Multiple sequence alignment - TraesCS2B01G396900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G396900 chr2B 100.000 2925 0 0 1 2925 563313172 563310248 0.000000e+00 5402.0
1 TraesCS2B01G396900 chr2B 100.000 207 0 0 3189 3395 563309984 563309778 1.910000e-102 383.0
2 TraesCS2B01G396900 chr2B 91.250 80 6 1 543 622 667815447 667815369 1.290000e-19 108.0
3 TraesCS2B01G396900 chr2B 95.556 45 2 0 474 518 563313731 563313775 4.700000e-09 73.1
4 TraesCS2B01G396900 chr2D 96.512 2179 61 7 760 2925 480510992 480508816 0.000000e+00 3589.0
5 TraesCS2B01G396900 chr2D 85.680 419 55 5 51 464 119370503 119370085 1.450000e-118 436.0
6 TraesCS2B01G396900 chr2D 97.826 138 2 1 3189 3325 480508782 480508645 1.570000e-58 237.0
7 TraesCS2B01G396900 chr2D 97.183 71 2 0 3325 3395 480508249 480508179 1.650000e-23 121.0
8 TraesCS2B01G396900 chr2A 96.062 2184 47 15 763 2925 623088644 623086479 0.000000e+00 3520.0
9 TraesCS2B01G396900 chrUn 88.249 417 46 3 52 467 21370615 21370201 2.350000e-136 496.0
10 TraesCS2B01G396900 chr3A 86.916 428 48 7 38 459 585062155 585062580 1.100000e-129 473.0
11 TraesCS2B01G396900 chr3A 85.919 419 51 8 51 463 67904114 67903698 1.120000e-119 440.0
12 TraesCS2B01G396900 chr1D 86.079 431 54 6 47 474 40223132 40222705 3.090000e-125 459.0
13 TraesCS2B01G396900 chr1D 91.250 80 6 1 543 622 298072400 298072478 1.290000e-19 108.0
14 TraesCS2B01G396900 chr7A 86.364 418 51 5 51 464 118470620 118471035 5.170000e-123 451.0
15 TraesCS2B01G396900 chr7A 86.199 413 48 8 53 460 510904089 510903681 4.020000e-119 438.0
16 TraesCS2B01G396900 chr7A 85.714 420 54 5 51 464 712206980 712206561 4.020000e-119 438.0
17 TraesCS2B01G396900 chr3D 86.158 419 51 7 51 464 566071504 566071088 2.400000e-121 446.0
18 TraesCS2B01G396900 chr3D 93.421 76 4 1 544 619 597862743 597862669 9.960000e-21 111.0
19 TraesCS2B01G396900 chr7D 92.593 81 5 1 543 623 461122482 461122403 7.700000e-22 115.0
20 TraesCS2B01G396900 chr7B 91.463 82 6 1 543 624 136051609 136051689 9.960000e-21 111.0
21 TraesCS2B01G396900 chr4B 92.405 79 5 1 543 621 579465554 579465477 9.960000e-21 111.0
22 TraesCS2B01G396900 chr6B 91.250 80 4 2 543 620 661519254 661519176 4.630000e-19 106.0
23 TraesCS2B01G396900 chr6D 91.026 78 6 1 543 620 322427705 322427629 1.670000e-18 104.0
24 TraesCS2B01G396900 chr5B 90.000 80 7 1 543 622 591758836 591758914 5.990000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G396900 chr2B 563309778 563313172 3394 True 2892.500000 5402 100.000000 1 3395 2 chr2B.!!$R2 3394
1 TraesCS2B01G396900 chr2D 480508179 480510992 2813 True 1315.666667 3589 97.173667 760 3395 3 chr2D.!!$R2 2635
2 TraesCS2B01G396900 chr2A 623086479 623088644 2165 True 3520.000000 3520 96.062000 763 2925 1 chr2A.!!$R1 2162

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 125 0.028770 TTGCTTTCGCCAAAGTCACG 59.971 50.0 5.68 0.0 41.18 4.35 F
256 257 0.036306 GTGCCTCTTTCGGAAGGGAA 59.964 55.0 4.36 0.0 35.21 3.97 F
743 744 0.039035 AGCCCAATAAACAGGCCGAA 59.961 50.0 0.00 0.0 0.00 4.30 F
1965 1982 0.108186 AGATGCTCGACGAAATGCCA 60.108 50.0 0.00 0.0 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2019 0.475906 ATGAGCCCCTCAAGTATGGC 59.524 55.000 0.0 0.0 44.04 4.40 R
2058 2075 0.737367 CGTTCTTGCTCATCTCCGCA 60.737 55.000 0.0 0.0 0.00 5.69 R
2221 2238 1.066787 GCTAAAGTCGAGAAGCCCAGT 60.067 52.381 0.0 0.0 0.00 4.00 R
3286 3308 1.239347 GGTCTTGCTTCCTTTTCGCT 58.761 50.000 0.0 0.0 0.00 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.927668 CCTTAGCTTTTGGATAAGAAAATTTCA 57.072 29.630 8.55 0.00 44.10 2.69
86 87 2.304751 ACGAGAGTCACGGTTTTGTT 57.695 45.000 14.49 0.00 44.19 2.83
87 88 2.624636 ACGAGAGTCACGGTTTTGTTT 58.375 42.857 14.49 0.00 44.19 2.83
88 89 2.606272 ACGAGAGTCACGGTTTTGTTTC 59.394 45.455 14.49 0.00 44.19 2.78
89 90 2.033151 CGAGAGTCACGGTTTTGTTTCC 60.033 50.000 1.62 0.00 0.00 3.13
90 91 2.940410 GAGAGTCACGGTTTTGTTTCCA 59.060 45.455 0.00 0.00 0.00 3.53
91 92 2.681344 AGAGTCACGGTTTTGTTTCCAC 59.319 45.455 0.00 0.00 0.00 4.02
92 93 2.420722 GAGTCACGGTTTTGTTTCCACA 59.579 45.455 0.00 0.00 0.00 4.17
93 94 2.820787 AGTCACGGTTTTGTTTCCACAA 59.179 40.909 0.00 0.00 41.39 3.33
94 95 3.119637 AGTCACGGTTTTGTTTCCACAAG 60.120 43.478 0.00 0.00 43.92 3.16
95 96 3.082548 TCACGGTTTTGTTTCCACAAGA 58.917 40.909 0.00 0.00 43.92 3.02
96 97 3.127895 TCACGGTTTTGTTTCCACAAGAG 59.872 43.478 0.00 0.00 43.92 2.85
97 98 2.425668 ACGGTTTTGTTTCCACAAGAGG 59.574 45.455 0.00 0.00 43.92 3.69
98 99 2.425668 CGGTTTTGTTTCCACAAGAGGT 59.574 45.455 0.00 0.00 43.92 3.85
99 100 3.628487 CGGTTTTGTTTCCACAAGAGGTA 59.372 43.478 0.00 0.00 43.92 3.08
100 101 4.496840 CGGTTTTGTTTCCACAAGAGGTAC 60.497 45.833 0.00 0.00 43.92 3.34
101 102 4.496840 GGTTTTGTTTCCACAAGAGGTACG 60.497 45.833 0.00 0.00 43.92 3.67
102 103 2.536761 TGTTTCCACAAGAGGTACGG 57.463 50.000 0.00 0.00 0.00 4.02
103 104 1.764134 TGTTTCCACAAGAGGTACGGT 59.236 47.619 0.00 0.00 0.00 4.83
104 105 2.171027 TGTTTCCACAAGAGGTACGGTT 59.829 45.455 0.00 0.00 0.00 4.44
105 106 3.208594 GTTTCCACAAGAGGTACGGTTT 58.791 45.455 0.00 0.00 0.00 3.27
106 107 3.564053 TTCCACAAGAGGTACGGTTTT 57.436 42.857 0.00 0.00 0.00 2.43
107 108 2.841215 TCCACAAGAGGTACGGTTTTG 58.159 47.619 0.00 0.00 0.00 2.44
108 109 1.265905 CCACAAGAGGTACGGTTTTGC 59.734 52.381 0.00 0.00 0.00 3.68
109 110 2.218603 CACAAGAGGTACGGTTTTGCT 58.781 47.619 0.00 0.00 0.00 3.91
110 111 2.616842 CACAAGAGGTACGGTTTTGCTT 59.383 45.455 0.00 0.00 0.00 3.91
111 112 3.066203 CACAAGAGGTACGGTTTTGCTTT 59.934 43.478 0.00 0.00 0.00 3.51
112 113 3.314357 ACAAGAGGTACGGTTTTGCTTTC 59.686 43.478 0.00 0.00 0.00 2.62
113 114 2.140717 AGAGGTACGGTTTTGCTTTCG 58.859 47.619 0.00 0.00 0.00 3.46
114 115 0.589708 AGGTACGGTTTTGCTTTCGC 59.410 50.000 0.00 0.00 0.00 4.70
115 116 0.386352 GGTACGGTTTTGCTTTCGCC 60.386 55.000 0.00 0.00 34.43 5.54
116 117 0.308376 GTACGGTTTTGCTTTCGCCA 59.692 50.000 0.00 0.00 34.43 5.69
117 118 1.022735 TACGGTTTTGCTTTCGCCAA 58.977 45.000 0.00 0.00 34.43 4.52
118 119 0.173708 ACGGTTTTGCTTTCGCCAAA 59.826 45.000 0.00 0.00 34.43 3.28
119 120 0.852136 CGGTTTTGCTTTCGCCAAAG 59.148 50.000 0.00 0.00 41.92 2.77
120 121 1.801025 CGGTTTTGCTTTCGCCAAAGT 60.801 47.619 5.68 0.00 41.18 2.66
121 122 1.858458 GGTTTTGCTTTCGCCAAAGTC 59.142 47.619 5.68 0.00 41.18 3.01
122 123 2.535331 GTTTTGCTTTCGCCAAAGTCA 58.465 42.857 5.68 1.86 41.18 3.41
123 124 2.202295 TTTGCTTTCGCCAAAGTCAC 57.798 45.000 5.68 0.00 41.18 3.67
124 125 0.028770 TTGCTTTCGCCAAAGTCACG 59.971 50.000 5.68 0.00 41.18 4.35
125 126 1.082104 GCTTTCGCCAAAGTCACGG 60.082 57.895 5.68 0.00 41.18 4.94
126 127 1.082104 CTTTCGCCAAAGTCACGGC 60.082 57.895 0.00 0.00 45.28 5.68
127 128 2.458006 CTTTCGCCAAAGTCACGGCC 62.458 60.000 0.00 0.00 46.04 6.13
130 131 4.025401 GCCAAAGTCACGGCCGTG 62.025 66.667 45.04 45.04 46.64 4.94
131 132 4.025401 CCAAAGTCACGGCCGTGC 62.025 66.667 45.55 38.06 45.04 5.34
132 133 4.025401 CAAAGTCACGGCCGTGCC 62.025 66.667 45.55 38.78 46.75 5.01
144 145 4.598257 CGTGCCTCTCGGAAACAT 57.402 55.556 0.00 0.00 0.00 2.71
145 146 3.733236 CGTGCCTCTCGGAAACATA 57.267 52.632 0.00 0.00 0.00 2.29
146 147 2.004583 CGTGCCTCTCGGAAACATAA 57.995 50.000 0.00 0.00 0.00 1.90
147 148 2.343101 CGTGCCTCTCGGAAACATAAA 58.657 47.619 0.00 0.00 0.00 1.40
148 149 2.739913 CGTGCCTCTCGGAAACATAAAA 59.260 45.455 0.00 0.00 0.00 1.52
149 150 3.187637 CGTGCCTCTCGGAAACATAAAAA 59.812 43.478 0.00 0.00 0.00 1.94
184 185 0.958822 TTTTTCCTTCCGCAAGAGGC 59.041 50.000 0.00 0.00 43.02 4.70
185 186 0.179004 TTTTCCTTCCGCAAGAGGCA 60.179 50.000 0.00 0.00 45.17 4.75
186 187 0.889186 TTTCCTTCCGCAAGAGGCAC 60.889 55.000 0.00 0.00 45.17 5.01
187 188 2.032528 CCTTCCGCAAGAGGCACA 59.967 61.111 0.00 0.00 45.17 4.57
188 189 1.600636 CCTTCCGCAAGAGGCACAA 60.601 57.895 0.00 0.00 45.17 3.33
189 190 0.962356 CCTTCCGCAAGAGGCACAAT 60.962 55.000 0.00 0.00 45.17 2.71
190 191 0.883833 CTTCCGCAAGAGGCACAATT 59.116 50.000 0.00 0.00 45.17 2.32
191 192 1.270550 CTTCCGCAAGAGGCACAATTT 59.729 47.619 0.00 0.00 45.17 1.82
192 193 1.327303 TCCGCAAGAGGCACAATTTT 58.673 45.000 0.00 0.00 45.17 1.82
193 194 1.000385 TCCGCAAGAGGCACAATTTTG 60.000 47.619 0.00 0.00 45.17 2.44
194 195 0.785979 CGCAAGAGGCACAATTTTGC 59.214 50.000 8.09 8.09 45.17 3.68
195 196 1.603678 CGCAAGAGGCACAATTTTGCT 60.604 47.619 15.73 2.78 45.17 3.91
196 197 2.486918 GCAAGAGGCACAATTTTGCTT 58.513 42.857 15.73 8.75 42.56 3.91
197 198 2.874086 GCAAGAGGCACAATTTTGCTTT 59.126 40.909 15.73 5.34 42.56 3.51
198 199 3.059393 GCAAGAGGCACAATTTTGCTTTC 60.059 43.478 15.73 13.17 42.56 2.62
199 200 3.017265 AGAGGCACAATTTTGCTTTCG 57.983 42.857 15.73 0.00 42.56 3.46
200 201 2.362077 AGAGGCACAATTTTGCTTTCGT 59.638 40.909 15.73 0.00 42.56 3.85
201 202 2.472488 GAGGCACAATTTTGCTTTCGTG 59.528 45.455 15.73 0.57 42.56 4.35
202 203 2.100584 AGGCACAATTTTGCTTTCGTGA 59.899 40.909 15.73 0.00 42.56 4.35
203 204 2.472488 GGCACAATTTTGCTTTCGTGAG 59.528 45.455 15.73 0.00 42.56 3.51
204 205 3.371168 GCACAATTTTGCTTTCGTGAGA 58.629 40.909 9.34 0.00 39.59 3.27
205 206 3.423206 GCACAATTTTGCTTTCGTGAGAG 59.577 43.478 9.34 0.00 39.61 3.20
206 207 3.976942 CACAATTTTGCTTTCGTGAGAGG 59.023 43.478 0.00 0.00 43.69 3.69
207 208 2.982470 CAATTTTGCTTTCGTGAGAGGC 59.018 45.455 0.00 0.00 43.69 4.70
208 209 1.674359 TTTTGCTTTCGTGAGAGGCA 58.326 45.000 0.00 0.00 44.45 4.75
209 210 0.944386 TTTGCTTTCGTGAGAGGCAC 59.056 50.000 0.00 0.00 45.26 5.01
228 229 3.885484 ACAGTTGTGATTTTGCGAGAG 57.115 42.857 0.00 0.00 0.00 3.20
229 230 3.466836 ACAGTTGTGATTTTGCGAGAGA 58.533 40.909 0.00 0.00 0.00 3.10
230 231 3.248602 ACAGTTGTGATTTTGCGAGAGAC 59.751 43.478 0.00 0.00 0.00 3.36
231 232 3.248363 CAGTTGTGATTTTGCGAGAGACA 59.752 43.478 0.00 0.00 0.00 3.41
232 233 3.248602 AGTTGTGATTTTGCGAGAGACAC 59.751 43.478 0.00 0.00 0.00 3.67
233 234 2.832563 TGTGATTTTGCGAGAGACACA 58.167 42.857 0.00 0.00 35.06 3.72
234 235 2.802247 TGTGATTTTGCGAGAGACACAG 59.198 45.455 0.00 0.00 33.81 3.66
235 236 3.059884 GTGATTTTGCGAGAGACACAGA 58.940 45.455 0.00 0.00 0.00 3.41
236 237 3.059884 TGATTTTGCGAGAGACACAGAC 58.940 45.455 0.00 0.00 0.00 3.51
237 238 1.487482 TTTTGCGAGAGACACAGACG 58.513 50.000 0.00 0.00 0.00 4.18
238 239 0.384309 TTTGCGAGAGACACAGACGT 59.616 50.000 0.00 0.00 0.00 4.34
244 245 1.960612 GAGACACAGACGTGCCTCT 59.039 57.895 0.00 0.00 46.05 3.69
245 246 0.315568 GAGACACAGACGTGCCTCTT 59.684 55.000 0.00 0.00 46.05 2.85
246 247 1.269831 GAGACACAGACGTGCCTCTTT 60.270 52.381 0.00 0.00 46.05 2.52
247 248 3.176765 GAGACACAGACGTGCCTCTTTC 61.177 54.545 0.00 0.00 46.05 2.62
248 249 2.145225 CACAGACGTGCCTCTTTCG 58.855 57.895 0.00 0.00 36.06 3.46
249 250 1.006102 ACAGACGTGCCTCTTTCGG 60.006 57.895 0.00 0.00 0.00 4.30
250 251 1.289066 CAGACGTGCCTCTTTCGGA 59.711 57.895 0.00 0.00 0.00 4.55
251 252 0.319555 CAGACGTGCCTCTTTCGGAA 60.320 55.000 0.00 0.00 0.00 4.30
252 253 0.038159 AGACGTGCCTCTTTCGGAAG 60.038 55.000 0.00 0.00 0.00 3.46
253 254 1.004918 ACGTGCCTCTTTCGGAAGG 60.005 57.895 2.97 0.00 33.56 3.46
254 255 1.741770 CGTGCCTCTTTCGGAAGGG 60.742 63.158 2.97 0.00 33.56 3.95
255 256 1.677552 GTGCCTCTTTCGGAAGGGA 59.322 57.895 4.36 0.00 35.21 4.20
256 257 0.036306 GTGCCTCTTTCGGAAGGGAA 59.964 55.000 4.36 0.00 35.21 3.97
257 258 0.768622 TGCCTCTTTCGGAAGGGAAA 59.231 50.000 4.36 0.00 35.21 3.13
258 259 1.144093 TGCCTCTTTCGGAAGGGAAAA 59.856 47.619 4.36 0.00 35.21 2.29
259 260 2.235891 GCCTCTTTCGGAAGGGAAAAA 58.764 47.619 4.36 0.00 35.21 1.94
274 275 3.800826 AAAAACCTGTGCTCTCGGT 57.199 47.368 0.00 0.00 0.00 4.69
275 276 2.052782 AAAAACCTGTGCTCTCGGTT 57.947 45.000 7.08 7.08 42.52 4.44
276 277 1.594331 AAAACCTGTGCTCTCGGTTC 58.406 50.000 11.57 0.00 39.97 3.62
277 278 0.600255 AAACCTGTGCTCTCGGTTCG 60.600 55.000 11.57 0.00 39.97 3.95
278 279 2.125912 CCTGTGCTCTCGGTTCGG 60.126 66.667 0.00 0.00 0.00 4.30
279 280 2.651361 CTGTGCTCTCGGTTCGGT 59.349 61.111 0.00 0.00 0.00 4.69
280 281 1.006102 CTGTGCTCTCGGTTCGGTT 60.006 57.895 0.00 0.00 0.00 4.44
281 282 0.600255 CTGTGCTCTCGGTTCGGTTT 60.600 55.000 0.00 0.00 0.00 3.27
282 283 0.179067 TGTGCTCTCGGTTCGGTTTT 60.179 50.000 0.00 0.00 0.00 2.43
283 284 0.942252 GTGCTCTCGGTTCGGTTTTT 59.058 50.000 0.00 0.00 0.00 1.94
299 300 2.108178 TTTTTCGTCCGGCTTTTTCG 57.892 45.000 0.00 0.00 0.00 3.46
300 301 1.015868 TTTTCGTCCGGCTTTTTCGT 58.984 45.000 0.00 0.00 0.00 3.85
301 302 1.015868 TTTCGTCCGGCTTTTTCGTT 58.984 45.000 0.00 0.00 0.00 3.85
302 303 1.015868 TTCGTCCGGCTTTTTCGTTT 58.984 45.000 0.00 0.00 0.00 3.60
303 304 1.863267 TCGTCCGGCTTTTTCGTTTA 58.137 45.000 0.00 0.00 0.00 2.01
304 305 1.794116 TCGTCCGGCTTTTTCGTTTAG 59.206 47.619 0.00 0.00 0.00 1.85
305 306 1.528161 CGTCCGGCTTTTTCGTTTAGT 59.472 47.619 0.00 0.00 0.00 2.24
306 307 2.032636 CGTCCGGCTTTTTCGTTTAGTT 60.033 45.455 0.00 0.00 0.00 2.24
307 308 3.546616 CGTCCGGCTTTTTCGTTTAGTTT 60.547 43.478 0.00 0.00 0.00 2.66
308 309 4.353737 GTCCGGCTTTTTCGTTTAGTTTT 58.646 39.130 0.00 0.00 0.00 2.43
309 310 4.799949 GTCCGGCTTTTTCGTTTAGTTTTT 59.200 37.500 0.00 0.00 0.00 1.94
345 346 8.915871 AAATTCGTCAAAATCTATCAACATGG 57.084 30.769 0.00 0.00 0.00 3.66
346 347 6.435430 TTCGTCAAAATCTATCAACATGGG 57.565 37.500 0.00 0.00 0.00 4.00
347 348 5.739959 TCGTCAAAATCTATCAACATGGGA 58.260 37.500 0.00 0.00 0.00 4.37
348 349 6.356556 TCGTCAAAATCTATCAACATGGGAT 58.643 36.000 0.00 2.37 0.00 3.85
349 350 6.483307 TCGTCAAAATCTATCAACATGGGATC 59.517 38.462 5.52 0.00 0.00 3.36
350 351 6.484643 CGTCAAAATCTATCAACATGGGATCT 59.515 38.462 5.52 0.00 0.00 2.75
351 352 7.657354 CGTCAAAATCTATCAACATGGGATCTA 59.343 37.037 5.52 0.00 0.00 1.98
352 353 8.997323 GTCAAAATCTATCAACATGGGATCTAG 58.003 37.037 5.52 0.62 0.00 2.43
353 354 8.717717 TCAAAATCTATCAACATGGGATCTAGT 58.282 33.333 5.52 0.00 0.00 2.57
354 355 9.347240 CAAAATCTATCAACATGGGATCTAGTT 57.653 33.333 5.52 0.16 0.00 2.24
355 356 9.927081 AAAATCTATCAACATGGGATCTAGTTT 57.073 29.630 5.52 5.16 0.00 2.66
356 357 9.927081 AAATCTATCAACATGGGATCTAGTTTT 57.073 29.630 5.52 4.80 0.00 2.43
362 363 9.927081 ATCAACATGGGATCTAGTTTTAAAGAT 57.073 29.630 0.00 0.00 35.15 2.40
363 364 9.396022 TCAACATGGGATCTAGTTTTAAAGATC 57.604 33.333 0.00 6.39 44.88 2.75
364 365 9.401058 CAACATGGGATCTAGTTTTAAAGATCT 57.599 33.333 12.45 0.00 44.94 2.75
365 366 9.620259 AACATGGGATCTAGTTTTAAAGATCTC 57.380 33.333 12.45 10.10 45.96 2.75
368 369 7.933728 GGGATCTAGTTTTAAAGATCTCGAC 57.066 40.000 12.45 0.00 44.94 4.20
369 370 6.637658 GGGATCTAGTTTTAAAGATCTCGACG 59.362 42.308 12.45 0.00 44.94 5.12
370 371 6.142639 GGATCTAGTTTTAAAGATCTCGACGC 59.857 42.308 12.45 0.00 44.94 5.19
371 372 5.026462 TCTAGTTTTAAAGATCTCGACGCG 58.974 41.667 3.53 3.53 0.00 6.01
372 373 3.829948 AGTTTTAAAGATCTCGACGCGA 58.170 40.909 15.93 0.00 0.00 5.87
382 383 3.911989 TCGACGCGAGGAATCTAAC 57.088 52.632 15.93 0.00 0.00 2.34
383 384 1.089112 TCGACGCGAGGAATCTAACA 58.911 50.000 15.93 0.00 0.00 2.41
384 385 1.063616 TCGACGCGAGGAATCTAACAG 59.936 52.381 15.93 0.00 0.00 3.16
385 386 1.202154 CGACGCGAGGAATCTAACAGT 60.202 52.381 15.93 0.00 0.00 3.55
386 387 2.186076 GACGCGAGGAATCTAACAGTG 58.814 52.381 15.93 0.00 0.00 3.66
387 388 1.816835 ACGCGAGGAATCTAACAGTGA 59.183 47.619 15.93 0.00 0.00 3.41
388 389 2.230508 ACGCGAGGAATCTAACAGTGAA 59.769 45.455 15.93 0.00 0.00 3.18
389 390 3.250744 CGCGAGGAATCTAACAGTGAAA 58.749 45.455 0.00 0.00 0.00 2.69
390 391 3.678072 CGCGAGGAATCTAACAGTGAAAA 59.322 43.478 0.00 0.00 0.00 2.29
391 392 4.434330 CGCGAGGAATCTAACAGTGAAAAC 60.434 45.833 0.00 0.00 0.00 2.43
392 393 4.451096 GCGAGGAATCTAACAGTGAAAACA 59.549 41.667 0.00 0.00 0.00 2.83
393 394 5.389935 GCGAGGAATCTAACAGTGAAAACAG 60.390 44.000 0.00 0.00 0.00 3.16
394 395 5.696724 CGAGGAATCTAACAGTGAAAACAGT 59.303 40.000 0.00 0.00 0.00 3.55
395 396 6.202954 CGAGGAATCTAACAGTGAAAACAGTT 59.797 38.462 0.00 0.00 0.00 3.16
396 397 7.497925 AGGAATCTAACAGTGAAAACAGTTC 57.502 36.000 0.00 0.00 0.00 3.01
397 398 7.054124 AGGAATCTAACAGTGAAAACAGTTCA 58.946 34.615 0.00 0.00 0.00 3.18
398 399 7.556275 AGGAATCTAACAGTGAAAACAGTTCAA 59.444 33.333 0.00 0.00 0.00 2.69
399 400 7.857885 GGAATCTAACAGTGAAAACAGTTCAAG 59.142 37.037 0.00 0.00 0.00 3.02
400 401 8.506168 AATCTAACAGTGAAAACAGTTCAAGA 57.494 30.769 0.00 0.00 0.00 3.02
401 402 8.682936 ATCTAACAGTGAAAACAGTTCAAGAT 57.317 30.769 0.00 0.00 0.00 2.40
402 403 8.506168 TCTAACAGTGAAAACAGTTCAAGATT 57.494 30.769 0.00 0.00 0.00 2.40
403 404 8.956426 TCTAACAGTGAAAACAGTTCAAGATTT 58.044 29.630 0.00 0.00 0.00 2.17
404 405 7.816945 AACAGTGAAAACAGTTCAAGATTTG 57.183 32.000 0.00 0.00 0.00 2.32
405 406 7.156876 ACAGTGAAAACAGTTCAAGATTTGA 57.843 32.000 0.00 0.00 38.04 2.69
406 407 7.253422 ACAGTGAAAACAGTTCAAGATTTGAG 58.747 34.615 0.00 0.00 41.38 3.02
407 408 6.197842 CAGTGAAAACAGTTCAAGATTTGAGC 59.802 38.462 0.00 0.00 41.38 4.26
408 409 5.172053 GTGAAAACAGTTCAAGATTTGAGCG 59.828 40.000 0.00 0.00 44.40 5.03
409 410 2.977405 ACAGTTCAAGATTTGAGCGC 57.023 45.000 0.00 0.00 44.40 5.92
410 411 2.221169 ACAGTTCAAGATTTGAGCGCA 58.779 42.857 11.47 0.00 44.40 6.09
411 412 2.031682 ACAGTTCAAGATTTGAGCGCAC 60.032 45.455 11.47 3.13 44.40 5.34
412 413 2.031769 CAGTTCAAGATTTGAGCGCACA 60.032 45.455 11.47 6.87 44.40 4.57
413 414 2.225019 AGTTCAAGATTTGAGCGCACAG 59.775 45.455 11.47 0.00 44.40 3.66
414 415 1.882912 TCAAGATTTGAGCGCACAGT 58.117 45.000 11.47 1.79 34.08 3.55
415 416 2.221169 TCAAGATTTGAGCGCACAGTT 58.779 42.857 11.47 0.00 34.08 3.16
416 417 2.618241 TCAAGATTTGAGCGCACAGTTT 59.382 40.909 11.47 0.00 34.08 2.66
417 418 3.812609 TCAAGATTTGAGCGCACAGTTTA 59.187 39.130 11.47 0.00 34.08 2.01
418 419 4.274705 TCAAGATTTGAGCGCACAGTTTAA 59.725 37.500 11.47 0.33 34.08 1.52
419 420 4.829064 AGATTTGAGCGCACAGTTTAAA 57.171 36.364 11.47 0.00 0.00 1.52
420 421 4.787598 AGATTTGAGCGCACAGTTTAAAG 58.212 39.130 11.47 0.00 0.00 1.85
421 422 3.347958 TTTGAGCGCACAGTTTAAAGG 57.652 42.857 11.47 0.00 0.00 3.11
422 423 2.248280 TGAGCGCACAGTTTAAAGGA 57.752 45.000 11.47 0.00 0.00 3.36
423 424 2.778299 TGAGCGCACAGTTTAAAGGAT 58.222 42.857 11.47 0.00 0.00 3.24
424 425 3.932822 TGAGCGCACAGTTTAAAGGATA 58.067 40.909 11.47 0.00 0.00 2.59
425 426 4.320023 TGAGCGCACAGTTTAAAGGATAA 58.680 39.130 11.47 0.00 0.00 1.75
426 427 4.757657 TGAGCGCACAGTTTAAAGGATAAA 59.242 37.500 11.47 0.00 0.00 1.40
427 428 5.239744 TGAGCGCACAGTTTAAAGGATAAAA 59.760 36.000 11.47 0.00 0.00 1.52
428 429 5.458015 AGCGCACAGTTTAAAGGATAAAAC 58.542 37.500 11.47 0.00 36.13 2.43
429 430 4.319901 GCGCACAGTTTAAAGGATAAAACG 59.680 41.667 0.30 0.00 39.90 3.60
430 431 5.445845 CGCACAGTTTAAAGGATAAAACGT 58.554 37.500 0.00 0.00 39.90 3.99
431 432 5.910723 CGCACAGTTTAAAGGATAAAACGTT 59.089 36.000 0.00 0.00 39.90 3.99
432 433 6.415573 CGCACAGTTTAAAGGATAAAACGTTT 59.584 34.615 7.96 7.96 39.90 3.60
433 434 7.043920 CGCACAGTTTAAAGGATAAAACGTTTT 60.044 33.333 27.65 27.65 39.90 2.43
434 435 8.053653 GCACAGTTTAAAGGATAAAACGTTTTG 58.946 33.333 31.26 15.71 39.90 2.44
435 436 9.291664 CACAGTTTAAAGGATAAAACGTTTTGA 57.708 29.630 31.26 17.70 39.90 2.69
436 437 9.857957 ACAGTTTAAAGGATAAAACGTTTTGAA 57.142 25.926 31.26 16.35 39.90 2.69
450 451 8.889849 AAACGTTTTGAATAAATGGATCTACG 57.110 30.769 7.96 0.00 0.00 3.51
451 452 7.837202 ACGTTTTGAATAAATGGATCTACGA 57.163 32.000 0.00 0.00 0.00 3.43
452 453 8.259049 ACGTTTTGAATAAATGGATCTACGAA 57.741 30.769 0.00 0.00 0.00 3.85
453 454 8.723311 ACGTTTTGAATAAATGGATCTACGAAA 58.277 29.630 0.00 0.00 0.00 3.46
454 455 9.549509 CGTTTTGAATAAATGGATCTACGAAAA 57.450 29.630 0.00 0.00 0.00 2.29
485 486 8.499403 AAAAACTATCAGATGCTTAGGAAGAC 57.501 34.615 0.00 0.00 0.00 3.01
486 487 7.430760 AAACTATCAGATGCTTAGGAAGACT 57.569 36.000 0.00 0.00 0.00 3.24
487 488 6.403866 ACTATCAGATGCTTAGGAAGACTG 57.596 41.667 0.00 0.00 0.00 3.51
488 489 4.686191 ATCAGATGCTTAGGAAGACTGG 57.314 45.455 0.00 0.00 0.00 4.00
489 490 2.768527 TCAGATGCTTAGGAAGACTGGG 59.231 50.000 0.00 0.00 0.00 4.45
490 491 1.488393 AGATGCTTAGGAAGACTGGGC 59.512 52.381 0.00 0.00 0.00 5.36
491 492 0.179000 ATGCTTAGGAAGACTGGGCG 59.821 55.000 0.00 0.00 32.96 6.13
492 493 0.902984 TGCTTAGGAAGACTGGGCGA 60.903 55.000 0.00 0.00 32.96 5.54
493 494 0.466124 GCTTAGGAAGACTGGGCGAT 59.534 55.000 0.00 0.00 0.00 4.58
494 495 1.808133 GCTTAGGAAGACTGGGCGATG 60.808 57.143 0.00 0.00 0.00 3.84
495 496 0.830648 TTAGGAAGACTGGGCGATGG 59.169 55.000 0.00 0.00 0.00 3.51
496 497 1.686325 TAGGAAGACTGGGCGATGGC 61.686 60.000 0.00 0.00 38.90 4.40
497 498 2.268920 GAAGACTGGGCGATGGCA 59.731 61.111 1.01 0.00 42.47 4.92
498 499 1.817099 GAAGACTGGGCGATGGCAG 60.817 63.158 1.01 0.00 42.47 4.85
499 500 3.984193 AAGACTGGGCGATGGCAGC 62.984 63.158 1.01 0.00 42.47 5.25
500 501 4.479993 GACTGGGCGATGGCAGCT 62.480 66.667 0.00 0.00 42.47 4.24
501 502 4.479993 ACTGGGCGATGGCAGCTC 62.480 66.667 0.00 0.00 42.47 4.09
505 506 3.550431 GGCGATGGCAGCTCCCTA 61.550 66.667 0.00 0.00 42.47 3.53
506 507 2.505982 GCGATGGCAGCTCCCTAA 59.494 61.111 0.00 0.00 39.62 2.69
507 508 1.153168 GCGATGGCAGCTCCCTAAA 60.153 57.895 0.00 0.00 39.62 1.85
508 509 0.536006 GCGATGGCAGCTCCCTAAAT 60.536 55.000 0.00 0.00 39.62 1.40
509 510 1.270839 GCGATGGCAGCTCCCTAAATA 60.271 52.381 0.00 0.00 39.62 1.40
510 511 2.616510 GCGATGGCAGCTCCCTAAATAT 60.617 50.000 0.00 0.00 39.62 1.28
511 512 3.005554 CGATGGCAGCTCCCTAAATATG 58.994 50.000 0.00 0.00 0.00 1.78
512 513 2.957402 TGGCAGCTCCCTAAATATGG 57.043 50.000 0.00 0.00 0.00 2.74
513 514 2.417652 TGGCAGCTCCCTAAATATGGA 58.582 47.619 0.00 0.00 0.00 3.41
514 515 2.782925 TGGCAGCTCCCTAAATATGGAA 59.217 45.455 0.00 0.00 0.00 3.53
515 516 3.398967 TGGCAGCTCCCTAAATATGGAAT 59.601 43.478 0.00 0.00 0.00 3.01
516 517 4.601420 TGGCAGCTCCCTAAATATGGAATA 59.399 41.667 0.00 0.00 0.00 1.75
517 518 5.074377 TGGCAGCTCCCTAAATATGGAATAA 59.926 40.000 0.00 0.00 29.06 1.40
518 519 6.190587 GGCAGCTCCCTAAATATGGAATAAT 58.809 40.000 0.00 0.00 29.06 1.28
519 520 6.096001 GGCAGCTCCCTAAATATGGAATAATG 59.904 42.308 0.00 0.00 29.06 1.90
520 521 6.660949 GCAGCTCCCTAAATATGGAATAATGT 59.339 38.462 0.00 0.00 29.06 2.71
521 522 7.177392 GCAGCTCCCTAAATATGGAATAATGTT 59.823 37.037 0.00 0.00 29.06 2.71
522 523 8.517878 CAGCTCCCTAAATATGGAATAATGTTG 58.482 37.037 0.00 0.00 29.06 3.33
523 524 7.177392 AGCTCCCTAAATATGGAATAATGTTGC 59.823 37.037 0.00 0.00 29.06 4.17
524 525 7.177392 GCTCCCTAAATATGGAATAATGTTGCT 59.823 37.037 0.00 0.00 29.06 3.91
525 526 8.408043 TCCCTAAATATGGAATAATGTTGCTG 57.592 34.615 0.00 0.00 29.06 4.41
526 527 7.039784 TCCCTAAATATGGAATAATGTTGCTGC 60.040 37.037 0.00 0.00 29.06 5.25
527 528 7.039504 CCCTAAATATGGAATAATGTTGCTGCT 60.040 37.037 0.00 0.00 29.06 4.24
528 529 9.013229 CCTAAATATGGAATAATGTTGCTGCTA 57.987 33.333 0.00 0.00 29.06 3.49
531 532 9.533253 AAATATGGAATAATGTTGCTGCTAAAC 57.467 29.630 0.00 0.00 29.06 2.01
532 533 4.980590 TGGAATAATGTTGCTGCTAAACG 58.019 39.130 0.00 0.00 0.00 3.60
533 534 4.697828 TGGAATAATGTTGCTGCTAAACGA 59.302 37.500 0.00 0.00 0.00 3.85
534 535 5.356751 TGGAATAATGTTGCTGCTAAACGAT 59.643 36.000 0.00 0.00 0.00 3.73
535 536 6.540551 TGGAATAATGTTGCTGCTAAACGATA 59.459 34.615 0.00 0.00 0.00 2.92
536 537 7.072030 GGAATAATGTTGCTGCTAAACGATAG 58.928 38.462 0.00 0.00 46.19 2.08
537 538 3.951979 ATGTTGCTGCTAAACGATAGC 57.048 42.857 15.06 15.06 40.76 2.97
538 539 2.694213 TGTTGCTGCTAAACGATAGCA 58.306 42.857 20.68 20.68 47.00 3.49
544 545 2.694213 TGCTAAACGATAGCAGCAACA 58.306 42.857 18.96 1.49 44.65 3.33
545 546 3.270027 TGCTAAACGATAGCAGCAACAT 58.730 40.909 18.96 0.00 44.65 2.71
546 547 3.063861 TGCTAAACGATAGCAGCAACATG 59.936 43.478 18.96 0.00 44.65 3.21
547 548 2.549633 AAACGATAGCAGCAACATGC 57.450 45.000 0.00 0.00 46.88 4.06
553 554 2.803670 GCAGCAACATGCAGCGTG 60.804 61.111 13.43 13.43 45.45 5.34
556 557 4.345962 GCAACATGCAGCGTGCCA 62.346 61.111 14.97 0.00 44.23 4.92
557 558 2.429571 CAACATGCAGCGTGCCAC 60.430 61.111 14.97 0.00 44.23 5.01
558 559 2.595463 AACATGCAGCGTGCCACT 60.595 55.556 14.97 0.00 44.23 4.00
559 560 2.195567 AACATGCAGCGTGCCACTT 61.196 52.632 14.97 0.00 44.23 3.16
560 561 2.126618 CATGCAGCGTGCCACTTG 60.127 61.111 0.46 0.00 44.23 3.16
561 562 2.595463 ATGCAGCGTGCCACTTGT 60.595 55.556 7.38 0.00 44.23 3.16
562 563 2.620112 ATGCAGCGTGCCACTTGTC 61.620 57.895 7.38 0.00 44.23 3.18
563 564 4.374702 GCAGCGTGCCACTTGTCG 62.375 66.667 0.00 0.00 37.42 4.35
566 567 3.947841 GCGTGCCACTTGTCGCAA 61.948 61.111 0.00 0.00 46.40 4.85
567 568 2.945984 CGTGCCACTTGTCGCAAT 59.054 55.556 0.00 0.00 36.60 3.56
568 569 1.154413 CGTGCCACTTGTCGCAATC 60.154 57.895 0.00 0.00 36.60 2.67
569 570 1.568612 CGTGCCACTTGTCGCAATCT 61.569 55.000 0.00 0.00 36.60 2.40
570 571 1.438651 GTGCCACTTGTCGCAATCTA 58.561 50.000 0.00 0.00 36.60 1.98
571 572 1.394917 GTGCCACTTGTCGCAATCTAG 59.605 52.381 0.00 0.00 36.60 2.43
572 573 1.009829 GCCACTTGTCGCAATCTAGG 58.990 55.000 0.00 0.00 0.00 3.02
573 574 1.656652 CCACTTGTCGCAATCTAGGG 58.343 55.000 0.00 0.00 0.00 3.53
574 575 1.207089 CCACTTGTCGCAATCTAGGGA 59.793 52.381 0.00 0.00 0.00 4.20
575 576 2.354704 CCACTTGTCGCAATCTAGGGAA 60.355 50.000 0.00 0.00 31.92 3.97
576 577 2.932614 CACTTGTCGCAATCTAGGGAAG 59.067 50.000 0.00 0.00 31.92 3.46
577 578 2.093447 ACTTGTCGCAATCTAGGGAAGG 60.093 50.000 0.00 0.00 31.92 3.46
578 579 1.568504 TGTCGCAATCTAGGGAAGGT 58.431 50.000 0.00 0.00 31.92 3.50
579 580 1.207089 TGTCGCAATCTAGGGAAGGTG 59.793 52.381 0.00 0.00 31.92 4.00
580 581 1.207329 GTCGCAATCTAGGGAAGGTGT 59.793 52.381 0.00 0.00 31.92 4.16
581 582 1.207089 TCGCAATCTAGGGAAGGTGTG 59.793 52.381 0.00 0.00 0.00 3.82
582 583 1.207089 CGCAATCTAGGGAAGGTGTGA 59.793 52.381 0.00 0.00 0.00 3.58
583 584 2.739932 CGCAATCTAGGGAAGGTGTGAG 60.740 54.545 0.00 0.00 0.00 3.51
584 585 2.237392 GCAATCTAGGGAAGGTGTGAGT 59.763 50.000 0.00 0.00 0.00 3.41
585 586 3.866651 CAATCTAGGGAAGGTGTGAGTG 58.133 50.000 0.00 0.00 0.00 3.51
586 587 2.992847 TCTAGGGAAGGTGTGAGTGA 57.007 50.000 0.00 0.00 0.00 3.41
587 588 3.474798 TCTAGGGAAGGTGTGAGTGAT 57.525 47.619 0.00 0.00 0.00 3.06
588 589 3.366396 TCTAGGGAAGGTGTGAGTGATC 58.634 50.000 0.00 0.00 0.00 2.92
589 590 2.334006 AGGGAAGGTGTGAGTGATCT 57.666 50.000 0.00 0.00 0.00 2.75
590 591 2.625639 AGGGAAGGTGTGAGTGATCTT 58.374 47.619 0.00 0.00 0.00 2.40
591 592 2.982488 AGGGAAGGTGTGAGTGATCTTT 59.018 45.455 0.00 0.00 0.00 2.52
592 593 3.077359 GGGAAGGTGTGAGTGATCTTTG 58.923 50.000 0.00 0.00 0.00 2.77
593 594 2.485814 GGAAGGTGTGAGTGATCTTTGC 59.514 50.000 0.00 0.00 0.00 3.68
594 595 2.936919 AGGTGTGAGTGATCTTTGCA 57.063 45.000 0.00 0.00 0.00 4.08
595 596 3.213206 AGGTGTGAGTGATCTTTGCAA 57.787 42.857 0.00 0.00 0.00 4.08
596 597 3.759581 AGGTGTGAGTGATCTTTGCAAT 58.240 40.909 0.00 0.00 0.00 3.56
597 598 3.504906 AGGTGTGAGTGATCTTTGCAATG 59.495 43.478 0.00 2.27 0.00 2.82
598 599 3.503363 GGTGTGAGTGATCTTTGCAATGA 59.497 43.478 16.45 16.45 0.00 2.57
599 600 4.379186 GGTGTGAGTGATCTTTGCAATGAG 60.379 45.833 18.58 6.50 0.00 2.90
600 601 4.214971 GTGTGAGTGATCTTTGCAATGAGT 59.785 41.667 18.58 8.54 0.00 3.41
601 602 5.409520 GTGTGAGTGATCTTTGCAATGAGTA 59.590 40.000 18.58 8.67 0.00 2.59
602 603 5.409520 TGTGAGTGATCTTTGCAATGAGTAC 59.590 40.000 18.58 17.73 0.00 2.73
603 604 5.641209 GTGAGTGATCTTTGCAATGAGTACT 59.359 40.000 22.92 22.92 0.00 2.73
604 605 5.871524 TGAGTGATCTTTGCAATGAGTACTC 59.128 40.000 30.32 30.32 33.94 2.59
605 606 5.181748 AGTGATCTTTGCAATGAGTACTCC 58.818 41.667 20.11 5.22 0.00 3.85
606 607 5.046014 AGTGATCTTTGCAATGAGTACTCCT 60.046 40.000 20.11 7.68 0.00 3.69
607 608 5.293079 GTGATCTTTGCAATGAGTACTCCTC 59.707 44.000 20.11 10.76 40.89 3.71
620 621 6.670077 GAGTACTCCTCAATTGGTGATTTC 57.330 41.667 12.13 0.00 40.17 2.17
621 622 5.178797 AGTACTCCTCAATTGGTGATTTCG 58.821 41.667 5.42 0.00 35.07 3.46
622 623 2.749621 ACTCCTCAATTGGTGATTTCGC 59.250 45.455 5.42 0.00 35.07 4.70
623 624 2.749076 CTCCTCAATTGGTGATTTCGCA 59.251 45.455 5.42 0.00 35.07 5.10
624 625 2.749076 TCCTCAATTGGTGATTTCGCAG 59.251 45.455 5.42 0.00 35.07 5.18
625 626 2.489329 CCTCAATTGGTGATTTCGCAGT 59.511 45.455 5.42 0.00 35.07 4.40
626 627 3.426695 CCTCAATTGGTGATTTCGCAGTC 60.427 47.826 5.42 0.00 35.07 3.51
627 628 3.411446 TCAATTGGTGATTTCGCAGTCT 58.589 40.909 5.42 0.00 0.00 3.24
628 629 3.820467 TCAATTGGTGATTTCGCAGTCTT 59.180 39.130 5.42 0.00 0.00 3.01
629 630 4.278170 TCAATTGGTGATTTCGCAGTCTTT 59.722 37.500 5.42 0.00 0.00 2.52
630 631 4.853924 ATTGGTGATTTCGCAGTCTTTT 57.146 36.364 0.00 0.00 0.00 2.27
631 632 5.957842 ATTGGTGATTTCGCAGTCTTTTA 57.042 34.783 0.00 0.00 0.00 1.52
632 633 4.742438 TGGTGATTTCGCAGTCTTTTAC 57.258 40.909 0.00 0.00 0.00 2.01
633 634 3.500680 TGGTGATTTCGCAGTCTTTTACC 59.499 43.478 0.00 0.00 0.00 2.85
634 635 3.119955 GGTGATTTCGCAGTCTTTTACCC 60.120 47.826 0.00 0.00 0.00 3.69
635 636 3.500680 GTGATTTCGCAGTCTTTTACCCA 59.499 43.478 0.00 0.00 0.00 4.51
636 637 4.023536 GTGATTTCGCAGTCTTTTACCCAA 60.024 41.667 0.00 0.00 0.00 4.12
637 638 4.580995 TGATTTCGCAGTCTTTTACCCAAA 59.419 37.500 0.00 0.00 0.00 3.28
638 639 4.985538 TTTCGCAGTCTTTTACCCAAAA 57.014 36.364 0.00 0.00 32.73 2.44
639 640 4.985538 TTCGCAGTCTTTTACCCAAAAA 57.014 36.364 0.00 0.00 33.33 1.94
679 680 7.481275 TTTCTTTCAAGAATCACATTTTGCC 57.519 32.000 2.83 0.00 43.92 4.52
680 681 6.159299 TCTTTCAAGAATCACATTTTGCCA 57.841 33.333 0.00 0.00 30.73 4.92
681 682 6.580788 TCTTTCAAGAATCACATTTTGCCAA 58.419 32.000 0.00 0.00 30.73 4.52
682 683 7.218614 TCTTTCAAGAATCACATTTTGCCAAT 58.781 30.769 0.00 0.00 30.73 3.16
683 684 7.716123 TCTTTCAAGAATCACATTTTGCCAATT 59.284 29.630 0.00 0.00 30.73 2.32
684 685 8.899427 TTTCAAGAATCACATTTTGCCAATTA 57.101 26.923 0.00 0.00 0.00 1.40
685 686 8.899427 TTCAAGAATCACATTTTGCCAATTAA 57.101 26.923 0.00 0.00 0.00 1.40
686 687 8.537049 TCAAGAATCACATTTTGCCAATTAAG 57.463 30.769 0.00 0.00 0.00 1.85
687 688 6.973229 AGAATCACATTTTGCCAATTAAGC 57.027 33.333 0.00 0.00 0.00 3.09
688 689 5.577945 AGAATCACATTTTGCCAATTAAGCG 59.422 36.000 0.00 0.00 0.00 4.68
689 690 4.511617 TCACATTTTGCCAATTAAGCGA 57.488 36.364 0.00 0.00 0.00 4.93
690 691 4.484236 TCACATTTTGCCAATTAAGCGAG 58.516 39.130 0.00 0.00 0.00 5.03
691 692 4.217334 TCACATTTTGCCAATTAAGCGAGA 59.783 37.500 0.00 0.00 0.00 4.04
692 693 4.324402 CACATTTTGCCAATTAAGCGAGAC 59.676 41.667 0.00 0.00 0.00 3.36
693 694 4.022416 ACATTTTGCCAATTAAGCGAGACA 60.022 37.500 0.00 0.00 0.00 3.41
694 695 3.552604 TTTGCCAATTAAGCGAGACAC 57.447 42.857 0.00 0.00 0.00 3.67
695 696 2.177394 TGCCAATTAAGCGAGACACA 57.823 45.000 0.00 0.00 0.00 3.72
696 697 2.076100 TGCCAATTAAGCGAGACACAG 58.924 47.619 0.00 0.00 0.00 3.66
697 698 2.076863 GCCAATTAAGCGAGACACAGT 58.923 47.619 0.00 0.00 0.00 3.55
698 699 2.094417 GCCAATTAAGCGAGACACAGTC 59.906 50.000 0.00 0.00 0.00 3.51
699 700 2.345641 CCAATTAAGCGAGACACAGTCG 59.654 50.000 0.00 0.00 37.67 4.18
704 705 2.179517 CGAGACACAGTCGCTCCC 59.820 66.667 0.00 0.00 37.67 4.30
705 706 2.626780 CGAGACACAGTCGCTCCCA 61.627 63.158 0.00 0.00 37.67 4.37
706 707 1.080434 GAGACACAGTCGCTCCCAC 60.080 63.158 0.00 0.00 37.67 4.61
707 708 1.806461 GAGACACAGTCGCTCCCACA 61.806 60.000 0.00 0.00 37.67 4.17
708 709 1.188219 AGACACAGTCGCTCCCACAT 61.188 55.000 0.00 0.00 37.67 3.21
709 710 0.320771 GACACAGTCGCTCCCACATT 60.321 55.000 0.00 0.00 0.00 2.71
710 711 0.973632 ACACAGTCGCTCCCACATTA 59.026 50.000 0.00 0.00 0.00 1.90
711 712 1.555075 ACACAGTCGCTCCCACATTAT 59.445 47.619 0.00 0.00 0.00 1.28
712 713 2.764010 ACACAGTCGCTCCCACATTATA 59.236 45.455 0.00 0.00 0.00 0.98
713 714 3.181475 ACACAGTCGCTCCCACATTATAG 60.181 47.826 0.00 0.00 0.00 1.31
714 715 2.224066 ACAGTCGCTCCCACATTATAGC 60.224 50.000 0.00 0.00 0.00 2.97
717 718 3.305709 GCTCCCACATTATAGCGCA 57.694 52.632 11.47 0.00 0.00 6.09
718 719 1.593196 GCTCCCACATTATAGCGCAA 58.407 50.000 11.47 0.00 0.00 4.85
719 720 1.946768 GCTCCCACATTATAGCGCAAA 59.053 47.619 11.47 0.31 0.00 3.68
720 721 2.554032 GCTCCCACATTATAGCGCAAAT 59.446 45.455 11.47 5.17 0.00 2.32
721 722 3.004734 GCTCCCACATTATAGCGCAAATT 59.995 43.478 11.47 0.00 0.00 1.82
722 723 4.499696 GCTCCCACATTATAGCGCAAATTT 60.500 41.667 11.47 0.00 0.00 1.82
723 724 5.181690 TCCCACATTATAGCGCAAATTTC 57.818 39.130 11.47 0.00 0.00 2.17
724 725 4.642437 TCCCACATTATAGCGCAAATTTCA 59.358 37.500 11.47 0.00 0.00 2.69
725 726 4.977963 CCCACATTATAGCGCAAATTTCAG 59.022 41.667 11.47 0.00 0.00 3.02
726 727 4.442073 CCACATTATAGCGCAAATTTCAGC 59.558 41.667 11.47 6.34 0.00 4.26
727 728 4.442073 CACATTATAGCGCAAATTTCAGCC 59.558 41.667 11.47 0.00 0.00 4.85
728 729 3.708563 TTATAGCGCAAATTTCAGCCC 57.291 42.857 11.47 0.00 0.00 5.19
729 730 1.473258 ATAGCGCAAATTTCAGCCCA 58.527 45.000 11.47 1.31 0.00 5.36
730 731 1.252175 TAGCGCAAATTTCAGCCCAA 58.748 45.000 11.47 0.00 0.00 4.12
731 732 0.609662 AGCGCAAATTTCAGCCCAAT 59.390 45.000 11.47 0.00 0.00 3.16
732 733 1.824230 AGCGCAAATTTCAGCCCAATA 59.176 42.857 11.47 0.00 0.00 1.90
733 734 2.233431 AGCGCAAATTTCAGCCCAATAA 59.767 40.909 11.47 0.00 0.00 1.40
734 735 2.999355 GCGCAAATTTCAGCCCAATAAA 59.001 40.909 0.30 0.00 0.00 1.40
735 736 3.181521 GCGCAAATTTCAGCCCAATAAAC 60.182 43.478 0.30 0.00 0.00 2.01
736 737 3.993081 CGCAAATTTCAGCCCAATAAACA 59.007 39.130 0.00 0.00 0.00 2.83
737 738 4.091800 CGCAAATTTCAGCCCAATAAACAG 59.908 41.667 0.00 0.00 0.00 3.16
738 739 4.392754 GCAAATTTCAGCCCAATAAACAGG 59.607 41.667 0.00 0.00 0.00 4.00
739 740 3.893326 ATTTCAGCCCAATAAACAGGC 57.107 42.857 0.00 0.00 0.00 4.85
740 741 1.555967 TTCAGCCCAATAAACAGGCC 58.444 50.000 0.00 0.00 0.00 5.19
741 742 0.679640 TCAGCCCAATAAACAGGCCG 60.680 55.000 0.00 0.00 0.00 6.13
742 743 0.679640 CAGCCCAATAAACAGGCCGA 60.680 55.000 0.00 0.00 0.00 5.54
743 744 0.039035 AGCCCAATAAACAGGCCGAA 59.961 50.000 0.00 0.00 0.00 4.30
744 745 1.111277 GCCCAATAAACAGGCCGAAT 58.889 50.000 0.00 0.00 0.00 3.34
745 746 1.480545 GCCCAATAAACAGGCCGAATT 59.519 47.619 0.00 0.00 0.00 2.17
746 747 2.093711 GCCCAATAAACAGGCCGAATTT 60.094 45.455 0.00 1.82 0.00 1.82
747 748 3.780902 CCCAATAAACAGGCCGAATTTC 58.219 45.455 0.00 0.00 0.00 2.17
748 749 3.194542 CCCAATAAACAGGCCGAATTTCA 59.805 43.478 0.00 0.00 0.00 2.69
749 750 4.423732 CCAATAAACAGGCCGAATTTCAG 58.576 43.478 0.00 0.00 0.00 3.02
750 751 3.782889 ATAAACAGGCCGAATTTCAGC 57.217 42.857 0.00 0.00 0.00 4.26
754 755 4.536687 GGCCGAATTTCAGCCGCG 62.537 66.667 7.86 0.00 36.84 6.46
755 756 4.536687 GCCGAATTTCAGCCGCGG 62.537 66.667 24.05 24.05 44.47 6.46
756 757 2.817834 CCGAATTTCAGCCGCGGA 60.818 61.111 33.48 7.91 44.43 5.54
757 758 2.395360 CCGAATTTCAGCCGCGGAA 61.395 57.895 33.48 15.39 44.43 4.30
758 759 1.226018 CGAATTTCAGCCGCGGAAC 60.226 57.895 33.48 12.91 0.00 3.62
806 812 1.254284 CCGCCCAATAAACAGGCCAA 61.254 55.000 5.01 0.00 0.00 4.52
815 821 5.240121 CAATAAACAGGCCAAATTTCAGCT 58.760 37.500 5.01 0.00 0.00 4.24
825 831 1.181098 AATTTCAGCTGCGGCAGGTT 61.181 50.000 30.18 14.65 40.40 3.50
826 832 1.181098 ATTTCAGCTGCGGCAGGTTT 61.181 50.000 30.18 13.69 40.40 3.27
846 852 1.216710 GACTGAGGCCCAAGACGAG 59.783 63.158 9.23 0.00 0.00 4.18
1896 1913 4.879295 TCCCAATCTCCCAATGTACAAT 57.121 40.909 0.00 0.00 0.00 2.71
1907 1924 3.796178 CCAATGTACAATGCCGTAATTGC 59.204 43.478 5.33 0.00 40.54 3.56
1956 1973 1.880340 CGCCTTCCAGATGCTCGAC 60.880 63.158 0.00 0.00 0.00 4.20
1965 1982 0.108186 AGATGCTCGACGAAATGCCA 60.108 50.000 0.00 0.00 0.00 4.92
1991 2008 1.425066 TGGGGTCTTTGCAGATTCTGT 59.575 47.619 14.90 0.00 33.43 3.41
2058 2075 2.698797 TCGTGAGACTGAAGGTTTCCTT 59.301 45.455 0.28 0.28 40.50 3.36
2091 2108 3.308014 GAACGAGCAGCTGCCCTCT 62.308 63.158 34.39 17.05 43.38 3.69
2221 2238 6.006275 AGGAATCAGCCAAAGAGCTAATAA 57.994 37.500 0.00 0.00 42.61 1.40
2248 2265 3.615351 GCTTCTCGACTTTAGCAGGTTCT 60.615 47.826 0.00 0.00 33.88 3.01
2400 2417 0.604243 TGAAGCGGCGGTAACAACAT 60.604 50.000 13.69 0.00 0.00 2.71
2481 2498 4.183101 GGTGATTGCCATTTATTGTGTGG 58.817 43.478 0.00 0.00 36.09 4.17
2486 2503 4.517952 TGCCATTTATTGTGTGGAACTG 57.482 40.909 0.00 0.00 38.04 3.16
2577 2594 5.733620 TTCCAGATTACTACTTTCGTGGT 57.266 39.130 0.00 0.00 38.49 4.16
2646 2663 0.904865 AGGAATCGTCAGGCTCCACA 60.905 55.000 0.00 0.00 0.00 4.17
2647 2664 0.036388 GGAATCGTCAGGCTCCACAA 60.036 55.000 0.00 0.00 0.00 3.33
2718 2736 7.039993 GCCTAATTTTGGGAAGTCTGACTTTTA 60.040 37.037 22.80 14.17 38.80 1.52
2784 2802 2.701423 GGGTTGGAGGAAGAGAGGATAC 59.299 54.545 0.00 0.00 0.00 2.24
2862 2883 2.120737 AACAGCCGGGGTCACCTTAC 62.121 60.000 2.18 0.00 36.97 2.34
3237 3259 5.592104 TTTCTTCCCTTCAAAACAGTTCC 57.408 39.130 0.00 0.00 0.00 3.62
3286 3308 1.915489 TCAAAGCCTTGCCTAGATCCA 59.085 47.619 0.00 0.00 32.14 3.41
3352 3771 3.442273 CCGCATTACCCATGTGTAAAACT 59.558 43.478 4.84 0.00 41.26 2.66
3381 3800 6.112927 AGGGAAGGTATACTACTAGACTCG 57.887 45.833 2.25 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.927668 TGAAATTTTCTTATCCAAAAGCTAAGG 57.072 29.630 10.33 0.00 0.00 2.69
52 53 6.799925 GTGACTCTCGTGAAAGAAAACAAAAA 59.200 34.615 0.00 0.00 0.00 1.94
53 54 6.311723 GTGACTCTCGTGAAAGAAAACAAAA 58.688 36.000 0.00 0.00 0.00 2.44
54 55 5.445407 CGTGACTCTCGTGAAAGAAAACAAA 60.445 40.000 0.00 0.00 0.00 2.83
55 56 4.032445 CGTGACTCTCGTGAAAGAAAACAA 59.968 41.667 0.00 0.00 0.00 2.83
56 57 3.550275 CGTGACTCTCGTGAAAGAAAACA 59.450 43.478 0.00 0.00 0.00 2.83
57 58 3.060473 CCGTGACTCTCGTGAAAGAAAAC 60.060 47.826 0.24 0.00 0.00 2.43
58 59 3.120792 CCGTGACTCTCGTGAAAGAAAA 58.879 45.455 0.24 0.00 0.00 2.29
59 60 2.100252 ACCGTGACTCTCGTGAAAGAAA 59.900 45.455 0.24 0.00 0.00 2.52
60 61 1.679680 ACCGTGACTCTCGTGAAAGAA 59.320 47.619 0.24 0.00 0.00 2.52
61 62 1.315690 ACCGTGACTCTCGTGAAAGA 58.684 50.000 0.24 0.00 0.00 2.52
62 63 2.135664 AACCGTGACTCTCGTGAAAG 57.864 50.000 0.24 0.00 0.00 2.62
63 64 2.589798 AAACCGTGACTCTCGTGAAA 57.410 45.000 0.24 0.00 0.00 2.69
64 65 2.198406 CAAAACCGTGACTCTCGTGAA 58.802 47.619 0.24 0.00 0.00 3.18
65 66 1.135527 ACAAAACCGTGACTCTCGTGA 59.864 47.619 0.24 0.00 0.00 4.35
66 67 1.567504 ACAAAACCGTGACTCTCGTG 58.432 50.000 0.24 0.00 0.00 4.35
67 68 2.304751 AACAAAACCGTGACTCTCGT 57.695 45.000 0.24 0.00 0.00 4.18
68 69 2.033151 GGAAACAAAACCGTGACTCTCG 60.033 50.000 0.00 0.00 0.00 4.04
69 70 2.940410 TGGAAACAAAACCGTGACTCTC 59.060 45.455 0.00 0.00 37.44 3.20
70 71 2.681344 GTGGAAACAAAACCGTGACTCT 59.319 45.455 0.00 0.00 46.06 3.24
71 72 2.420722 TGTGGAAACAAAACCGTGACTC 59.579 45.455 0.00 0.00 46.06 3.36
72 73 2.438411 TGTGGAAACAAAACCGTGACT 58.562 42.857 0.00 0.00 46.06 3.41
73 74 2.923605 TGTGGAAACAAAACCGTGAC 57.076 45.000 0.00 0.00 46.06 3.67
74 75 3.082548 TCTTGTGGAAACAAAACCGTGA 58.917 40.909 0.00 0.00 46.06 4.35
75 76 3.434637 CTCTTGTGGAAACAAAACCGTG 58.565 45.455 0.00 0.00 46.06 4.94
76 77 2.425668 CCTCTTGTGGAAACAAAACCGT 59.574 45.455 0.00 0.00 46.06 4.83
77 78 2.425668 ACCTCTTGTGGAAACAAAACCG 59.574 45.455 0.00 0.00 46.06 4.44
78 79 4.496840 CGTACCTCTTGTGGAAACAAAACC 60.497 45.833 0.00 0.00 46.06 3.27
79 80 4.496840 CCGTACCTCTTGTGGAAACAAAAC 60.497 45.833 0.00 0.00 46.06 2.43
80 81 3.628487 CCGTACCTCTTGTGGAAACAAAA 59.372 43.478 0.00 0.00 46.06 2.44
81 82 3.207778 CCGTACCTCTTGTGGAAACAAA 58.792 45.455 0.00 0.00 46.06 2.83
82 83 2.171027 ACCGTACCTCTTGTGGAAACAA 59.829 45.455 0.00 0.00 46.06 2.83
83 84 1.764134 ACCGTACCTCTTGTGGAAACA 59.236 47.619 0.00 0.00 38.70 2.83
84 85 2.538512 ACCGTACCTCTTGTGGAAAC 57.461 50.000 0.00 0.00 0.00 2.78
85 86 3.564053 AAACCGTACCTCTTGTGGAAA 57.436 42.857 0.00 0.00 0.00 3.13
86 87 3.207778 CAAAACCGTACCTCTTGTGGAA 58.792 45.455 0.00 0.00 0.00 3.53
87 88 2.841215 CAAAACCGTACCTCTTGTGGA 58.159 47.619 0.00 0.00 0.00 4.02
88 89 1.265905 GCAAAACCGTACCTCTTGTGG 59.734 52.381 0.00 0.00 0.00 4.17
89 90 2.218603 AGCAAAACCGTACCTCTTGTG 58.781 47.619 0.00 0.00 0.00 3.33
90 91 2.632987 AGCAAAACCGTACCTCTTGT 57.367 45.000 0.00 0.00 0.00 3.16
91 92 3.606153 CGAAAGCAAAACCGTACCTCTTG 60.606 47.826 0.00 0.00 0.00 3.02
92 93 2.546789 CGAAAGCAAAACCGTACCTCTT 59.453 45.455 0.00 0.00 0.00 2.85
93 94 2.140717 CGAAAGCAAAACCGTACCTCT 58.859 47.619 0.00 0.00 0.00 3.69
94 95 2.589338 CGAAAGCAAAACCGTACCTC 57.411 50.000 0.00 0.00 0.00 3.85
108 109 1.082104 GCCGTGACTTTGGCGAAAG 60.082 57.895 18.43 18.43 42.22 2.62
109 110 3.027292 GCCGTGACTTTGGCGAAA 58.973 55.556 0.00 0.00 42.22 3.46
165 166 0.958822 GCCTCTTGCGGAAGGAAAAA 59.041 50.000 17.16 0.00 42.23 1.94
166 167 0.179004 TGCCTCTTGCGGAAGGAAAA 60.179 50.000 17.16 0.00 45.60 2.29
167 168 0.889186 GTGCCTCTTGCGGAAGGAAA 60.889 55.000 17.16 0.00 45.60 3.13
168 169 1.302511 GTGCCTCTTGCGGAAGGAA 60.303 57.895 17.16 0.00 45.60 3.36
169 170 2.050836 TTGTGCCTCTTGCGGAAGGA 62.051 55.000 17.16 2.93 45.60 3.36
170 171 0.962356 ATTGTGCCTCTTGCGGAAGG 60.962 55.000 17.16 3.26 45.60 3.46
171 172 0.883833 AATTGTGCCTCTTGCGGAAG 59.116 50.000 10.87 10.87 45.60 3.46
172 173 1.327303 AAATTGTGCCTCTTGCGGAA 58.673 45.000 0.00 0.00 45.60 4.30
173 174 1.000385 CAAAATTGTGCCTCTTGCGGA 60.000 47.619 0.00 0.00 45.60 5.54
174 175 1.421382 CAAAATTGTGCCTCTTGCGG 58.579 50.000 0.00 0.00 45.60 5.69
175 176 0.785979 GCAAAATTGTGCCTCTTGCG 59.214 50.000 9.66 0.00 45.60 4.85
176 177 2.159327 AGCAAAATTGTGCCTCTTGC 57.841 45.000 17.19 8.69 46.14 4.01
177 178 3.182972 CGAAAGCAAAATTGTGCCTCTTG 59.817 43.478 17.19 2.37 46.14 3.02
178 179 3.181476 ACGAAAGCAAAATTGTGCCTCTT 60.181 39.130 17.19 8.30 46.14 2.85
179 180 2.362077 ACGAAAGCAAAATTGTGCCTCT 59.638 40.909 17.19 1.63 46.14 3.69
180 181 2.472488 CACGAAAGCAAAATTGTGCCTC 59.528 45.455 17.19 12.71 46.14 4.70
181 182 2.100584 TCACGAAAGCAAAATTGTGCCT 59.899 40.909 17.19 0.62 46.14 4.75
182 183 2.468831 TCACGAAAGCAAAATTGTGCC 58.531 42.857 17.19 1.14 46.14 5.01
183 184 3.371168 TCTCACGAAAGCAAAATTGTGC 58.629 40.909 13.02 13.02 45.28 4.57
184 185 3.976942 CCTCTCACGAAAGCAAAATTGTG 59.023 43.478 0.00 0.00 0.00 3.33
185 186 3.550842 GCCTCTCACGAAAGCAAAATTGT 60.551 43.478 0.00 0.00 0.00 2.71
186 187 2.982470 GCCTCTCACGAAAGCAAAATTG 59.018 45.455 0.00 0.00 0.00 2.32
187 188 2.622942 TGCCTCTCACGAAAGCAAAATT 59.377 40.909 0.00 0.00 0.00 1.82
188 189 2.030805 GTGCCTCTCACGAAAGCAAAAT 60.031 45.455 0.00 0.00 35.76 1.82
189 190 1.333619 GTGCCTCTCACGAAAGCAAAA 59.666 47.619 0.00 0.00 35.76 2.44
190 191 0.944386 GTGCCTCTCACGAAAGCAAA 59.056 50.000 0.00 0.00 35.76 3.68
191 192 2.616969 GTGCCTCTCACGAAAGCAA 58.383 52.632 0.00 0.00 35.76 3.91
192 193 4.361253 GTGCCTCTCACGAAAGCA 57.639 55.556 0.00 0.00 35.76 3.91
199 200 2.175878 ATCACAACTGTGCCTCTCAC 57.824 50.000 4.92 0.00 45.25 3.51
200 201 2.936919 AATCACAACTGTGCCTCTCA 57.063 45.000 4.92 0.00 45.25 3.27
201 202 3.854784 GCAAAATCACAACTGTGCCTCTC 60.855 47.826 4.92 0.00 45.25 3.20
202 203 2.035066 GCAAAATCACAACTGTGCCTCT 59.965 45.455 4.92 0.00 45.25 3.69
203 204 2.397549 GCAAAATCACAACTGTGCCTC 58.602 47.619 4.92 0.00 45.25 4.70
204 205 1.269206 CGCAAAATCACAACTGTGCCT 60.269 47.619 4.92 0.00 45.25 4.75
205 206 1.130955 CGCAAAATCACAACTGTGCC 58.869 50.000 4.92 0.00 45.25 5.01
206 207 2.046313 CTCGCAAAATCACAACTGTGC 58.954 47.619 4.92 0.00 45.25 4.57
207 208 3.248363 TCTCTCGCAAAATCACAACTGTG 59.752 43.478 3.33 3.33 46.91 3.66
208 209 3.248602 GTCTCTCGCAAAATCACAACTGT 59.751 43.478 0.00 0.00 0.00 3.55
209 210 3.248363 TGTCTCTCGCAAAATCACAACTG 59.752 43.478 0.00 0.00 0.00 3.16
210 211 3.248602 GTGTCTCTCGCAAAATCACAACT 59.751 43.478 0.00 0.00 0.00 3.16
211 212 3.002246 TGTGTCTCTCGCAAAATCACAAC 59.998 43.478 0.00 0.00 33.31 3.32
212 213 3.202097 TGTGTCTCTCGCAAAATCACAA 58.798 40.909 0.00 0.00 33.31 3.33
213 214 2.802247 CTGTGTCTCTCGCAAAATCACA 59.198 45.455 0.00 0.00 36.06 3.58
214 215 3.059884 TCTGTGTCTCTCGCAAAATCAC 58.940 45.455 0.00 0.00 36.06 3.06
215 216 3.059884 GTCTGTGTCTCTCGCAAAATCA 58.940 45.455 0.00 0.00 36.06 2.57
216 217 2.091277 CGTCTGTGTCTCTCGCAAAATC 59.909 50.000 0.00 0.00 36.06 2.17
217 218 2.061773 CGTCTGTGTCTCTCGCAAAAT 58.938 47.619 0.00 0.00 36.06 1.82
218 219 1.202371 ACGTCTGTGTCTCTCGCAAAA 60.202 47.619 0.00 0.00 36.06 2.44
219 220 0.384309 ACGTCTGTGTCTCTCGCAAA 59.616 50.000 0.00 0.00 36.06 3.68
220 221 0.317854 CACGTCTGTGTCTCTCGCAA 60.318 55.000 0.00 0.00 41.34 4.85
221 222 1.282875 CACGTCTGTGTCTCTCGCA 59.717 57.895 0.00 0.00 41.34 5.10
222 223 4.138722 CACGTCTGTGTCTCTCGC 57.861 61.111 0.00 0.00 41.34 5.03
231 232 1.006102 CCGAAAGAGGCACGTCTGT 60.006 57.895 0.00 0.00 0.00 3.41
232 233 0.319555 TTCCGAAAGAGGCACGTCTG 60.320 55.000 0.00 0.00 0.00 3.51
233 234 0.038159 CTTCCGAAAGAGGCACGTCT 60.038 55.000 0.00 0.00 34.14 4.18
234 235 1.014564 CCTTCCGAAAGAGGCACGTC 61.015 60.000 0.00 0.00 34.14 4.34
235 236 1.004918 CCTTCCGAAAGAGGCACGT 60.005 57.895 0.00 0.00 34.14 4.49
236 237 1.741770 CCCTTCCGAAAGAGGCACG 60.742 63.158 0.00 0.00 34.14 5.34
237 238 0.036306 TTCCCTTCCGAAAGAGGCAC 59.964 55.000 0.00 0.00 34.14 5.01
238 239 0.768622 TTTCCCTTCCGAAAGAGGCA 59.231 50.000 0.00 0.00 34.14 4.75
239 240 1.905637 TTTTCCCTTCCGAAAGAGGC 58.094 50.000 0.00 0.00 33.46 4.70
256 257 2.052782 AACCGAGAGCACAGGTTTTT 57.947 45.000 7.92 0.00 45.04 1.94
257 258 3.800826 AACCGAGAGCACAGGTTTT 57.199 47.368 7.92 0.00 45.04 2.43
260 261 2.651361 CGAACCGAGAGCACAGGT 59.349 61.111 0.00 0.00 40.50 4.00
261 262 2.125912 CCGAACCGAGAGCACAGG 60.126 66.667 0.00 0.00 0.00 4.00
262 263 0.600255 AAACCGAACCGAGAGCACAG 60.600 55.000 0.00 0.00 0.00 3.66
263 264 0.179067 AAAACCGAACCGAGAGCACA 60.179 50.000 0.00 0.00 0.00 4.57
264 265 0.942252 AAAAACCGAACCGAGAGCAC 59.058 50.000 0.00 0.00 0.00 4.40
265 266 3.390003 AAAAACCGAACCGAGAGCA 57.610 47.368 0.00 0.00 0.00 4.26
280 281 1.401199 ACGAAAAAGCCGGACGAAAAA 59.599 42.857 5.05 0.00 0.00 1.94
281 282 1.015868 ACGAAAAAGCCGGACGAAAA 58.984 45.000 5.05 0.00 0.00 2.29
282 283 1.015868 AACGAAAAAGCCGGACGAAA 58.984 45.000 5.05 0.00 0.00 3.46
283 284 1.015868 AAACGAAAAAGCCGGACGAA 58.984 45.000 5.05 0.00 0.00 3.85
284 285 1.794116 CTAAACGAAAAAGCCGGACGA 59.206 47.619 5.05 0.00 0.00 4.20
285 286 1.528161 ACTAAACGAAAAAGCCGGACG 59.472 47.619 5.05 2.70 0.00 4.79
286 287 3.614159 AACTAAACGAAAAAGCCGGAC 57.386 42.857 5.05 0.00 0.00 4.79
287 288 4.635833 AAAACTAAACGAAAAAGCCGGA 57.364 36.364 5.05 0.00 0.00 5.14
319 320 9.357652 CCATGTTGATAGATTTTGACGAATTTT 57.642 29.630 0.00 0.00 0.00 1.82
320 321 7.975616 CCCATGTTGATAGATTTTGACGAATTT 59.024 33.333 0.00 0.00 0.00 1.82
321 322 7.339212 TCCCATGTTGATAGATTTTGACGAATT 59.661 33.333 0.00 0.00 0.00 2.17
322 323 6.828273 TCCCATGTTGATAGATTTTGACGAAT 59.172 34.615 0.00 0.00 0.00 3.34
323 324 6.176896 TCCCATGTTGATAGATTTTGACGAA 58.823 36.000 0.00 0.00 0.00 3.85
324 325 5.739959 TCCCATGTTGATAGATTTTGACGA 58.260 37.500 0.00 0.00 0.00 4.20
325 326 6.484643 AGATCCCATGTTGATAGATTTTGACG 59.515 38.462 0.00 0.00 0.00 4.35
326 327 7.814264 AGATCCCATGTTGATAGATTTTGAC 57.186 36.000 0.00 0.00 0.00 3.18
327 328 8.717717 ACTAGATCCCATGTTGATAGATTTTGA 58.282 33.333 0.00 0.00 0.00 2.69
328 329 8.915057 ACTAGATCCCATGTTGATAGATTTTG 57.085 34.615 0.00 0.00 0.00 2.44
329 330 9.927081 AAACTAGATCCCATGTTGATAGATTTT 57.073 29.630 0.00 0.00 0.00 1.82
330 331 9.927081 AAAACTAGATCCCATGTTGATAGATTT 57.073 29.630 0.00 0.00 0.00 2.17
336 337 9.927081 ATCTTTAAAACTAGATCCCATGTTGAT 57.073 29.630 0.00 0.00 0.00 2.57
337 338 9.396022 GATCTTTAAAACTAGATCCCATGTTGA 57.604 33.333 0.00 0.00 40.45 3.18
338 339 9.401058 AGATCTTTAAAACTAGATCCCATGTTG 57.599 33.333 10.09 0.00 45.05 3.33
339 340 9.620259 GAGATCTTTAAAACTAGATCCCATGTT 57.380 33.333 10.09 0.00 45.05 2.71
340 341 7.928706 CGAGATCTTTAAAACTAGATCCCATGT 59.071 37.037 10.09 0.00 45.05 3.21
341 342 8.144478 TCGAGATCTTTAAAACTAGATCCCATG 58.856 37.037 10.09 0.00 45.05 3.66
342 343 8.145122 GTCGAGATCTTTAAAACTAGATCCCAT 58.855 37.037 10.09 0.00 45.05 4.00
343 344 7.490000 GTCGAGATCTTTAAAACTAGATCCCA 58.510 38.462 10.09 0.00 45.05 4.37
344 345 6.637658 CGTCGAGATCTTTAAAACTAGATCCC 59.362 42.308 10.09 0.40 45.05 3.85
345 346 6.142639 GCGTCGAGATCTTTAAAACTAGATCC 59.857 42.308 10.09 3.63 45.05 3.36
346 347 6.129665 CGCGTCGAGATCTTTAAAACTAGATC 60.130 42.308 0.00 6.74 44.54 2.75
347 348 5.681982 CGCGTCGAGATCTTTAAAACTAGAT 59.318 40.000 0.00 0.00 33.92 1.98
348 349 5.026462 CGCGTCGAGATCTTTAAAACTAGA 58.974 41.667 0.00 0.00 0.00 2.43
349 350 5.026462 TCGCGTCGAGATCTTTAAAACTAG 58.974 41.667 5.77 0.00 0.00 2.57
350 351 4.973396 TCGCGTCGAGATCTTTAAAACTA 58.027 39.130 5.77 0.00 0.00 2.24
351 352 3.829948 TCGCGTCGAGATCTTTAAAACT 58.170 40.909 5.77 0.00 0.00 2.66
364 365 1.063616 CTGTTAGATTCCTCGCGTCGA 59.936 52.381 5.77 0.00 0.00 4.20
365 366 1.202154 ACTGTTAGATTCCTCGCGTCG 60.202 52.381 5.77 0.00 0.00 5.12
366 367 2.159421 TCACTGTTAGATTCCTCGCGTC 60.159 50.000 5.77 0.00 0.00 5.19
367 368 1.816835 TCACTGTTAGATTCCTCGCGT 59.183 47.619 5.77 0.00 0.00 6.01
368 369 2.561733 TCACTGTTAGATTCCTCGCG 57.438 50.000 0.00 0.00 0.00 5.87
369 370 4.451096 TGTTTTCACTGTTAGATTCCTCGC 59.549 41.667 0.00 0.00 0.00 5.03
370 371 5.696724 ACTGTTTTCACTGTTAGATTCCTCG 59.303 40.000 0.00 0.00 31.29 4.63
371 372 7.226720 TGAACTGTTTTCACTGTTAGATTCCTC 59.773 37.037 0.00 0.00 43.15 3.71
372 373 7.054124 TGAACTGTTTTCACTGTTAGATTCCT 58.946 34.615 0.00 0.00 43.15 3.36
373 374 7.259290 TGAACTGTTTTCACTGTTAGATTCC 57.741 36.000 0.00 0.00 43.15 3.01
374 375 8.612619 TCTTGAACTGTTTTCACTGTTAGATTC 58.387 33.333 0.00 0.00 43.15 2.52
375 376 8.506168 TCTTGAACTGTTTTCACTGTTAGATT 57.494 30.769 0.00 0.00 43.15 2.40
376 377 8.682936 ATCTTGAACTGTTTTCACTGTTAGAT 57.317 30.769 0.00 2.48 43.15 1.98
377 378 8.506168 AATCTTGAACTGTTTTCACTGTTAGA 57.494 30.769 0.00 0.54 43.15 2.10
378 379 9.013490 CAAATCTTGAACTGTTTTCACTGTTAG 57.987 33.333 0.00 0.00 43.15 2.34
379 380 8.735315 TCAAATCTTGAACTGTTTTCACTGTTA 58.265 29.630 0.00 0.00 43.15 2.41
380 381 7.601856 TCAAATCTTGAACTGTTTTCACTGTT 58.398 30.769 0.00 0.00 45.10 3.16
381 382 7.156876 TCAAATCTTGAACTGTTTTCACTGT 57.843 32.000 0.00 0.00 36.59 3.55
382 383 6.197842 GCTCAAATCTTGAACTGTTTTCACTG 59.802 38.462 0.00 0.00 39.58 3.66
383 384 6.268566 GCTCAAATCTTGAACTGTTTTCACT 58.731 36.000 0.00 0.00 39.58 3.41
384 385 5.172053 CGCTCAAATCTTGAACTGTTTTCAC 59.828 40.000 0.00 0.00 39.58 3.18
385 386 5.273170 CGCTCAAATCTTGAACTGTTTTCA 58.727 37.500 0.00 0.00 39.58 2.69
386 387 4.147133 GCGCTCAAATCTTGAACTGTTTTC 59.853 41.667 0.00 0.00 39.58 2.29
387 388 4.044426 GCGCTCAAATCTTGAACTGTTTT 58.956 39.130 0.00 0.00 39.58 2.43
388 389 3.066621 TGCGCTCAAATCTTGAACTGTTT 59.933 39.130 9.73 0.00 39.58 2.83
389 390 2.618241 TGCGCTCAAATCTTGAACTGTT 59.382 40.909 9.73 0.00 39.58 3.16
390 391 2.031682 GTGCGCTCAAATCTTGAACTGT 60.032 45.455 9.73 0.00 39.58 3.55
391 392 2.031769 TGTGCGCTCAAATCTTGAACTG 60.032 45.455 10.16 0.00 39.58 3.16
392 393 2.221169 TGTGCGCTCAAATCTTGAACT 58.779 42.857 10.16 0.00 39.58 3.01
393 394 2.031682 ACTGTGCGCTCAAATCTTGAAC 60.032 45.455 13.78 0.00 39.58 3.18
394 395 2.221169 ACTGTGCGCTCAAATCTTGAA 58.779 42.857 13.78 0.00 39.58 2.69
395 396 1.882912 ACTGTGCGCTCAAATCTTGA 58.117 45.000 13.78 0.00 38.17 3.02
396 397 2.693797 AACTGTGCGCTCAAATCTTG 57.306 45.000 13.78 3.24 0.00 3.02
397 398 4.829064 TTAAACTGTGCGCTCAAATCTT 57.171 36.364 13.78 6.87 0.00 2.40
398 399 4.320494 CCTTTAAACTGTGCGCTCAAATCT 60.320 41.667 13.78 1.47 0.00 2.40
399 400 3.914364 CCTTTAAACTGTGCGCTCAAATC 59.086 43.478 13.78 0.00 0.00 2.17
400 401 3.568007 TCCTTTAAACTGTGCGCTCAAAT 59.432 39.130 13.78 1.85 0.00 2.32
401 402 2.946329 TCCTTTAAACTGTGCGCTCAAA 59.054 40.909 13.78 1.92 0.00 2.69
402 403 2.566913 TCCTTTAAACTGTGCGCTCAA 58.433 42.857 13.78 0.00 0.00 3.02
403 404 2.248280 TCCTTTAAACTGTGCGCTCA 57.752 45.000 9.73 11.10 0.00 4.26
404 405 4.939509 TTATCCTTTAAACTGTGCGCTC 57.060 40.909 9.73 5.51 0.00 5.03
405 406 5.458015 GTTTTATCCTTTAAACTGTGCGCT 58.542 37.500 9.73 0.00 32.79 5.92
406 407 4.319901 CGTTTTATCCTTTAAACTGTGCGC 59.680 41.667 0.00 0.00 33.24 6.09
407 408 5.445845 ACGTTTTATCCTTTAAACTGTGCG 58.554 37.500 0.00 0.00 33.24 5.34
408 409 7.688478 AAACGTTTTATCCTTTAAACTGTGC 57.312 32.000 7.96 0.00 33.24 4.57
409 410 9.291664 TCAAAACGTTTTATCCTTTAAACTGTG 57.708 29.630 24.79 8.65 33.24 3.66
410 411 9.857957 TTCAAAACGTTTTATCCTTTAAACTGT 57.142 25.926 24.79 0.00 33.24 3.55
424 425 9.337091 CGTAGATCCATTTATTCAAAACGTTTT 57.663 29.630 20.26 20.26 0.00 2.43
425 426 8.723311 TCGTAGATCCATTTATTCAAAACGTTT 58.277 29.630 7.96 7.96 0.00 3.60
426 427 8.259049 TCGTAGATCCATTTATTCAAAACGTT 57.741 30.769 0.00 0.00 0.00 3.99
427 428 7.837202 TCGTAGATCCATTTATTCAAAACGT 57.163 32.000 0.00 0.00 0.00 3.99
428 429 9.549509 TTTTCGTAGATCCATTTATTCAAAACG 57.450 29.630 0.00 0.00 35.04 3.60
460 461 8.325046 AGTCTTCCTAAGCATCTGATAGTTTTT 58.675 33.333 0.00 0.00 0.00 1.94
461 462 7.768120 CAGTCTTCCTAAGCATCTGATAGTTTT 59.232 37.037 0.00 0.00 0.00 2.43
462 463 7.271511 CAGTCTTCCTAAGCATCTGATAGTTT 58.728 38.462 0.00 0.00 0.00 2.66
463 464 6.183360 CCAGTCTTCCTAAGCATCTGATAGTT 60.183 42.308 0.00 0.00 0.00 2.24
464 465 5.304101 CCAGTCTTCCTAAGCATCTGATAGT 59.696 44.000 0.00 0.00 0.00 2.12
465 466 5.279406 CCCAGTCTTCCTAAGCATCTGATAG 60.279 48.000 0.00 0.00 0.00 2.08
466 467 4.590647 CCCAGTCTTCCTAAGCATCTGATA 59.409 45.833 0.00 0.00 0.00 2.15
467 468 3.390639 CCCAGTCTTCCTAAGCATCTGAT 59.609 47.826 0.00 0.00 0.00 2.90
468 469 2.768527 CCCAGTCTTCCTAAGCATCTGA 59.231 50.000 0.00 0.00 0.00 3.27
469 470 2.744494 GCCCAGTCTTCCTAAGCATCTG 60.744 54.545 0.00 0.00 0.00 2.90
470 471 1.488393 GCCCAGTCTTCCTAAGCATCT 59.512 52.381 0.00 0.00 0.00 2.90
471 472 1.808133 CGCCCAGTCTTCCTAAGCATC 60.808 57.143 0.00 0.00 0.00 3.91
472 473 0.179000 CGCCCAGTCTTCCTAAGCAT 59.821 55.000 0.00 0.00 0.00 3.79
473 474 0.902984 TCGCCCAGTCTTCCTAAGCA 60.903 55.000 0.00 0.00 0.00 3.91
474 475 0.466124 ATCGCCCAGTCTTCCTAAGC 59.534 55.000 0.00 0.00 0.00 3.09
475 476 1.202580 CCATCGCCCAGTCTTCCTAAG 60.203 57.143 0.00 0.00 0.00 2.18
476 477 0.830648 CCATCGCCCAGTCTTCCTAA 59.169 55.000 0.00 0.00 0.00 2.69
477 478 1.686325 GCCATCGCCCAGTCTTCCTA 61.686 60.000 0.00 0.00 0.00 2.94
478 479 3.036429 GCCATCGCCCAGTCTTCCT 62.036 63.158 0.00 0.00 0.00 3.36
479 480 2.514824 GCCATCGCCCAGTCTTCC 60.515 66.667 0.00 0.00 0.00 3.46
480 481 1.817099 CTGCCATCGCCCAGTCTTC 60.817 63.158 0.00 0.00 0.00 2.87
481 482 2.270205 CTGCCATCGCCCAGTCTT 59.730 61.111 0.00 0.00 0.00 3.01
482 483 4.479993 GCTGCCATCGCCCAGTCT 62.480 66.667 0.00 0.00 0.00 3.24
483 484 4.479993 AGCTGCCATCGCCCAGTC 62.480 66.667 0.00 0.00 0.00 3.51
484 485 4.479993 GAGCTGCCATCGCCCAGT 62.480 66.667 0.00 0.00 0.00 4.00
488 489 2.608970 TTTAGGGAGCTGCCATCGCC 62.609 60.000 27.56 1.28 38.95 5.54
489 490 0.536006 ATTTAGGGAGCTGCCATCGC 60.536 55.000 27.56 2.63 38.95 4.58
490 491 2.839486 TATTTAGGGAGCTGCCATCG 57.161 50.000 27.56 0.00 38.95 3.84
491 492 3.009473 TCCATATTTAGGGAGCTGCCATC 59.991 47.826 27.56 0.00 38.95 3.51
492 493 2.988859 TCCATATTTAGGGAGCTGCCAT 59.011 45.455 27.56 13.76 38.95 4.40
493 494 2.417652 TCCATATTTAGGGAGCTGCCA 58.582 47.619 27.56 9.71 38.95 4.92
494 495 3.508845 TTCCATATTTAGGGAGCTGCC 57.491 47.619 18.04 18.04 37.47 4.85
495 496 6.660949 ACATTATTCCATATTTAGGGAGCTGC 59.339 38.462 0.00 0.00 37.47 5.25
496 497 8.517878 CAACATTATTCCATATTTAGGGAGCTG 58.482 37.037 0.00 0.00 37.47 4.24
497 498 7.177392 GCAACATTATTCCATATTTAGGGAGCT 59.823 37.037 0.00 0.00 37.47 4.09
498 499 7.177392 AGCAACATTATTCCATATTTAGGGAGC 59.823 37.037 0.00 0.00 37.47 4.70
499 500 8.517878 CAGCAACATTATTCCATATTTAGGGAG 58.482 37.037 0.00 0.00 37.47 4.30
500 501 7.039784 GCAGCAACATTATTCCATATTTAGGGA 60.040 37.037 0.00 0.00 33.80 4.20
501 502 7.039504 AGCAGCAACATTATTCCATATTTAGGG 60.040 37.037 0.00 0.00 0.00 3.53
502 503 7.889469 AGCAGCAACATTATTCCATATTTAGG 58.111 34.615 0.00 0.00 0.00 2.69
505 506 9.533253 GTTTAGCAGCAACATTATTCCATATTT 57.467 29.630 0.00 0.00 0.00 1.40
506 507 7.862372 CGTTTAGCAGCAACATTATTCCATATT 59.138 33.333 0.00 0.00 0.00 1.28
507 508 7.228507 TCGTTTAGCAGCAACATTATTCCATAT 59.771 33.333 0.00 0.00 0.00 1.78
508 509 6.540551 TCGTTTAGCAGCAACATTATTCCATA 59.459 34.615 0.00 0.00 0.00 2.74
509 510 5.356751 TCGTTTAGCAGCAACATTATTCCAT 59.643 36.000 0.00 0.00 0.00 3.41
510 511 4.697828 TCGTTTAGCAGCAACATTATTCCA 59.302 37.500 0.00 0.00 0.00 3.53
511 512 5.229921 TCGTTTAGCAGCAACATTATTCC 57.770 39.130 0.00 0.00 0.00 3.01
512 513 6.575201 GCTATCGTTTAGCAGCAACATTATTC 59.425 38.462 13.00 0.00 40.14 1.75
513 514 6.038161 TGCTATCGTTTAGCAGCAACATTATT 59.962 34.615 15.57 0.00 44.65 1.40
514 515 5.527214 TGCTATCGTTTAGCAGCAACATTAT 59.473 36.000 15.57 0.00 44.65 1.28
515 516 4.873259 TGCTATCGTTTAGCAGCAACATTA 59.127 37.500 15.57 0.00 44.65 1.90
516 517 3.689161 TGCTATCGTTTAGCAGCAACATT 59.311 39.130 15.57 0.00 44.65 2.71
517 518 3.270027 TGCTATCGTTTAGCAGCAACAT 58.730 40.909 15.57 0.00 44.65 2.71
518 519 2.694213 TGCTATCGTTTAGCAGCAACA 58.306 42.857 15.57 0.00 44.65 3.33
524 525 2.694213 TGTTGCTGCTATCGTTTAGCA 58.306 42.857 17.58 17.58 47.00 3.49
525 526 3.611517 CATGTTGCTGCTATCGTTTAGC 58.388 45.455 11.56 11.56 40.76 3.09
526 527 3.063861 TGCATGTTGCTGCTATCGTTTAG 59.936 43.478 0.00 0.00 45.31 1.85
527 528 3.006247 TGCATGTTGCTGCTATCGTTTA 58.994 40.909 0.00 0.00 45.31 2.01
528 529 1.811965 TGCATGTTGCTGCTATCGTTT 59.188 42.857 0.00 0.00 45.31 3.60
529 530 1.399440 CTGCATGTTGCTGCTATCGTT 59.601 47.619 0.00 0.00 45.31 3.85
530 531 1.012086 CTGCATGTTGCTGCTATCGT 58.988 50.000 0.00 0.00 45.31 3.73
531 532 3.819919 CTGCATGTTGCTGCTATCG 57.180 52.632 0.00 0.00 45.31 2.92
537 538 2.803670 GCACGCTGCATGTTGCTG 60.804 61.111 0.00 1.64 45.31 4.41
549 550 3.254014 ATTGCGACAAGTGGCACGC 62.254 57.895 12.71 12.25 43.81 5.34
550 551 1.154413 GATTGCGACAAGTGGCACG 60.154 57.895 12.71 0.36 43.81 5.34
551 552 1.394917 CTAGATTGCGACAAGTGGCAC 59.605 52.381 10.29 10.29 43.81 5.01
552 553 1.675714 CCTAGATTGCGACAAGTGGCA 60.676 52.381 5.77 5.77 42.47 4.92
553 554 1.009829 CCTAGATTGCGACAAGTGGC 58.990 55.000 0.00 0.00 34.76 5.01
554 555 1.207089 TCCCTAGATTGCGACAAGTGG 59.793 52.381 0.00 0.00 0.00 4.00
555 556 2.672961 TCCCTAGATTGCGACAAGTG 57.327 50.000 0.00 0.00 0.00 3.16
556 557 2.093447 CCTTCCCTAGATTGCGACAAGT 60.093 50.000 0.00 0.00 0.00 3.16
557 558 2.093447 ACCTTCCCTAGATTGCGACAAG 60.093 50.000 0.00 0.00 0.00 3.16
558 559 1.906574 ACCTTCCCTAGATTGCGACAA 59.093 47.619 0.00 0.00 0.00 3.18
559 560 1.207089 CACCTTCCCTAGATTGCGACA 59.793 52.381 0.00 0.00 0.00 4.35
560 561 1.207329 ACACCTTCCCTAGATTGCGAC 59.793 52.381 0.00 0.00 0.00 5.19
561 562 1.207089 CACACCTTCCCTAGATTGCGA 59.793 52.381 0.00 0.00 0.00 5.10
562 563 1.207089 TCACACCTTCCCTAGATTGCG 59.793 52.381 0.00 0.00 0.00 4.85
563 564 2.237392 ACTCACACCTTCCCTAGATTGC 59.763 50.000 0.00 0.00 0.00 3.56
564 565 3.515502 TCACTCACACCTTCCCTAGATTG 59.484 47.826 0.00 0.00 0.00 2.67
565 566 3.791320 TCACTCACACCTTCCCTAGATT 58.209 45.455 0.00 0.00 0.00 2.40
566 567 3.474798 TCACTCACACCTTCCCTAGAT 57.525 47.619 0.00 0.00 0.00 1.98
567 568 2.992847 TCACTCACACCTTCCCTAGA 57.007 50.000 0.00 0.00 0.00 2.43
568 569 3.370104 AGATCACTCACACCTTCCCTAG 58.630 50.000 0.00 0.00 0.00 3.02
569 570 3.474798 AGATCACTCACACCTTCCCTA 57.525 47.619 0.00 0.00 0.00 3.53
570 571 2.334006 AGATCACTCACACCTTCCCT 57.666 50.000 0.00 0.00 0.00 4.20
571 572 3.077359 CAAAGATCACTCACACCTTCCC 58.923 50.000 0.00 0.00 0.00 3.97
572 573 2.485814 GCAAAGATCACTCACACCTTCC 59.514 50.000 0.00 0.00 0.00 3.46
573 574 3.141398 TGCAAAGATCACTCACACCTTC 58.859 45.455 0.00 0.00 0.00 3.46
574 575 3.213206 TGCAAAGATCACTCACACCTT 57.787 42.857 0.00 0.00 0.00 3.50
575 576 2.936919 TGCAAAGATCACTCACACCT 57.063 45.000 0.00 0.00 0.00 4.00
576 577 3.503363 TCATTGCAAAGATCACTCACACC 59.497 43.478 1.71 0.00 0.00 4.16
577 578 4.214971 ACTCATTGCAAAGATCACTCACAC 59.785 41.667 1.71 0.00 0.00 3.82
578 579 4.392047 ACTCATTGCAAAGATCACTCACA 58.608 39.130 1.71 0.00 0.00 3.58
579 580 5.641209 AGTACTCATTGCAAAGATCACTCAC 59.359 40.000 1.71 0.00 0.00 3.51
580 581 5.798132 AGTACTCATTGCAAAGATCACTCA 58.202 37.500 1.71 0.00 0.00 3.41
581 582 5.293079 GGAGTACTCATTGCAAAGATCACTC 59.707 44.000 23.91 23.94 0.00 3.51
582 583 5.046014 AGGAGTACTCATTGCAAAGATCACT 60.046 40.000 23.91 14.55 0.00 3.41
583 584 5.181748 AGGAGTACTCATTGCAAAGATCAC 58.818 41.667 23.91 5.50 0.00 3.06
584 585 5.423015 GAGGAGTACTCATTGCAAAGATCA 58.577 41.667 23.91 0.00 45.85 2.92
585 586 5.982465 GAGGAGTACTCATTGCAAAGATC 57.018 43.478 23.91 0.00 45.85 2.75
597 598 5.292101 CGAAATCACCAATTGAGGAGTACTC 59.708 44.000 14.87 14.87 46.78 2.59
598 599 5.178797 CGAAATCACCAATTGAGGAGTACT 58.821 41.667 7.12 0.00 37.77 2.73
599 600 4.201822 GCGAAATCACCAATTGAGGAGTAC 60.202 45.833 7.12 0.00 37.77 2.73
600 601 3.938963 GCGAAATCACCAATTGAGGAGTA 59.061 43.478 7.12 0.00 37.77 2.59
601 602 2.749621 GCGAAATCACCAATTGAGGAGT 59.250 45.455 7.12 0.03 37.77 3.85
602 603 2.749076 TGCGAAATCACCAATTGAGGAG 59.251 45.455 7.12 0.00 37.77 3.69
603 604 2.749076 CTGCGAAATCACCAATTGAGGA 59.251 45.455 7.12 4.19 37.77 3.71
604 605 2.489329 ACTGCGAAATCACCAATTGAGG 59.511 45.455 7.12 0.00 37.77 3.86
605 606 3.438087 AGACTGCGAAATCACCAATTGAG 59.562 43.478 7.12 0.00 37.77 3.02
606 607 3.411446 AGACTGCGAAATCACCAATTGA 58.589 40.909 7.12 0.00 39.11 2.57
607 608 3.837213 AGACTGCGAAATCACCAATTG 57.163 42.857 0.00 0.00 0.00 2.32
608 609 4.853924 AAAGACTGCGAAATCACCAATT 57.146 36.364 0.00 0.00 0.00 2.32
609 610 4.853924 AAAAGACTGCGAAATCACCAAT 57.146 36.364 0.00 0.00 0.00 3.16
610 611 4.023536 GGTAAAAGACTGCGAAATCACCAA 60.024 41.667 0.00 0.00 0.00 3.67
611 612 3.500680 GGTAAAAGACTGCGAAATCACCA 59.499 43.478 0.00 0.00 0.00 4.17
612 613 3.119955 GGGTAAAAGACTGCGAAATCACC 60.120 47.826 0.00 0.00 0.00 4.02
613 614 3.500680 TGGGTAAAAGACTGCGAAATCAC 59.499 43.478 0.00 0.00 0.00 3.06
614 615 3.745799 TGGGTAAAAGACTGCGAAATCA 58.254 40.909 0.00 0.00 0.00 2.57
615 616 4.759516 TTGGGTAAAAGACTGCGAAATC 57.240 40.909 0.00 0.00 0.00 2.17
616 617 5.523438 TTTTGGGTAAAAGACTGCGAAAT 57.477 34.783 0.00 0.00 32.31 2.17
617 618 4.985538 TTTTGGGTAAAAGACTGCGAAA 57.014 36.364 0.00 0.00 32.31 3.46
618 619 4.985538 TTTTTGGGTAAAAGACTGCGAA 57.014 36.364 0.00 0.00 37.12 4.70
657 658 6.159299 TGGCAAAATGTGATTCTTGAAAGA 57.841 33.333 0.00 0.00 0.00 2.52
658 659 6.847956 TTGGCAAAATGTGATTCTTGAAAG 57.152 33.333 0.00 0.00 0.00 2.62
659 660 7.804843 AATTGGCAAAATGTGATTCTTGAAA 57.195 28.000 3.01 0.00 0.00 2.69
660 661 8.899427 TTAATTGGCAAAATGTGATTCTTGAA 57.101 26.923 3.01 0.00 0.00 2.69
661 662 7.118101 GCTTAATTGGCAAAATGTGATTCTTGA 59.882 33.333 3.01 0.00 0.00 3.02
662 663 7.238571 GCTTAATTGGCAAAATGTGATTCTTG 58.761 34.615 3.01 0.00 0.00 3.02
663 664 6.091169 CGCTTAATTGGCAAAATGTGATTCTT 59.909 34.615 3.01 0.00 0.00 2.52
664 665 5.577945 CGCTTAATTGGCAAAATGTGATTCT 59.422 36.000 3.01 0.00 0.00 2.40
665 666 5.576384 TCGCTTAATTGGCAAAATGTGATTC 59.424 36.000 3.01 0.00 0.00 2.52
666 667 5.477510 TCGCTTAATTGGCAAAATGTGATT 58.522 33.333 3.01 0.00 0.00 2.57
667 668 5.070770 TCGCTTAATTGGCAAAATGTGAT 57.929 34.783 3.01 0.00 0.00 3.06
668 669 4.217334 TCTCGCTTAATTGGCAAAATGTGA 59.783 37.500 3.01 9.06 0.00 3.58
669 670 4.324402 GTCTCGCTTAATTGGCAAAATGTG 59.676 41.667 3.01 5.16 0.00 3.21
670 671 4.022416 TGTCTCGCTTAATTGGCAAAATGT 60.022 37.500 3.01 0.00 0.00 2.71
671 672 4.324402 GTGTCTCGCTTAATTGGCAAAATG 59.676 41.667 3.01 0.00 0.00 2.32
672 673 4.022416 TGTGTCTCGCTTAATTGGCAAAAT 60.022 37.500 3.01 0.00 0.00 1.82
673 674 3.316588 TGTGTCTCGCTTAATTGGCAAAA 59.683 39.130 3.01 0.00 0.00 2.44
674 675 2.881513 TGTGTCTCGCTTAATTGGCAAA 59.118 40.909 3.01 0.00 0.00 3.68
675 676 2.483877 CTGTGTCTCGCTTAATTGGCAA 59.516 45.455 0.68 0.68 0.00 4.52
676 677 2.076100 CTGTGTCTCGCTTAATTGGCA 58.924 47.619 6.16 0.00 0.00 4.92
677 678 2.076863 ACTGTGTCTCGCTTAATTGGC 58.923 47.619 0.00 0.00 0.00 4.52
678 679 2.345641 CGACTGTGTCTCGCTTAATTGG 59.654 50.000 0.00 0.00 0.00 3.16
679 680 3.624726 CGACTGTGTCTCGCTTAATTG 57.375 47.619 0.00 0.00 0.00 2.32
687 688 2.179517 GGGAGCGACTGTGTCTCG 59.820 66.667 0.00 0.00 0.00 4.04
688 689 1.080434 GTGGGAGCGACTGTGTCTC 60.080 63.158 0.00 0.00 0.00 3.36
689 690 1.188219 ATGTGGGAGCGACTGTGTCT 61.188 55.000 0.00 0.00 0.00 3.41
690 691 0.320771 AATGTGGGAGCGACTGTGTC 60.321 55.000 0.00 0.00 0.00 3.67
691 692 0.973632 TAATGTGGGAGCGACTGTGT 59.026 50.000 0.00 0.00 0.00 3.72
692 693 2.315925 ATAATGTGGGAGCGACTGTG 57.684 50.000 0.00 0.00 0.00 3.66
693 694 2.224066 GCTATAATGTGGGAGCGACTGT 60.224 50.000 0.00 0.00 0.00 3.55
694 695 2.408050 GCTATAATGTGGGAGCGACTG 58.592 52.381 0.00 0.00 0.00 3.51
695 696 2.821991 GCTATAATGTGGGAGCGACT 57.178 50.000 0.00 0.00 0.00 4.18
699 700 1.593196 TTGCGCTATAATGTGGGAGC 58.407 50.000 9.73 0.00 0.00 4.70
700 701 4.836125 AATTTGCGCTATAATGTGGGAG 57.164 40.909 9.73 0.00 0.00 4.30
701 702 4.642437 TGAAATTTGCGCTATAATGTGGGA 59.358 37.500 9.73 0.00 0.00 4.37
702 703 4.930963 TGAAATTTGCGCTATAATGTGGG 58.069 39.130 9.73 0.00 0.00 4.61
703 704 4.442073 GCTGAAATTTGCGCTATAATGTGG 59.558 41.667 9.73 0.00 0.00 4.17
704 705 4.442073 GGCTGAAATTTGCGCTATAATGTG 59.558 41.667 9.73 0.00 0.00 3.21
705 706 4.499696 GGGCTGAAATTTGCGCTATAATGT 60.500 41.667 9.73 0.57 38.77 2.71
706 707 3.983344 GGGCTGAAATTTGCGCTATAATG 59.017 43.478 9.73 0.00 38.77 1.90
707 708 3.636300 TGGGCTGAAATTTGCGCTATAAT 59.364 39.130 9.73 2.89 41.71 1.28
708 709 3.020274 TGGGCTGAAATTTGCGCTATAA 58.980 40.909 9.73 0.14 41.71 0.98
709 710 2.649190 TGGGCTGAAATTTGCGCTATA 58.351 42.857 9.73 0.00 41.71 1.31
710 711 1.473258 TGGGCTGAAATTTGCGCTAT 58.527 45.000 9.73 0.00 41.71 2.97
711 712 1.252175 TTGGGCTGAAATTTGCGCTA 58.748 45.000 9.73 0.00 41.71 4.26
712 713 0.609662 ATTGGGCTGAAATTTGCGCT 59.390 45.000 9.73 0.00 41.71 5.92
713 714 2.292103 TATTGGGCTGAAATTTGCGC 57.708 45.000 0.00 0.00 41.57 6.09
714 715 3.993081 TGTTTATTGGGCTGAAATTTGCG 59.007 39.130 0.00 0.00 0.00 4.85
715 716 4.392754 CCTGTTTATTGGGCTGAAATTTGC 59.607 41.667 0.00 0.00 0.00 3.68
716 717 4.392754 GCCTGTTTATTGGGCTGAAATTTG 59.607 41.667 0.00 0.00 42.31 2.32
717 718 4.565444 GGCCTGTTTATTGGGCTGAAATTT 60.565 41.667 0.00 0.00 44.70 1.82
718 719 3.055167 GGCCTGTTTATTGGGCTGAAATT 60.055 43.478 0.00 0.00 44.70 1.82
719 720 2.501316 GGCCTGTTTATTGGGCTGAAAT 59.499 45.455 0.00 0.00 44.70 2.17
720 721 1.899142 GGCCTGTTTATTGGGCTGAAA 59.101 47.619 0.00 0.00 44.70 2.69
721 722 1.555967 GGCCTGTTTATTGGGCTGAA 58.444 50.000 0.00 0.00 44.70 3.02
722 723 3.281332 GGCCTGTTTATTGGGCTGA 57.719 52.632 0.00 0.00 44.70 4.26
723 724 1.809207 CGGCCTGTTTATTGGGCTG 59.191 57.895 0.00 0.00 45.35 4.85
724 725 0.039035 TTCGGCCTGTTTATTGGGCT 59.961 50.000 0.00 0.00 45.35 5.19
725 726 1.111277 ATTCGGCCTGTTTATTGGGC 58.889 50.000 0.00 0.00 44.59 5.36
726 727 3.194542 TGAAATTCGGCCTGTTTATTGGG 59.805 43.478 0.00 0.00 0.00 4.12
727 728 4.423732 CTGAAATTCGGCCTGTTTATTGG 58.576 43.478 0.00 0.00 0.00 3.16
728 729 3.859386 GCTGAAATTCGGCCTGTTTATTG 59.141 43.478 15.52 0.00 42.80 1.90
729 730 4.110036 GCTGAAATTCGGCCTGTTTATT 57.890 40.909 15.52 0.00 42.80 1.40
730 731 3.782889 GCTGAAATTCGGCCTGTTTAT 57.217 42.857 15.52 0.00 42.80 1.40
739 740 2.395360 TTCCGCGGCTGAAATTCGG 61.395 57.895 23.51 0.00 41.30 4.30
740 741 1.226018 GTTCCGCGGCTGAAATTCG 60.226 57.895 23.51 0.00 0.00 3.34
741 742 1.226018 CGTTCCGCGGCTGAAATTC 60.226 57.895 23.51 3.10 36.85 2.17
742 743 1.231958 TTCGTTCCGCGGCTGAAATT 61.232 50.000 23.51 0.00 41.72 1.82
743 744 1.635663 CTTCGTTCCGCGGCTGAAAT 61.636 55.000 23.51 0.00 41.72 2.17
744 745 2.280254 TTCGTTCCGCGGCTGAAA 60.280 55.556 23.51 6.58 41.72 2.69
745 746 2.702751 TTCTTCGTTCCGCGGCTGAA 62.703 55.000 23.51 21.43 41.72 3.02
746 747 3.215597 TTCTTCGTTCCGCGGCTGA 62.216 57.895 23.51 15.20 41.72 4.26
747 748 2.730672 CTTCTTCGTTCCGCGGCTG 61.731 63.158 23.51 12.80 41.72 4.85
748 749 2.432628 CTTCTTCGTTCCGCGGCT 60.433 61.111 23.51 0.00 41.72 5.52
749 750 1.010419 TAACTTCTTCGTTCCGCGGC 61.010 55.000 23.51 6.46 41.72 6.53
750 751 0.712222 GTAACTTCTTCGTTCCGCGG 59.288 55.000 22.12 22.12 41.72 6.46
751 752 1.647702 GAGTAACTTCTTCGTTCCGCG 59.352 52.381 0.00 0.00 43.01 6.46
752 753 2.662156 CTGAGTAACTTCTTCGTTCCGC 59.338 50.000 0.00 0.00 0.00 5.54
753 754 3.243336 CCTGAGTAACTTCTTCGTTCCG 58.757 50.000 0.00 0.00 0.00 4.30
754 755 2.994578 GCCTGAGTAACTTCTTCGTTCC 59.005 50.000 0.00 0.00 0.00 3.62
755 756 2.994578 GGCCTGAGTAACTTCTTCGTTC 59.005 50.000 0.00 0.00 0.00 3.95
756 757 2.609737 CGGCCTGAGTAACTTCTTCGTT 60.610 50.000 0.00 0.00 0.00 3.85
757 758 1.067776 CGGCCTGAGTAACTTCTTCGT 60.068 52.381 0.00 0.00 0.00 3.85
758 759 1.067776 ACGGCCTGAGTAACTTCTTCG 60.068 52.381 0.00 0.00 0.00 3.79
759 760 2.338500 CACGGCCTGAGTAACTTCTTC 58.662 52.381 0.00 0.00 0.00 2.87
760 761 1.002087 CCACGGCCTGAGTAACTTCTT 59.998 52.381 0.00 0.00 0.00 2.52
761 762 0.608640 CCACGGCCTGAGTAACTTCT 59.391 55.000 0.00 0.00 0.00 2.85
769 770 1.966451 GACAAACCCACGGCCTGAG 60.966 63.158 0.00 0.00 0.00 3.35
770 771 2.112297 GACAAACCCACGGCCTGA 59.888 61.111 0.00 0.00 0.00 3.86
806 812 1.181098 AACCTGCCGCAGCTGAAATT 61.181 50.000 20.43 0.00 40.18 1.82
815 821 2.664851 CAGTCGAAACCTGCCGCA 60.665 61.111 0.00 0.00 0.00 5.69
825 831 1.671742 GTCTTGGGCCTCAGTCGAA 59.328 57.895 4.53 0.00 0.00 3.71
826 832 2.636412 CGTCTTGGGCCTCAGTCGA 61.636 63.158 14.42 0.00 0.00 4.20
846 852 6.851330 CGTGTTTGTAAAATCCTCAAACTCTC 59.149 38.462 16.82 9.30 45.99 3.20
914 924 3.103742 TGTCAATCCTAATTTTGGCCCC 58.896 45.455 0.00 0.00 0.00 5.80
1308 1325 2.725312 GCTCATGGAGAGGACGGCA 61.725 63.158 0.00 0.00 44.86 5.69
1896 1913 1.748879 GCAGAGGGCAATTACGGCA 60.749 57.895 0.00 0.00 43.97 5.69
1907 1924 0.681564 ACCGACACTAGAGCAGAGGG 60.682 60.000 0.00 0.00 0.00 4.30
1965 1982 5.960202 AGAATCTGCAAAGACCCCATTTAAT 59.040 36.000 0.00 0.00 0.00 1.40
1991 2008 7.402054 CCCCTCAAGTATGGCATTATATGTAA 58.598 38.462 4.78 0.00 0.00 2.41
2002 2019 0.475906 ATGAGCCCCTCAAGTATGGC 59.524 55.000 0.00 0.00 44.04 4.40
2058 2075 0.737367 CGTTCTTGCTCATCTCCGCA 60.737 55.000 0.00 0.00 0.00 5.69
2091 2108 2.595463 GCAGCACAGTTGGAGGCA 60.595 61.111 0.00 0.00 0.00 4.75
2221 2238 1.066787 GCTAAAGTCGAGAAGCCCAGT 60.067 52.381 0.00 0.00 0.00 4.00
2248 2265 4.209538 TCGGTATATTTCTTCACCTCGGA 58.790 43.478 0.00 0.00 0.00 4.55
2481 2498 4.525912 AGGTCATGAAAATTGGCAGTTC 57.474 40.909 0.00 0.00 0.00 3.01
2646 2663 6.262193 TCCTTTCGAACAAAACTTCAAGTT 57.738 33.333 0.00 0.00 40.80 2.66
2647 2664 5.163652 CCTCCTTTCGAACAAAACTTCAAGT 60.164 40.000 0.00 0.00 0.00 3.16
2718 2736 1.480954 CTAACCACGGGACATAGCAGT 59.519 52.381 0.00 0.00 0.00 4.40
2742 2760 1.613317 TAGCCACACCATCTCCACCG 61.613 60.000 0.00 0.00 0.00 4.94
2784 2802 2.795231 TCAGCCATCCTCCTCAAAAG 57.205 50.000 0.00 0.00 0.00 2.27
2862 2883 6.471233 TTCTTAGGGTGTCTCACATCTATG 57.529 41.667 2.41 5.93 35.86 2.23
3286 3308 1.239347 GGTCTTGCTTCCTTTTCGCT 58.761 50.000 0.00 0.00 0.00 4.93
3352 3771 8.389366 GTCTAGTAGTATACCTTCCCTATTGGA 58.611 40.741 0.00 0.00 44.47 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.