Multiple sequence alignment - TraesCS2B01G397300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G397300 chr2B 100.000 4358 0 0 1 4358 563925100 563920743 0.000000e+00 8048
1 TraesCS2B01G397300 chr2D 92.194 3254 112 51 455 3609 480779233 480776023 0.000000e+00 4471
2 TraesCS2B01G397300 chr2D 85.190 763 36 27 3632 4358 480775723 480775002 0.000000e+00 712
3 TraesCS2B01G397300 chr2A 91.214 3255 118 73 455 3609 623565304 623562118 0.000000e+00 4272
4 TraesCS2B01G397300 chr2A 82.138 767 75 42 3619 4358 623561880 623561149 6.240000e-168 601
5 TraesCS2B01G397300 chr6A 80.315 1016 160 30 1078 2070 415907614 415906616 0.000000e+00 732
6 TraesCS2B01G397300 chr6D 80.078 1024 166 29 1069 2070 301268285 301269292 0.000000e+00 726
7 TraesCS2B01G397300 chr6B 79.354 1022 177 26 1069 2070 466695836 466696843 0.000000e+00 688
8 TraesCS2B01G397300 chr7A 80.704 653 94 22 1054 1687 641581310 641580671 3.050000e-131 479
9 TraesCS2B01G397300 chr7D 80.093 648 98 19 1054 1687 556120956 556121586 1.850000e-123 453
10 TraesCS2B01G397300 chr7D 97.500 80 2 0 2234 2313 598763068 598763147 2.110000e-28 137
11 TraesCS2B01G397300 chr7B 79.908 652 95 16 1054 1687 602938401 602939034 3.090000e-121 446
12 TraesCS2B01G397300 chr1D 80.679 471 78 9 1235 1700 217143218 217143680 1.930000e-93 353
13 TraesCS2B01G397300 chr1B 77.395 668 104 34 1073 1700 310927113 310927773 1.930000e-93 353
14 TraesCS2B01G397300 chr1A 80.467 471 79 9 1235 1700 278142122 278142584 8.970000e-92 348
15 TraesCS2B01G397300 chr5D 96.386 83 3 0 2234 2316 446044758 446044676 2.110000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G397300 chr2B 563920743 563925100 4357 True 8048.0 8048 100.000 1 4358 1 chr2B.!!$R1 4357
1 TraesCS2B01G397300 chr2D 480775002 480779233 4231 True 2591.5 4471 88.692 455 4358 2 chr2D.!!$R1 3903
2 TraesCS2B01G397300 chr2A 623561149 623565304 4155 True 2436.5 4272 86.676 455 4358 2 chr2A.!!$R1 3903
3 TraesCS2B01G397300 chr6A 415906616 415907614 998 True 732.0 732 80.315 1078 2070 1 chr6A.!!$R1 992
4 TraesCS2B01G397300 chr6D 301268285 301269292 1007 False 726.0 726 80.078 1069 2070 1 chr6D.!!$F1 1001
5 TraesCS2B01G397300 chr6B 466695836 466696843 1007 False 688.0 688 79.354 1069 2070 1 chr6B.!!$F1 1001
6 TraesCS2B01G397300 chr7A 641580671 641581310 639 True 479.0 479 80.704 1054 1687 1 chr7A.!!$R1 633
7 TraesCS2B01G397300 chr7D 556120956 556121586 630 False 453.0 453 80.093 1054 1687 1 chr7D.!!$F1 633
8 TraesCS2B01G397300 chr7B 602938401 602939034 633 False 446.0 446 79.908 1054 1687 1 chr7B.!!$F1 633
9 TraesCS2B01G397300 chr1B 310927113 310927773 660 False 353.0 353 77.395 1073 1700 1 chr1B.!!$F1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.031043 TTTCTTCGCGAGTTCGGTGA 59.969 50.0 9.59 0.0 40.23 4.02 F
319 320 0.242825 TTCTTCGCGAGTTCGGTGAT 59.757 50.0 9.59 0.0 40.23 3.06 F
321 322 0.366871 CTTCGCGAGTTCGGTGATTG 59.633 55.0 9.59 0.0 40.23 2.67 F
365 366 0.521291 TACACCGACCCTCGTAAACG 59.479 55.0 0.00 0.0 38.40 3.60 F
560 569 0.756903 GCCGGCCATAGTCCTCTTTA 59.243 55.0 18.11 0.0 0.00 1.85 F
903 977 0.921896 CATTCCCCCACTCACTCCAT 59.078 55.0 0.00 0.0 0.00 3.41 F
2716 2906 0.440371 GCGCTCCGACAAAGAAGAAG 59.560 55.0 0.00 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2071 2226 0.460987 GAATCTCCAGAGTGTGCCGG 60.461 60.000 0.00 0.0 0.00 6.13 R
2122 2290 1.135199 GCATTGAGAGTTGCCATGTGG 60.135 52.381 0.00 0.0 38.53 4.17 R
2189 2366 2.038952 CCTGCGGATTCATGGAGGAATA 59.961 50.000 9.26 0.0 45.70 1.75 R
2341 2522 2.353610 GGGGAAGTCGGCGTAGGAA 61.354 63.158 6.85 0.0 0.00 3.36 R
2434 2621 1.072159 GAAGCTGTGGTGCAGGAGT 59.928 57.895 0.00 0.0 45.14 3.85 R
3095 3291 2.107750 CATCTCGGACATGCGGCT 59.892 61.111 0.00 0.0 0.00 5.52 R
4065 4602 0.179163 CGCTGACGACAGTGCTGATA 60.179 55.000 15.02 0.0 45.45 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.353836 GCTCCAAAGCGGCGACAA 61.354 61.111 12.98 0.00 39.10 3.18
26 27 2.690778 GCTCCAAAGCGGCGACAAT 61.691 57.895 12.98 0.00 39.10 2.71
27 28 1.135315 CTCCAAAGCGGCGACAATG 59.865 57.895 12.98 3.00 33.14 2.82
28 29 2.179018 CCAAAGCGGCGACAATGG 59.821 61.111 12.98 9.16 0.00 3.16
29 30 2.504681 CAAAGCGGCGACAATGGC 60.505 61.111 12.98 0.00 0.00 4.40
30 31 2.983030 AAAGCGGCGACAATGGCA 60.983 55.556 12.98 0.00 0.00 4.92
31 32 2.560119 AAAGCGGCGACAATGGCAA 61.560 52.632 12.98 0.00 0.00 4.52
32 33 2.476534 AAAGCGGCGACAATGGCAAG 62.477 55.000 12.98 0.00 0.00 4.01
33 34 3.737172 GCGGCGACAATGGCAAGT 61.737 61.111 12.98 0.00 0.00 3.16
34 35 2.395360 GCGGCGACAATGGCAAGTA 61.395 57.895 12.98 0.00 0.00 2.24
35 36 1.917782 GCGGCGACAATGGCAAGTAA 61.918 55.000 12.98 0.00 0.00 2.24
36 37 0.732571 CGGCGACAATGGCAAGTAAT 59.267 50.000 0.00 0.00 0.00 1.89
37 38 1.531677 CGGCGACAATGGCAAGTAATG 60.532 52.381 0.00 0.00 0.00 1.90
38 39 1.742831 GGCGACAATGGCAAGTAATGA 59.257 47.619 0.00 0.00 0.00 2.57
39 40 2.223340 GGCGACAATGGCAAGTAATGAG 60.223 50.000 0.00 0.00 0.00 2.90
40 41 2.223340 GCGACAATGGCAAGTAATGAGG 60.223 50.000 0.00 0.00 0.00 3.86
41 42 3.270027 CGACAATGGCAAGTAATGAGGA 58.730 45.455 0.00 0.00 0.00 3.71
42 43 3.689161 CGACAATGGCAAGTAATGAGGAA 59.311 43.478 0.00 0.00 0.00 3.36
43 44 4.336433 CGACAATGGCAAGTAATGAGGAAT 59.664 41.667 0.00 0.00 0.00 3.01
44 45 5.163622 CGACAATGGCAAGTAATGAGGAATT 60.164 40.000 0.00 0.00 0.00 2.17
45 46 6.038161 CGACAATGGCAAGTAATGAGGAATTA 59.962 38.462 0.00 0.00 0.00 1.40
46 47 7.338800 ACAATGGCAAGTAATGAGGAATTAG 57.661 36.000 0.00 0.00 31.22 1.73
47 48 6.322201 ACAATGGCAAGTAATGAGGAATTAGG 59.678 38.462 0.00 0.00 31.22 2.69
48 49 4.792068 TGGCAAGTAATGAGGAATTAGGG 58.208 43.478 0.00 0.00 31.22 3.53
49 50 4.476846 TGGCAAGTAATGAGGAATTAGGGA 59.523 41.667 0.00 0.00 31.22 4.20
50 51 5.134339 TGGCAAGTAATGAGGAATTAGGGAT 59.866 40.000 0.00 0.00 31.22 3.85
51 52 6.071320 GGCAAGTAATGAGGAATTAGGGATT 58.929 40.000 0.00 0.00 31.22 3.01
52 53 6.551227 GGCAAGTAATGAGGAATTAGGGATTT 59.449 38.462 0.00 0.00 31.22 2.17
53 54 7.428826 GCAAGTAATGAGGAATTAGGGATTTG 58.571 38.462 0.00 0.00 31.22 2.32
54 55 7.285401 GCAAGTAATGAGGAATTAGGGATTTGA 59.715 37.037 0.00 0.00 31.22 2.69
55 56 9.359653 CAAGTAATGAGGAATTAGGGATTTGAT 57.640 33.333 0.00 0.00 31.22 2.57
56 57 8.930846 AGTAATGAGGAATTAGGGATTTGATG 57.069 34.615 0.00 0.00 31.22 3.07
57 58 8.727149 AGTAATGAGGAATTAGGGATTTGATGA 58.273 33.333 0.00 0.00 31.22 2.92
58 59 9.007901 GTAATGAGGAATTAGGGATTTGATGAG 57.992 37.037 0.00 0.00 31.22 2.90
59 60 6.581388 TGAGGAATTAGGGATTTGATGAGT 57.419 37.500 0.00 0.00 0.00 3.41
60 61 6.359804 TGAGGAATTAGGGATTTGATGAGTG 58.640 40.000 0.00 0.00 0.00 3.51
61 62 5.136105 AGGAATTAGGGATTTGATGAGTGC 58.864 41.667 0.00 0.00 0.00 4.40
62 63 4.889409 GGAATTAGGGATTTGATGAGTGCA 59.111 41.667 0.00 0.00 0.00 4.57
63 64 5.360714 GGAATTAGGGATTTGATGAGTGCAA 59.639 40.000 0.00 0.00 0.00 4.08
64 65 6.460676 GGAATTAGGGATTTGATGAGTGCAAG 60.461 42.308 0.00 0.00 0.00 4.01
65 66 2.731572 AGGGATTTGATGAGTGCAAGG 58.268 47.619 0.00 0.00 0.00 3.61
66 67 1.753073 GGGATTTGATGAGTGCAAGGG 59.247 52.381 0.00 0.00 0.00 3.95
67 68 1.753073 GGATTTGATGAGTGCAAGGGG 59.247 52.381 0.00 0.00 0.00 4.79
68 69 2.621407 GGATTTGATGAGTGCAAGGGGA 60.621 50.000 0.00 0.00 0.00 4.81
69 70 2.905415 TTTGATGAGTGCAAGGGGAT 57.095 45.000 0.00 0.00 0.00 3.85
70 71 2.905415 TTGATGAGTGCAAGGGGATT 57.095 45.000 0.00 0.00 0.00 3.01
71 72 2.425143 TGATGAGTGCAAGGGGATTC 57.575 50.000 0.00 0.00 0.00 2.52
72 73 1.064463 TGATGAGTGCAAGGGGATTCC 60.064 52.381 0.00 0.00 0.00 3.01
73 74 0.107017 ATGAGTGCAAGGGGATTCCG 60.107 55.000 0.00 0.00 41.52 4.30
74 75 2.044946 AGTGCAAGGGGATTCCGC 60.045 61.111 11.68 11.68 41.52 5.54
75 76 2.361104 GTGCAAGGGGATTCCGCA 60.361 61.111 20.66 10.31 41.52 5.69
76 77 1.976474 GTGCAAGGGGATTCCGCAA 60.976 57.895 20.66 2.05 41.52 4.85
77 78 1.976474 TGCAAGGGGATTCCGCAAC 60.976 57.895 20.66 10.33 41.52 4.17
78 79 1.678970 GCAAGGGGATTCCGCAACT 60.679 57.895 20.66 3.25 41.52 3.16
79 80 1.250840 GCAAGGGGATTCCGCAACTT 61.251 55.000 20.66 8.30 41.52 2.66
80 81 0.811281 CAAGGGGATTCCGCAACTTC 59.189 55.000 20.66 0.00 41.52 3.01
81 82 0.676782 AAGGGGATTCCGCAACTTCG 60.677 55.000 20.66 0.00 41.52 3.79
86 87 3.569873 ATTCCGCAACTTCGGGATT 57.430 47.368 2.20 0.00 45.11 3.01
87 88 1.094785 ATTCCGCAACTTCGGGATTG 58.905 50.000 2.20 0.00 45.11 2.67
88 89 1.339631 ATTCCGCAACTTCGGGATTGA 60.340 47.619 2.20 0.00 45.11 2.57
89 90 2.089854 CCGCAACTTCGGGATTGAG 58.910 57.895 0.00 0.00 45.38 3.02
90 91 1.369091 CCGCAACTTCGGGATTGAGG 61.369 60.000 2.88 2.88 45.38 3.86
91 92 1.369091 CGCAACTTCGGGATTGAGGG 61.369 60.000 0.00 0.00 0.00 4.30
92 93 1.032114 GCAACTTCGGGATTGAGGGG 61.032 60.000 0.00 0.00 0.00 4.79
93 94 0.394352 CAACTTCGGGATTGAGGGGG 60.394 60.000 0.00 0.00 0.00 5.40
110 111 3.690475 GGGGGTCGACGGAAATTATAT 57.310 47.619 9.92 0.00 0.00 0.86
111 112 3.332034 GGGGGTCGACGGAAATTATATG 58.668 50.000 9.92 0.00 0.00 1.78
112 113 3.007182 GGGGGTCGACGGAAATTATATGA 59.993 47.826 9.92 0.00 0.00 2.15
113 114 4.243270 GGGGTCGACGGAAATTATATGAG 58.757 47.826 9.92 0.00 0.00 2.90
114 115 4.243270 GGGTCGACGGAAATTATATGAGG 58.757 47.826 9.92 0.00 0.00 3.86
115 116 3.678548 GGTCGACGGAAATTATATGAGGC 59.321 47.826 9.92 0.00 0.00 4.70
116 117 3.364023 GTCGACGGAAATTATATGAGGCG 59.636 47.826 0.00 0.00 0.00 5.52
117 118 2.666508 CGACGGAAATTATATGAGGCGG 59.333 50.000 0.00 0.00 0.00 6.13
118 119 2.415512 GACGGAAATTATATGAGGCGGC 59.584 50.000 0.00 0.00 0.00 6.53
119 120 1.737793 CGGAAATTATATGAGGCGGCC 59.262 52.381 12.11 12.11 0.00 6.13
120 121 2.790433 GGAAATTATATGAGGCGGCCA 58.210 47.619 23.09 0.60 0.00 5.36
121 122 3.153919 GGAAATTATATGAGGCGGCCAA 58.846 45.455 23.09 9.53 0.00 4.52
122 123 3.763897 GGAAATTATATGAGGCGGCCAAT 59.236 43.478 23.09 16.40 0.00 3.16
123 124 4.220602 GGAAATTATATGAGGCGGCCAATT 59.779 41.667 23.09 13.76 0.00 2.32
124 125 5.279456 GGAAATTATATGAGGCGGCCAATTT 60.279 40.000 23.09 20.82 0.00 1.82
125 126 6.071616 GGAAATTATATGAGGCGGCCAATTTA 60.072 38.462 23.09 10.72 0.00 1.40
126 127 5.897377 ATTATATGAGGCGGCCAATTTAC 57.103 39.130 23.09 5.68 0.00 2.01
127 128 2.719531 TATGAGGCGGCCAATTTACA 57.280 45.000 23.09 11.03 0.00 2.41
128 129 1.846007 ATGAGGCGGCCAATTTACAA 58.154 45.000 23.09 0.00 0.00 2.41
129 130 1.621992 TGAGGCGGCCAATTTACAAA 58.378 45.000 23.09 0.00 0.00 2.83
130 131 1.964223 TGAGGCGGCCAATTTACAAAA 59.036 42.857 23.09 0.00 0.00 2.44
131 132 2.365617 TGAGGCGGCCAATTTACAAAAA 59.634 40.909 23.09 0.00 0.00 1.94
132 133 3.007398 TGAGGCGGCCAATTTACAAAAAT 59.993 39.130 23.09 0.00 36.87 1.82
133 134 4.220821 TGAGGCGGCCAATTTACAAAAATA 59.779 37.500 23.09 0.00 34.12 1.40
134 135 5.153950 AGGCGGCCAATTTACAAAAATAA 57.846 34.783 23.09 0.00 34.12 1.40
135 136 4.932799 AGGCGGCCAATTTACAAAAATAAC 59.067 37.500 23.09 0.00 34.12 1.89
136 137 4.093703 GGCGGCCAATTTACAAAAATAACC 59.906 41.667 15.62 0.00 34.12 2.85
137 138 4.093703 GCGGCCAATTTACAAAAATAACCC 59.906 41.667 2.24 0.00 34.12 4.11
138 139 4.632251 CGGCCAATTTACAAAAATAACCCC 59.368 41.667 2.24 0.00 34.12 4.95
139 140 5.561679 GGCCAATTTACAAAAATAACCCCA 58.438 37.500 0.00 0.00 34.12 4.96
140 141 6.004574 GGCCAATTTACAAAAATAACCCCAA 58.995 36.000 0.00 0.00 34.12 4.12
141 142 6.150307 GGCCAATTTACAAAAATAACCCCAAG 59.850 38.462 0.00 0.00 34.12 3.61
142 143 6.348950 GCCAATTTACAAAAATAACCCCAAGC 60.349 38.462 0.00 0.00 34.12 4.01
143 144 6.712547 CCAATTTACAAAAATAACCCCAAGCA 59.287 34.615 0.00 0.00 34.12 3.91
144 145 7.229506 CCAATTTACAAAAATAACCCCAAGCAA 59.770 33.333 0.00 0.00 34.12 3.91
145 146 8.624776 CAATTTACAAAAATAACCCCAAGCAAA 58.375 29.630 0.00 0.00 34.12 3.68
146 147 8.753497 ATTTACAAAAATAACCCCAAGCAAAA 57.247 26.923 0.00 0.00 33.45 2.44
147 148 8.753497 TTTACAAAAATAACCCCAAGCAAAAT 57.247 26.923 0.00 0.00 0.00 1.82
148 149 6.631971 ACAAAAATAACCCCAAGCAAAATG 57.368 33.333 0.00 0.00 0.00 2.32
149 150 6.360618 ACAAAAATAACCCCAAGCAAAATGA 58.639 32.000 0.00 0.00 0.00 2.57
150 151 6.262049 ACAAAAATAACCCCAAGCAAAATGAC 59.738 34.615 0.00 0.00 0.00 3.06
151 152 4.551702 AATAACCCCAAGCAAAATGACC 57.448 40.909 0.00 0.00 0.00 4.02
152 153 1.055849 AACCCCAAGCAAAATGACCC 58.944 50.000 0.00 0.00 0.00 4.46
153 154 0.835971 ACCCCAAGCAAAATGACCCC 60.836 55.000 0.00 0.00 0.00 4.95
154 155 0.835543 CCCCAAGCAAAATGACCCCA 60.836 55.000 0.00 0.00 0.00 4.96
155 156 0.321346 CCCAAGCAAAATGACCCCAC 59.679 55.000 0.00 0.00 0.00 4.61
156 157 1.341080 CCAAGCAAAATGACCCCACT 58.659 50.000 0.00 0.00 0.00 4.00
157 158 1.693606 CCAAGCAAAATGACCCCACTT 59.306 47.619 0.00 0.00 0.00 3.16
158 159 2.289010 CCAAGCAAAATGACCCCACTTC 60.289 50.000 0.00 0.00 0.00 3.01
159 160 2.364970 CAAGCAAAATGACCCCACTTCA 59.635 45.455 0.00 0.00 0.00 3.02
160 161 1.963515 AGCAAAATGACCCCACTTCAC 59.036 47.619 0.00 0.00 0.00 3.18
161 162 1.963515 GCAAAATGACCCCACTTCACT 59.036 47.619 0.00 0.00 0.00 3.41
162 163 2.365293 GCAAAATGACCCCACTTCACTT 59.635 45.455 0.00 0.00 0.00 3.16
163 164 3.572255 GCAAAATGACCCCACTTCACTTA 59.428 43.478 0.00 0.00 0.00 2.24
164 165 4.220602 GCAAAATGACCCCACTTCACTTAT 59.779 41.667 0.00 0.00 0.00 1.73
165 166 5.713025 CAAAATGACCCCACTTCACTTATG 58.287 41.667 0.00 0.00 0.00 1.90
166 167 2.489938 TGACCCCACTTCACTTATGC 57.510 50.000 0.00 0.00 0.00 3.14
167 168 1.338674 TGACCCCACTTCACTTATGCG 60.339 52.381 0.00 0.00 0.00 4.73
168 169 0.035439 ACCCCACTTCACTTATGCGG 60.035 55.000 0.00 0.00 0.00 5.69
169 170 0.748005 CCCCACTTCACTTATGCGGG 60.748 60.000 0.00 0.00 0.00 6.13
170 171 1.376609 CCCACTTCACTTATGCGGGC 61.377 60.000 0.00 0.00 0.00 6.13
171 172 1.705337 CCACTTCACTTATGCGGGCG 61.705 60.000 0.00 0.00 0.00 6.13
172 173 1.019278 CACTTCACTTATGCGGGCGT 61.019 55.000 0.00 0.00 0.00 5.68
173 174 1.019278 ACTTCACTTATGCGGGCGTG 61.019 55.000 0.00 0.00 0.00 5.34
174 175 1.705337 CTTCACTTATGCGGGCGTGG 61.705 60.000 0.00 0.00 0.00 4.94
175 176 2.125310 CACTTATGCGGGCGTGGA 60.125 61.111 0.00 0.00 0.00 4.02
176 177 2.125269 ACTTATGCGGGCGTGGAC 60.125 61.111 0.00 0.00 0.00 4.02
177 178 2.186903 CTTATGCGGGCGTGGACT 59.813 61.111 0.00 0.00 0.00 3.85
178 179 1.883084 CTTATGCGGGCGTGGACTC 60.883 63.158 0.00 0.00 0.00 3.36
179 180 2.572095 CTTATGCGGGCGTGGACTCA 62.572 60.000 0.00 0.00 0.00 3.41
180 181 1.966901 TTATGCGGGCGTGGACTCAT 61.967 55.000 0.00 0.00 0.00 2.90
181 182 2.363711 TATGCGGGCGTGGACTCATC 62.364 60.000 0.00 0.00 0.00 2.92
182 183 4.148825 GCGGGCGTGGACTCATCT 62.149 66.667 0.00 0.00 0.00 2.90
183 184 2.202797 CGGGCGTGGACTCATCTG 60.203 66.667 0.00 0.00 0.00 2.90
184 185 2.710902 CGGGCGTGGACTCATCTGA 61.711 63.158 0.00 0.00 0.00 3.27
185 186 1.153549 GGGCGTGGACTCATCTGAC 60.154 63.158 0.00 0.00 0.00 3.51
186 187 1.608717 GGGCGTGGACTCATCTGACT 61.609 60.000 0.00 0.00 0.00 3.41
187 188 0.459237 GGCGTGGACTCATCTGACTG 60.459 60.000 0.00 0.00 0.00 3.51
188 189 0.459237 GCGTGGACTCATCTGACTGG 60.459 60.000 0.00 0.00 0.00 4.00
189 190 0.891373 CGTGGACTCATCTGACTGGT 59.109 55.000 0.00 0.00 0.00 4.00
190 191 1.135257 CGTGGACTCATCTGACTGGTC 60.135 57.143 0.00 0.00 0.00 4.02
191 192 1.895798 GTGGACTCATCTGACTGGTCA 59.104 52.381 3.34 3.34 38.06 4.02
192 193 2.300152 GTGGACTCATCTGACTGGTCAA 59.700 50.000 4.94 0.00 39.39 3.18
193 194 2.972021 TGGACTCATCTGACTGGTCAAA 59.028 45.455 4.94 0.00 39.39 2.69
194 195 3.244215 TGGACTCATCTGACTGGTCAAAC 60.244 47.826 4.94 0.00 39.39 2.93
195 196 3.007398 GGACTCATCTGACTGGTCAAACT 59.993 47.826 4.94 0.00 39.39 2.66
196 197 3.993081 GACTCATCTGACTGGTCAAACTG 59.007 47.826 4.94 3.49 39.39 3.16
197 198 2.740981 CTCATCTGACTGGTCAAACTGC 59.259 50.000 4.94 0.00 39.39 4.40
198 199 1.462283 CATCTGACTGGTCAAACTGCG 59.538 52.381 4.94 0.00 39.39 5.18
199 200 0.880278 TCTGACTGGTCAAACTGCGC 60.880 55.000 0.00 0.00 39.39 6.09
200 201 1.845809 CTGACTGGTCAAACTGCGCC 61.846 60.000 4.18 0.00 39.39 6.53
201 202 2.954753 GACTGGTCAAACTGCGCCG 61.955 63.158 4.18 0.00 0.00 6.46
202 203 2.664851 CTGGTCAAACTGCGCCGA 60.665 61.111 4.18 0.00 0.00 5.54
203 204 2.954753 CTGGTCAAACTGCGCCGAC 61.955 63.158 4.18 3.63 0.00 4.79
204 205 2.970324 GGTCAAACTGCGCCGACA 60.970 61.111 4.18 0.00 0.00 4.35
205 206 2.539338 GGTCAAACTGCGCCGACAA 61.539 57.895 4.18 0.00 0.00 3.18
206 207 1.082756 GTCAAACTGCGCCGACAAG 60.083 57.895 4.18 0.00 0.00 3.16
207 208 1.522806 TCAAACTGCGCCGACAAGT 60.523 52.632 4.18 0.00 0.00 3.16
208 209 1.369209 CAAACTGCGCCGACAAGTG 60.369 57.895 4.18 0.00 0.00 3.16
209 210 1.522806 AAACTGCGCCGACAAGTGA 60.523 52.632 4.18 0.00 0.00 3.41
210 211 1.772063 AAACTGCGCCGACAAGTGAC 61.772 55.000 4.18 0.00 0.00 3.67
211 212 2.661537 CTGCGCCGACAAGTGACA 60.662 61.111 4.18 0.00 0.00 3.58
212 213 2.029288 CTGCGCCGACAAGTGACAT 61.029 57.895 4.18 0.00 0.00 3.06
213 214 2.231745 CTGCGCCGACAAGTGACATG 62.232 60.000 4.18 0.00 0.00 3.21
214 215 2.476051 CGCCGACAAGTGACATGC 59.524 61.111 0.00 0.00 0.00 4.06
215 216 2.476051 GCCGACAAGTGACATGCG 59.524 61.111 0.00 0.00 0.00 4.73
216 217 2.476051 CCGACAAGTGACATGCGC 59.524 61.111 0.00 0.00 0.00 6.09
217 218 2.094539 CGACAAGTGACATGCGCG 59.905 61.111 0.00 0.00 0.00 6.86
218 219 2.476051 GACAAGTGACATGCGCGG 59.524 61.111 8.83 0.00 0.00 6.46
219 220 2.027073 GACAAGTGACATGCGCGGA 61.027 57.895 8.83 5.00 0.00 5.54
220 221 1.565156 GACAAGTGACATGCGCGGAA 61.565 55.000 3.18 0.00 0.00 4.30
221 222 1.154413 CAAGTGACATGCGCGGAAC 60.154 57.895 3.18 0.00 0.00 3.62
222 223 1.596752 AAGTGACATGCGCGGAACA 60.597 52.632 3.18 2.48 0.00 3.18
223 224 1.568612 AAGTGACATGCGCGGAACAG 61.569 55.000 3.18 0.00 0.00 3.16
224 225 2.030412 TGACATGCGCGGAACAGT 59.970 55.556 3.18 3.44 0.00 3.55
225 226 2.316867 TGACATGCGCGGAACAGTG 61.317 57.895 3.18 0.00 0.00 3.66
226 227 2.027073 GACATGCGCGGAACAGTGA 61.027 57.895 3.18 0.00 0.00 3.41
227 228 2.227968 GACATGCGCGGAACAGTGAC 62.228 60.000 3.18 0.00 0.00 3.67
228 229 2.742372 ATGCGCGGAACAGTGACC 60.742 61.111 3.18 0.00 0.00 4.02
235 236 2.649331 CGGAACAGTGACCGTAGAAT 57.351 50.000 19.43 0.00 43.53 2.40
236 237 2.527100 CGGAACAGTGACCGTAGAATC 58.473 52.381 19.43 0.00 43.53 2.52
237 238 2.094906 CGGAACAGTGACCGTAGAATCA 60.095 50.000 19.43 0.00 43.53 2.57
238 239 3.251571 GGAACAGTGACCGTAGAATCAC 58.748 50.000 0.00 0.00 41.61 3.06
239 240 2.631418 ACAGTGACCGTAGAATCACG 57.369 50.000 0.00 0.00 44.47 4.35
240 241 1.884579 ACAGTGACCGTAGAATCACGT 59.115 47.619 0.00 0.00 44.47 4.49
241 242 2.295349 ACAGTGACCGTAGAATCACGTT 59.705 45.455 0.00 0.00 44.47 3.99
242 243 2.915463 CAGTGACCGTAGAATCACGTTC 59.085 50.000 0.00 1.67 44.47 3.95
244 245 2.915463 GTGACCGTAGAATCACGTTCTG 59.085 50.000 0.00 0.00 46.50 3.02
245 246 2.555325 TGACCGTAGAATCACGTTCTGT 59.445 45.455 0.00 0.00 46.50 3.41
246 247 3.005050 TGACCGTAGAATCACGTTCTGTT 59.995 43.478 0.00 0.00 46.50 3.16
247 248 4.216042 TGACCGTAGAATCACGTTCTGTTA 59.784 41.667 0.00 0.00 46.50 2.41
248 249 4.479619 ACCGTAGAATCACGTTCTGTTAC 58.520 43.478 0.00 0.00 46.50 2.50
249 250 4.022935 ACCGTAGAATCACGTTCTGTTACA 60.023 41.667 0.00 0.00 46.50 2.41
250 251 4.322804 CCGTAGAATCACGTTCTGTTACAC 59.677 45.833 0.00 0.00 46.50 2.90
251 252 4.913345 CGTAGAATCACGTTCTGTTACACA 59.087 41.667 0.00 0.00 46.50 3.72
252 253 5.571741 CGTAGAATCACGTTCTGTTACACAT 59.428 40.000 0.00 0.00 46.50 3.21
253 254 5.845985 AGAATCACGTTCTGTTACACATG 57.154 39.130 0.00 0.00 45.38 3.21
254 255 4.690748 AGAATCACGTTCTGTTACACATGG 59.309 41.667 0.00 0.00 45.38 3.66
255 256 2.139917 TCACGTTCTGTTACACATGGC 58.860 47.619 0.00 0.00 0.00 4.40
256 257 1.136363 CACGTTCTGTTACACATGGCG 60.136 52.381 0.00 0.00 0.00 5.69
257 258 1.269883 ACGTTCTGTTACACATGGCGA 60.270 47.619 0.00 0.00 0.00 5.54
258 259 1.999735 CGTTCTGTTACACATGGCGAT 59.000 47.619 0.00 0.00 0.00 4.58
259 260 2.415168 CGTTCTGTTACACATGGCGATT 59.585 45.455 0.00 0.00 0.00 3.34
260 261 3.724716 CGTTCTGTTACACATGGCGATTG 60.725 47.826 0.00 0.00 0.00 2.67
261 262 3.052455 TCTGTTACACATGGCGATTGT 57.948 42.857 0.00 0.00 0.00 2.71
262 263 4.195225 TCTGTTACACATGGCGATTGTA 57.805 40.909 0.00 0.00 0.00 2.41
263 264 4.765273 TCTGTTACACATGGCGATTGTAT 58.235 39.130 0.00 0.00 0.00 2.29
264 265 5.182487 TCTGTTACACATGGCGATTGTATT 58.818 37.500 0.00 0.00 0.00 1.89
265 266 5.064579 TCTGTTACACATGGCGATTGTATTG 59.935 40.000 0.00 0.00 0.00 1.90
266 267 4.095632 TGTTACACATGGCGATTGTATTGG 59.904 41.667 0.00 0.00 0.00 3.16
267 268 1.405105 ACACATGGCGATTGTATTGGC 59.595 47.619 0.00 0.00 39.54 4.52
268 269 1.032014 ACATGGCGATTGTATTGGCC 58.968 50.000 0.00 0.00 45.76 5.36
270 271 3.821995 GGCGATTGTATTGGCCGT 58.178 55.556 0.00 0.00 35.59 5.68
271 272 2.994990 GGCGATTGTATTGGCCGTA 58.005 52.632 0.00 0.00 35.59 4.02
272 273 1.519408 GGCGATTGTATTGGCCGTAT 58.481 50.000 0.00 0.00 35.59 3.06
273 274 1.877443 GGCGATTGTATTGGCCGTATT 59.123 47.619 0.00 0.00 35.59 1.89
274 275 2.095919 GGCGATTGTATTGGCCGTATTC 60.096 50.000 0.00 0.00 35.59 1.75
275 276 2.095919 GCGATTGTATTGGCCGTATTCC 60.096 50.000 0.00 0.00 0.00 3.01
276 277 3.399330 CGATTGTATTGGCCGTATTCCT 58.601 45.455 0.00 0.00 0.00 3.36
277 278 3.186409 CGATTGTATTGGCCGTATTCCTG 59.814 47.826 0.00 0.00 0.00 3.86
278 279 3.916359 TTGTATTGGCCGTATTCCTGA 57.084 42.857 0.00 0.00 0.00 3.86
279 280 3.469008 TGTATTGGCCGTATTCCTGAG 57.531 47.619 0.00 0.00 0.00 3.35
280 281 2.143925 GTATTGGCCGTATTCCTGAGC 58.856 52.381 0.00 0.00 0.00 4.26
281 282 0.546122 ATTGGCCGTATTCCTGAGCA 59.454 50.000 0.00 0.00 0.00 4.26
282 283 0.546122 TTGGCCGTATTCCTGAGCAT 59.454 50.000 0.00 0.00 0.00 3.79
283 284 0.179048 TGGCCGTATTCCTGAGCATG 60.179 55.000 0.00 0.00 0.00 4.06
284 285 0.106708 GGCCGTATTCCTGAGCATGA 59.893 55.000 0.00 0.00 0.00 3.07
285 286 1.271054 GGCCGTATTCCTGAGCATGAT 60.271 52.381 0.00 0.00 0.00 2.45
286 287 1.802960 GCCGTATTCCTGAGCATGATG 59.197 52.381 0.00 0.00 0.00 3.07
287 288 2.548707 GCCGTATTCCTGAGCATGATGA 60.549 50.000 0.00 0.00 0.00 2.92
288 289 3.062763 CCGTATTCCTGAGCATGATGAC 58.937 50.000 0.00 0.00 0.00 3.06
289 290 3.493176 CCGTATTCCTGAGCATGATGACA 60.493 47.826 0.00 0.00 0.00 3.58
290 291 4.122046 CGTATTCCTGAGCATGATGACAA 58.878 43.478 0.00 0.00 0.00 3.18
291 292 4.571984 CGTATTCCTGAGCATGATGACAAA 59.428 41.667 0.00 0.00 0.00 2.83
292 293 5.065090 CGTATTCCTGAGCATGATGACAAAA 59.935 40.000 0.00 0.00 0.00 2.44
293 294 5.578005 ATTCCTGAGCATGATGACAAAAG 57.422 39.130 0.00 0.00 0.00 2.27
294 295 4.025040 TCCTGAGCATGATGACAAAAGT 57.975 40.909 0.00 0.00 0.00 2.66
295 296 3.754850 TCCTGAGCATGATGACAAAAGTG 59.245 43.478 0.00 0.00 0.00 3.16
296 297 3.754850 CCTGAGCATGATGACAAAAGTGA 59.245 43.478 0.00 0.00 0.00 3.41
297 298 4.142665 CCTGAGCATGATGACAAAAGTGAG 60.143 45.833 0.00 0.00 0.00 3.51
298 299 3.754850 TGAGCATGATGACAAAAGTGAGG 59.245 43.478 0.00 0.00 0.00 3.86
299 300 3.755378 GAGCATGATGACAAAAGTGAGGT 59.245 43.478 0.00 0.00 0.00 3.85
300 301 4.147321 AGCATGATGACAAAAGTGAGGTT 58.853 39.130 0.00 0.00 0.00 3.50
301 302 4.586001 AGCATGATGACAAAAGTGAGGTTT 59.414 37.500 0.00 0.00 0.00 3.27
302 303 4.919754 GCATGATGACAAAAGTGAGGTTTC 59.080 41.667 0.00 0.00 0.00 2.78
303 304 5.278660 GCATGATGACAAAAGTGAGGTTTCT 60.279 40.000 0.00 0.00 0.00 2.52
304 305 6.736794 GCATGATGACAAAAGTGAGGTTTCTT 60.737 38.462 0.00 0.00 0.00 2.52
305 306 6.377327 TGATGACAAAAGTGAGGTTTCTTC 57.623 37.500 0.00 0.00 0.00 2.87
306 307 4.875544 TGACAAAAGTGAGGTTTCTTCG 57.124 40.909 0.00 0.00 0.00 3.79
307 308 3.064820 TGACAAAAGTGAGGTTTCTTCGC 59.935 43.478 0.00 0.00 0.00 4.70
308 309 2.031683 ACAAAAGTGAGGTTTCTTCGCG 59.968 45.455 0.00 0.00 0.00 5.87
309 310 2.234300 AAAGTGAGGTTTCTTCGCGA 57.766 45.000 3.71 3.71 0.00 5.87
310 311 1.784525 AAGTGAGGTTTCTTCGCGAG 58.215 50.000 9.59 3.89 0.00 5.03
311 312 0.674534 AGTGAGGTTTCTTCGCGAGT 59.325 50.000 9.59 0.00 0.00 4.18
312 313 1.068741 AGTGAGGTTTCTTCGCGAGTT 59.931 47.619 9.59 0.00 0.00 3.01
313 314 1.456165 GTGAGGTTTCTTCGCGAGTTC 59.544 52.381 9.59 1.56 0.00 3.01
314 315 0.708918 GAGGTTTCTTCGCGAGTTCG 59.291 55.000 9.59 0.00 43.27 3.95
315 316 0.666577 AGGTTTCTTCGCGAGTTCGG 60.667 55.000 9.59 0.00 40.23 4.30
316 317 0.942884 GGTTTCTTCGCGAGTTCGGT 60.943 55.000 9.59 0.00 40.23 4.69
317 318 0.161024 GTTTCTTCGCGAGTTCGGTG 59.839 55.000 9.59 0.00 40.23 4.94
318 319 0.031043 TTTCTTCGCGAGTTCGGTGA 59.969 50.000 9.59 0.00 40.23 4.02
319 320 0.242825 TTCTTCGCGAGTTCGGTGAT 59.757 50.000 9.59 0.00 40.23 3.06
320 321 0.242825 TCTTCGCGAGTTCGGTGATT 59.757 50.000 9.59 0.00 40.23 2.57
321 322 0.366871 CTTCGCGAGTTCGGTGATTG 59.633 55.000 9.59 0.00 40.23 2.67
322 323 1.623081 TTCGCGAGTTCGGTGATTGC 61.623 55.000 9.59 0.00 40.23 3.56
323 324 2.785258 GCGAGTTCGGTGATTGCC 59.215 61.111 3.50 0.00 40.23 4.52
324 325 2.032634 GCGAGTTCGGTGATTGCCA 61.033 57.895 3.50 0.00 40.23 4.92
325 326 1.573829 GCGAGTTCGGTGATTGCCAA 61.574 55.000 3.50 0.00 40.23 4.52
326 327 1.086696 CGAGTTCGGTGATTGCCAAT 58.913 50.000 0.00 0.00 35.37 3.16
327 328 1.202065 CGAGTTCGGTGATTGCCAATG 60.202 52.381 0.00 0.00 35.37 2.82
328 329 0.527565 AGTTCGGTGATTGCCAATGC 59.472 50.000 0.00 0.00 38.26 3.56
342 343 5.402997 TGCCAATGCATTTTACTCATTGA 57.597 34.783 9.83 0.00 45.87 2.57
343 344 5.791666 TGCCAATGCATTTTACTCATTGAA 58.208 33.333 9.83 2.04 45.87 2.69
344 345 6.228995 TGCCAATGCATTTTACTCATTGAAA 58.771 32.000 9.83 1.75 45.87 2.69
345 346 6.879993 TGCCAATGCATTTTACTCATTGAAAT 59.120 30.769 9.83 0.00 45.87 2.17
346 347 7.390996 TGCCAATGCATTTTACTCATTGAAATT 59.609 29.630 9.83 0.00 45.87 1.82
347 348 8.881743 GCCAATGCATTTTACTCATTGAAATTA 58.118 29.630 9.83 0.00 45.87 1.40
351 352 8.755696 TGCATTTTACTCATTGAAATTACACC 57.244 30.769 0.00 0.00 0.00 4.16
352 353 7.540400 TGCATTTTACTCATTGAAATTACACCG 59.460 33.333 0.00 0.00 0.00 4.94
353 354 7.753132 GCATTTTACTCATTGAAATTACACCGA 59.247 33.333 0.00 0.00 0.00 4.69
354 355 9.061610 CATTTTACTCATTGAAATTACACCGAC 57.938 33.333 0.00 0.00 0.00 4.79
355 356 6.730960 TTACTCATTGAAATTACACCGACC 57.269 37.500 0.00 0.00 0.00 4.79
356 357 4.007659 ACTCATTGAAATTACACCGACCC 58.992 43.478 0.00 0.00 0.00 4.46
357 358 4.261801 CTCATTGAAATTACACCGACCCT 58.738 43.478 0.00 0.00 0.00 4.34
358 359 4.258543 TCATTGAAATTACACCGACCCTC 58.741 43.478 0.00 0.00 0.00 4.30
359 360 2.373540 TGAAATTACACCGACCCTCG 57.626 50.000 0.00 0.00 40.07 4.63
360 361 1.619827 TGAAATTACACCGACCCTCGT 59.380 47.619 0.00 0.00 38.40 4.18
361 362 2.824936 TGAAATTACACCGACCCTCGTA 59.175 45.455 0.00 0.00 38.40 3.43
362 363 3.257873 TGAAATTACACCGACCCTCGTAA 59.742 43.478 0.00 0.00 38.40 3.18
363 364 3.959535 AATTACACCGACCCTCGTAAA 57.040 42.857 0.00 0.00 38.40 2.01
364 365 2.723124 TTACACCGACCCTCGTAAAC 57.277 50.000 0.00 0.00 38.40 2.01
365 366 0.521291 TACACCGACCCTCGTAAACG 59.479 55.000 0.00 0.00 38.40 3.60
383 384 8.657729 TCGTAAACGATGTATTGCTTATTTTCA 58.342 29.630 0.14 0.00 44.22 2.69
384 385 9.268255 CGTAAACGATGTATTGCTTATTTTCAA 57.732 29.630 0.00 0.00 43.02 2.69
387 388 9.853555 AAACGATGTATTGCTTATTTTCAATGA 57.146 25.926 0.00 0.00 34.95 2.57
388 389 9.853555 AACGATGTATTGCTTATTTTCAATGAA 57.146 25.926 0.00 0.00 34.95 2.57
403 404 8.934507 TTTTCAATGAATAAAACTTCGGTGTT 57.065 26.923 0.00 0.00 0.00 3.32
404 405 8.934507 TTTCAATGAATAAAACTTCGGTGTTT 57.065 26.923 0.00 1.83 41.32 2.83
406 407 8.934507 TCAATGAATAAAACTTCGGTGTTTTT 57.065 26.923 18.89 7.43 44.65 1.94
439 440 8.893219 AAGAAAAACTGAAATTCCTGAATTCC 57.107 30.769 2.27 0.00 39.88 3.01
440 441 8.255111 AGAAAAACTGAAATTCCTGAATTCCT 57.745 30.769 2.27 0.00 39.88 3.36
441 442 8.708378 AGAAAAACTGAAATTCCTGAATTCCTT 58.292 29.630 2.27 0.00 39.88 3.36
442 443 9.330063 GAAAAACTGAAATTCCTGAATTCCTTT 57.670 29.630 2.27 0.00 39.88 3.11
443 444 9.685276 AAAAACTGAAATTCCTGAATTCCTTTT 57.315 25.926 2.27 5.22 39.88 2.27
444 445 9.685276 AAAACTGAAATTCCTGAATTCCTTTTT 57.315 25.926 2.27 6.86 39.88 1.94
505 512 5.581085 AGATCGACCGTTATTCTGGAAAAAG 59.419 40.000 0.00 0.00 0.00 2.27
506 513 4.885413 TCGACCGTTATTCTGGAAAAAGA 58.115 39.130 0.00 0.00 0.00 2.52
522 529 6.037726 GGAAAAAGAAAGAAAACACCGCTAA 58.962 36.000 0.00 0.00 0.00 3.09
559 568 1.527370 GCCGGCCATAGTCCTCTTT 59.473 57.895 18.11 0.00 0.00 2.52
560 569 0.756903 GCCGGCCATAGTCCTCTTTA 59.243 55.000 18.11 0.00 0.00 1.85
572 582 8.432805 CCATAGTCCTCTTTATCTACAACCATT 58.567 37.037 0.00 0.00 0.00 3.16
573 585 9.838339 CATAGTCCTCTTTATCTACAACCATTT 57.162 33.333 0.00 0.00 0.00 2.32
758 793 2.270874 CTTCCCCCTCCCCAACGATG 62.271 65.000 0.00 0.00 0.00 3.84
760 795 3.727258 CCCCTCCCCAACGATGCA 61.727 66.667 0.00 0.00 0.00 3.96
762 797 2.046285 CCCTCCCCAACGATGCAAC 61.046 63.158 0.00 0.00 0.00 4.17
903 977 0.921896 CATTCCCCCACTCACTCCAT 59.078 55.000 0.00 0.00 0.00 3.41
931 1005 3.258622 CCTCCTCTTTTACTTGGTCTCGT 59.741 47.826 0.00 0.00 0.00 4.18
944 1018 3.432588 CTCGTCTCGCCGTCCACT 61.433 66.667 0.00 0.00 0.00 4.00
2071 2226 3.851128 GGCTCCTCCAGGTACGCC 61.851 72.222 7.32 7.32 37.12 5.68
2122 2290 2.237392 ACTAGCTTCCAGACCATCAACC 59.763 50.000 0.00 0.00 0.00 3.77
2189 2366 8.932791 GGTACCAAATCGATGATTAATAATCGT 58.067 33.333 27.08 15.93 44.63 3.73
2341 2522 3.083997 AAGAAGCCGCGGATCCCT 61.084 61.111 33.48 21.06 0.00 4.20
2412 2599 4.589675 GTTCCCGCCCAACCACCA 62.590 66.667 0.00 0.00 0.00 4.17
2434 2621 2.515398 CACCACCAGCAGGACCAA 59.485 61.111 0.35 0.00 38.69 3.67
2714 2904 1.733041 CGCGCTCCGACAAAGAAGA 60.733 57.895 5.56 0.00 40.02 2.87
2715 2905 1.282248 CGCGCTCCGACAAAGAAGAA 61.282 55.000 5.56 0.00 40.02 2.52
2716 2906 0.440371 GCGCTCCGACAAAGAAGAAG 59.560 55.000 0.00 0.00 0.00 2.85
2718 2908 0.799393 GCTCCGACAAAGAAGAAGGC 59.201 55.000 0.00 0.00 0.00 4.35
2887 3077 4.388499 GCGCCCAACCTCTCGGAA 62.388 66.667 0.00 0.00 0.00 4.30
3095 3291 0.520404 GTCGTTCGAGGAGCTGTACA 59.480 55.000 0.00 0.00 0.00 2.90
3106 3302 3.799753 CTGTACAGCCGCATGTCC 58.200 61.111 10.54 0.00 34.56 4.02
3205 3401 1.372087 GCGATGAGCCTTTCAGGTGG 61.372 60.000 0.00 0.00 39.68 4.61
3212 3408 2.270986 CCTTTCAGGTGGGCAGCAC 61.271 63.158 0.00 0.00 0.00 4.40
3213 3409 1.228367 CTTTCAGGTGGGCAGCACT 60.228 57.895 0.00 0.00 0.00 4.40
3214 3410 0.825010 CTTTCAGGTGGGCAGCACTT 60.825 55.000 0.00 0.00 0.00 3.16
3215 3411 0.396974 TTTCAGGTGGGCAGCACTTT 60.397 50.000 0.00 0.00 0.00 2.66
3216 3412 0.476338 TTCAGGTGGGCAGCACTTTA 59.524 50.000 0.00 0.00 0.00 1.85
3218 3414 1.075374 TCAGGTGGGCAGCACTTTAAT 59.925 47.619 0.00 0.00 0.00 1.40
3219 3415 1.203052 CAGGTGGGCAGCACTTTAATG 59.797 52.381 0.00 0.00 0.00 1.90
3220 3416 1.203050 AGGTGGGCAGCACTTTAATGT 60.203 47.619 0.00 0.00 0.00 2.71
3230 3434 5.400485 GCAGCACTTTAATGTCACTTGAAAG 59.600 40.000 0.00 0.00 34.11 2.62
3261 3465 7.905604 TCACTCGTTATGAATGAATTCTTGT 57.094 32.000 7.05 0.00 37.67 3.16
3267 3471 7.022979 CGTTATGAATGAATTCTTGTGCTGAA 58.977 34.615 7.05 0.00 37.67 3.02
3269 3473 9.195411 GTTATGAATGAATTCTTGTGCTGAAAA 57.805 29.630 7.05 0.00 37.67 2.29
3270 3474 9.761504 TTATGAATGAATTCTTGTGCTGAAAAA 57.238 25.926 7.05 0.00 37.67 1.94
3271 3475 7.467557 TGAATGAATTCTTGTGCTGAAAAAC 57.532 32.000 7.05 0.00 37.67 2.43
3357 3561 4.857251 GACAACATCGGGGGCTAG 57.143 61.111 0.00 0.00 0.00 3.42
3361 3565 0.179045 CAACATCGGGGGCTAGGAAG 60.179 60.000 0.00 0.00 0.00 3.46
3372 3576 1.282157 GGCTAGGAAGGAAGGAAGCAA 59.718 52.381 0.00 0.00 0.00 3.91
3413 3619 2.229690 TAACTTAGGTCGCCGGCCAC 62.230 60.000 23.46 19.96 0.00 5.01
3426 3632 1.761174 GGCCACTCCAAGTCCTCAA 59.239 57.895 0.00 0.00 34.01 3.02
3451 3658 2.226269 GCAATAAGCCGGACTAGCG 58.774 57.895 5.05 0.00 37.23 4.26
3452 3659 1.832411 GCAATAAGCCGGACTAGCGC 61.832 60.000 5.05 0.00 37.23 5.92
3453 3660 1.069258 AATAAGCCGGACTAGCGCC 59.931 57.895 5.05 0.00 34.64 6.53
3454 3661 1.682451 AATAAGCCGGACTAGCGCCA 61.682 55.000 5.05 0.00 34.64 5.69
3461 3668 2.443390 GACTAGCGCCACCCCCTA 60.443 66.667 2.29 0.00 0.00 3.53
3491 3698 1.406539 CTGAACTGCAAGCTGTGGTTT 59.593 47.619 5.34 0.00 37.60 3.27
3492 3699 1.824230 TGAACTGCAAGCTGTGGTTTT 59.176 42.857 5.34 0.00 37.60 2.43
3528 3746 5.059404 TCATTTCCCTTTCATTTTCTCGC 57.941 39.130 0.00 0.00 0.00 5.03
3587 3805 4.648626 GGCAGCAGCACCACTCCA 62.649 66.667 2.65 0.00 44.61 3.86
3609 3827 3.054802 ACTCTGGACACCTTTCATGATCC 60.055 47.826 0.00 0.00 0.00 3.36
3610 3828 2.239654 TCTGGACACCTTTCATGATCCC 59.760 50.000 8.04 0.00 0.00 3.85
3612 3830 1.566231 GGACACCTTTCATGATCCCCT 59.434 52.381 0.00 0.00 0.00 4.79
3613 3831 2.648059 GACACCTTTCATGATCCCCTG 58.352 52.381 0.00 0.00 0.00 4.45
3616 3834 0.107017 CCTTTCATGATCCCCTGCGT 60.107 55.000 0.00 0.00 0.00 5.24
3618 3836 2.213499 CTTTCATGATCCCCTGCGTAC 58.787 52.381 0.00 0.00 0.00 3.67
3620 3838 1.956170 CATGATCCCCTGCGTACGC 60.956 63.158 32.49 32.49 42.35 4.42
3621 3839 2.134287 ATGATCCCCTGCGTACGCT 61.134 57.895 36.99 19.03 42.51 5.07
3708 4214 2.124193 TCCTCCATGCCATTGCCG 60.124 61.111 0.00 0.00 36.33 5.69
3729 4235 2.979676 CCTTTGCTCGCAGTGGCA 60.980 61.111 0.00 0.00 41.24 4.92
3888 4406 1.101049 AACCCATTATTCCCTGCGCG 61.101 55.000 0.00 0.00 0.00 6.86
3896 4414 0.750850 ATTCCCTGCGCGTATACTGT 59.249 50.000 8.43 0.00 0.00 3.55
3956 4487 3.195396 TCCTTTTTGCACTGCTGAAAACT 59.805 39.130 1.98 0.00 0.00 2.66
3989 4520 4.508128 CCACCGGCGCACGTATCT 62.508 66.667 10.83 0.00 42.24 1.98
4001 4532 2.543031 GCACGTATCTGCGATCCTGTTA 60.543 50.000 0.00 0.00 35.59 2.41
4033 4570 1.441732 GGTGTTTTGCGTCCTCCGTT 61.442 55.000 0.00 0.00 39.32 4.44
4035 4572 0.745128 TGTTTTGCGTCCTCCGTTGT 60.745 50.000 0.00 0.00 39.32 3.32
4044 4581 2.921754 CGTCCTCCGTTGTTCTTATCAC 59.078 50.000 0.00 0.00 0.00 3.06
4065 4602 3.847621 CGTCGTCGCCTATCTGAAT 57.152 52.632 0.00 0.00 0.00 2.57
4110 4656 1.893801 GTAGACTGCACCCTGTACAGT 59.106 52.381 21.18 1.77 42.10 3.55
4112 4658 1.070758 AGACTGCACCCTGTACAGTTG 59.929 52.381 21.18 17.50 39.86 3.16
4130 4678 2.508439 CAATACGTGCTCGGCCGT 60.508 61.111 27.15 7.03 41.85 5.68
4146 4694 3.618750 GTGGGGTTGGACCGACGA 61.619 66.667 5.75 0.00 39.83 4.20
4168 4716 2.434359 CGTTGGCCGGAAGAGGTC 60.434 66.667 5.05 0.00 36.18 3.85
4170 4718 1.671379 GTTGGCCGGAAGAGGTCAC 60.671 63.158 5.05 0.00 46.85 3.67
4175 4723 3.998156 CGGAAGAGGTCACGGAGA 58.002 61.111 0.00 0.00 0.00 3.71
4176 4724 2.264124 CGGAAGAGGTCACGGAGAA 58.736 57.895 0.00 0.00 0.00 2.87
4178 4726 0.533032 GGAAGAGGTCACGGAGAAGG 59.467 60.000 0.00 0.00 0.00 3.46
4179 4727 0.108567 GAAGAGGTCACGGAGAAGGC 60.109 60.000 0.00 0.00 0.00 4.35
4180 4728 1.545706 AAGAGGTCACGGAGAAGGCC 61.546 60.000 0.00 0.00 0.00 5.19
4181 4729 1.985116 GAGGTCACGGAGAAGGCCT 60.985 63.158 0.00 0.00 42.85 5.19
4189 4737 3.839432 GAGAAGGCCTCCGTCCCG 61.839 72.222 5.23 0.00 35.87 5.14
4199 4747 4.675029 CCGTCCCGTCAGCCGTTT 62.675 66.667 0.00 0.00 33.66 3.60
4200 4748 3.411351 CGTCCCGTCAGCCGTTTG 61.411 66.667 0.00 0.00 33.66 2.93
4201 4749 3.047877 GTCCCGTCAGCCGTTTGG 61.048 66.667 0.00 0.00 38.77 3.28
4202 4750 4.323477 TCCCGTCAGCCGTTTGGG 62.323 66.667 0.00 0.00 41.43 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.986575 GCCGCTTTGGAGCTAGCTTG 61.987 60.000 20.42 8.29 46.96 4.01
3 4 2.124942 GCCGCTTTGGAGCTAGCT 60.125 61.111 19.45 19.45 46.96 3.32
4 5 3.567797 CGCCGCTTTGGAGCTAGC 61.568 66.667 6.62 6.62 46.96 3.42
5 6 2.167861 GTCGCCGCTTTGGAGCTAG 61.168 63.158 0.00 0.00 46.96 3.42
6 7 2.125673 GTCGCCGCTTTGGAGCTA 60.126 61.111 0.00 0.00 46.96 3.32
7 8 3.825160 TTGTCGCCGCTTTGGAGCT 62.825 57.895 0.00 0.00 46.96 4.09
8 9 2.690778 ATTGTCGCCGCTTTGGAGC 61.691 57.895 0.00 0.00 45.65 4.70
9 10 1.135315 CATTGTCGCCGCTTTGGAG 59.865 57.895 0.00 0.00 42.00 3.86
10 11 2.331893 CCATTGTCGCCGCTTTGGA 61.332 57.895 0.00 0.00 42.00 3.53
11 12 2.179018 CCATTGTCGCCGCTTTGG 59.821 61.111 0.00 0.00 42.50 3.28
12 13 2.504681 GCCATTGTCGCCGCTTTG 60.505 61.111 0.00 0.00 0.00 2.77
13 14 2.476534 CTTGCCATTGTCGCCGCTTT 62.477 55.000 0.00 0.00 0.00 3.51
14 15 2.981560 CTTGCCATTGTCGCCGCTT 61.982 57.895 0.00 0.00 0.00 4.68
15 16 2.796483 TACTTGCCATTGTCGCCGCT 62.796 55.000 0.00 0.00 0.00 5.52
16 17 1.917782 TTACTTGCCATTGTCGCCGC 61.918 55.000 0.00 0.00 0.00 6.53
17 18 0.732571 ATTACTTGCCATTGTCGCCG 59.267 50.000 0.00 0.00 0.00 6.46
18 19 1.742831 TCATTACTTGCCATTGTCGCC 59.257 47.619 0.00 0.00 0.00 5.54
19 20 2.223340 CCTCATTACTTGCCATTGTCGC 60.223 50.000 0.00 0.00 0.00 5.19
20 21 3.270027 TCCTCATTACTTGCCATTGTCG 58.730 45.455 0.00 0.00 0.00 4.35
21 22 5.841957 ATTCCTCATTACTTGCCATTGTC 57.158 39.130 0.00 0.00 0.00 3.18
22 23 6.322201 CCTAATTCCTCATTACTTGCCATTGT 59.678 38.462 0.00 0.00 0.00 2.71
23 24 6.239120 CCCTAATTCCTCATTACTTGCCATTG 60.239 42.308 0.00 0.00 0.00 2.82
24 25 5.835280 CCCTAATTCCTCATTACTTGCCATT 59.165 40.000 0.00 0.00 0.00 3.16
25 26 5.134339 TCCCTAATTCCTCATTACTTGCCAT 59.866 40.000 0.00 0.00 0.00 4.40
26 27 4.476846 TCCCTAATTCCTCATTACTTGCCA 59.523 41.667 0.00 0.00 0.00 4.92
27 28 5.048846 TCCCTAATTCCTCATTACTTGCC 57.951 43.478 0.00 0.00 0.00 4.52
28 29 7.285401 TCAAATCCCTAATTCCTCATTACTTGC 59.715 37.037 0.00 0.00 0.00 4.01
29 30 8.752005 TCAAATCCCTAATTCCTCATTACTTG 57.248 34.615 0.00 0.00 0.00 3.16
30 31 9.359653 CATCAAATCCCTAATTCCTCATTACTT 57.640 33.333 0.00 0.00 0.00 2.24
31 32 8.727149 TCATCAAATCCCTAATTCCTCATTACT 58.273 33.333 0.00 0.00 0.00 2.24
32 33 8.924511 TCATCAAATCCCTAATTCCTCATTAC 57.075 34.615 0.00 0.00 0.00 1.89
33 34 8.727149 ACTCATCAAATCCCTAATTCCTCATTA 58.273 33.333 0.00 0.00 0.00 1.90
34 35 7.504911 CACTCATCAAATCCCTAATTCCTCATT 59.495 37.037 0.00 0.00 0.00 2.57
35 36 7.002879 CACTCATCAAATCCCTAATTCCTCAT 58.997 38.462 0.00 0.00 0.00 2.90
36 37 6.359804 CACTCATCAAATCCCTAATTCCTCA 58.640 40.000 0.00 0.00 0.00 3.86
37 38 5.240403 GCACTCATCAAATCCCTAATTCCTC 59.760 44.000 0.00 0.00 0.00 3.71
38 39 5.136105 GCACTCATCAAATCCCTAATTCCT 58.864 41.667 0.00 0.00 0.00 3.36
39 40 4.889409 TGCACTCATCAAATCCCTAATTCC 59.111 41.667 0.00 0.00 0.00 3.01
40 41 6.455360 TTGCACTCATCAAATCCCTAATTC 57.545 37.500 0.00 0.00 0.00 2.17
41 42 5.361857 CCTTGCACTCATCAAATCCCTAATT 59.638 40.000 0.00 0.00 0.00 1.40
42 43 4.891756 CCTTGCACTCATCAAATCCCTAAT 59.108 41.667 0.00 0.00 0.00 1.73
43 44 4.272489 CCTTGCACTCATCAAATCCCTAA 58.728 43.478 0.00 0.00 0.00 2.69
44 45 3.371917 CCCTTGCACTCATCAAATCCCTA 60.372 47.826 0.00 0.00 0.00 3.53
45 46 2.622452 CCCTTGCACTCATCAAATCCCT 60.622 50.000 0.00 0.00 0.00 4.20
46 47 1.753073 CCCTTGCACTCATCAAATCCC 59.247 52.381 0.00 0.00 0.00 3.85
47 48 1.753073 CCCCTTGCACTCATCAAATCC 59.247 52.381 0.00 0.00 0.00 3.01
48 49 2.726821 TCCCCTTGCACTCATCAAATC 58.273 47.619 0.00 0.00 0.00 2.17
49 50 2.905415 TCCCCTTGCACTCATCAAAT 57.095 45.000 0.00 0.00 0.00 2.32
50 51 2.905415 ATCCCCTTGCACTCATCAAA 57.095 45.000 0.00 0.00 0.00 2.69
51 52 2.621407 GGAATCCCCTTGCACTCATCAA 60.621 50.000 0.00 0.00 0.00 2.57
52 53 1.064463 GGAATCCCCTTGCACTCATCA 60.064 52.381 0.00 0.00 0.00 3.07
53 54 1.685148 GGAATCCCCTTGCACTCATC 58.315 55.000 0.00 0.00 0.00 2.92
54 55 0.107017 CGGAATCCCCTTGCACTCAT 60.107 55.000 0.00 0.00 0.00 2.90
55 56 1.299648 CGGAATCCCCTTGCACTCA 59.700 57.895 0.00 0.00 0.00 3.41
56 57 2.115291 GCGGAATCCCCTTGCACTC 61.115 63.158 0.00 0.00 0.00 3.51
57 58 2.044946 GCGGAATCCCCTTGCACT 60.045 61.111 0.00 0.00 0.00 4.40
58 59 1.976474 TTGCGGAATCCCCTTGCAC 60.976 57.895 0.00 0.00 32.19 4.57
59 60 1.976474 GTTGCGGAATCCCCTTGCA 60.976 57.895 0.00 0.00 30.83 4.08
60 61 1.250840 AAGTTGCGGAATCCCCTTGC 61.251 55.000 0.00 0.00 0.00 4.01
61 62 0.811281 GAAGTTGCGGAATCCCCTTG 59.189 55.000 0.00 0.00 0.00 3.61
62 63 0.676782 CGAAGTTGCGGAATCCCCTT 60.677 55.000 0.00 0.00 0.00 3.95
63 64 1.078426 CGAAGTTGCGGAATCCCCT 60.078 57.895 0.00 0.00 0.00 4.79
64 65 3.497879 CGAAGTTGCGGAATCCCC 58.502 61.111 0.00 0.00 0.00 4.81
72 73 1.369091 CCCTCAATCCCGAAGTTGCG 61.369 60.000 0.00 0.00 0.00 4.85
73 74 1.032114 CCCCTCAATCCCGAAGTTGC 61.032 60.000 0.00 0.00 0.00 4.17
74 75 0.394352 CCCCCTCAATCCCGAAGTTG 60.394 60.000 0.00 0.00 0.00 3.16
75 76 1.999346 CCCCCTCAATCCCGAAGTT 59.001 57.895 0.00 0.00 0.00 2.66
76 77 3.741325 CCCCCTCAATCCCGAAGT 58.259 61.111 0.00 0.00 0.00 3.01
90 91 3.007182 TCATATAATTTCCGTCGACCCCC 59.993 47.826 10.58 0.00 0.00 5.40
91 92 4.243270 CTCATATAATTTCCGTCGACCCC 58.757 47.826 10.58 0.00 0.00 4.95
92 93 4.243270 CCTCATATAATTTCCGTCGACCC 58.757 47.826 10.58 0.00 0.00 4.46
93 94 3.678548 GCCTCATATAATTTCCGTCGACC 59.321 47.826 10.58 0.00 0.00 4.79
94 95 3.364023 CGCCTCATATAATTTCCGTCGAC 59.636 47.826 5.18 5.18 0.00 4.20
95 96 3.571571 CGCCTCATATAATTTCCGTCGA 58.428 45.455 0.00 0.00 0.00 4.20
96 97 2.666508 CCGCCTCATATAATTTCCGTCG 59.333 50.000 0.00 0.00 0.00 5.12
97 98 2.415512 GCCGCCTCATATAATTTCCGTC 59.584 50.000 0.00 0.00 0.00 4.79
98 99 2.423577 GCCGCCTCATATAATTTCCGT 58.576 47.619 0.00 0.00 0.00 4.69
99 100 1.737793 GGCCGCCTCATATAATTTCCG 59.262 52.381 0.71 0.00 0.00 4.30
100 101 2.790433 TGGCCGCCTCATATAATTTCC 58.210 47.619 11.61 0.00 0.00 3.13
101 102 5.391312 AATTGGCCGCCTCATATAATTTC 57.609 39.130 11.61 0.00 0.00 2.17
102 103 5.806654 AAATTGGCCGCCTCATATAATTT 57.193 34.783 11.61 10.08 0.00 1.82
103 104 5.772672 TGTAAATTGGCCGCCTCATATAATT 59.227 36.000 11.61 4.20 0.00 1.40
104 105 5.321102 TGTAAATTGGCCGCCTCATATAAT 58.679 37.500 11.61 0.00 0.00 1.28
105 106 4.720046 TGTAAATTGGCCGCCTCATATAA 58.280 39.130 11.61 0.00 0.00 0.98
106 107 4.359434 TGTAAATTGGCCGCCTCATATA 57.641 40.909 11.61 0.00 0.00 0.86
107 108 3.222173 TGTAAATTGGCCGCCTCATAT 57.778 42.857 11.61 0.00 0.00 1.78
108 109 2.719531 TGTAAATTGGCCGCCTCATA 57.280 45.000 11.61 0.00 0.00 2.15
109 110 1.846007 TTGTAAATTGGCCGCCTCAT 58.154 45.000 11.61 0.00 0.00 2.90
110 111 1.621992 TTTGTAAATTGGCCGCCTCA 58.378 45.000 11.61 0.00 0.00 3.86
111 112 2.734276 TTTTGTAAATTGGCCGCCTC 57.266 45.000 11.61 0.00 0.00 4.70
112 113 3.694043 ATTTTTGTAAATTGGCCGCCT 57.306 38.095 11.61 0.00 29.68 5.52
113 114 4.093703 GGTTATTTTTGTAAATTGGCCGCC 59.906 41.667 1.04 1.04 35.61 6.13
114 115 4.093703 GGGTTATTTTTGTAAATTGGCCGC 59.906 41.667 0.00 0.00 35.61 6.53
115 116 4.632251 GGGGTTATTTTTGTAAATTGGCCG 59.368 41.667 0.00 0.00 35.61 6.13
116 117 5.561679 TGGGGTTATTTTTGTAAATTGGCC 58.438 37.500 0.00 0.00 35.61 5.36
117 118 6.348950 GCTTGGGGTTATTTTTGTAAATTGGC 60.349 38.462 0.00 0.00 35.61 4.52
118 119 6.712547 TGCTTGGGGTTATTTTTGTAAATTGG 59.287 34.615 0.00 0.00 35.61 3.16
119 120 7.736447 TGCTTGGGGTTATTTTTGTAAATTG 57.264 32.000 0.00 0.00 35.61 2.32
120 121 8.753497 TTTGCTTGGGGTTATTTTTGTAAATT 57.247 26.923 0.00 0.00 35.61 1.82
121 122 8.753497 TTTTGCTTGGGGTTATTTTTGTAAAT 57.247 26.923 0.00 0.00 37.68 1.40
122 123 8.624776 CATTTTGCTTGGGGTTATTTTTGTAAA 58.375 29.630 0.00 0.00 0.00 2.01
123 124 7.993183 TCATTTTGCTTGGGGTTATTTTTGTAA 59.007 29.630 0.00 0.00 0.00 2.41
124 125 7.442666 GTCATTTTGCTTGGGGTTATTTTTGTA 59.557 33.333 0.00 0.00 0.00 2.41
125 126 6.262049 GTCATTTTGCTTGGGGTTATTTTTGT 59.738 34.615 0.00 0.00 0.00 2.83
126 127 6.293900 GGTCATTTTGCTTGGGGTTATTTTTG 60.294 38.462 0.00 0.00 0.00 2.44
127 128 5.767665 GGTCATTTTGCTTGGGGTTATTTTT 59.232 36.000 0.00 0.00 0.00 1.94
128 129 5.312895 GGTCATTTTGCTTGGGGTTATTTT 58.687 37.500 0.00 0.00 0.00 1.82
129 130 4.263287 GGGTCATTTTGCTTGGGGTTATTT 60.263 41.667 0.00 0.00 0.00 1.40
130 131 3.263170 GGGTCATTTTGCTTGGGGTTATT 59.737 43.478 0.00 0.00 0.00 1.40
131 132 2.837591 GGGTCATTTTGCTTGGGGTTAT 59.162 45.455 0.00 0.00 0.00 1.89
132 133 2.252714 GGGTCATTTTGCTTGGGGTTA 58.747 47.619 0.00 0.00 0.00 2.85
133 134 1.055849 GGGTCATTTTGCTTGGGGTT 58.944 50.000 0.00 0.00 0.00 4.11
134 135 0.835971 GGGGTCATTTTGCTTGGGGT 60.836 55.000 0.00 0.00 0.00 4.95
135 136 0.835543 TGGGGTCATTTTGCTTGGGG 60.836 55.000 0.00 0.00 0.00 4.96
136 137 0.321346 GTGGGGTCATTTTGCTTGGG 59.679 55.000 0.00 0.00 0.00 4.12
137 138 1.341080 AGTGGGGTCATTTTGCTTGG 58.659 50.000 0.00 0.00 0.00 3.61
138 139 2.364970 TGAAGTGGGGTCATTTTGCTTG 59.635 45.455 0.00 0.00 0.00 4.01
139 140 2.365293 GTGAAGTGGGGTCATTTTGCTT 59.635 45.455 0.00 0.00 0.00 3.91
140 141 1.963515 GTGAAGTGGGGTCATTTTGCT 59.036 47.619 0.00 0.00 0.00 3.91
141 142 1.963515 AGTGAAGTGGGGTCATTTTGC 59.036 47.619 0.00 0.00 0.00 3.68
142 143 5.713025 CATAAGTGAAGTGGGGTCATTTTG 58.287 41.667 0.00 0.00 0.00 2.44
143 144 4.220602 GCATAAGTGAAGTGGGGTCATTTT 59.779 41.667 0.00 0.00 0.00 1.82
144 145 3.763897 GCATAAGTGAAGTGGGGTCATTT 59.236 43.478 0.00 0.00 0.00 2.32
145 146 3.356290 GCATAAGTGAAGTGGGGTCATT 58.644 45.455 0.00 0.00 0.00 2.57
146 147 2.680805 CGCATAAGTGAAGTGGGGTCAT 60.681 50.000 0.00 0.00 0.00 3.06
147 148 1.338674 CGCATAAGTGAAGTGGGGTCA 60.339 52.381 0.00 0.00 0.00 4.02
148 149 1.369625 CGCATAAGTGAAGTGGGGTC 58.630 55.000 0.00 0.00 0.00 4.46
149 150 0.035439 CCGCATAAGTGAAGTGGGGT 60.035 55.000 0.00 0.00 40.08 4.95
150 151 0.748005 CCCGCATAAGTGAAGTGGGG 60.748 60.000 0.00 0.00 46.82 4.96
151 152 2.780595 CCCGCATAAGTGAAGTGGG 58.219 57.895 0.00 0.00 45.68 4.61
152 153 1.705337 CGCCCGCATAAGTGAAGTGG 61.705 60.000 0.00 0.00 0.00 4.00
153 154 1.019278 ACGCCCGCATAAGTGAAGTG 61.019 55.000 0.00 0.00 0.00 3.16
154 155 1.019278 CACGCCCGCATAAGTGAAGT 61.019 55.000 0.00 0.00 36.79 3.01
155 156 1.705337 CCACGCCCGCATAAGTGAAG 61.705 60.000 1.62 0.00 36.79 3.02
156 157 1.743623 CCACGCCCGCATAAGTGAA 60.744 57.895 1.62 0.00 36.79 3.18
157 158 2.125310 CCACGCCCGCATAAGTGA 60.125 61.111 1.62 0.00 36.79 3.41
158 159 2.125310 TCCACGCCCGCATAAGTG 60.125 61.111 0.00 0.00 0.00 3.16
159 160 2.125269 GTCCACGCCCGCATAAGT 60.125 61.111 0.00 0.00 0.00 2.24
160 161 1.883084 GAGTCCACGCCCGCATAAG 60.883 63.158 0.00 0.00 0.00 1.73
161 162 1.966901 ATGAGTCCACGCCCGCATAA 61.967 55.000 0.00 0.00 0.00 1.90
162 163 2.363711 GATGAGTCCACGCCCGCATA 62.364 60.000 0.00 0.00 0.00 3.14
163 164 3.740128 GATGAGTCCACGCCCGCAT 62.740 63.158 0.00 0.00 0.00 4.73
164 165 4.451150 GATGAGTCCACGCCCGCA 62.451 66.667 0.00 0.00 0.00 5.69
165 166 4.148825 AGATGAGTCCACGCCCGC 62.149 66.667 0.00 0.00 0.00 6.13
166 167 2.202797 CAGATGAGTCCACGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
167 168 1.153549 GTCAGATGAGTCCACGCCC 60.154 63.158 0.00 0.00 0.00 6.13
168 169 0.459237 CAGTCAGATGAGTCCACGCC 60.459 60.000 0.00 0.00 0.00 5.68
169 170 0.459237 CCAGTCAGATGAGTCCACGC 60.459 60.000 0.00 0.00 0.00 5.34
170 171 0.891373 ACCAGTCAGATGAGTCCACG 59.109 55.000 0.00 0.00 0.00 4.94
171 172 1.895798 TGACCAGTCAGATGAGTCCAC 59.104 52.381 0.00 0.00 34.14 4.02
172 173 2.309136 TGACCAGTCAGATGAGTCCA 57.691 50.000 0.00 0.00 34.14 4.02
173 174 3.007398 AGTTTGACCAGTCAGATGAGTCC 59.993 47.826 0.09 0.00 41.13 3.85
174 175 3.993081 CAGTTTGACCAGTCAGATGAGTC 59.007 47.826 0.09 0.00 41.13 3.36
175 176 3.805108 GCAGTTTGACCAGTCAGATGAGT 60.805 47.826 0.09 0.00 41.13 3.41
176 177 2.740981 GCAGTTTGACCAGTCAGATGAG 59.259 50.000 0.09 0.00 41.13 2.90
177 178 2.771089 GCAGTTTGACCAGTCAGATGA 58.229 47.619 0.09 0.00 41.13 2.92
178 179 1.462283 CGCAGTTTGACCAGTCAGATG 59.538 52.381 0.09 3.20 41.13 2.90
179 180 1.800805 CGCAGTTTGACCAGTCAGAT 58.199 50.000 0.09 0.00 41.13 2.90
180 181 0.880278 GCGCAGTTTGACCAGTCAGA 60.880 55.000 0.30 0.00 41.13 3.27
181 182 1.571460 GCGCAGTTTGACCAGTCAG 59.429 57.895 0.30 0.00 41.13 3.51
182 183 1.891919 GGCGCAGTTTGACCAGTCA 60.892 57.895 10.83 0.00 37.91 3.41
183 184 2.946762 GGCGCAGTTTGACCAGTC 59.053 61.111 10.83 0.00 0.00 3.51
184 185 2.972505 CGGCGCAGTTTGACCAGT 60.973 61.111 10.83 0.00 0.00 4.00
185 186 2.664851 TCGGCGCAGTTTGACCAG 60.665 61.111 10.83 0.00 0.00 4.00
186 187 2.970324 GTCGGCGCAGTTTGACCA 60.970 61.111 10.83 0.00 0.00 4.02
187 188 2.443957 CTTGTCGGCGCAGTTTGACC 62.444 60.000 10.83 0.00 0.00 4.02
188 189 1.082756 CTTGTCGGCGCAGTTTGAC 60.083 57.895 10.83 9.28 0.00 3.18
189 190 1.522806 ACTTGTCGGCGCAGTTTGA 60.523 52.632 10.83 0.00 0.00 2.69
190 191 1.369209 CACTTGTCGGCGCAGTTTG 60.369 57.895 10.83 0.36 0.00 2.93
191 192 1.522806 TCACTTGTCGGCGCAGTTT 60.523 52.632 10.83 0.00 0.00 2.66
192 193 2.108157 TCACTTGTCGGCGCAGTT 59.892 55.556 10.83 0.00 0.00 3.16
193 194 2.661866 GTCACTTGTCGGCGCAGT 60.662 61.111 10.83 0.00 0.00 4.40
194 195 2.029288 ATGTCACTTGTCGGCGCAG 61.029 57.895 10.83 5.07 0.00 5.18
195 196 2.030412 ATGTCACTTGTCGGCGCA 59.970 55.556 10.83 0.00 0.00 6.09
196 197 2.476051 CATGTCACTTGTCGGCGC 59.524 61.111 0.00 0.00 0.00 6.53
197 198 2.476051 GCATGTCACTTGTCGGCG 59.524 61.111 0.00 0.00 0.00 6.46
198 199 2.476051 CGCATGTCACTTGTCGGC 59.524 61.111 0.00 0.00 0.00 5.54
199 200 2.476051 GCGCATGTCACTTGTCGG 59.524 61.111 0.30 0.00 0.00 4.79
200 201 2.094539 CGCGCATGTCACTTGTCG 59.905 61.111 8.75 4.03 0.00 4.35
201 202 1.565156 TTCCGCGCATGTCACTTGTC 61.565 55.000 8.75 0.00 0.00 3.18
202 203 1.596752 TTCCGCGCATGTCACTTGT 60.597 52.632 8.75 0.00 0.00 3.16
203 204 1.154413 GTTCCGCGCATGTCACTTG 60.154 57.895 8.75 0.00 0.00 3.16
204 205 1.568612 CTGTTCCGCGCATGTCACTT 61.569 55.000 8.75 0.00 0.00 3.16
205 206 2.029288 CTGTTCCGCGCATGTCACT 61.029 57.895 8.75 0.00 0.00 3.41
206 207 2.317609 ACTGTTCCGCGCATGTCAC 61.318 57.895 8.75 0.00 0.00 3.67
207 208 2.030412 ACTGTTCCGCGCATGTCA 59.970 55.556 8.75 0.00 0.00 3.58
208 209 2.027073 TCACTGTTCCGCGCATGTC 61.027 57.895 8.75 0.00 0.00 3.06
209 210 2.030412 TCACTGTTCCGCGCATGT 59.970 55.556 8.75 0.00 0.00 3.21
210 211 2.476051 GTCACTGTTCCGCGCATG 59.524 61.111 8.75 0.00 0.00 4.06
211 212 2.742372 GGTCACTGTTCCGCGCAT 60.742 61.111 8.75 0.00 0.00 4.73
217 218 3.251571 GTGATTCTACGGTCACTGTTCC 58.748 50.000 0.00 0.00 41.10 3.62
218 219 2.915463 CGTGATTCTACGGTCACTGTTC 59.085 50.000 0.00 0.00 41.90 3.18
219 220 2.942710 CGTGATTCTACGGTCACTGTT 58.057 47.619 0.00 0.00 41.90 3.16
220 221 2.295349 AACGTGATTCTACGGTCACTGT 59.705 45.455 0.00 0.00 40.50 3.55
221 222 2.942710 AACGTGATTCTACGGTCACTG 58.057 47.619 11.45 0.00 40.50 3.66
226 227 3.655276 AACAGAACGTGATTCTACGGT 57.345 42.857 11.45 6.33 46.52 4.83
227 228 4.322804 GTGTAACAGAACGTGATTCTACGG 59.677 45.833 11.45 0.00 46.52 4.02
228 229 4.913345 TGTGTAACAGAACGTGATTCTACG 59.087 41.667 0.00 0.00 46.52 3.51
244 245 4.597079 CCAATACAATCGCCATGTGTAAC 58.403 43.478 0.00 0.00 31.85 2.50
245 246 3.066064 GCCAATACAATCGCCATGTGTAA 59.934 43.478 0.00 0.00 31.85 2.41
246 247 2.616376 GCCAATACAATCGCCATGTGTA 59.384 45.455 0.00 0.00 32.27 2.90
247 248 1.405105 GCCAATACAATCGCCATGTGT 59.595 47.619 0.00 0.00 32.27 3.72
248 249 1.269206 GGCCAATACAATCGCCATGTG 60.269 52.381 0.00 0.00 41.25 3.21
249 250 1.032014 GGCCAATACAATCGCCATGT 58.968 50.000 0.00 0.00 41.25 3.21
250 251 0.040157 CGGCCAATACAATCGCCATG 60.040 55.000 2.24 0.00 41.71 3.66
251 252 0.465460 ACGGCCAATACAATCGCCAT 60.465 50.000 2.24 0.00 41.71 4.40
252 253 0.178301 TACGGCCAATACAATCGCCA 59.822 50.000 2.24 0.00 41.71 5.69
253 254 1.519408 ATACGGCCAATACAATCGCC 58.481 50.000 2.24 0.00 38.07 5.54
254 255 2.095919 GGAATACGGCCAATACAATCGC 60.096 50.000 2.24 0.00 0.00 4.58
255 256 3.186409 CAGGAATACGGCCAATACAATCG 59.814 47.826 2.24 0.00 0.00 3.34
256 257 4.385825 TCAGGAATACGGCCAATACAATC 58.614 43.478 2.24 0.00 0.00 2.67
257 258 4.389374 CTCAGGAATACGGCCAATACAAT 58.611 43.478 2.24 0.00 0.00 2.71
258 259 3.804036 CTCAGGAATACGGCCAATACAA 58.196 45.455 2.24 0.00 0.00 2.41
259 260 2.484770 GCTCAGGAATACGGCCAATACA 60.485 50.000 2.24 0.00 0.00 2.29
260 261 2.143925 GCTCAGGAATACGGCCAATAC 58.856 52.381 2.24 0.00 0.00 1.89
261 262 1.765904 TGCTCAGGAATACGGCCAATA 59.234 47.619 2.24 0.00 0.00 1.90
262 263 0.546122 TGCTCAGGAATACGGCCAAT 59.454 50.000 2.24 0.00 0.00 3.16
263 264 0.546122 ATGCTCAGGAATACGGCCAA 59.454 50.000 2.24 0.00 0.00 4.52
264 265 0.179048 CATGCTCAGGAATACGGCCA 60.179 55.000 2.24 0.00 0.00 5.36
265 266 0.106708 TCATGCTCAGGAATACGGCC 59.893 55.000 0.00 0.00 0.00 6.13
266 267 1.802960 CATCATGCTCAGGAATACGGC 59.197 52.381 0.00 0.00 0.00 5.68
267 268 3.062763 GTCATCATGCTCAGGAATACGG 58.937 50.000 0.00 0.00 0.00 4.02
268 269 3.721035 TGTCATCATGCTCAGGAATACG 58.279 45.455 0.00 0.00 0.00 3.06
269 270 6.094603 ACTTTTGTCATCATGCTCAGGAATAC 59.905 38.462 0.00 0.00 0.00 1.89
270 271 6.094464 CACTTTTGTCATCATGCTCAGGAATA 59.906 38.462 0.00 0.00 0.00 1.75
271 272 5.014858 ACTTTTGTCATCATGCTCAGGAAT 58.985 37.500 0.00 0.00 0.00 3.01
272 273 4.216902 CACTTTTGTCATCATGCTCAGGAA 59.783 41.667 0.00 0.00 0.00 3.36
273 274 3.754850 CACTTTTGTCATCATGCTCAGGA 59.245 43.478 0.00 0.00 0.00 3.86
274 275 3.754850 TCACTTTTGTCATCATGCTCAGG 59.245 43.478 0.00 0.00 0.00 3.86
275 276 4.142665 CCTCACTTTTGTCATCATGCTCAG 60.143 45.833 0.00 0.00 0.00 3.35
276 277 3.754850 CCTCACTTTTGTCATCATGCTCA 59.245 43.478 0.00 0.00 0.00 4.26
277 278 3.755378 ACCTCACTTTTGTCATCATGCTC 59.245 43.478 0.00 0.00 0.00 4.26
278 279 3.759581 ACCTCACTTTTGTCATCATGCT 58.240 40.909 0.00 0.00 0.00 3.79
279 280 4.510038 AACCTCACTTTTGTCATCATGC 57.490 40.909 0.00 0.00 0.00 4.06
280 281 6.323203 AGAAACCTCACTTTTGTCATCATG 57.677 37.500 0.00 0.00 0.00 3.07
281 282 6.293626 CGAAGAAACCTCACTTTTGTCATCAT 60.294 38.462 0.00 0.00 0.00 2.45
282 283 5.007626 CGAAGAAACCTCACTTTTGTCATCA 59.992 40.000 0.00 0.00 0.00 3.07
283 284 5.444122 CGAAGAAACCTCACTTTTGTCATC 58.556 41.667 0.00 0.00 0.00 2.92
284 285 4.261197 GCGAAGAAACCTCACTTTTGTCAT 60.261 41.667 0.00 0.00 0.00 3.06
285 286 3.064820 GCGAAGAAACCTCACTTTTGTCA 59.935 43.478 0.00 0.00 0.00 3.58
286 287 3.618698 GCGAAGAAACCTCACTTTTGTC 58.381 45.455 0.00 0.00 0.00 3.18
287 288 2.031683 CGCGAAGAAACCTCACTTTTGT 59.968 45.455 0.00 0.00 0.00 2.83
288 289 2.286833 TCGCGAAGAAACCTCACTTTTG 59.713 45.455 6.20 0.00 0.00 2.44
289 290 2.544267 CTCGCGAAGAAACCTCACTTTT 59.456 45.455 11.33 0.00 0.00 2.27
290 291 2.135933 CTCGCGAAGAAACCTCACTTT 58.864 47.619 11.33 0.00 0.00 2.66
291 292 1.068741 ACTCGCGAAGAAACCTCACTT 59.931 47.619 11.33 0.00 0.00 3.16
292 293 0.674534 ACTCGCGAAGAAACCTCACT 59.325 50.000 11.33 0.00 0.00 3.41
293 294 1.456165 GAACTCGCGAAGAAACCTCAC 59.544 52.381 11.33 0.00 0.00 3.51
294 295 1.779569 GAACTCGCGAAGAAACCTCA 58.220 50.000 11.33 0.00 0.00 3.86
295 296 0.708918 CGAACTCGCGAAGAAACCTC 59.291 55.000 11.33 0.00 0.00 3.85
296 297 0.666577 CCGAACTCGCGAAGAAACCT 60.667 55.000 11.33 0.00 38.18 3.50
297 298 0.942884 ACCGAACTCGCGAAGAAACC 60.943 55.000 11.33 0.00 38.18 3.27
298 299 0.161024 CACCGAACTCGCGAAGAAAC 59.839 55.000 11.33 0.00 38.18 2.78
299 300 0.031043 TCACCGAACTCGCGAAGAAA 59.969 50.000 11.33 0.00 38.18 2.52
300 301 0.242825 ATCACCGAACTCGCGAAGAA 59.757 50.000 11.33 0.00 38.18 2.52
301 302 0.242825 AATCACCGAACTCGCGAAGA 59.757 50.000 11.33 0.00 38.18 2.87
302 303 0.366871 CAATCACCGAACTCGCGAAG 59.633 55.000 11.33 7.16 38.18 3.79
303 304 1.623081 GCAATCACCGAACTCGCGAA 61.623 55.000 11.33 0.00 38.18 4.70
304 305 2.092291 GCAATCACCGAACTCGCGA 61.092 57.895 9.26 9.26 38.18 5.87
305 306 2.395690 GCAATCACCGAACTCGCG 59.604 61.111 0.00 0.00 38.18 5.87
306 307 1.573829 TTGGCAATCACCGAACTCGC 61.574 55.000 0.00 0.00 38.18 5.03
307 308 1.086696 ATTGGCAATCACCGAACTCG 58.913 50.000 6.96 0.00 39.44 4.18
308 309 1.468054 GCATTGGCAATCACCGAACTC 60.468 52.381 10.36 0.00 40.72 3.01
309 310 0.527565 GCATTGGCAATCACCGAACT 59.472 50.000 10.36 0.00 40.72 3.01
310 311 3.034569 GCATTGGCAATCACCGAAC 57.965 52.632 10.36 0.00 40.72 3.95
321 322 6.724694 TTTCAATGAGTAAAATGCATTGGC 57.275 33.333 13.82 6.38 45.40 4.52
325 326 9.369904 GGTGTAATTTCAATGAGTAAAATGCAT 57.630 29.630 0.00 0.00 0.00 3.96
326 327 7.540400 CGGTGTAATTTCAATGAGTAAAATGCA 59.460 33.333 0.00 0.00 0.00 3.96
327 328 7.753132 TCGGTGTAATTTCAATGAGTAAAATGC 59.247 33.333 0.00 0.00 0.00 3.56
328 329 9.061610 GTCGGTGTAATTTCAATGAGTAAAATG 57.938 33.333 0.00 0.00 0.00 2.32
329 330 8.241367 GGTCGGTGTAATTTCAATGAGTAAAAT 58.759 33.333 0.00 0.00 0.00 1.82
330 331 7.308710 GGGTCGGTGTAATTTCAATGAGTAAAA 60.309 37.037 0.00 0.00 0.00 1.52
331 332 6.149807 GGGTCGGTGTAATTTCAATGAGTAAA 59.850 38.462 0.00 0.00 0.00 2.01
332 333 5.644636 GGGTCGGTGTAATTTCAATGAGTAA 59.355 40.000 0.00 0.00 0.00 2.24
333 334 5.046159 AGGGTCGGTGTAATTTCAATGAGTA 60.046 40.000 0.00 0.00 0.00 2.59
334 335 4.007659 GGGTCGGTGTAATTTCAATGAGT 58.992 43.478 0.00 0.00 0.00 3.41
335 336 4.261801 AGGGTCGGTGTAATTTCAATGAG 58.738 43.478 0.00 0.00 0.00 2.90
336 337 4.258543 GAGGGTCGGTGTAATTTCAATGA 58.741 43.478 0.00 0.00 0.00 2.57
337 338 3.063452 CGAGGGTCGGTGTAATTTCAATG 59.937 47.826 0.00 0.00 36.00 2.82
338 339 3.267483 CGAGGGTCGGTGTAATTTCAAT 58.733 45.455 0.00 0.00 36.00 2.57
339 340 2.037511 ACGAGGGTCGGTGTAATTTCAA 59.962 45.455 0.86 0.00 45.59 2.69
340 341 1.619827 ACGAGGGTCGGTGTAATTTCA 59.380 47.619 0.86 0.00 45.59 2.69
341 342 2.375173 ACGAGGGTCGGTGTAATTTC 57.625 50.000 0.86 0.00 45.59 2.17
342 343 3.959535 TTACGAGGGTCGGTGTAATTT 57.040 42.857 0.86 0.00 45.59 1.82
343 344 3.588955 GTTTACGAGGGTCGGTGTAATT 58.411 45.455 0.86 0.00 45.59 1.40
344 345 2.415893 CGTTTACGAGGGTCGGTGTAAT 60.416 50.000 0.86 0.00 45.59 1.89
345 346 1.068610 CGTTTACGAGGGTCGGTGTAA 60.069 52.381 0.86 0.00 45.59 2.41
346 347 0.521291 CGTTTACGAGGGTCGGTGTA 59.479 55.000 0.86 0.00 45.59 2.90
347 348 1.172180 TCGTTTACGAGGGTCGGTGT 61.172 55.000 0.03 0.00 45.59 4.16
348 349 1.580942 TCGTTTACGAGGGTCGGTG 59.419 57.895 0.03 0.00 45.59 4.94
349 350 4.079446 TCGTTTACGAGGGTCGGT 57.921 55.556 0.03 0.00 45.59 4.69
358 359 8.814733 TGAAAATAAGCAATACATCGTTTACG 57.185 30.769 0.00 0.00 41.45 3.18
361 362 9.853555 TCATTGAAAATAAGCAATACATCGTTT 57.146 25.926 0.00 0.00 33.68 3.60
362 363 9.853555 TTCATTGAAAATAAGCAATACATCGTT 57.146 25.926 0.00 0.00 33.68 3.85
377 378 9.541143 AACACCGAAGTTTTATTCATTGAAAAT 57.459 25.926 2.68 0.00 0.00 1.82
378 379 8.934507 AACACCGAAGTTTTATTCATTGAAAA 57.065 26.923 2.68 0.00 0.00 2.29
379 380 8.934507 AAACACCGAAGTTTTATTCATTGAAA 57.065 26.923 2.68 0.00 34.25 2.69
380 381 8.934507 AAAACACCGAAGTTTTATTCATTGAA 57.065 26.923 13.76 0.75 34.25 2.69
381 382 8.934507 AAAAACACCGAAGTTTTATTCATTGA 57.065 26.923 15.12 0.00 34.25 2.57
413 414 9.330063 GGAATTCAGGAATTTCAGTTTTTCTTT 57.670 29.630 7.93 0.00 40.77 2.52
414 415 8.708378 AGGAATTCAGGAATTTCAGTTTTTCTT 58.292 29.630 13.93 0.00 40.77 2.52
415 416 8.255111 AGGAATTCAGGAATTTCAGTTTTTCT 57.745 30.769 13.93 0.00 40.77 2.52
416 417 8.893219 AAGGAATTCAGGAATTTCAGTTTTTC 57.107 30.769 13.93 0.00 40.77 2.29
417 418 9.685276 AAAAGGAATTCAGGAATTTCAGTTTTT 57.315 25.926 13.93 9.51 40.77 1.94
418 419 9.685276 AAAAAGGAATTCAGGAATTTCAGTTTT 57.315 25.926 13.93 14.57 40.77 2.43
444 445 2.695666 TCAGGAATTTCACCCGCAAAAA 59.304 40.909 0.00 0.00 0.00 1.94
445 446 2.311463 TCAGGAATTTCACCCGCAAAA 58.689 42.857 0.00 0.00 0.00 2.44
446 447 1.988293 TCAGGAATTTCACCCGCAAA 58.012 45.000 0.00 0.00 0.00 3.68
447 448 1.988293 TTCAGGAATTTCACCCGCAA 58.012 45.000 0.00 0.00 0.00 4.85
448 449 2.214376 ATTCAGGAATTTCACCCGCA 57.786 45.000 0.00 0.00 0.00 5.69
449 450 2.159240 GGAATTCAGGAATTTCACCCGC 60.159 50.000 7.93 0.00 40.77 6.13
450 451 3.356290 AGGAATTCAGGAATTTCACCCG 58.644 45.455 13.93 0.00 40.77 5.28
451 452 4.772100 TCAAGGAATTCAGGAATTTCACCC 59.228 41.667 13.93 8.40 40.77 4.61
452 453 5.982890 TCAAGGAATTCAGGAATTTCACC 57.017 39.130 13.93 8.69 40.77 4.02
453 454 9.927668 TTTATTCAAGGAATTCAGGAATTTCAC 57.072 29.630 17.85 6.43 40.77 3.18
505 512 5.571741 GCCTTAATTAGCGGTGTTTTCTTTC 59.428 40.000 0.00 0.00 0.00 2.62
506 513 5.466819 GCCTTAATTAGCGGTGTTTTCTTT 58.533 37.500 0.00 0.00 0.00 2.52
559 568 3.376859 CCGCTTGCAAATGGTTGTAGATA 59.623 43.478 0.00 0.00 37.06 1.98
560 569 2.164219 CCGCTTGCAAATGGTTGTAGAT 59.836 45.455 0.00 0.00 37.06 1.98
572 582 2.034053 CCTTCTACAAAACCGCTTGCAA 59.966 45.455 0.00 0.00 0.00 4.08
573 585 1.606668 CCTTCTACAAAACCGCTTGCA 59.393 47.619 0.00 0.00 0.00 4.08
691 713 1.081175 TGCGACGCTCTCAACTCAG 60.081 57.895 22.08 0.00 0.00 3.35
758 793 2.223272 GGCTTCTTATAAGTGCCGTTGC 60.223 50.000 24.83 14.48 37.15 4.17
760 795 3.007635 GTGGCTTCTTATAAGTGCCGTT 58.992 45.455 28.91 0.00 43.82 4.44
762 797 1.593006 CGTGGCTTCTTATAAGTGCCG 59.407 52.381 28.91 20.94 43.82 5.69
788 842 1.422402 GGGGAGTAACAAACCTCCACA 59.578 52.381 7.89 0.00 39.12 4.17
809 865 1.073548 GGGCTCCCACGGTAAACAA 59.926 57.895 0.00 0.00 35.81 2.83
882 951 0.914417 GGAGTGAGTGGGGGAATGGA 60.914 60.000 0.00 0.00 0.00 3.41
883 952 1.207488 TGGAGTGAGTGGGGGAATGG 61.207 60.000 0.00 0.00 0.00 3.16
884 953 0.921896 ATGGAGTGAGTGGGGGAATG 59.078 55.000 0.00 0.00 0.00 2.67
886 955 0.914417 GGATGGAGTGAGTGGGGGAA 60.914 60.000 0.00 0.00 0.00 3.97
903 977 3.583086 CCAAGTAAAAGAGGAGGACTGGA 59.417 47.826 0.00 0.00 0.00 3.86
1774 1926 3.327404 GACCTTCCCCTTGGCGGA 61.327 66.667 0.00 0.00 33.16 5.54
2071 2226 0.460987 GAATCTCCAGAGTGTGCCGG 60.461 60.000 0.00 0.00 0.00 6.13
2122 2290 1.135199 GCATTGAGAGTTGCCATGTGG 60.135 52.381 0.00 0.00 38.53 4.17
2189 2366 2.038952 CCTGCGGATTCATGGAGGAATA 59.961 50.000 9.26 0.00 45.70 1.75
2233 2414 2.856032 CGCTTCACGTTCTGCAGG 59.144 61.111 15.13 0.00 36.87 4.85
2236 2417 3.702555 ACGCGCTTCACGTTCTGC 61.703 61.111 5.73 0.00 41.93 4.26
2341 2522 2.353610 GGGGAAGTCGGCGTAGGAA 61.354 63.158 6.85 0.00 0.00 3.36
2405 2592 2.277404 GTGGTGGTGGTGGTGGTT 59.723 61.111 0.00 0.00 0.00 3.67
2406 2593 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
2407 2594 3.790416 CTGGTGGTGGTGGTGGTGG 62.790 68.421 0.00 0.00 0.00 4.61
2408 2595 2.203337 CTGGTGGTGGTGGTGGTG 60.203 66.667 0.00 0.00 0.00 4.17
2409 2596 4.204028 GCTGGTGGTGGTGGTGGT 62.204 66.667 0.00 0.00 0.00 4.16
2410 2597 4.202574 TGCTGGTGGTGGTGGTGG 62.203 66.667 0.00 0.00 0.00 4.61
2411 2598 2.595463 CTGCTGGTGGTGGTGGTG 60.595 66.667 0.00 0.00 0.00 4.17
2412 2599 3.889692 CCTGCTGGTGGTGGTGGT 61.890 66.667 0.51 0.00 0.00 4.16
2434 2621 1.072159 GAAGCTGTGGTGCAGGAGT 59.928 57.895 0.00 0.00 45.14 3.85
3095 3291 2.107750 CATCTCGGACATGCGGCT 59.892 61.111 0.00 0.00 0.00 5.52
3205 3401 3.253188 TCAAGTGACATTAAAGTGCTGCC 59.747 43.478 0.00 0.00 0.00 4.85
3212 3408 8.752766 ATCAATGCTTTCAAGTGACATTAAAG 57.247 30.769 0.00 0.00 30.16 1.85
3213 3409 8.358895 TGATCAATGCTTTCAAGTGACATTAAA 58.641 29.630 0.00 0.00 30.16 1.52
3214 3410 7.809331 GTGATCAATGCTTTCAAGTGACATTAA 59.191 33.333 0.00 0.00 30.16 1.40
3215 3411 7.175467 AGTGATCAATGCTTTCAAGTGACATTA 59.825 33.333 0.00 0.00 30.16 1.90
3216 3412 6.015688 AGTGATCAATGCTTTCAAGTGACATT 60.016 34.615 0.00 0.00 0.00 2.71
3218 3414 4.823442 AGTGATCAATGCTTTCAAGTGACA 59.177 37.500 0.00 0.00 0.00 3.58
3219 3415 5.368256 AGTGATCAATGCTTTCAAGTGAC 57.632 39.130 0.00 0.00 0.00 3.67
3220 3416 4.152938 CGAGTGATCAATGCTTTCAAGTGA 59.847 41.667 0.00 0.00 0.00 3.41
3230 3434 6.291067 TCATTCATAACGAGTGATCAATGC 57.709 37.500 0.00 0.00 35.60 3.56
3261 3465 3.684103 ATTCAACGTCGTTTTTCAGCA 57.316 38.095 8.15 0.00 0.00 4.41
3267 3471 2.533942 GCTGCAAATTCAACGTCGTTTT 59.466 40.909 8.15 0.00 0.00 2.43
3269 3473 1.753956 GCTGCAAATTCAACGTCGTT 58.246 45.000 4.40 4.40 0.00 3.85
3270 3474 0.384230 CGCTGCAAATTCAACGTCGT 60.384 50.000 0.00 0.00 0.00 4.34
3271 3475 1.655697 GCGCTGCAAATTCAACGTCG 61.656 55.000 0.00 0.00 0.00 5.12
3356 3560 0.773644 TGCTTGCTTCCTTCCTTCCT 59.226 50.000 0.00 0.00 0.00 3.36
3357 3561 1.172175 CTGCTTGCTTCCTTCCTTCC 58.828 55.000 0.00 0.00 0.00 3.46
3361 3565 1.399791 CGATTCTGCTTGCTTCCTTCC 59.600 52.381 0.00 0.00 0.00 3.46
3413 3619 0.318441 TCGCTGTTGAGGACTTGGAG 59.682 55.000 0.00 0.00 0.00 3.86
3422 3628 1.063174 GGCTTATTGCTCGCTGTTGAG 59.937 52.381 0.00 0.00 42.39 3.02
3426 3632 1.815421 CCGGCTTATTGCTCGCTGT 60.815 57.895 0.00 0.00 42.39 4.40
3447 3654 4.764771 ACGTAGGGGGTGGCGCTA 62.765 66.667 7.64 0.00 0.00 4.26
3450 3657 3.069946 TACACGTAGGGGGTGGCG 61.070 66.667 0.00 0.00 39.69 5.69
3451 3658 2.234913 CTGTACACGTAGGGGGTGGC 62.235 65.000 0.00 0.00 39.69 5.01
3452 3659 1.895238 CTGTACACGTAGGGGGTGG 59.105 63.158 0.00 0.00 39.69 4.61
3453 3660 1.217244 GCTGTACACGTAGGGGGTG 59.783 63.158 0.00 0.00 41.15 4.61
3454 3661 1.077985 AGCTGTACACGTAGGGGGT 59.922 57.895 0.00 0.00 0.00 4.95
3461 3668 0.104120 TGCAGTTCAGCTGTACACGT 59.896 50.000 23.33 2.28 46.64 4.49
3491 3698 4.007659 GGAAATGAGCTAACTCGGGAAAA 58.992 43.478 0.00 0.00 46.69 2.29
3492 3699 3.606687 GGAAATGAGCTAACTCGGGAAA 58.393 45.455 0.00 0.00 46.69 3.13
3495 3702 1.486726 AGGGAAATGAGCTAACTCGGG 59.513 52.381 0.00 0.00 46.69 5.14
3497 3704 4.253685 TGAAAGGGAAATGAGCTAACTCG 58.746 43.478 0.00 0.00 46.69 4.18
3498 3705 6.765915 AATGAAAGGGAAATGAGCTAACTC 57.234 37.500 0.00 0.00 43.76 3.01
3499 3706 7.452813 AGAAAATGAAAGGGAAATGAGCTAACT 59.547 33.333 0.00 0.00 0.00 2.24
3500 3707 7.606349 AGAAAATGAAAGGGAAATGAGCTAAC 58.394 34.615 0.00 0.00 0.00 2.34
3501 3708 7.362056 CGAGAAAATGAAAGGGAAATGAGCTAA 60.362 37.037 0.00 0.00 0.00 3.09
3587 3805 3.054802 GGATCATGAAAGGTGTCCAGAGT 60.055 47.826 0.00 0.00 0.00 3.24
3616 3834 3.058450 GCAGAGAGAGATACGTAGCGTA 58.942 50.000 5.00 3.85 46.28 4.42
3618 3836 2.139917 AGCAGAGAGAGATACGTAGCG 58.860 52.381 5.00 0.00 0.00 4.26
3620 3838 3.186409 GCAGAGCAGAGAGAGATACGTAG 59.814 52.174 0.08 0.00 0.00 3.51
3621 3839 3.135225 GCAGAGCAGAGAGAGATACGTA 58.865 50.000 0.00 0.00 0.00 3.57
3627 3845 0.747644 CGGAGCAGAGCAGAGAGAGA 60.748 60.000 0.00 0.00 0.00 3.10
3628 3846 1.727511 CCGGAGCAGAGCAGAGAGAG 61.728 65.000 0.00 0.00 0.00 3.20
3630 3848 2.784356 CCCGGAGCAGAGCAGAGAG 61.784 68.421 0.73 0.00 0.00 3.20
3708 4214 1.571460 CACTGCGAGCAAAGGACAC 59.429 57.895 0.00 0.00 0.00 3.67
3729 4235 1.453155 CAGGCAGCGGAGTTATGTTT 58.547 50.000 0.00 0.00 0.00 2.83
3777 4283 5.235186 GGTTAGATGAAACGTCCATCTCATG 59.765 44.000 26.57 0.00 45.36 3.07
3857 4375 0.744414 AATGGGTTGATGCGAGGTCG 60.744 55.000 0.00 0.00 43.27 4.79
3864 4382 2.036346 GCAGGGAATAATGGGTTGATGC 59.964 50.000 0.00 0.00 0.00 3.91
3888 4406 6.276847 CAACATCAGGAGAGGAACAGTATAC 58.723 44.000 0.00 0.00 0.00 1.47
4001 4532 3.776340 CAAAACACCAAAAGTTAGGCGT 58.224 40.909 0.00 0.00 0.00 5.68
4033 4570 0.241749 ACGACGCGGTGATAAGAACA 59.758 50.000 12.47 0.00 0.00 3.18
4035 4572 0.521867 CGACGACGCGGTGATAAGAA 60.522 55.000 12.47 0.00 0.00 2.52
4065 4602 0.179163 CGCTGACGACAGTGCTGATA 60.179 55.000 15.02 0.00 45.45 2.15
4090 4631 2.656560 CTGTACAGGGTGCAGTCTAC 57.343 55.000 15.49 0.00 40.45 2.59
4130 4678 3.618750 GTCGTCGGTCCAACCCCA 61.619 66.667 0.00 0.00 33.75 4.96
4134 4682 2.429739 GGTCGTCGTCGGTCCAAC 60.430 66.667 1.55 0.00 37.69 3.77
4155 4703 4.452733 CCGTGACCTCTTCCGGCC 62.453 72.222 0.00 0.00 33.18 6.13
4195 4743 2.966309 GAGCAACCGAGCCCAAACG 61.966 63.158 0.00 0.00 34.23 3.60
4196 4744 2.954611 GAGCAACCGAGCCCAAAC 59.045 61.111 0.00 0.00 34.23 2.93
4197 4745 2.668212 CGAGCAACCGAGCCCAAA 60.668 61.111 0.00 0.00 34.23 3.28
4198 4746 4.697756 CCGAGCAACCGAGCCCAA 62.698 66.667 0.00 0.00 34.23 4.12
4203 4751 4.379243 ACCAGCCGAGCAACCGAG 62.379 66.667 0.00 0.00 0.00 4.63
4204 4752 4.373116 GACCAGCCGAGCAACCGA 62.373 66.667 0.00 0.00 0.00 4.69
4205 4753 3.883744 AAGACCAGCCGAGCAACCG 62.884 63.158 0.00 0.00 0.00 4.44
4206 4754 2.032681 AAGACCAGCCGAGCAACC 59.967 61.111 0.00 0.00 0.00 3.77
4207 4755 2.970974 GCAAGACCAGCCGAGCAAC 61.971 63.158 0.00 0.00 0.00 4.17
4208 4756 2.669569 GCAAGACCAGCCGAGCAA 60.670 61.111 0.00 0.00 0.00 3.91
4209 4757 3.182590 AAGCAAGACCAGCCGAGCA 62.183 57.895 0.00 0.00 0.00 4.26
4217 4765 2.281484 GCCGGACAAGCAAGACCA 60.281 61.111 5.05 0.00 0.00 4.02
4293 4853 3.075005 TTCGCCTCTTCCCCTCCG 61.075 66.667 0.00 0.00 0.00 4.63
4294 4854 2.904131 CTTCGCCTCTTCCCCTCC 59.096 66.667 0.00 0.00 0.00 4.30
4295 4855 2.185310 TTGCTTCGCCTCTTCCCCTC 62.185 60.000 0.00 0.00 0.00 4.30
4296 4856 2.190488 CTTGCTTCGCCTCTTCCCCT 62.190 60.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.