554462 GGTCAGAAGAGTGAAAAAGGCC 59.446 50.000 0.00 0.00 0.00 5.19
899 900 1.669265 ACATGTGCATTCATGAGCTCG 59.331 47.619 20.65 0.00 45.41 5.03
992 993 2.614057 CTCCAACTGCGAGTTCAAAACT 59.386 45.455 0.00 0.00 46.38 2.66
1075 1076 2.045926 CCCTCCACGCCTTCCAAG 60.046 66.667 0.00 0.00 0.00 3.61
1135 1136 4.201679 CATACGCCGCCCTCGTCA 62.202 66.667 0.00 0.00 40.89 4.35
1261 1262 1.834896 ACCTTATCACCATGTACGGCA 59.165 47.619 0.00 0.00 0.00 5.69
1351 1352 0.108377 ATCTGTTATCGCGGCACACA 60.108 50.000 6.13 3.65 0.00 3.72
1471 1472 4.704833 GCGCAGAGCTTGGGGACA 62.705 66.667 0.30 0.00 44.04 4.02
1473 1474 1.817099 CGCAGAGCTTGGGGACATC 60.817 63.158 0.00 0.00 42.32 3.06
1554 1555 2.551270 CAGAACGCGCTTGTCACC 59.449 61.111 5.73 0.00 0.00 4.02
1686 1687 2.475466 CGAAATGGAGGCGCTGCAT 61.475 57.895 7.64 7.72 44.11 3.96
1740 1741 5.395990 GCATCATCCCAATCAGTTCCATTTT 60.396 40.000 0.00 0.00 0.00 1.82
1755 1756 2.986479 CCATTTTGGAAGCGTGTTTAGC 59.014 45.455 0.00 0.00 40.96 3.09
1829 1830 7.101652 TGTCTGTGAAGTATAATCTGGACTC 57.898 40.000 0.00 0.00 0.00 3.36
1893 1894 0.514691 GCAAGAAGTTGGAGTCTGCG 59.485 55.000 0.00 0.00 33.87 5.18
1990 1991 3.707102 GGGTCTTCTTAGTGAGGCTATGT 59.293 47.826 0.00 0.00 0.00 2.29
2066 2067 0.591170 GGCTTGTTATGTGCGTGTGT 59.409 50.000 0.00 0.00 0.00 3.72
2119 2120 3.764237 TCCACTCCTACTTGGTCAAAC 57.236 47.619 0.00 0.00 37.07 2.93
2502 2503 2.938451 TGGAAGTTTAGATGATGCTGCG 59.062 45.455 0.00 0.00 0.00 5.18
2610 2611 6.100404 AGGAAAGCACTTGATTTATTTGCA 57.900 33.333 0.00 0.00 33.35 4.08
2628 2629 1.821136 GCAAGGATGAGAAACTTGGGG 59.179 52.381 0.00 0.00 41.33 4.96
3254 3255 7.814642 AGTGATTTGTCAGATGAAGAAATGAC 58.185 34.615 8.74 8.74 41.89 3.06
3319 3320 1.068948 TGGCCAACCTACCAAAGCTA 58.931 50.000 0.61 0.00 36.63 3.32
3464 3467 5.268387 TGCTTTTCCTTTGGCTTCCATATA 58.732 37.500 0.00 0.00 31.53 0.86
3534 3537 0.392729 CTGCTGAGGCCTGAAAGAGG 60.393 60.000 12.00 0.00 46.13 3.69
3601 3604 6.899393 ATGTGTTTGAATGACCACATAGTT 57.101 33.333 2.52 0.00 44.38 2.24
3609 3612 8.997621 TTGAATGACCACATAGTTCTACTAAC 57.002 34.615 0.00 0.00 33.89 2.34
3701 3704 7.741554 AGACCAGTCTCTTTTAATCTACCAT 57.258 36.000 0.00 0.00 34.17 3.55
3706 3709 7.201679 CCAGTCTCTTTTAATCTACCATTGCAG 60.202 40.741 0.00 0.00 0.00 4.41
3716 3719 1.818642 ACCATTGCAGTGAGAAGCTC 58.181 50.000 11.31 0.00 0.00 4.09
3883 3889 4.090761 CATGTAGTAGCAACATGGGGAT 57.909 45.455 8.06 0.00 46.78 3.85
4135 4142 7.298374 AGTTAGATTCTTCCTTTCTTTTGGGT 58.702 34.615 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.899239 GGAGCTCCATCCGCACCG 62.899 72.222 28.43 0.00 35.64 4.94
106 107 1.079681 AAAGAACGTCGCGGGCATA 60.080 52.632 6.13 0.00 0.00 3.14
115 116 1.389106 CCGGAATGTCGAAAGAACGTC 59.611 52.381 0.00 0.00 45.01 4.34
149 150 2.532811 GTTTTTCGTGCGCGCAAC 59.467 55.556 38.24 25.30 38.14 4.17
150 151 3.013990 CGTTTTTCGTGCGCGCAA 61.014 55.556 38.24 20.06 38.14 4.85
161 162 4.941309 ACTCCGGCGGCCGTTTTT 62.941 61.111 36.22 17.17 46.80 1.94
193 194 1.140652 GCAATTCCCCTCTCTCTCCAG 59.859 57.143 0.00 0.00 0.00 3.86
194 195 1.207791 GCAATTCCCCTCTCTCTCCA 58.792 55.000 0.00 0.00 0.00 3.86
195 196 1.140652 CTGCAATTCCCCTCTCTCTCC 59.859 57.143 0.00 0.00 0.00 3.71
196 197 1.474855 GCTGCAATTCCCCTCTCTCTC 60.475 57.143 0.00 0.00 0.00 3.20
197 198 0.545646 GCTGCAATTCCCCTCTCTCT 59.454 55.000 0.00 0.00 0.00 3.10
198 199 0.813210 CGCTGCAATTCCCCTCTCTC 60.813 60.000 0.00 0.00 0.00 3.20
199 200 1.222936 CGCTGCAATTCCCCTCTCT 59.777 57.895 0.00 0.00 0.00 3.10
200 201 1.821332 CCGCTGCAATTCCCCTCTC 60.821 63.158 0.00 0.00 0.00 3.20
201 202 2.262774 CTCCGCTGCAATTCCCCTCT 62.263 60.000 0.00 0.00 0.00 3.69
202 203 1.821332 CTCCGCTGCAATTCCCCTC 60.821 63.158 0.00 0.00 0.00 4.30
203 204 2.273449 CTCCGCTGCAATTCCCCT 59.727 61.111 0.00 0.00 0.00 4.79
204 205 2.830370 CCTCCGCTGCAATTCCCC 60.830 66.667 0.00 0.00 0.00 4.81
205 206 1.378514 TTCCTCCGCTGCAATTCCC 60.379 57.895 0.00 0.00 0.00 3.97
206 207 1.997928 GCTTCCTCCGCTGCAATTCC 61.998 60.000 0.00 0.00 0.00 3.01
207 208 1.028868 AGCTTCCTCCGCTGCAATTC 61.029 55.000 0.00 0.00 36.15 2.17
208 209 1.001641 AGCTTCCTCCGCTGCAATT 60.002 52.632 0.00 0.00 36.15 2.32
209 210 1.748122 CAGCTTCCTCCGCTGCAAT 60.748 57.895 0.00 0.00 46.98 3.56
210 211 2.359107 CAGCTTCCTCCGCTGCAA 60.359 61.111 0.00 0.00 46.98 4.08
214 215 2.887738 ATCCTCCAGCTTCCTCCGCT 62.888 60.000 0.00 0.00 38.49 5.52
215 216 1.977293 AATCCTCCAGCTTCCTCCGC 61.977 60.000 0.00 0.00 0.00 5.54
216 217 0.543749 AAATCCTCCAGCTTCCTCCG 59.456 55.000 0.00 0.00 0.00 4.63
217 218 1.409381 CCAAATCCTCCAGCTTCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
218 219 2.021208 GCCAAATCCTCCAGCTTCCTC 61.021 57.143 0.00 0.00 0.00 3.71
219 220 0.033699 GCCAAATCCTCCAGCTTCCT 60.034 55.000 0.00 0.00 0.00 3.36
220 221 1.379642 CGCCAAATCCTCCAGCTTCC 61.380 60.000 0.00 0.00 0.00 3.46
221 222 1.379642 CCGCCAAATCCTCCAGCTTC 61.380 60.000 0.00 0.00 0.00 3.86
222 223 1.379044 CCGCCAAATCCTCCAGCTT 60.379 57.895 0.00 0.00 0.00 3.74
223 224 1.639635 ATCCGCCAAATCCTCCAGCT 61.640 55.000 0.00 0.00 0.00 4.24
224 225 0.108585 TATCCGCCAAATCCTCCAGC 59.891 55.000 0.00 0.00 0.00 4.85
225 226 2.867109 ATATCCGCCAAATCCTCCAG 57.133 50.000 0.00 0.00 0.00 3.86
226 227 2.571653 CCTATATCCGCCAAATCCTCCA 59.428 50.000 0.00 0.00 0.00 3.86
227 228 2.838202 TCCTATATCCGCCAAATCCTCC 59.162 50.000 0.00 0.00 0.00 4.30
228 229 4.553330 TTCCTATATCCGCCAAATCCTC 57.447 45.455 0.00 0.00 0.00 3.71
229 230 4.506802 GGTTTCCTATATCCGCCAAATCCT 60.507 45.833 0.00 0.00 0.00 3.24
230 231 3.756963 GGTTTCCTATATCCGCCAAATCC 59.243 47.826 0.00 0.00 0.00 3.01
231 232 3.756963 GGGTTTCCTATATCCGCCAAATC 59.243 47.826 0.00 0.00 0.00 2.17
232 233 3.397955 AGGGTTTCCTATATCCGCCAAAT 59.602 43.478 0.00 0.00 42.75 2.32
233 234 2.781174 AGGGTTTCCTATATCCGCCAAA 59.219 45.455 0.00 0.00 42.75 3.28
234 235 2.414612 AGGGTTTCCTATATCCGCCAA 58.585 47.619 0.00 0.00 42.75 4.52
235 236 2.112279 AGGGTTTCCTATATCCGCCA 57.888 50.000 0.00 0.00 42.75 5.69
236 237 4.628963 TTTAGGGTTTCCTATATCCGCC 57.371 45.455 0.00 0.00 44.51 6.13
237 238 4.450080 CGTTTTAGGGTTTCCTATATCCGC 59.550 45.833 0.00 0.00 44.51 5.54
238 239 4.450080 GCGTTTTAGGGTTTCCTATATCCG 59.550 45.833 0.00 0.00 44.51 4.18
239 240 4.450080 CGCGTTTTAGGGTTTCCTATATCC 59.550 45.833 0.00 0.00 44.51 2.59
240 241 4.084171 GCGCGTTTTAGGGTTTCCTATATC 60.084 45.833 8.43 0.00 44.51 1.63
241 242 3.811497 GCGCGTTTTAGGGTTTCCTATAT 59.189 43.478 8.43 0.00 44.51 0.86
242 243 3.197265 GCGCGTTTTAGGGTTTCCTATA 58.803 45.455 8.43 0.00 44.51 1.31
243 244 2.011947 GCGCGTTTTAGGGTTTCCTAT 58.988 47.619 8.43 0.00 44.51 2.57
244 245 1.441738 GCGCGTTTTAGGGTTTCCTA 58.558 50.000 8.43 0.00 44.38 2.94
245 246 1.239296 GGCGCGTTTTAGGGTTTCCT 61.239 55.000 8.43 0.00 46.96 3.36
246 247 1.210931 GGCGCGTTTTAGGGTTTCC 59.789 57.895 8.43 0.00 0.00 3.13
247 248 1.154357 CGGCGCGTTTTAGGGTTTC 60.154 57.895 8.43 0.00 0.00 2.78
248 249 2.619165 CCGGCGCGTTTTAGGGTTT 61.619 57.895 8.43 0.00 0.00 3.27
258 259 2.430382 ATTTATCGGATCCGGCGCGT 62.430 55.000 32.79 14.49 40.25 6.01
268 269 4.710375 GGCTCCCTCACTATATTTATCGGA 59.290 45.833 0.00 0.00 0.00 4.55
272 273 5.334421 ACTCGGCTCCCTCACTATATTTAT 58.666 41.667 0.00 0.00 0.00 1.40
384 385 1.299014 GCATCTCTCGCAGACCTCG 60.299 63.158 0.00 0.00 32.26 4.63
385 386 0.030638 GAGCATCTCTCGCAGACCTC 59.969 60.000 0.00 0.00 32.26 3.85
405 406 3.937814 AGTGAAACAAGCCGTATCATCA 58.062 40.909 0.00 0.00 41.43 3.07
406 407 6.604735 AATAGTGAAACAAGCCGTATCATC 57.395 37.500 0.00 0.00 41.43 2.92
407 408 7.120579 TCAAAATAGTGAAACAAGCCGTATCAT 59.879 33.333 0.00 0.00 41.43 2.45
408 409 6.428465 TCAAAATAGTGAAACAAGCCGTATCA 59.572 34.615 0.00 0.00 41.43 2.15
409 410 6.741358 GTCAAAATAGTGAAACAAGCCGTATC 59.259 38.462 0.00 0.00 41.43 2.24
410 411 6.349033 GGTCAAAATAGTGAAACAAGCCGTAT 60.349 38.462 0.00 0.00 41.43 3.06
411 412 5.049267 GGTCAAAATAGTGAAACAAGCCGTA 60.049 40.000 0.00 0.00 41.43 4.02
412 413 4.261447 GGTCAAAATAGTGAAACAAGCCGT 60.261 41.667 0.00 0.00 41.43 5.68
413 414 4.023193 AGGTCAAAATAGTGAAACAAGCCG 60.023 41.667 0.00 0.00 41.43 5.52
414 415 5.453567 AGGTCAAAATAGTGAAACAAGCC 57.546 39.130 0.00 0.00 41.43 4.35
415 416 6.978080 TGAAAGGTCAAAATAGTGAAACAAGC 59.022 34.615 0.00 0.00 41.43 4.01
416 417 8.405531 TCTGAAAGGTCAAAATAGTGAAACAAG 58.594 33.333 0.00 0.00 33.53 3.16
417 418 8.287439 TCTGAAAGGTCAAAATAGTGAAACAA 57.713 30.769 0.00 0.00 33.53 2.83
418 419 7.873719 TCTGAAAGGTCAAAATAGTGAAACA 57.126 32.000 0.00 0.00 33.53 2.83
419 420 9.581099 TTTTCTGAAAGGTCAAAATAGTGAAAC 57.419 29.630 2.75 0.00 31.88 2.78
420 421 9.581099 GTTTTCTGAAAGGTCAAAATAGTGAAA 57.419 29.630 2.75 0.00 31.88 2.69
421 422 8.966868 AGTTTTCTGAAAGGTCAAAATAGTGAA 58.033 29.630 2.75 0.00 31.88 3.18
422 423 8.519799 AGTTTTCTGAAAGGTCAAAATAGTGA 57.480 30.769 2.75 0.00 31.88 3.41
423 424 9.586435 AAAGTTTTCTGAAAGGTCAAAATAGTG 57.414 29.630 2.75 0.00 31.88 2.74
429 430 9.233649 TGTACTAAAGTTTTCTGAAAGGTCAAA 57.766 29.630 2.75 0.00 31.88 2.69
430 431 8.795842 TGTACTAAAGTTTTCTGAAAGGTCAA 57.204 30.769 2.75 0.00 31.88 3.18
431 432 8.795842 TTGTACTAAAGTTTTCTGAAAGGTCA 57.204 30.769 2.75 0.00 0.00 4.02
478 479 9.250624 CGTTATTAAAAGGGTCAAATTGTGAAA 57.749 29.630 0.00 0.00 38.23 2.69
479 480 7.382759 GCGTTATTAAAAGGGTCAAATTGTGAA 59.617 33.333 0.00 0.00 38.23 3.18
480 481 6.864165 GCGTTATTAAAAGGGTCAAATTGTGA 59.136 34.615 0.00 0.00 0.00 3.58
481 482 6.090223 GGCGTTATTAAAAGGGTCAAATTGTG 59.910 38.462 0.00 0.00 0.00 3.33
482 483 6.160684 GGCGTTATTAAAAGGGTCAAATTGT 58.839 36.000 0.00 0.00 0.00 2.71
483 484 6.090223 GTGGCGTTATTAAAAGGGTCAAATTG 59.910 38.462 0.00 0.00 0.00 2.32
484 485 6.160684 GTGGCGTTATTAAAAGGGTCAAATT 58.839 36.000 0.00 0.00 0.00 1.82
485 486 5.244178 TGTGGCGTTATTAAAAGGGTCAAAT 59.756 36.000 0.00 0.00 0.00 2.32
486 487 4.583489 TGTGGCGTTATTAAAAGGGTCAAA 59.417 37.500 0.00 0.00 0.00 2.69
487 488 4.142790 TGTGGCGTTATTAAAAGGGTCAA 58.857 39.130 0.00 0.00 0.00 3.18
488 489 3.752665 TGTGGCGTTATTAAAAGGGTCA 58.247 40.909 0.00 0.00 0.00 4.02
489 490 4.729595 CTTGTGGCGTTATTAAAAGGGTC 58.270 43.478 0.00 0.00 0.00 4.46
490 491 3.057104 GCTTGTGGCGTTATTAAAAGGGT 60.057 43.478 0.00 0.00 0.00 4.34
491 492 3.507786 GCTTGTGGCGTTATTAAAAGGG 58.492 45.455 0.00 0.00 0.00 3.95
492 493 3.507786 GGCTTGTGGCGTTATTAAAAGG 58.492 45.455 0.00 0.00 42.94 3.11
505 506 0.949105 AGAAACGCTACGGCTTGTGG 60.949 55.000 0.00 0.00 36.09 4.17
506 507 0.865769 AAGAAACGCTACGGCTTGTG 59.134 50.000 0.00 0.00 36.09 3.33
507 508 1.145803 GAAGAAACGCTACGGCTTGT 58.854 50.000 0.00 0.00 36.09 3.16
508 509 1.390463 GAGAAGAAACGCTACGGCTTG 59.610 52.381 0.00 0.00 36.09 4.01
509 510 1.272769 AGAGAAGAAACGCTACGGCTT 59.727 47.619 0.00 0.00 36.09 4.35
510 511 0.889306 AGAGAAGAAACGCTACGGCT 59.111 50.000 0.00 0.00 36.09 5.52
511 512 2.556534 TAGAGAAGAAACGCTACGGC 57.443 50.000 0.00 0.00 0.00 5.68
512 513 4.267928 CCAAATAGAGAAGAAACGCTACGG 59.732 45.833 0.00 0.00 0.00 4.02
513 514 5.100259 TCCAAATAGAGAAGAAACGCTACG 58.900 41.667 0.00 0.00 0.00 3.51
514 515 6.963049 TTCCAAATAGAGAAGAAACGCTAC 57.037 37.500 0.00 0.00 0.00 3.58
515 516 7.360575 GTTTCCAAATAGAGAAGAAACGCTA 57.639 36.000 0.00 0.00 37.60 4.26
516 517 6.242508 GTTTCCAAATAGAGAAGAAACGCT 57.757 37.500 0.00 0.00 37.60 5.07
519 520 5.048991 TGGCGTTTCCAAATAGAGAAGAAAC 60.049 40.000 0.00 0.00 43.21 2.78
520 521 5.067273 TGGCGTTTCCAAATAGAGAAGAAA 58.933 37.500 0.00 0.00 43.21 2.52
521 522 4.647611 TGGCGTTTCCAAATAGAGAAGAA 58.352 39.130 0.00 0.00 43.21 2.52
522 523 4.280436 TGGCGTTTCCAAATAGAGAAGA 57.720 40.909 0.00 0.00 43.21 2.87
533 534 2.695359 CTAGCTAGTTTGGCGTTTCCA 58.305 47.619 12.92 0.00 44.85 3.53
534 535 1.397343 GCTAGCTAGTTTGGCGTTTCC 59.603 52.381 21.62 0.00 34.52 3.13
535 536 1.060698 CGCTAGCTAGTTTGGCGTTTC 59.939 52.381 21.62 0.50 40.78 2.78
536 537 1.076332 CGCTAGCTAGTTTGGCGTTT 58.924 50.000 21.62 0.00 40.78 3.60
537 538 2.750815 CGCTAGCTAGTTTGGCGTT 58.249 52.632 21.62 0.00 40.78 4.84
538 539 4.496670 CGCTAGCTAGTTTGGCGT 57.503 55.556 21.62 0.00 40.78 5.68
540 541 0.097150 GCAACGCTAGCTAGTTTGGC 59.903 55.000 25.95 19.52 0.00 4.52
541 542 1.726853 AGCAACGCTAGCTAGTTTGG 58.273 50.000 25.95 15.80 41.32 3.28
542 543 2.736721 TGAAGCAACGCTAGCTAGTTTG 59.263 45.455 21.62 22.47 42.53 2.93
543 544 2.737252 GTGAAGCAACGCTAGCTAGTTT 59.263 45.455 21.62 12.43 42.53 2.66
544 545 2.028930 AGTGAAGCAACGCTAGCTAGTT 60.029 45.455 21.62 7.68 42.53 2.24
545 546 1.546476 AGTGAAGCAACGCTAGCTAGT 59.454 47.619 21.62 0.65 42.53 2.57
546 547 2.285827 AGTGAAGCAACGCTAGCTAG 57.714 50.000 16.84 16.84 42.53 3.42
547 548 2.029380 TGAAGTGAAGCAACGCTAGCTA 60.029 45.455 13.93 0.00 42.53 3.32
548 549 1.270305 TGAAGTGAAGCAACGCTAGCT 60.270 47.619 13.93 0.00 45.97 3.32
549 550 1.148310 TGAAGTGAAGCAACGCTAGC 58.852 50.000 4.06 4.06 38.25 3.42
550 551 5.530519 TTTATGAAGTGAAGCAACGCTAG 57.469 39.130 0.00 0.00 38.25 3.42
551 552 7.603963 TTATTTATGAAGTGAAGCAACGCTA 57.396 32.000 0.00 0.00 38.25 4.26
552 553 6.494893 TTATTTATGAAGTGAAGCAACGCT 57.505 33.333 0.00 0.00 42.56 5.07
553 554 7.484641 TCATTTATTTATGAAGTGAAGCAACGC 59.515 33.333 0.00 0.00 31.82 4.84
554 555 8.894409 TCATTTATTTATGAAGTGAAGCAACG 57.106 30.769 0.00 0.00 31.82 4.10
579 580 8.974408 GCGTTTCACCTAACTTTTCATATTTTT 58.026 29.630 0.00 0.00 0.00 1.94
580 581 7.597369 GGCGTTTCACCTAACTTTTCATATTTT 59.403 33.333 0.00 0.00 0.00 1.82
581 582 7.088272 GGCGTTTCACCTAACTTTTCATATTT 58.912 34.615 0.00 0.00 0.00 1.40
582 583 6.207810 TGGCGTTTCACCTAACTTTTCATATT 59.792 34.615 0.00 0.00 0.00 1.28
583 584 5.708230 TGGCGTTTCACCTAACTTTTCATAT 59.292 36.000 0.00 0.00 0.00 1.78
584 585 5.064558 TGGCGTTTCACCTAACTTTTCATA 58.935 37.500 0.00 0.00 0.00 2.15
585 586 3.886505 TGGCGTTTCACCTAACTTTTCAT 59.113 39.130 0.00 0.00 0.00 2.57
586 587 3.280295 TGGCGTTTCACCTAACTTTTCA 58.720 40.909 0.00 0.00 0.00 2.69
587 588 3.974871 TGGCGTTTCACCTAACTTTTC 57.025 42.857 0.00 0.00 0.00 2.29
588 589 3.181484 GGTTGGCGTTTCACCTAACTTTT 60.181 43.478 0.00 0.00 0.00 2.27
589 590 2.359848 GGTTGGCGTTTCACCTAACTTT 59.640 45.455 0.00 0.00 0.00 2.66
590 591 1.951602 GGTTGGCGTTTCACCTAACTT 59.048 47.619 0.00 0.00 0.00 2.66
591 592 1.134037 TGGTTGGCGTTTCACCTAACT 60.134 47.619 0.00 0.00 0.00 2.24
592 593 1.310904 TGGTTGGCGTTTCACCTAAC 58.689 50.000 0.00 0.00 0.00 2.34
593 594 2.156098 GATGGTTGGCGTTTCACCTAA 58.844 47.619 0.00 0.00 0.00 2.69
594 595 1.612199 GGATGGTTGGCGTTTCACCTA 60.612 52.381 0.00 0.00 0.00 3.08
595 596 0.893727 GGATGGTTGGCGTTTCACCT 60.894 55.000 0.00 0.00 0.00 4.00
596 597 0.893727 AGGATGGTTGGCGTTTCACC 60.894 55.000 0.00 0.00 0.00 4.02
597 598 0.958822 AAGGATGGTTGGCGTTTCAC 59.041 50.000 0.00 0.00 0.00 3.18
598 599 0.958091 CAAGGATGGTTGGCGTTTCA 59.042 50.000 0.00 0.00 0.00 2.69
599 600 0.243636 CCAAGGATGGTTGGCGTTTC 59.756 55.000 0.00 0.00 40.70 2.78
600 601 2.350738 CCAAGGATGGTTGGCGTTT 58.649 52.632 0.00 0.00 40.70 3.60
601 602 4.095590 CCAAGGATGGTTGGCGTT 57.904 55.556 0.00 0.00 40.70 4.84
610 611 1.517694 GCATGCAACGCCAAGGATG 60.518 57.895 14.21 0.00 36.75 3.51
611 612 1.252904 AAGCATGCAACGCCAAGGAT 61.253 50.000 21.98 0.00 0.00 3.24
612 613 1.902918 AAGCATGCAACGCCAAGGA 60.903 52.632 21.98 0.00 0.00 3.36
613 614 1.735198 CAAGCATGCAACGCCAAGG 60.735 57.895 21.98 0.00 0.00 3.61
614 615 1.735198 CCAAGCATGCAACGCCAAG 60.735 57.895 21.98 0.00 0.00 3.61
615 616 2.339348 CCAAGCATGCAACGCCAA 59.661 55.556 21.98 0.00 0.00 4.52
616 617 3.682885 CCCAAGCATGCAACGCCA 61.683 61.111 21.98 0.00 0.00 5.69
618 619 4.360964 TGCCCAAGCATGCAACGC 62.361 61.111 21.98 15.48 46.52 4.84
634 635 3.451056 AAGGGGGTGGGTGTTGCTG 62.451 63.158 0.00 0.00 0.00 4.41
635 636 3.110031 AAGGGGGTGGGTGTTGCT 61.110 61.111 0.00 0.00 0.00 3.91
636 637 2.917227 CAAGGGGGTGGGTGTTGC 60.917 66.667 0.00 0.00 0.00 4.17
637 638 2.203625 CCAAGGGGGTGGGTGTTG 60.204 66.667 0.00 0.00 34.77 3.33
638 639 4.233558 GCCAAGGGGGTGGGTGTT 62.234 66.667 0.00 0.00 39.26 3.32
657 658 3.305398 AGTTTGTTGCGTTGTTGGAAA 57.695 38.095 0.00 0.00 0.00 3.13
658 659 3.305398 AAGTTTGTTGCGTTGTTGGAA 57.695 38.095 0.00 0.00 0.00 3.53
659 660 2.989840 CAAAGTTTGTTGCGTTGTTGGA 59.010 40.909 7.48 0.00 0.00 3.53
660 661 2.093467 CCAAAGTTTGTTGCGTTGTTGG 59.907 45.455 14.36 0.00 0.00 3.77
661 662 2.473704 GCCAAAGTTTGTTGCGTTGTTG 60.474 45.455 14.36 0.00 0.00 3.33
662 663 1.729517 GCCAAAGTTTGTTGCGTTGTT 59.270 42.857 14.36 0.00 0.00 2.83
663 664 1.355005 GCCAAAGTTTGTTGCGTTGT 58.645 45.000 14.36 0.00 0.00 3.32
664 665 0.297230 CGCCAAAGTTTGTTGCGTTG 59.703 50.000 23.03 6.32 0.00 4.10
665 666 0.109039 ACGCCAAAGTTTGTTGCGTT 60.109 45.000 28.01 17.54 37.71 4.84
666 667 0.109039 AACGCCAAAGTTTGTTGCGT 60.109 45.000 28.01 28.01 40.44 5.24
667 668 0.995728 AAACGCCAAAGTTTGTTGCG 59.004 45.000 27.00 27.00 42.12 4.85
668 669 3.543265 GCTAAAACGCCAAAGTTTGTTGC 60.543 43.478 14.36 10.25 42.81 4.17
669 670 4.176813 GCTAAAACGCCAAAGTTTGTTG 57.823 40.909 14.36 8.53 42.81 3.33
681 682 1.226030 ACGTGACAGGGCTAAAACGC 61.226 55.000 0.00 0.00 34.54 4.84
682 683 1.990563 CTACGTGACAGGGCTAAAACG 59.009 52.381 0.00 0.00 37.09 3.60
683 684 1.730612 GCTACGTGACAGGGCTAAAAC 59.269 52.381 0.00 0.00 0.00 2.43
684 685 1.345089 TGCTACGTGACAGGGCTAAAA 59.655 47.619 0.00 0.00 0.00 1.52
685 686 0.970640 TGCTACGTGACAGGGCTAAA 59.029 50.000 0.00 0.00 0.00 1.85
686 687 1.136305 GATGCTACGTGACAGGGCTAA 59.864 52.381 0.00 0.00 0.00 3.09
687 688 0.744874 GATGCTACGTGACAGGGCTA 59.255 55.000 0.00 0.00 0.00 3.93
688 689 0.972983 AGATGCTACGTGACAGGGCT 60.973 55.000 0.00 0.00 0.00 5.19
689 690 0.528684 GAGATGCTACGTGACAGGGC 60.529 60.000 0.00 0.00 0.00 5.19
690 691 0.248661 CGAGATGCTACGTGACAGGG 60.249 60.000 0.00 0.00 0.00 4.45
691 692 0.733150 TCGAGATGCTACGTGACAGG 59.267 55.000 0.00 0.00 0.00 4.00
692 693 2.032178 TGATCGAGATGCTACGTGACAG 59.968 50.000 0.00 0.00 0.00 3.51
693 694 2.014128 TGATCGAGATGCTACGTGACA 58.986 47.619 0.00 0.00 0.00 3.58
694 695 2.603412 CCTGATCGAGATGCTACGTGAC 60.603 54.545 0.00 0.00 0.00 3.67
695 696 1.604278 CCTGATCGAGATGCTACGTGA 59.396 52.381 0.00 0.00 0.00 4.35
696 697 1.928152 GCCTGATCGAGATGCTACGTG 60.928 57.143 0.00 0.00 0.00 4.49
697 698 0.312416 GCCTGATCGAGATGCTACGT 59.688 55.000 0.00 0.00 0.00 3.57
698 699 0.387878 GGCCTGATCGAGATGCTACG 60.388 60.000 0.00 0.00 0.00 3.51
699 700 0.676184 TGGCCTGATCGAGATGCTAC 59.324 55.000 3.32 0.00 0.00 3.58
700 701 0.964700 CTGGCCTGATCGAGATGCTA 59.035 55.000 3.32 0.00 0.00 3.49
701 702 1.747145 CTGGCCTGATCGAGATGCT 59.253 57.895 3.32 0.00 0.00 3.79
702 703 1.960250 GCTGGCCTGATCGAGATGC 60.960 63.158 14.77 0.00 0.00 3.91
703 704 0.179065 TTGCTGGCCTGATCGAGATG 60.179 55.000 14.77 0.00 0.00 2.90
704 705 0.179062 GTTGCTGGCCTGATCGAGAT 60.179 55.000 14.77 0.00 0.00 2.75
705 706 1.219124 GTTGCTGGCCTGATCGAGA 59.781 57.895 14.77 0.00 0.00 4.04
706 707 2.169789 CGTTGCTGGCCTGATCGAG 61.170 63.158 14.77 0.00 0.00 4.04
707 708 2.125552 CGTTGCTGGCCTGATCGA 60.126 61.111 14.77 0.00 0.00 3.59
708 709 2.906182 TAGCGTTGCTGGCCTGATCG 62.906 60.000 14.77 14.12 40.10 3.69
709 710 1.153369 TAGCGTTGCTGGCCTGATC 60.153 57.895 14.77 0.00 40.10 2.92
710 711 1.153289 CTAGCGTTGCTGGCCTGAT 60.153 57.895 14.77 0.00 40.10 2.90
711 712 2.265739 CTAGCGTTGCTGGCCTGA 59.734 61.111 14.77 0.00 40.10 3.86
716 717 1.394917 CAAACTAGCTAGCGTTGCTGG 59.605 52.381 20.91 10.03 43.28 4.85
717 718 1.394917 CCAAACTAGCTAGCGTTGCTG 59.605 52.381 23.31 12.73 40.10 4.41
718 719 1.726853 CCAAACTAGCTAGCGTTGCT 58.273 50.000 23.31 3.43 43.41 3.91
719 720 0.097150 GCCAAACTAGCTAGCGTTGC 59.903 55.000 23.31 16.86 0.00 4.17
720 721 0.370273 CGCCAAACTAGCTAGCGTTG 59.630 55.000 20.91 21.80 41.78 4.10
721 722 2.750815 CGCCAAACTAGCTAGCGTT 58.249 52.632 20.91 12.14 41.78 4.84
722 723 4.496670 CGCCAAACTAGCTAGCGT 57.503 55.556 20.91 6.18 41.78 5.07
724 725 2.482721 TGAAAACGCCAAACTAGCTAGC 59.517 45.455 20.91 6.62 0.00 3.42
725 726 4.946784 ATGAAAACGCCAAACTAGCTAG 57.053 40.909 19.44 19.44 0.00 3.42
726 727 6.202188 GCTATATGAAAACGCCAAACTAGCTA 59.798 38.462 0.00 0.00 0.00 3.32
727 728 5.007724 GCTATATGAAAACGCCAAACTAGCT 59.992 40.000 0.00 0.00 0.00 3.32
728 729 5.205565 GCTATATGAAAACGCCAAACTAGC 58.794 41.667 0.00 0.00 0.00 3.42
729 730 5.233476 TCGCTATATGAAAACGCCAAACTAG 59.767 40.000 0.00 0.00 0.00 2.57
730 731 5.110598 TCGCTATATGAAAACGCCAAACTA 58.889 37.500 0.00 0.00 0.00 2.24
731 732 3.936453 TCGCTATATGAAAACGCCAAACT 59.064 39.130 0.00 0.00 0.00 2.66
732 733 4.267357 TCGCTATATGAAAACGCCAAAC 57.733 40.909 0.00 0.00 0.00 2.93
733 734 3.242608 GCTCGCTATATGAAAACGCCAAA 60.243 43.478 0.00 0.00 0.00 3.28
734 735 2.286833 GCTCGCTATATGAAAACGCCAA 59.713 45.455 0.00 0.00 0.00 4.52
735 736 1.864711 GCTCGCTATATGAAAACGCCA 59.135 47.619 0.00 0.00 0.00 5.69
736 737 1.864711 TGCTCGCTATATGAAAACGCC 59.135 47.619 0.00 0.00 0.00 5.68
737 738 3.280775 GTTGCTCGCTATATGAAAACGC 58.719 45.455 0.00 0.00 0.00 4.84
738 739 3.522362 CGTTGCTCGCTATATGAAAACG 58.478 45.455 0.00 0.00 32.67 3.60
752 753 2.639327 AAAGGCCATGGCGTTGCTC 61.639 57.895 37.63 20.82 46.55 4.26
753 754 2.601367 AAAGGCCATGGCGTTGCT 60.601 55.556 37.63 24.26 46.55 3.91
754 755 2.432972 CAAAGGCCATGGCGTTGC 60.433 61.111 37.63 21.88 46.55 4.17
755 756 2.262292 CCAAAGGCCATGGCGTTG 59.738 61.111 37.63 33.92 46.55 4.10
764 765 7.970421 ATCTTTTTCAGAAACGCCAAAGGCC 62.970 44.000 0.00 0.00 39.48 5.19
765 766 2.217429 TTTTCAGAAACGCCAAAGGC 57.783 45.000 0.00 0.00 46.75 4.35
766 767 4.040445 TCTTTTTCAGAAACGCCAAAGG 57.960 40.909 0.00 0.00 0.00 3.11
767 768 5.280945 TGATCTTTTTCAGAAACGCCAAAG 58.719 37.500 0.00 0.00 34.16 2.77
768 769 5.067153 TCTGATCTTTTTCAGAAACGCCAAA 59.933 36.000 1.81 0.00 46.92 3.28
769 770 4.578516 TCTGATCTTTTTCAGAAACGCCAA 59.421 37.500 1.81 0.00 46.92 4.52
770 771 4.133820 TCTGATCTTTTTCAGAAACGCCA 58.866 39.130 1.81 0.00 46.92 5.69
771 772 4.749245 TCTGATCTTTTTCAGAAACGCC 57.251 40.909 1.81 0.00 46.92 5.68
778 779 9.472361 ACAATTTCACAATCTGATCTTTTTCAG 57.528 29.630 0.00 0.00 43.70 3.02
779 780 9.820725 AACAATTTCACAATCTGATCTTTTTCA 57.179 25.926 0.00 0.00 0.00 2.69
783 784 9.603921 ACAAAACAATTTCACAATCTGATCTTT 57.396 25.926 0.00 0.00 0.00 2.52
784 785 9.037737 CACAAAACAATTTCACAATCTGATCTT 57.962 29.630 0.00 0.00 0.00 2.40
785 786 8.199449 ACACAAAACAATTTCACAATCTGATCT 58.801 29.630 0.00 0.00 0.00 2.75
786 787 8.270799 CACACAAAACAATTTCACAATCTGATC 58.729 33.333 0.00 0.00 0.00 2.92
787 788 7.225145 CCACACAAAACAATTTCACAATCTGAT 59.775 33.333 0.00 0.00 0.00 2.90
788 789 6.534436 CCACACAAAACAATTTCACAATCTGA 59.466 34.615 0.00 0.00 0.00 3.27
789 790 6.534436 TCCACACAAAACAATTTCACAATCTG 59.466 34.615 0.00 0.00 0.00 2.90
790 791 6.638610 TCCACACAAAACAATTTCACAATCT 58.361 32.000 0.00 0.00 0.00 2.40
791 792 6.534793 ACTCCACACAAAACAATTTCACAATC 59.465 34.615 0.00 0.00 0.00 2.67
792 793 6.405538 ACTCCACACAAAACAATTTCACAAT 58.594 32.000 0.00 0.00 0.00 2.71
793 794 5.788450 ACTCCACACAAAACAATTTCACAA 58.212 33.333 0.00 0.00 0.00 3.33
794 795 5.398603 ACTCCACACAAAACAATTTCACA 57.601 34.783 0.00 0.00 0.00 3.58
795 796 5.866633 TGAACTCCACACAAAACAATTTCAC 59.133 36.000 0.00 0.00 0.00 3.18
796 797 6.030548 TGAACTCCACACAAAACAATTTCA 57.969 33.333 0.00 0.00 0.00 2.69
797 798 7.538303 AATGAACTCCACACAAAACAATTTC 57.462 32.000 0.00 0.00 0.00 2.17
798 799 7.920160 AAATGAACTCCACACAAAACAATTT 57.080 28.000 0.00 0.00 0.00 1.82
799 800 7.390162 ACAAAATGAACTCCACACAAAACAATT 59.610 29.630 0.00 0.00 0.00 2.32
800 801 6.878389 ACAAAATGAACTCCACACAAAACAAT 59.122 30.769 0.00 0.00 0.00 2.71
801 802 6.146837 CACAAAATGAACTCCACACAAAACAA 59.853 34.615 0.00 0.00 0.00 2.83
802 803 5.636965 CACAAAATGAACTCCACACAAAACA 59.363 36.000 0.00 0.00 0.00 2.83
803 804 5.445806 GCACAAAATGAACTCCACACAAAAC 60.446 40.000 0.00 0.00 0.00 2.43
804 805 4.629200 GCACAAAATGAACTCCACACAAAA 59.371 37.500 0.00 0.00 0.00 2.44
805 806 4.081752 AGCACAAAATGAACTCCACACAAA 60.082 37.500 0.00 0.00 0.00 2.83
806 807 3.446873 AGCACAAAATGAACTCCACACAA 59.553 39.130 0.00 0.00 0.00 3.33
807 808 3.023119 AGCACAAAATGAACTCCACACA 58.977 40.909 0.00 0.00 0.00 3.72
808 809 3.715628 AGCACAAAATGAACTCCACAC 57.284 42.857 0.00 0.00 0.00 3.82
809 810 5.359576 ACTTTAGCACAAAATGAACTCCACA 59.640 36.000 0.00 0.00 0.00 4.17
810 811 5.831997 ACTTTAGCACAAAATGAACTCCAC 58.168 37.500 0.00 0.00 0.00 4.02
811 812 6.463995 AACTTTAGCACAAAATGAACTCCA 57.536 33.333 0.00 0.00 0.00 3.86
812 813 6.420903 GGAAACTTTAGCACAAAATGAACTCC 59.579 38.462 0.00 0.00 0.00 3.85
813 814 7.203218 AGGAAACTTTAGCACAAAATGAACTC 58.797 34.615 0.00 0.00 37.44 3.01
814 815 7.112452 AGGAAACTTTAGCACAAAATGAACT 57.888 32.000 0.00 0.00 37.44 3.01
815 816 6.142320 CGAGGAAACTTTAGCACAAAATGAAC 59.858 38.462 0.00 0.00 44.43 3.18
816 817 6.183360 ACGAGGAAACTTTAGCACAAAATGAA 60.183 34.615 0.00 0.00 44.43 2.57
817 818 5.298276 ACGAGGAAACTTTAGCACAAAATGA 59.702 36.000 0.00 0.00 44.43 2.57
818 819 5.519722 ACGAGGAAACTTTAGCACAAAATG 58.480 37.500 0.00 0.00 44.43 2.32
819 820 5.767816 ACGAGGAAACTTTAGCACAAAAT 57.232 34.783 0.00 0.00 44.43 1.82
820 821 6.238538 CCTTACGAGGAAACTTTAGCACAAAA 60.239 38.462 0.00 0.00 46.74 2.44
821 822 5.237779 CCTTACGAGGAAACTTTAGCACAAA 59.762 40.000 0.00 0.00 46.74 2.83
822 823 4.753107 CCTTACGAGGAAACTTTAGCACAA 59.247 41.667 0.00 0.00 46.74 3.33
823 824 4.202284 ACCTTACGAGGAAACTTTAGCACA 60.202 41.667 0.00 0.00 46.74 4.57
824 825 4.313282 ACCTTACGAGGAAACTTTAGCAC 58.687 43.478 0.00 0.00 46.74 4.40
825 826 4.039488 TGACCTTACGAGGAAACTTTAGCA 59.961 41.667 0.00 0.00 46.74 3.49
826 827 4.563061 TGACCTTACGAGGAAACTTTAGC 58.437 43.478 0.00 0.00 46.74 3.09
827 828 6.022163 TCTGACCTTACGAGGAAACTTTAG 57.978 41.667 0.00 0.00 46.74 1.85
828 829 6.266103 TCTTCTGACCTTACGAGGAAACTTTA 59.734 38.462 0.00 0.00 46.74 1.85
829 830 4.950205 TCTGACCTTACGAGGAAACTTT 57.050 40.909 0.00 0.00 46.74 2.66
830 831 4.587684 TCTTCTGACCTTACGAGGAAACTT 59.412 41.667 0.00 0.00 46.74 2.66
831 832 4.150359 TCTTCTGACCTTACGAGGAAACT 58.850 43.478 0.00 0.00 46.74 2.66
832 833 4.022155 ACTCTTCTGACCTTACGAGGAAAC 60.022 45.833 0.00 0.00 46.74 2.78
833 834 4.022242 CACTCTTCTGACCTTACGAGGAAA 60.022 45.833 0.00 0.00 46.74 3.13
834 835 3.506455 CACTCTTCTGACCTTACGAGGAA 59.494 47.826 0.00 0.00 46.74 3.36
835 836 3.082548 CACTCTTCTGACCTTACGAGGA 58.917 50.000 0.00 0.00 46.74 3.71
837 838 4.768130 TTCACTCTTCTGACCTTACGAG 57.232 45.455 0.00 0.00 0.00 4.18
838 839 5.524971 TTTTCACTCTTCTGACCTTACGA 57.475 39.130 0.00 0.00 0.00 3.43
839 840 5.177696 CCTTTTTCACTCTTCTGACCTTACG 59.822 44.000 0.00 0.00 0.00 3.18
840 841 5.049336 GCCTTTTTCACTCTTCTGACCTTAC 60.049 44.000 0.00 0.00 0.00 2.34
841 842 5.063880 GCCTTTTTCACTCTTCTGACCTTA 58.936 41.667 0.00 0.00 0.00 2.69
842 843 3.885901 GCCTTTTTCACTCTTCTGACCTT 59.114 43.478 0.00 0.00 0.00 3.50
843 844 3.481453 GCCTTTTTCACTCTTCTGACCT 58.519 45.455 0.00 0.00 0.00 3.85
844 845 2.554462 GGCCTTTTTCACTCTTCTGACC 59.446 50.000 0.00 0.00 0.00 4.02
845 846 3.251972 CAGGCCTTTTTCACTCTTCTGAC 59.748 47.826 0.00 0.00 0.00 3.51
846 847 3.136443 TCAGGCCTTTTTCACTCTTCTGA 59.864 43.478 0.00 0.00 0.00 3.27
847 848 3.480470 TCAGGCCTTTTTCACTCTTCTG 58.520 45.455 0.00 0.00 0.00 3.02
848 849 3.864789 TCAGGCCTTTTTCACTCTTCT 57.135 42.857 0.00 0.00 0.00 2.85
849 850 4.074970 TCATCAGGCCTTTTTCACTCTTC 58.925 43.478 0.00 0.00 0.00 2.87
850 851 4.104383 TCATCAGGCCTTTTTCACTCTT 57.896 40.909 0.00 0.00 0.00 2.85
851 852 3.795688 TCATCAGGCCTTTTTCACTCT 57.204 42.857 0.00 0.00 0.00 3.24
852 853 5.065731 CAGTATCATCAGGCCTTTTTCACTC 59.934 44.000 0.00 0.00 0.00 3.51
853 854 4.946157 CAGTATCATCAGGCCTTTTTCACT 59.054 41.667 0.00 0.00 0.00 3.41
854 855 4.096984 CCAGTATCATCAGGCCTTTTTCAC 59.903 45.833 0.00 0.00 0.00 3.18
855 856 4.272489 CCAGTATCATCAGGCCTTTTTCA 58.728 43.478 0.00 0.00 0.00 2.69
856 857 3.067320 GCCAGTATCATCAGGCCTTTTTC 59.933 47.826 0.00 0.00 41.25 2.29
857 858 3.026694 GCCAGTATCATCAGGCCTTTTT 58.973 45.455 0.00 0.00 41.25 1.94
858 859 2.025037 TGCCAGTATCATCAGGCCTTTT 60.025 45.455 0.00 0.00 46.45 2.27
859 860 1.565759 TGCCAGTATCATCAGGCCTTT 59.434 47.619 0.00 0.00 46.45 3.11
860 861 1.133976 GTGCCAGTATCATCAGGCCTT 60.134 52.381 0.00 0.00 46.45 4.35
861 862 0.471617 GTGCCAGTATCATCAGGCCT 59.528 55.000 0.00 0.00 46.45 5.19
862 863 0.181114 TGTGCCAGTATCATCAGGCC 59.819 55.000 0.00 0.00 46.45 5.19
864 865 2.876550 CACATGTGCCAGTATCATCAGG 59.123 50.000 13.94 0.00 0.00 3.86
891 892 3.631714 GTGACGATCACGAGCTCAT 57.368 52.632 15.40 0.00 37.67 2.90
970 971 2.612212 GTTTTGAACTCGCAGTTGGAGA 59.388 45.455 6.31 0.00 38.80 3.71
992 993 2.747460 GGTTCTGCATCTGCGGCA 60.747 61.111 1.29 1.29 46.62 5.69
1351 1352 2.049063 GGAGCGTCTGTTCTGCGT 60.049 61.111 0.00 0.00 0.00 5.24
1471 1472 2.579201 CTGCCTCCCGACAACGAT 59.421 61.111 0.00 0.00 42.66 3.73
1473 1474 4.003788 ACCTGCCTCCCGACAACG 62.004 66.667 0.00 0.00 39.43 4.10
1554 1555 0.176680 AGCCGCTCTTGGAGTACATG 59.823 55.000 0.00 0.00 31.39 3.21
1681 1682 6.678878 CAATCATCTCCCTGAAAATATGCAG 58.321 40.000 0.00 0.00 0.00 4.41
1686 1687 6.005066 TCAGCAATCATCTCCCTGAAAATA 57.995 37.500 0.00 0.00 30.30 1.40
1755 1756 2.119484 TACCCAGAACCCCACAAGCG 62.119 60.000 0.00 0.00 0.00 4.68
1820 1821 4.207955 TGCATACGAGTTAGAGTCCAGAT 58.792 43.478 0.00 0.00 0.00 2.90
1821 1822 3.617284 TGCATACGAGTTAGAGTCCAGA 58.383 45.455 0.00 0.00 0.00 3.86
1829 1830 4.242475 TGAACAACCTGCATACGAGTTAG 58.758 43.478 0.00 0.00 0.00 2.34
1893 1894 6.834168 TCAATCCCATAAAACACTTTCCTC 57.166 37.500 0.00 0.00 0.00 3.71
2066 2067 1.825090 CTGTAAAGCATCACAGCCCA 58.175 50.000 0.00 0.00 36.09 5.36
2119 2120 0.336048 ACATCCCCATCCAAACCCAG 59.664 55.000 0.00 0.00 0.00 4.45
2318 2319 3.680786 CGTCCAGACTCGGCACCA 61.681 66.667 0.00 0.00 0.00 4.17
2502 2503 3.256558 GCCCATCATTTCAAAGTGCTTC 58.743 45.455 0.00 0.00 0.00 3.86
2610 2611 3.593328 TGATCCCCAAGTTTCTCATCCTT 59.407 43.478 0.00 0.00 0.00 3.36
2628 2629 7.546667 ACAAATGTTACATGATTTGGCTTGATC 59.453 33.333 17.21 0.00 41.78 2.92
3254 3255 6.042552 AGACCTGACTCAACCATATTCCATAG 59.957 42.308 0.00 0.00 0.00 2.23
3464 3467 6.099845 ACCCGGTAAGACATATTTCTCTTCAT 59.900 38.462 0.00 0.00 0.00 2.57
3609 3612 7.113658 TCTTGCTCCACTACTAAAATCCTAG 57.886 40.000 0.00 0.00 0.00 3.02
3701 3704 1.696336 AGGAAGAGCTTCTCACTGCAA 59.304 47.619 9.82 0.00 39.45 4.08
3883 3889 5.667539 TTGAATTTTTGAACAGTCCACCA 57.332 34.783 0.00 0.00 0.00 4.17
4070 4077 4.280929 TGAATACATGATCAGGGTAGACCG 59.719 45.833 12.66 0.00 46.96 4.79
4163 4171 7.441017 CCACAGTCCTTTATTCAAATCCAAAA 58.559 34.615 0.00 0.00 0.00 2.44
4173 4181 2.808906 AGCCCCACAGTCCTTTATTC 57.191 50.000 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.