Multiple sequence alignment - TraesCS2B01G396800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G396800 chr2B 100.000 4201 0 0 1 4201 563185957 563181757 0.000000e+00 7758.0
1 TraesCS2B01G396800 chr2B 88.509 1140 91 22 656 1760 563046796 563045662 0.000000e+00 1343.0
2 TraesCS2B01G396800 chr2B 81.169 616 78 26 2660 3253 563044397 563043798 1.060000e-125 460.0
3 TraesCS2B01G396800 chr2B 94.578 166 9 0 2340 2505 563045293 563045128 1.500000e-64 257.0
4 TraesCS2B01G396800 chr2B 93.827 81 3 2 1998 2078 799002041 799001963 2.050000e-23 121.0
5 TraesCS2B01G396800 chr2B 93.590 78 3 2 2001 2078 798993791 798993716 9.540000e-22 115.0
6 TraesCS2B01G396800 chr2B 86.207 87 3 6 2562 2640 563044614 563044529 7.480000e-13 86.1
7 TraesCS2B01G396800 chr2A 89.197 2092 168 32 2068 4140 622853003 622850951 0.000000e+00 2558.0
8 TraesCS2B01G396800 chr2A 93.727 1100 54 9 622 1717 622854113 622853025 0.000000e+00 1635.0
9 TraesCS2B01G396800 chr2A 90.246 1015 79 11 623 1625 622748436 622747430 0.000000e+00 1308.0
10 TraesCS2B01G396800 chr2A 86.054 588 82 0 1030 1617 170602948 170603535 2.130000e-177 632.0
11 TraesCS2B01G396800 chr2A 85.413 569 57 15 27 583 622855383 622854829 6.100000e-158 568.0
12 TraesCS2B01G396800 chr2A 81.626 615 75 29 2660 3253 622746500 622745903 3.800000e-130 475.0
13 TraesCS2B01G396800 chr2A 83.692 325 29 16 2333 2640 622746954 622746637 6.870000e-73 285.0
14 TraesCS2B01G396800 chr2A 92.593 81 5 1 1999 2079 703344051 703344130 9.540000e-22 115.0
15 TraesCS2B01G396800 chr2D 90.308 1816 100 32 2068 3852 480324762 480322992 0.000000e+00 2309.0
16 TraesCS2B01G396800 chr2D 91.437 1635 78 23 173 1769 480326367 480324757 0.000000e+00 2187.0
17 TraesCS2B01G396800 chr2D 88.441 1142 92 21 656 1760 480182022 480180884 0.000000e+00 1341.0
18 TraesCS2B01G396800 chr2D 86.224 588 81 0 1030 1617 159573843 159574430 4.580000e-179 638.0
19 TraesCS2B01G396800 chr2D 82.215 596 76 18 2684 3253 480180082 480179491 1.760000e-133 486.0
20 TraesCS2B01G396800 chr2D 90.584 308 23 5 3885 4187 480322990 480322684 1.820000e-108 403.0
21 TraesCS2B01G396800 chr2D 97.661 171 3 1 1 171 480328037 480327868 4.110000e-75 292.0
22 TraesCS2B01G396800 chr2D 84.277 318 26 16 2340 2638 480180560 480180248 5.310000e-74 289.0
23 TraesCS2B01G396800 chr5D 86.092 568 74 4 1051 1617 128565428 128564865 1.290000e-169 606.0
24 TraesCS2B01G396800 chr5D 85.000 140 21 0 2353 2492 562029601 562029740 4.380000e-30 143.0
25 TraesCS2B01G396800 chr5A 86.092 568 74 5 1051 1617 143552900 143552337 1.290000e-169 606.0
26 TraesCS2B01G396800 chr5A 92.308 104 6 2 1789 1891 599549310 599549412 3.380000e-31 147.0
27 TraesCS2B01G396800 chr4A 96.667 210 6 1 1789 1997 731643827 731643618 8.640000e-92 348.0
28 TraesCS2B01G396800 chr6D 93.878 98 5 1 3076 3173 302040144 302040240 3.380000e-31 147.0
29 TraesCS2B01G396800 chr6D 94.737 76 4 0 1996 2071 115038891 115038816 7.380000e-23 119.0
30 TraesCS2B01G396800 chr6B 93.684 95 5 1 3076 3170 467450590 467450683 1.570000e-29 141.0
31 TraesCS2B01G396800 chr6A 92.079 101 7 1 3076 3176 414875611 414875512 1.570000e-29 141.0
32 TraesCS2B01G396800 chr7D 88.496 113 8 4 1789 1900 573472886 573472778 9.480000e-27 132.0
33 TraesCS2B01G396800 chr4B 94.048 84 3 2 1995 2077 582291877 582291959 4.410000e-25 126.0
34 TraesCS2B01G396800 chr1D 96.053 76 2 1 1996 2070 408620242 408620167 5.700000e-24 122.0
35 TraesCS2B01G396800 chr1B 95.946 74 3 0 1996 2069 352526687 352526614 2.050000e-23 121.0
36 TraesCS2B01G396800 chr1B 92.857 84 4 2 1996 2079 551466294 551466213 2.050000e-23 121.0
37 TraesCS2B01G396800 chr7B 94.737 76 4 0 1998 2073 450280628 450280553 7.380000e-23 119.0
38 TraesCS2B01G396800 chr7B 80.833 120 23 0 2350 2469 111269804 111269923 1.240000e-15 95.3
39 TraesCS2B01G396800 chr1A 84.298 121 8 9 1789 1903 510834238 510834353 1.600000e-19 108.0
40 TraesCS2B01G396800 chr5B 98.333 60 1 0 1789 1848 696987551 696987492 5.740000e-19 106.0
41 TraesCS2B01G396800 chr3A 100.000 29 0 0 1758 1786 737824585 737824613 2.000000e-03 54.7
42 TraesCS2B01G396800 chr3A 100.000 28 0 0 1759 1786 51753235 51753262 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G396800 chr2B 563181757 563185957 4200 True 7758.000000 7758 100.000000 1 4201 1 chr2B.!!$R1 4200
1 TraesCS2B01G396800 chr2B 563043798 563046796 2998 True 536.525000 1343 87.615750 656 3253 4 chr2B.!!$R4 2597
2 TraesCS2B01G396800 chr2A 622850951 622855383 4432 True 1587.000000 2558 89.445667 27 4140 3 chr2A.!!$R2 4113
3 TraesCS2B01G396800 chr2A 622745903 622748436 2533 True 689.333333 1308 85.188000 623 3253 3 chr2A.!!$R1 2630
4 TraesCS2B01G396800 chr2A 170602948 170603535 587 False 632.000000 632 86.054000 1030 1617 1 chr2A.!!$F1 587
5 TraesCS2B01G396800 chr2D 480322684 480328037 5353 True 1297.750000 2309 92.497500 1 4187 4 chr2D.!!$R2 4186
6 TraesCS2B01G396800 chr2D 480179491 480182022 2531 True 705.333333 1341 84.977667 656 3253 3 chr2D.!!$R1 2597
7 TraesCS2B01G396800 chr2D 159573843 159574430 587 False 638.000000 638 86.224000 1030 1617 1 chr2D.!!$F1 587
8 TraesCS2B01G396800 chr5D 128564865 128565428 563 True 606.000000 606 86.092000 1051 1617 1 chr5D.!!$R1 566
9 TraesCS2B01G396800 chr5A 143552337 143552900 563 True 606.000000 606 86.092000 1051 1617 1 chr5A.!!$R1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
966 3206 0.443869 GCATCTTAGCACACACACCG 59.556 55.0 0.00 0.0 0.0 4.94 F
1778 4065 0.033405 TTGCTAGCTACTCCCTCCGT 60.033 55.0 17.23 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 4119 0.029300 TGTTGACTTGCGCTTTGCTC 59.971 50.0 9.73 0.0 46.63 4.26 R
3743 6877 0.035458 AGAAGGACTTTGACGCCCAG 59.965 55.0 0.00 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.153289 CCTCCCTGTGGCTTGATCG 60.153 63.158 0.00 0.00 0.00 3.69
121 122 1.333619 CACCACAAGTTTCTGTTCCGG 59.666 52.381 0.00 0.00 0.00 5.14
167 168 4.158025 TGTTCTAGACTAGTGGTAGCTTGC 59.842 45.833 0.00 0.00 0.00 4.01
235 1755 7.147949 CGGATAGAAACTTTAAGTAGAGACCCA 60.148 40.741 0.00 0.00 0.00 4.51
236 1756 8.537858 GGATAGAAACTTTAAGTAGAGACCCAA 58.462 37.037 0.00 0.00 0.00 4.12
284 1804 0.814010 GGTTCTTGTGACGTGCCTGT 60.814 55.000 0.00 0.00 0.00 4.00
352 1872 2.827921 GAGAACCCAGACAAATGGCAAT 59.172 45.455 0.00 0.00 39.17 3.56
353 1873 2.564062 AGAACCCAGACAAATGGCAATG 59.436 45.455 0.00 0.00 39.17 2.82
383 1903 2.321060 CGCCAAATGCTCGTAGCG 59.679 61.111 0.00 0.00 46.26 4.26
416 1936 2.862536 CTGATGACCTGTAGCAATGTCG 59.137 50.000 0.00 0.00 0.00 4.35
423 1943 1.806542 CTGTAGCAATGTCGCCAGTTT 59.193 47.619 0.00 0.00 0.00 2.66
432 1952 1.338105 TGTCGCCAGTTTGATCTCCAG 60.338 52.381 0.00 0.00 0.00 3.86
445 1965 3.243816 TCCAGTCCAGCTGCTGCA 61.244 61.111 23.86 6.66 43.71 4.41
446 1966 2.045242 CCAGTCCAGCTGCTGCAT 60.045 61.111 23.86 8.76 43.71 3.96
447 1967 2.407428 CCAGTCCAGCTGCTGCATG 61.407 63.158 23.86 19.02 43.71 4.06
448 1968 2.750637 AGTCCAGCTGCTGCATGC 60.751 61.111 23.86 11.82 42.74 4.06
449 1969 2.750637 GTCCAGCTGCTGCATGCT 60.751 61.111 23.86 17.06 43.37 3.79
453 1973 4.728409 AGCTGCTGCATGCTGTAA 57.272 50.000 23.42 12.75 43.37 2.41
458 1978 2.592194 CTGCTGCATGCTGTAAAAGTG 58.408 47.619 23.42 5.60 43.37 3.16
480 2000 3.512033 AACAGCTTCCTCGTAGCTAAG 57.488 47.619 0.00 0.00 46.80 2.18
491 2012 6.388278 TCCTCGTAGCTAAGAAGTTCTTTTC 58.612 40.000 22.66 14.32 37.89 2.29
517 2038 0.747255 GAGCTCCGGAGTGCAATCTA 59.253 55.000 31.43 0.00 34.89 1.98
535 2056 7.012327 TGCAATCTATAGTTCAGTAATTGTGCC 59.988 37.037 0.00 0.00 0.00 5.01
570 2092 6.823689 CCTACATTTTGATACTTACCAGTGCT 59.176 38.462 0.00 0.00 34.06 4.40
595 2760 2.034124 AGCACACTCAACAGCCAATTT 58.966 42.857 0.00 0.00 0.00 1.82
626 2841 0.689055 ACCCGTCCTGGAAGTAAACC 59.311 55.000 8.80 0.00 42.00 3.27
651 2866 5.336451 GGGCCACTAACTAAAACCAAGAATG 60.336 44.000 4.39 0.00 0.00 2.67
676 2901 2.963782 AGTAAGCTCCACCGTATTAGGG 59.036 50.000 0.83 0.83 35.02 3.53
966 3206 0.443869 GCATCTTAGCACACACACCG 59.556 55.000 0.00 0.00 0.00 4.94
1296 3537 1.203928 GCATGATCTTCGTCCTCGTG 58.796 55.000 0.00 0.00 38.33 4.35
1578 3819 2.915659 ACCGTCTTCTCCGCCACA 60.916 61.111 0.00 0.00 0.00 4.17
1617 3858 4.065281 GACTCCCACGTCCCGGTG 62.065 72.222 0.00 0.00 37.66 4.94
1766 4053 1.410882 CTAGTCCAGTCCCTTGCTAGC 59.589 57.143 8.10 8.10 0.00 3.42
1767 4054 0.252467 AGTCCAGTCCCTTGCTAGCT 60.252 55.000 17.23 0.00 0.00 3.32
1768 4055 1.007238 AGTCCAGTCCCTTGCTAGCTA 59.993 52.381 17.23 7.59 0.00 3.32
1769 4056 1.137282 GTCCAGTCCCTTGCTAGCTAC 59.863 57.143 17.23 6.47 0.00 3.58
1770 4057 1.007238 TCCAGTCCCTTGCTAGCTACT 59.993 52.381 17.23 8.60 0.00 2.57
1771 4058 1.410882 CCAGTCCCTTGCTAGCTACTC 59.589 57.143 17.23 2.01 0.00 2.59
1772 4059 1.410882 CAGTCCCTTGCTAGCTACTCC 59.589 57.143 17.23 0.00 0.00 3.85
1773 4060 0.753867 GTCCCTTGCTAGCTACTCCC 59.246 60.000 17.23 0.00 0.00 4.30
1774 4061 0.637195 TCCCTTGCTAGCTACTCCCT 59.363 55.000 17.23 0.00 0.00 4.20
1775 4062 1.044611 CCCTTGCTAGCTACTCCCTC 58.955 60.000 17.23 0.00 0.00 4.30
1776 4063 1.044611 CCTTGCTAGCTACTCCCTCC 58.955 60.000 17.23 0.00 0.00 4.30
1777 4064 0.671251 CTTGCTAGCTACTCCCTCCG 59.329 60.000 17.23 0.00 0.00 4.63
1778 4065 0.033405 TTGCTAGCTACTCCCTCCGT 60.033 55.000 17.23 0.00 0.00 4.69
1779 4066 0.033405 TGCTAGCTACTCCCTCCGTT 60.033 55.000 17.23 0.00 0.00 4.44
1780 4067 0.669619 GCTAGCTACTCCCTCCGTTC 59.330 60.000 7.70 0.00 0.00 3.95
1781 4068 1.320507 CTAGCTACTCCCTCCGTTCC 58.679 60.000 0.00 0.00 0.00 3.62
1782 4069 0.627451 TAGCTACTCCCTCCGTTCCA 59.373 55.000 0.00 0.00 0.00 3.53
1783 4070 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
1784 4071 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
1785 4072 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
1786 4073 2.551504 GCTACTCCCTCCGTTCCAAAAA 60.552 50.000 0.00 0.00 0.00 1.94
1807 4094 4.801330 AATTTTGATCGAAAGGGGTTCC 57.199 40.909 13.48 0.00 31.99 3.62
1808 4095 2.209690 TTTGATCGAAAGGGGTTCCC 57.790 50.000 0.00 0.00 45.90 3.97
1809 4096 0.330267 TTGATCGAAAGGGGTTCCCC 59.670 55.000 18.61 18.61 46.99 4.81
1829 4116 5.346181 CCCCCGCTCCATTTTATTAAAAA 57.654 39.130 5.73 0.00 38.87 1.94
1830 4117 5.113383 CCCCCGCTCCATTTTATTAAAAAC 58.887 41.667 5.73 0.00 37.41 2.43
1831 4118 4.801516 CCCCGCTCCATTTTATTAAAAACG 59.198 41.667 5.73 5.55 37.41 3.60
1832 4119 4.801516 CCCGCTCCATTTTATTAAAAACGG 59.198 41.667 5.73 12.19 38.90 4.44
1833 4120 5.393243 CCCGCTCCATTTTATTAAAAACGGA 60.393 40.000 20.29 18.52 42.92 4.69
1839 4126 8.527567 TCCATTTTATTAAAAACGGAGCAAAG 57.472 30.769 14.73 0.00 40.91 2.77
1840 4127 7.117092 TCCATTTTATTAAAAACGGAGCAAAGC 59.883 33.333 14.73 0.00 40.91 3.51
1841 4128 6.441099 TTTTATTAAAAACGGAGCAAAGCG 57.559 33.333 0.00 0.00 29.59 4.68
1842 4129 1.761206 TTAAAAACGGAGCAAAGCGC 58.239 45.000 0.00 0.00 42.91 5.92
1843 4130 0.663688 TAAAAACGGAGCAAAGCGCA 59.336 45.000 11.47 0.00 46.13 6.09
1844 4131 0.179124 AAAAACGGAGCAAAGCGCAA 60.179 45.000 11.47 0.00 46.13 4.85
1845 4132 0.594796 AAAACGGAGCAAAGCGCAAG 60.595 50.000 11.47 0.00 46.13 4.01
1846 4133 1.724582 AAACGGAGCAAAGCGCAAGT 61.725 50.000 11.47 0.00 46.13 3.16
1847 4134 2.117941 AACGGAGCAAAGCGCAAGTC 62.118 55.000 11.47 0.00 46.13 3.01
1848 4135 2.606961 CGGAGCAAAGCGCAAGTCA 61.607 57.895 11.47 0.00 46.13 3.41
1849 4136 1.654220 GGAGCAAAGCGCAAGTCAA 59.346 52.632 11.47 0.00 46.13 3.18
1850 4137 0.661483 GGAGCAAAGCGCAAGTCAAC 60.661 55.000 11.47 0.00 46.13 3.18
1851 4138 0.029300 GAGCAAAGCGCAAGTCAACA 59.971 50.000 11.47 0.00 46.13 3.33
1852 4139 0.248621 AGCAAAGCGCAAGTCAACAC 60.249 50.000 11.47 0.00 46.13 3.32
1853 4140 1.531522 GCAAAGCGCAAGTCAACACG 61.532 55.000 11.47 0.00 41.79 4.49
1854 4141 0.929824 CAAAGCGCAAGTCAACACGG 60.930 55.000 11.47 0.00 41.68 4.94
1855 4142 1.092921 AAAGCGCAAGTCAACACGGA 61.093 50.000 11.47 0.00 41.68 4.69
1856 4143 1.772063 AAGCGCAAGTCAACACGGAC 61.772 55.000 11.47 0.00 41.68 4.79
1864 4151 3.530265 AGTCAACACGGACTGTTACAA 57.470 42.857 0.00 0.00 46.02 2.41
1865 4152 3.454375 AGTCAACACGGACTGTTACAAG 58.546 45.455 0.00 0.00 46.02 3.16
1866 4153 2.033151 GTCAACACGGACTGTTACAAGC 60.033 50.000 0.00 0.00 41.50 4.01
1867 4154 1.937223 CAACACGGACTGTTACAAGCA 59.063 47.619 0.00 0.00 41.50 3.91
1868 4155 2.319136 ACACGGACTGTTACAAGCAA 57.681 45.000 0.00 0.00 0.00 3.91
1869 4156 2.846193 ACACGGACTGTTACAAGCAAT 58.154 42.857 0.00 0.00 0.00 3.56
1870 4157 2.806244 ACACGGACTGTTACAAGCAATC 59.194 45.455 0.00 0.00 0.00 2.67
1871 4158 2.805671 CACGGACTGTTACAAGCAATCA 59.194 45.455 0.00 0.00 0.00 2.57
1872 4159 3.067106 ACGGACTGTTACAAGCAATCAG 58.933 45.455 0.00 0.00 0.00 2.90
1873 4160 2.416547 CGGACTGTTACAAGCAATCAGG 59.583 50.000 0.00 0.00 0.00 3.86
1874 4161 2.162408 GGACTGTTACAAGCAATCAGGC 59.838 50.000 0.00 0.00 33.87 4.85
1875 4162 2.162408 GACTGTTACAAGCAATCAGGCC 59.838 50.000 0.00 0.00 0.00 5.19
1876 4163 2.224867 ACTGTTACAAGCAATCAGGCCT 60.225 45.455 0.00 0.00 0.00 5.19
1877 4164 3.009033 ACTGTTACAAGCAATCAGGCCTA 59.991 43.478 3.98 0.00 0.00 3.93
1878 4165 3.343617 TGTTACAAGCAATCAGGCCTAC 58.656 45.455 3.98 0.00 0.00 3.18
1879 4166 2.683362 GTTACAAGCAATCAGGCCTACC 59.317 50.000 3.98 0.00 0.00 3.18
1880 4167 0.034089 ACAAGCAATCAGGCCTACCC 60.034 55.000 3.98 0.00 36.11 3.69
1881 4168 1.097547 CAAGCAATCAGGCCTACCCG 61.098 60.000 3.98 0.00 39.21 5.28
1882 4169 1.271840 AAGCAATCAGGCCTACCCGA 61.272 55.000 3.98 0.00 39.21 5.14
1883 4170 1.056700 AGCAATCAGGCCTACCCGAT 61.057 55.000 3.98 0.00 39.21 4.18
1884 4171 0.685097 GCAATCAGGCCTACCCGATA 59.315 55.000 3.98 0.00 39.21 2.92
1885 4172 1.338200 GCAATCAGGCCTACCCGATAG 60.338 57.143 3.98 0.00 39.21 2.08
1907 4194 1.679139 TGGCAGACCAGAACAAACTG 58.321 50.000 0.00 0.00 42.67 3.16
1908 4195 1.211703 TGGCAGACCAGAACAAACTGA 59.788 47.619 0.00 0.00 42.67 3.41
1909 4196 1.876156 GGCAGACCAGAACAAACTGAG 59.124 52.381 0.00 0.00 39.94 3.35
1910 4197 2.485479 GGCAGACCAGAACAAACTGAGA 60.485 50.000 0.00 0.00 39.94 3.27
1911 4198 2.545946 GCAGACCAGAACAAACTGAGAC 59.454 50.000 0.00 0.00 39.94 3.36
1912 4199 3.797039 CAGACCAGAACAAACTGAGACA 58.203 45.455 0.00 0.00 39.94 3.41
1913 4200 4.191544 CAGACCAGAACAAACTGAGACAA 58.808 43.478 0.00 0.00 39.94 3.18
1914 4201 4.635765 CAGACCAGAACAAACTGAGACAAA 59.364 41.667 0.00 0.00 39.94 2.83
1915 4202 5.123820 CAGACCAGAACAAACTGAGACAAAA 59.876 40.000 0.00 0.00 39.94 2.44
1916 4203 5.888161 AGACCAGAACAAACTGAGACAAAAT 59.112 36.000 0.00 0.00 39.94 1.82
1917 4204 7.012327 CAGACCAGAACAAACTGAGACAAAATA 59.988 37.037 0.00 0.00 39.94 1.40
1918 4205 7.556275 AGACCAGAACAAACTGAGACAAAATAA 59.444 33.333 0.00 0.00 39.94 1.40
1919 4206 7.707104 ACCAGAACAAACTGAGACAAAATAAG 58.293 34.615 0.00 0.00 39.94 1.73
1920 4207 7.339466 ACCAGAACAAACTGAGACAAAATAAGT 59.661 33.333 0.00 0.00 39.94 2.24
1921 4208 7.857885 CCAGAACAAACTGAGACAAAATAAGTC 59.142 37.037 0.00 0.00 39.94 3.01
1923 4210 9.832445 AGAACAAACTGAGACAAAATAAGTCTA 57.168 29.630 0.00 0.00 45.79 2.59
1924 4211 9.865484 GAACAAACTGAGACAAAATAAGTCTAC 57.135 33.333 0.00 0.00 45.79 2.59
1925 4212 8.073355 ACAAACTGAGACAAAATAAGTCTACG 57.927 34.615 0.00 0.00 45.79 3.51
1926 4213 6.707599 AACTGAGACAAAATAAGTCTACGC 57.292 37.500 0.00 0.00 45.79 4.42
1927 4214 5.169295 ACTGAGACAAAATAAGTCTACGCC 58.831 41.667 0.00 0.00 45.79 5.68
1928 4215 5.047235 ACTGAGACAAAATAAGTCTACGCCT 60.047 40.000 0.00 0.00 45.79 5.52
1929 4216 5.408356 TGAGACAAAATAAGTCTACGCCTC 58.592 41.667 0.00 0.00 45.79 4.70
1930 4217 5.047590 TGAGACAAAATAAGTCTACGCCTCA 60.048 40.000 0.00 0.00 45.79 3.86
1931 4218 5.790593 AGACAAAATAAGTCTACGCCTCAA 58.209 37.500 0.00 0.00 44.10 3.02
1932 4219 6.228258 AGACAAAATAAGTCTACGCCTCAAA 58.772 36.000 0.00 0.00 44.10 2.69
1933 4220 6.369065 AGACAAAATAAGTCTACGCCTCAAAG 59.631 38.462 0.00 0.00 44.10 2.77
1934 4221 5.106673 ACAAAATAAGTCTACGCCTCAAAGC 60.107 40.000 0.00 0.00 0.00 3.51
1935 4222 4.473477 AATAAGTCTACGCCTCAAAGCT 57.527 40.909 0.00 0.00 0.00 3.74
1936 4223 5.593679 AATAAGTCTACGCCTCAAAGCTA 57.406 39.130 0.00 0.00 0.00 3.32
1937 4224 2.943449 AGTCTACGCCTCAAAGCTAC 57.057 50.000 0.00 0.00 0.00 3.58
1938 4225 2.168496 AGTCTACGCCTCAAAGCTACA 58.832 47.619 0.00 0.00 0.00 2.74
1939 4226 2.561419 AGTCTACGCCTCAAAGCTACAA 59.439 45.455 0.00 0.00 0.00 2.41
1940 4227 3.195825 AGTCTACGCCTCAAAGCTACAAT 59.804 43.478 0.00 0.00 0.00 2.71
1941 4228 4.401519 AGTCTACGCCTCAAAGCTACAATA 59.598 41.667 0.00 0.00 0.00 1.90
1942 4229 5.105473 AGTCTACGCCTCAAAGCTACAATAA 60.105 40.000 0.00 0.00 0.00 1.40
1943 4230 5.579511 GTCTACGCCTCAAAGCTACAATAAA 59.420 40.000 0.00 0.00 0.00 1.40
1944 4231 4.946784 ACGCCTCAAAGCTACAATAAAG 57.053 40.909 0.00 0.00 0.00 1.85
1945 4232 4.575885 ACGCCTCAAAGCTACAATAAAGA 58.424 39.130 0.00 0.00 0.00 2.52
1946 4233 4.631813 ACGCCTCAAAGCTACAATAAAGAG 59.368 41.667 0.00 0.00 0.00 2.85
1947 4234 4.870426 CGCCTCAAAGCTACAATAAAGAGA 59.130 41.667 0.00 0.00 0.00 3.10
1948 4235 5.006165 CGCCTCAAAGCTACAATAAAGAGAG 59.994 44.000 0.00 0.00 0.00 3.20
1949 4236 6.109359 GCCTCAAAGCTACAATAAAGAGAGA 58.891 40.000 0.00 0.00 0.00 3.10
1950 4237 6.036626 GCCTCAAAGCTACAATAAAGAGAGAC 59.963 42.308 0.00 0.00 0.00 3.36
1951 4238 7.327214 CCTCAAAGCTACAATAAAGAGAGACT 58.673 38.462 0.00 0.00 0.00 3.24
1952 4239 7.277539 CCTCAAAGCTACAATAAAGAGAGACTG 59.722 40.741 0.00 0.00 0.00 3.51
1953 4240 7.896811 TCAAAGCTACAATAAAGAGAGACTGA 58.103 34.615 0.00 0.00 0.00 3.41
1954 4241 7.815068 TCAAAGCTACAATAAAGAGAGACTGAC 59.185 37.037 0.00 0.00 0.00 3.51
1955 4242 5.885881 AGCTACAATAAAGAGAGACTGACG 58.114 41.667 0.00 0.00 0.00 4.35
1956 4243 5.648526 AGCTACAATAAAGAGAGACTGACGA 59.351 40.000 0.00 0.00 0.00 4.20
1957 4244 6.151312 AGCTACAATAAAGAGAGACTGACGAA 59.849 38.462 0.00 0.00 0.00 3.85
1958 4245 6.807230 GCTACAATAAAGAGAGACTGACGAAA 59.193 38.462 0.00 0.00 0.00 3.46
1959 4246 7.489757 GCTACAATAAAGAGAGACTGACGAAAT 59.510 37.037 0.00 0.00 0.00 2.17
1960 4247 7.588143 ACAATAAAGAGAGACTGACGAAATG 57.412 36.000 0.00 0.00 0.00 2.32
1961 4248 7.378966 ACAATAAAGAGAGACTGACGAAATGA 58.621 34.615 0.00 0.00 0.00 2.57
1962 4249 7.872993 ACAATAAAGAGAGACTGACGAAATGAA 59.127 33.333 0.00 0.00 0.00 2.57
1963 4250 8.379161 CAATAAAGAGAGACTGACGAAATGAAG 58.621 37.037 0.00 0.00 0.00 3.02
1964 4251 5.713792 AAGAGAGACTGACGAAATGAAGA 57.286 39.130 0.00 0.00 0.00 2.87
1965 4252 5.713792 AGAGAGACTGACGAAATGAAGAA 57.286 39.130 0.00 0.00 0.00 2.52
1966 4253 5.708948 AGAGAGACTGACGAAATGAAGAAG 58.291 41.667 0.00 0.00 0.00 2.85
1967 4254 5.242838 AGAGAGACTGACGAAATGAAGAAGT 59.757 40.000 0.00 0.00 0.00 3.01
1968 4255 5.226396 AGAGACTGACGAAATGAAGAAGTG 58.774 41.667 0.00 0.00 0.00 3.16
1969 4256 3.743396 AGACTGACGAAATGAAGAAGTGC 59.257 43.478 0.00 0.00 0.00 4.40
1970 4257 2.808543 ACTGACGAAATGAAGAAGTGCC 59.191 45.455 0.00 0.00 0.00 5.01
1971 4258 2.807967 CTGACGAAATGAAGAAGTGCCA 59.192 45.455 0.00 0.00 0.00 4.92
1972 4259 3.411446 TGACGAAATGAAGAAGTGCCAT 58.589 40.909 0.00 0.00 0.00 4.40
1973 4260 3.436704 TGACGAAATGAAGAAGTGCCATC 59.563 43.478 0.00 0.00 0.00 3.51
1974 4261 3.411446 ACGAAATGAAGAAGTGCCATCA 58.589 40.909 0.00 0.00 0.00 3.07
1975 4262 3.438087 ACGAAATGAAGAAGTGCCATCAG 59.562 43.478 0.00 0.00 0.00 2.90
1976 4263 3.686241 CGAAATGAAGAAGTGCCATCAGA 59.314 43.478 0.00 0.00 0.00 3.27
1977 4264 4.154737 CGAAATGAAGAAGTGCCATCAGAA 59.845 41.667 0.00 0.00 0.00 3.02
1978 4265 5.382618 AAATGAAGAAGTGCCATCAGAAC 57.617 39.130 0.00 0.00 0.00 3.01
1979 4266 3.490439 TGAAGAAGTGCCATCAGAACA 57.510 42.857 0.00 0.00 0.00 3.18
1980 4267 3.405831 TGAAGAAGTGCCATCAGAACAG 58.594 45.455 0.00 0.00 0.00 3.16
1981 4268 1.818642 AGAAGTGCCATCAGAACAGC 58.181 50.000 0.00 0.00 0.00 4.40
1982 4269 1.072806 AGAAGTGCCATCAGAACAGCA 59.927 47.619 0.00 0.00 0.00 4.41
1983 4270 1.881973 GAAGTGCCATCAGAACAGCAA 59.118 47.619 0.00 0.00 36.91 3.91
1984 4271 1.985473 AGTGCCATCAGAACAGCAAA 58.015 45.000 0.00 0.00 36.91 3.68
1985 4272 2.309613 AGTGCCATCAGAACAGCAAAA 58.690 42.857 0.00 0.00 36.91 2.44
1986 4273 2.895404 AGTGCCATCAGAACAGCAAAAT 59.105 40.909 0.00 0.00 36.91 1.82
1987 4274 4.081406 AGTGCCATCAGAACAGCAAAATA 58.919 39.130 0.00 0.00 36.91 1.40
1988 4275 4.157289 AGTGCCATCAGAACAGCAAAATAG 59.843 41.667 0.00 0.00 36.91 1.73
1989 4276 4.156556 GTGCCATCAGAACAGCAAAATAGA 59.843 41.667 0.00 0.00 36.91 1.98
1990 4277 4.156556 TGCCATCAGAACAGCAAAATAGAC 59.843 41.667 0.00 0.00 30.97 2.59
1991 4278 4.397417 GCCATCAGAACAGCAAAATAGACT 59.603 41.667 0.00 0.00 0.00 3.24
1992 4279 5.586243 GCCATCAGAACAGCAAAATAGACTA 59.414 40.000 0.00 0.00 0.00 2.59
1993 4280 6.238320 GCCATCAGAACAGCAAAATAGACTAG 60.238 42.308 0.00 0.00 0.00 2.57
1994 4281 7.044181 CCATCAGAACAGCAAAATAGACTAGA 58.956 38.462 0.00 0.00 0.00 2.43
1995 4282 7.714377 CCATCAGAACAGCAAAATAGACTAGAT 59.286 37.037 0.00 0.00 0.00 1.98
1996 4283 9.107177 CATCAGAACAGCAAAATAGACTAGATT 57.893 33.333 0.00 0.00 0.00 2.40
1997 4284 8.709386 TCAGAACAGCAAAATAGACTAGATTC 57.291 34.615 0.00 0.00 0.00 2.52
1998 4285 8.314021 TCAGAACAGCAAAATAGACTAGATTCA 58.686 33.333 0.00 0.00 0.00 2.57
1999 4286 8.939929 CAGAACAGCAAAATAGACTAGATTCAA 58.060 33.333 0.00 0.00 0.00 2.69
2000 4287 9.507329 AGAACAGCAAAATAGACTAGATTCAAA 57.493 29.630 0.00 0.00 0.00 2.69
2012 4299 8.324191 AGACTAGATTCAAAATAGATGACCCA 57.676 34.615 0.00 0.00 0.00 4.51
2013 4300 8.772250 AGACTAGATTCAAAATAGATGACCCAA 58.228 33.333 0.00 0.00 0.00 4.12
2014 4301 8.738645 ACTAGATTCAAAATAGATGACCCAAC 57.261 34.615 0.00 0.00 0.00 3.77
2015 4302 8.552296 ACTAGATTCAAAATAGATGACCCAACT 58.448 33.333 0.00 0.00 0.00 3.16
2016 4303 9.401058 CTAGATTCAAAATAGATGACCCAACTT 57.599 33.333 0.00 0.00 0.00 2.66
2017 4304 8.655935 AGATTCAAAATAGATGACCCAACTTT 57.344 30.769 0.00 0.00 0.00 2.66
2018 4305 8.526147 AGATTCAAAATAGATGACCCAACTTTG 58.474 33.333 0.00 0.00 0.00 2.77
2019 4306 7.595819 TTCAAAATAGATGACCCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
2020 4307 8.698973 TTCAAAATAGATGACCCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
2021 4308 8.877864 TCAAAATAGATGACCCAACTTTGTAT 57.122 30.769 0.00 0.00 0.00 2.29
2022 4309 9.308000 TCAAAATAGATGACCCAACTTTGTATT 57.692 29.630 0.00 0.00 0.00 1.89
2027 4314 9.975218 ATAGATGACCCAACTTTGTATTAAAGT 57.025 29.630 0.00 0.00 41.82 2.66
2029 4316 9.802039 AGATGACCCAACTTTGTATTAAAGTTA 57.198 29.630 15.03 3.25 45.57 2.24
2031 4318 8.983702 TGACCCAACTTTGTATTAAAGTTAGT 57.016 30.769 15.03 14.80 45.57 2.24
2060 4347 9.492973 AAAATTGGGTCATCTATTTTGAAACAG 57.507 29.630 0.00 0.00 31.14 3.16
2061 4348 8.421249 AATTGGGTCATCTATTTTGAAACAGA 57.579 30.769 0.00 0.00 0.00 3.41
2062 4349 7.452880 TTGGGTCATCTATTTTGAAACAGAG 57.547 36.000 0.00 0.00 0.00 3.35
2063 4350 5.945784 TGGGTCATCTATTTTGAAACAGAGG 59.054 40.000 0.00 0.00 0.00 3.69
2064 4351 5.358160 GGGTCATCTATTTTGAAACAGAGGG 59.642 44.000 0.00 0.00 0.00 4.30
2065 4352 6.180472 GGTCATCTATTTTGAAACAGAGGGA 58.820 40.000 0.00 0.00 0.00 4.20
2066 4353 6.317391 GGTCATCTATTTTGAAACAGAGGGAG 59.683 42.308 0.00 0.00 0.00 4.30
2130 4419 1.435515 GTGGCAAACCGCTTGTGAA 59.564 52.632 0.00 0.00 43.60 3.18
2166 4455 3.408288 AGCACGTTCGATTCTCTAGAC 57.592 47.619 0.00 0.00 0.00 2.59
2254 4548 4.036144 GCTTAGATTTGGTGAGCCATCTTC 59.964 45.833 0.00 0.00 45.56 2.87
2256 4550 3.350833 AGATTTGGTGAGCCATCTTCAC 58.649 45.455 0.00 0.00 45.56 3.18
2297 4601 6.865834 ACATTCATGTCTTCTTCCTAGACT 57.134 37.500 0.00 0.00 41.99 3.24
2408 4849 0.112218 TGGTGCACTTGGCCACTATT 59.888 50.000 17.98 0.00 43.89 1.73
2532 4981 5.760253 CACTACCCCATGTCTGCTAATTTAG 59.240 44.000 0.00 0.00 0.00 1.85
2557 5468 9.939802 AGTGGGTTACTCTTTTAATTACTACAG 57.060 33.333 0.00 0.00 33.17 2.74
2558 5469 8.663025 GTGGGTTACTCTTTTAATTACTACAGC 58.337 37.037 0.00 0.00 0.00 4.40
2559 5470 8.599792 TGGGTTACTCTTTTAATTACTACAGCT 58.400 33.333 0.00 0.00 0.00 4.24
2560 5471 9.096160 GGGTTACTCTTTTAATTACTACAGCTC 57.904 37.037 0.00 0.00 0.00 4.09
2561 5472 8.805688 GGTTACTCTTTTAATTACTACAGCTCG 58.194 37.037 0.00 0.00 0.00 5.03
2562 5473 9.351570 GTTACTCTTTTAATTACTACAGCTCGT 57.648 33.333 0.00 0.00 0.00 4.18
2565 5476 9.570488 ACTCTTTTAATTACTACAGCTCGTAAG 57.430 33.333 6.12 0.00 0.00 2.34
2648 5589 8.398743 TGGTGTTCCTCATCCATAGACTATATA 58.601 37.037 0.00 0.00 34.23 0.86
2649 5590 9.427821 GGTGTTCCTCATCCATAGACTATATAT 57.572 37.037 0.00 0.00 0.00 0.86
2691 5739 3.671716 ACTTTGTGGTATTCCTCGTTCC 58.328 45.455 0.00 0.00 34.23 3.62
2762 5852 2.138535 ATGGCCCAGGATAAGGATCA 57.861 50.000 0.00 0.00 33.27 2.92
2949 6062 2.030946 CGCCACAAAATCTACTAGCTGC 59.969 50.000 0.00 0.00 0.00 5.25
2968 6084 4.181578 CTGCAACGTGCCTAACTAGTTAT 58.818 43.478 15.57 0.00 44.23 1.89
3204 6330 1.035923 CTTCGGCAGGAGCTAGATCA 58.964 55.000 10.68 0.00 41.70 2.92
3316 6449 2.422597 TCTTAGACGCATTTGGGTGTG 58.577 47.619 4.88 0.00 41.50 3.82
3395 6528 6.783708 TTCTTGAACAAACAAAGGGTACAT 57.216 33.333 0.00 0.00 0.00 2.29
3437 6570 7.456253 CATTAACTAGAAACAAGTGGATCACG 58.544 38.462 0.00 0.00 39.64 4.35
3456 6589 3.307782 CACGTCGTTTTACAACAGGACTT 59.692 43.478 0.00 0.00 32.54 3.01
3457 6590 3.307782 ACGTCGTTTTACAACAGGACTTG 59.692 43.478 0.00 0.00 32.54 3.16
3472 6606 6.867550 ACAGGACTTGAAAGAAAAAGGAAAG 58.132 36.000 0.00 0.00 0.00 2.62
3507 6641 6.218108 ACCTAGTTATTACAAAGAGGACCG 57.782 41.667 0.00 0.00 0.00 4.79
3528 6662 3.609175 CGCCAAATGTCATTGAAACTCGT 60.609 43.478 0.00 0.00 31.84 4.18
3573 6707 4.166246 TCTCAAGCCCGAATCTAGTCTA 57.834 45.455 0.00 0.00 0.00 2.59
3584 6718 5.357314 CCGAATCTAGTCTAGTCTTCACCAA 59.643 44.000 17.45 0.00 0.00 3.67
3624 6758 2.822399 GAGCCCTCCATGGTACCG 59.178 66.667 12.58 0.00 0.00 4.02
3636 6770 1.743995 GGTACCGCGCCATGAACTT 60.744 57.895 0.00 0.00 0.00 2.66
3659 6793 2.729194 AGACGAAGATGTAGTGCCTCT 58.271 47.619 0.00 0.00 0.00 3.69
3691 6825 0.037447 GCTGGGAGGAAGAAGCAAGT 59.963 55.000 0.00 0.00 35.69 3.16
3701 6835 3.569701 GGAAGAAGCAAGTTCACCATTCA 59.430 43.478 0.00 0.00 37.67 2.57
3729 6863 4.889409 ACAGATTTAATGGCGATGATTGGT 59.111 37.500 0.00 0.00 0.00 3.67
3732 6866 7.231317 ACAGATTTAATGGCGATGATTGGTATT 59.769 33.333 0.00 0.00 0.00 1.89
3762 6896 0.035458 CTGGGCGTCAAAGTCCTTCT 59.965 55.000 0.00 0.00 36.69 2.85
3769 6903 2.030540 CGTCAAAGTCCTTCTACGGTCA 60.031 50.000 6.34 0.00 31.32 4.02
3774 6908 2.537143 AGTCCTTCTACGGTCACCATT 58.463 47.619 0.00 0.00 0.00 3.16
3775 6909 3.705051 AGTCCTTCTACGGTCACCATTA 58.295 45.455 0.00 0.00 0.00 1.90
3799 6933 5.307456 AGTGATGAGCATGAACTCCATCTAT 59.693 40.000 0.00 0.00 35.72 1.98
3811 6945 7.535738 TGAACTCCATCTATATCTCCACCTTA 58.464 38.462 0.00 0.00 0.00 2.69
3899 7034 3.879295 TCAAGTAGCCATGCAAGCTTATC 59.121 43.478 18.51 10.43 41.83 1.75
3900 7035 2.487934 AGTAGCCATGCAAGCTTATCG 58.512 47.619 18.51 0.00 41.83 2.92
3901 7036 2.158900 AGTAGCCATGCAAGCTTATCGT 60.159 45.455 18.51 0.00 41.83 3.73
3903 7038 0.041839 GCCATGCAAGCTTATCGTCG 60.042 55.000 0.00 0.00 0.00 5.12
3912 7048 1.606350 GCTTATCGTCGAATCGCCGG 61.606 60.000 6.19 0.00 0.00 6.13
3926 7062 4.147449 CCGGCGATGCACTCCTCA 62.147 66.667 9.30 0.00 0.00 3.86
3969 7105 0.841961 ATAGCCAGGATTGCAGCTGA 59.158 50.000 20.43 0.00 36.79 4.26
3988 7124 2.663196 GCTAGCCACCGACCACTT 59.337 61.111 2.29 0.00 0.00 3.16
4026 7162 1.153524 TGCTCCACCATGGCAAAGT 59.846 52.632 13.04 0.00 37.47 2.66
4028 7164 1.181098 GCTCCACCATGGCAAAGTGT 61.181 55.000 13.04 0.00 37.47 3.55
4042 7178 1.101049 AAGTGTCAAACGCCACAGGG 61.101 55.000 0.00 0.00 33.99 4.45
4120 7257 1.361668 CGAGCTTGCAACACCGCTAT 61.362 55.000 10.56 0.00 31.96 2.97
4141 7278 2.326428 GGAAGATTAGGGATCGGGTCA 58.674 52.381 0.00 0.00 39.85 4.02
4146 7283 3.388350 AGATTAGGGATCGGGTCAAGAAC 59.612 47.826 0.00 0.00 39.85 3.01
4148 7285 1.196012 AGGGATCGGGTCAAGAACTC 58.804 55.000 0.00 0.00 0.00 3.01
4149 7286 1.196012 GGGATCGGGTCAAGAACTCT 58.804 55.000 0.00 0.00 0.00 3.24
4150 7287 1.137282 GGGATCGGGTCAAGAACTCTC 59.863 57.143 0.00 0.00 0.00 3.20
4151 7288 2.104170 GGATCGGGTCAAGAACTCTCT 58.896 52.381 0.00 0.00 0.00 3.10
4152 7289 2.100087 GGATCGGGTCAAGAACTCTCTC 59.900 54.545 0.00 0.00 0.00 3.20
4153 7290 2.588464 TCGGGTCAAGAACTCTCTCT 57.412 50.000 0.00 0.00 0.00 3.10
4154 7291 2.438411 TCGGGTCAAGAACTCTCTCTC 58.562 52.381 0.00 0.00 0.00 3.20
4155 7292 2.040545 TCGGGTCAAGAACTCTCTCTCT 59.959 50.000 0.00 0.00 0.00 3.10
4189 7326 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4190 7327 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4196 7333 3.309296 TCTCTCTCTCTCTCTCCTCTCC 58.691 54.545 0.00 0.00 0.00 3.71
4197 7334 3.051803 TCTCTCTCTCTCTCTCCTCTCCT 60.052 52.174 0.00 0.00 0.00 3.69
4198 7335 4.170053 TCTCTCTCTCTCTCTCCTCTCCTA 59.830 50.000 0.00 0.00 0.00 2.94
4199 7336 4.483950 TCTCTCTCTCTCTCCTCTCCTAG 58.516 52.174 0.00 0.00 0.00 3.02
4200 7337 2.972713 TCTCTCTCTCTCCTCTCCTAGC 59.027 54.545 0.00 0.00 0.00 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 2.899838 TGCAGCAGCGTTTCCGTT 60.900 55.556 0.00 0.00 46.23 4.44
121 122 2.679837 CAGCCATCCTGATACACACAAC 59.320 50.000 0.00 0.00 44.64 3.32
261 1781 1.092921 GCACGTCACAAGAACCACCA 61.093 55.000 0.00 0.00 0.00 4.17
284 1804 3.858877 GCGGTTTGGTTGTTAATCATGCA 60.859 43.478 0.00 0.00 0.00 3.96
294 1814 2.030274 GCTTAATCAGCGGTTTGGTTGT 60.030 45.455 0.00 0.00 39.29 3.32
352 1872 4.753233 CATTTGGCGGGAATTTTGTATCA 58.247 39.130 0.00 0.00 0.00 2.15
353 1873 3.555547 GCATTTGGCGGGAATTTTGTATC 59.444 43.478 0.00 0.00 0.00 2.24
383 1903 2.564947 AGGTCATCAGTCTCACTGGTTC 59.435 50.000 3.86 0.00 45.94 3.62
403 1923 1.442769 AACTGGCGACATTGCTACAG 58.557 50.000 0.00 0.00 41.51 2.74
416 1936 1.003580 TGGACTGGAGATCAAACTGGC 59.996 52.381 0.00 0.00 0.00 4.85
448 1968 5.559035 CGAGGAAGCTGTTTCACTTTTACAG 60.559 44.000 6.58 0.00 41.64 2.74
449 1969 4.272504 CGAGGAAGCTGTTTCACTTTTACA 59.727 41.667 6.58 0.00 37.54 2.41
453 1973 2.919228 ACGAGGAAGCTGTTTCACTTT 58.081 42.857 6.58 0.00 37.54 2.66
480 2000 3.496507 AGCTCTGCGAAGAAAAGAACTTC 59.503 43.478 0.00 0.00 39.92 3.01
517 2038 6.313905 CGAGAAAGGCACAATTACTGAACTAT 59.686 38.462 0.00 0.00 0.00 2.12
535 2056 5.551760 ATCAAAATGTAGGCACGAGAAAG 57.448 39.130 0.00 0.00 0.00 2.62
570 2092 1.946768 GGCTGTTGAGTGTGCTGTTAA 59.053 47.619 0.00 0.00 0.00 2.01
595 2760 4.331622 ACGGGTCGTCATCAGCTA 57.668 55.556 0.00 0.00 33.69 3.32
615 2780 1.073548 GTGGCCCGGTTTACTTCCA 59.926 57.895 0.00 0.00 0.00 3.53
626 2841 2.188062 TGGTTTTAGTTAGTGGCCCG 57.812 50.000 0.00 0.00 0.00 6.13
651 2866 1.180029 TACGGTGGAGCTTACTGGAC 58.820 55.000 13.46 0.00 0.00 4.02
676 2901 2.866085 CTAGCTCACTGGTGGCTGGC 62.866 65.000 19.32 0.00 37.56 4.85
703 2928 2.748798 GCCCTCATCATTGCATCACTCT 60.749 50.000 0.00 0.00 0.00 3.24
879 3107 1.000506 GAGGTATTTATGGCGGCGAGA 59.999 52.381 12.98 0.00 0.00 4.04
966 3206 3.967401 GACTAATCGACAAGCTAGGGTC 58.033 50.000 0.00 0.00 0.00 4.46
1353 3594 4.722700 ACCTTGCGCGCCAGGAAT 62.723 61.111 46.14 28.90 0.00 3.01
1383 3624 0.595825 CGATGATGTAGAGCAGCGCA 60.596 55.000 11.47 0.00 40.87 6.09
1500 3741 2.301738 GGTGCCCTTGGAGTAGCCT 61.302 63.158 0.00 0.00 37.63 4.58
1766 4053 3.412237 TTTTTGGAACGGAGGGAGTAG 57.588 47.619 0.00 0.00 0.00 2.57
1783 4070 5.995282 GGAACCCCTTTCGATCAAAATTTTT 59.005 36.000 0.00 0.00 34.67 1.94
1784 4071 5.547465 GGAACCCCTTTCGATCAAAATTTT 58.453 37.500 0.00 0.00 34.67 1.82
1785 4072 5.147330 GGAACCCCTTTCGATCAAAATTT 57.853 39.130 0.00 0.00 34.67 1.82
1786 4073 4.801330 GGAACCCCTTTCGATCAAAATT 57.199 40.909 0.00 0.00 34.67 1.82
1807 4094 5.113383 GTTTTTAATAAAATGGAGCGGGGG 58.887 41.667 0.00 0.00 35.80 5.40
1808 4095 4.801516 CGTTTTTAATAAAATGGAGCGGGG 59.198 41.667 0.00 0.00 36.86 5.73
1809 4096 5.942325 CGTTTTTAATAAAATGGAGCGGG 57.058 39.130 0.00 0.00 36.86 6.13
1816 4103 6.947680 CGCTTTGCTCCGTTTTTAATAAAATG 59.052 34.615 0.00 0.00 39.10 2.32
1817 4104 6.400621 GCGCTTTGCTCCGTTTTTAATAAAAT 60.401 34.615 0.00 0.00 41.73 1.82
1818 4105 5.107798 GCGCTTTGCTCCGTTTTTAATAAAA 60.108 36.000 0.00 0.00 41.73 1.52
1819 4106 4.383351 GCGCTTTGCTCCGTTTTTAATAAA 59.617 37.500 0.00 0.00 41.73 1.40
1820 4107 3.915569 GCGCTTTGCTCCGTTTTTAATAA 59.084 39.130 0.00 0.00 41.73 1.40
1821 4108 3.058155 TGCGCTTTGCTCCGTTTTTAATA 60.058 39.130 9.73 0.00 46.63 0.98
1822 4109 2.287909 TGCGCTTTGCTCCGTTTTTAAT 60.288 40.909 9.73 0.00 46.63 1.40
1823 4110 1.065701 TGCGCTTTGCTCCGTTTTTAA 59.934 42.857 9.73 0.00 46.63 1.52
1824 4111 0.663688 TGCGCTTTGCTCCGTTTTTA 59.336 45.000 9.73 0.00 46.63 1.52
1825 4112 0.179124 TTGCGCTTTGCTCCGTTTTT 60.179 45.000 9.73 0.00 46.63 1.94
1826 4113 0.594796 CTTGCGCTTTGCTCCGTTTT 60.595 50.000 9.73 0.00 46.63 2.43
1827 4114 1.008538 CTTGCGCTTTGCTCCGTTT 60.009 52.632 9.73 0.00 46.63 3.60
1828 4115 2.117941 GACTTGCGCTTTGCTCCGTT 62.118 55.000 9.73 0.00 46.63 4.44
1829 4116 2.591715 ACTTGCGCTTTGCTCCGT 60.592 55.556 9.73 0.00 46.63 4.69
1830 4117 2.116736 TTGACTTGCGCTTTGCTCCG 62.117 55.000 9.73 0.00 46.63 4.63
1831 4118 0.661483 GTTGACTTGCGCTTTGCTCC 60.661 55.000 9.73 0.00 46.63 4.70
1832 4119 0.029300 TGTTGACTTGCGCTTTGCTC 59.971 50.000 9.73 0.00 46.63 4.26
1833 4120 0.248621 GTGTTGACTTGCGCTTTGCT 60.249 50.000 9.73 0.00 46.63 3.91
1834 4121 1.531522 CGTGTTGACTTGCGCTTTGC 61.532 55.000 9.73 0.00 46.70 3.68
1835 4122 0.929824 CCGTGTTGACTTGCGCTTTG 60.930 55.000 9.73 0.58 0.00 2.77
1836 4123 1.092921 TCCGTGTTGACTTGCGCTTT 61.093 50.000 9.73 0.00 0.00 3.51
1837 4124 1.522806 TCCGTGTTGACTTGCGCTT 60.523 52.632 9.73 0.00 0.00 4.68
1838 4125 2.108157 TCCGTGTTGACTTGCGCT 59.892 55.556 9.73 0.00 0.00 5.92
1839 4126 2.244651 AGTCCGTGTTGACTTGCGC 61.245 57.895 0.00 0.00 42.92 6.09
1840 4127 1.151777 ACAGTCCGTGTTGACTTGCG 61.152 55.000 0.00 0.00 42.92 4.85
1841 4128 2.690326 ACAGTCCGTGTTGACTTGC 58.310 52.632 0.00 0.00 42.92 4.01
1849 4136 2.319136 TTGCTTGTAACAGTCCGTGT 57.681 45.000 0.00 0.00 43.24 4.49
1850 4137 2.805671 TGATTGCTTGTAACAGTCCGTG 59.194 45.455 0.00 0.00 0.00 4.94
1851 4138 3.067106 CTGATTGCTTGTAACAGTCCGT 58.933 45.455 0.00 0.00 0.00 4.69
1852 4139 2.416547 CCTGATTGCTTGTAACAGTCCG 59.583 50.000 0.00 0.00 0.00 4.79
1853 4140 2.162408 GCCTGATTGCTTGTAACAGTCC 59.838 50.000 0.00 0.00 0.00 3.85
1854 4141 2.162408 GGCCTGATTGCTTGTAACAGTC 59.838 50.000 0.00 0.00 0.00 3.51
1855 4142 2.162681 GGCCTGATTGCTTGTAACAGT 58.837 47.619 0.00 0.00 0.00 3.55
1856 4143 2.440409 AGGCCTGATTGCTTGTAACAG 58.560 47.619 3.11 0.00 0.00 3.16
1857 4144 2.584835 AGGCCTGATTGCTTGTAACA 57.415 45.000 3.11 0.00 0.00 2.41
1858 4145 2.683362 GGTAGGCCTGATTGCTTGTAAC 59.317 50.000 17.99 0.00 0.00 2.50
1859 4146 2.356741 GGGTAGGCCTGATTGCTTGTAA 60.357 50.000 17.99 0.00 34.45 2.41
1860 4147 1.211949 GGGTAGGCCTGATTGCTTGTA 59.788 52.381 17.99 0.00 34.45 2.41
1861 4148 0.034089 GGGTAGGCCTGATTGCTTGT 60.034 55.000 17.99 0.00 34.45 3.16
1862 4149 1.097547 CGGGTAGGCCTGATTGCTTG 61.098 60.000 17.99 0.00 43.97 4.01
1863 4150 1.224592 CGGGTAGGCCTGATTGCTT 59.775 57.895 17.99 0.00 43.97 3.91
1864 4151 1.689233 TCGGGTAGGCCTGATTGCT 60.689 57.895 17.99 0.00 44.85 3.91
1865 4152 2.908015 TCGGGTAGGCCTGATTGC 59.092 61.111 17.99 0.00 44.85 3.56
1875 4162 1.546476 GTCTGCCATCCTATCGGGTAG 59.454 57.143 0.00 0.00 35.95 3.18
1876 4163 1.629043 GTCTGCCATCCTATCGGGTA 58.371 55.000 0.00 0.00 36.25 3.69
1877 4164 1.122019 GGTCTGCCATCCTATCGGGT 61.122 60.000 0.00 0.00 33.71 5.28
1878 4165 1.121407 TGGTCTGCCATCCTATCGGG 61.121 60.000 0.00 0.00 40.46 5.14
1879 4166 0.319728 CTGGTCTGCCATCCTATCGG 59.680 60.000 0.00 0.00 45.05 4.18
1880 4167 1.332195 TCTGGTCTGCCATCCTATCG 58.668 55.000 0.00 0.00 45.05 2.92
1881 4168 2.435805 TGTTCTGGTCTGCCATCCTATC 59.564 50.000 0.00 0.00 45.05 2.08
1882 4169 2.481441 TGTTCTGGTCTGCCATCCTAT 58.519 47.619 0.00 0.00 45.05 2.57
1883 4170 1.951209 TGTTCTGGTCTGCCATCCTA 58.049 50.000 0.00 0.00 45.05 2.94
1884 4171 1.067295 TTGTTCTGGTCTGCCATCCT 58.933 50.000 0.00 0.00 45.05 3.24
1885 4172 1.541588 GTTTGTTCTGGTCTGCCATCC 59.458 52.381 0.00 0.00 45.05 3.51
1886 4173 2.227388 CAGTTTGTTCTGGTCTGCCATC 59.773 50.000 0.00 0.00 45.05 3.51
1887 4174 2.158623 TCAGTTTGTTCTGGTCTGCCAT 60.159 45.455 0.00 0.00 45.05 4.40
1888 4175 1.211703 TCAGTTTGTTCTGGTCTGCCA 59.788 47.619 0.00 0.00 43.73 4.92
1889 4176 1.876156 CTCAGTTTGTTCTGGTCTGCC 59.124 52.381 0.00 0.00 36.25 4.85
1890 4177 2.545946 GTCTCAGTTTGTTCTGGTCTGC 59.454 50.000 0.00 0.00 36.25 4.26
1891 4178 3.797039 TGTCTCAGTTTGTTCTGGTCTG 58.203 45.455 0.00 0.00 36.25 3.51
1892 4179 4.487714 TTGTCTCAGTTTGTTCTGGTCT 57.512 40.909 0.00 0.00 36.25 3.85
1893 4180 5.560966 TTTTGTCTCAGTTTGTTCTGGTC 57.439 39.130 0.00 0.00 36.25 4.02
1894 4181 7.339466 ACTTATTTTGTCTCAGTTTGTTCTGGT 59.661 33.333 0.00 0.00 36.25 4.00
1895 4182 7.707104 ACTTATTTTGTCTCAGTTTGTTCTGG 58.293 34.615 0.00 0.00 36.25 3.86
1896 4183 8.616076 AGACTTATTTTGTCTCAGTTTGTTCTG 58.384 33.333 0.00 0.00 40.35 3.02
1897 4184 8.738645 AGACTTATTTTGTCTCAGTTTGTTCT 57.261 30.769 0.00 0.00 40.35 3.01
1898 4185 9.865484 GTAGACTTATTTTGTCTCAGTTTGTTC 57.135 33.333 0.00 0.00 42.95 3.18
1899 4186 8.548721 CGTAGACTTATTTTGTCTCAGTTTGTT 58.451 33.333 0.00 0.00 42.95 2.83
1900 4187 7.307219 GCGTAGACTTATTTTGTCTCAGTTTGT 60.307 37.037 0.00 0.00 42.95 2.83
1901 4188 7.010023 GCGTAGACTTATTTTGTCTCAGTTTG 58.990 38.462 0.00 0.00 42.95 2.93
1902 4189 6.147328 GGCGTAGACTTATTTTGTCTCAGTTT 59.853 38.462 0.00 0.00 42.95 2.66
1903 4190 5.638234 GGCGTAGACTTATTTTGTCTCAGTT 59.362 40.000 0.00 0.00 42.95 3.16
1904 4191 5.169295 GGCGTAGACTTATTTTGTCTCAGT 58.831 41.667 0.00 0.00 42.95 3.41
1905 4192 5.704217 GGCGTAGACTTATTTTGTCTCAG 57.296 43.478 0.00 0.00 42.95 3.35
1919 4206 2.649331 TGTAGCTTTGAGGCGTAGAC 57.351 50.000 0.00 0.00 37.29 2.59
1920 4207 3.887621 ATTGTAGCTTTGAGGCGTAGA 57.112 42.857 0.00 0.00 37.29 2.59
1921 4208 5.810587 TCTTTATTGTAGCTTTGAGGCGTAG 59.189 40.000 0.00 0.00 37.29 3.51
1922 4209 5.726397 TCTTTATTGTAGCTTTGAGGCGTA 58.274 37.500 0.00 0.00 37.29 4.42
1923 4210 4.575885 TCTTTATTGTAGCTTTGAGGCGT 58.424 39.130 0.00 0.00 37.29 5.68
1924 4211 4.870426 TCTCTTTATTGTAGCTTTGAGGCG 59.130 41.667 0.00 0.00 37.29 5.52
1925 4212 6.036626 GTCTCTCTTTATTGTAGCTTTGAGGC 59.963 42.308 0.00 0.00 0.00 4.70
1926 4213 7.277539 CAGTCTCTCTTTATTGTAGCTTTGAGG 59.722 40.741 0.00 0.00 0.00 3.86
1927 4214 8.031864 TCAGTCTCTCTTTATTGTAGCTTTGAG 58.968 37.037 0.00 0.00 0.00 3.02
1928 4215 7.815068 GTCAGTCTCTCTTTATTGTAGCTTTGA 59.185 37.037 0.00 0.00 0.00 2.69
1929 4216 7.201393 CGTCAGTCTCTCTTTATTGTAGCTTTG 60.201 40.741 0.00 0.00 0.00 2.77
1930 4217 6.809196 CGTCAGTCTCTCTTTATTGTAGCTTT 59.191 38.462 0.00 0.00 0.00 3.51
1931 4218 6.151312 TCGTCAGTCTCTCTTTATTGTAGCTT 59.849 38.462 0.00 0.00 0.00 3.74
1932 4219 5.648526 TCGTCAGTCTCTCTTTATTGTAGCT 59.351 40.000 0.00 0.00 0.00 3.32
1933 4220 5.881447 TCGTCAGTCTCTCTTTATTGTAGC 58.119 41.667 0.00 0.00 0.00 3.58
1934 4221 8.802856 CATTTCGTCAGTCTCTCTTTATTGTAG 58.197 37.037 0.00 0.00 0.00 2.74
1935 4222 8.520351 TCATTTCGTCAGTCTCTCTTTATTGTA 58.480 33.333 0.00 0.00 0.00 2.41
1936 4223 7.378966 TCATTTCGTCAGTCTCTCTTTATTGT 58.621 34.615 0.00 0.00 0.00 2.71
1937 4224 7.818493 TCATTTCGTCAGTCTCTCTTTATTG 57.182 36.000 0.00 0.00 0.00 1.90
1938 4225 8.307483 TCTTCATTTCGTCAGTCTCTCTTTATT 58.693 33.333 0.00 0.00 0.00 1.40
1939 4226 7.831753 TCTTCATTTCGTCAGTCTCTCTTTAT 58.168 34.615 0.00 0.00 0.00 1.40
1940 4227 7.215719 TCTTCATTTCGTCAGTCTCTCTTTA 57.784 36.000 0.00 0.00 0.00 1.85
1941 4228 6.090483 TCTTCATTTCGTCAGTCTCTCTTT 57.910 37.500 0.00 0.00 0.00 2.52
1942 4229 5.713792 TCTTCATTTCGTCAGTCTCTCTT 57.286 39.130 0.00 0.00 0.00 2.85
1943 4230 5.242838 ACTTCTTCATTTCGTCAGTCTCTCT 59.757 40.000 0.00 0.00 0.00 3.10
1944 4231 5.344665 CACTTCTTCATTTCGTCAGTCTCTC 59.655 44.000 0.00 0.00 0.00 3.20
1945 4232 5.226396 CACTTCTTCATTTCGTCAGTCTCT 58.774 41.667 0.00 0.00 0.00 3.10
1946 4233 4.143221 GCACTTCTTCATTTCGTCAGTCTC 60.143 45.833 0.00 0.00 0.00 3.36
1947 4234 3.743396 GCACTTCTTCATTTCGTCAGTCT 59.257 43.478 0.00 0.00 0.00 3.24
1948 4235 3.120511 GGCACTTCTTCATTTCGTCAGTC 60.121 47.826 0.00 0.00 0.00 3.51
1949 4236 2.808543 GGCACTTCTTCATTTCGTCAGT 59.191 45.455 0.00 0.00 0.00 3.41
1950 4237 2.807967 TGGCACTTCTTCATTTCGTCAG 59.192 45.455 0.00 0.00 0.00 3.51
1951 4238 2.844946 TGGCACTTCTTCATTTCGTCA 58.155 42.857 0.00 0.00 0.00 4.35
1952 4239 3.436704 TGATGGCACTTCTTCATTTCGTC 59.563 43.478 0.00 0.00 0.00 4.20
1953 4240 3.411446 TGATGGCACTTCTTCATTTCGT 58.589 40.909 0.00 0.00 0.00 3.85
1954 4241 3.686241 TCTGATGGCACTTCTTCATTTCG 59.314 43.478 0.00 0.00 0.00 3.46
1955 4242 5.048504 TGTTCTGATGGCACTTCTTCATTTC 60.049 40.000 0.00 0.00 0.00 2.17
1956 4243 4.828939 TGTTCTGATGGCACTTCTTCATTT 59.171 37.500 0.00 0.00 0.00 2.32
1957 4244 4.401022 TGTTCTGATGGCACTTCTTCATT 58.599 39.130 0.00 0.00 0.00 2.57
1958 4245 4.008330 CTGTTCTGATGGCACTTCTTCAT 58.992 43.478 0.00 0.00 0.00 2.57
1959 4246 3.405831 CTGTTCTGATGGCACTTCTTCA 58.594 45.455 0.00 0.00 0.00 3.02
1960 4247 2.161211 GCTGTTCTGATGGCACTTCTTC 59.839 50.000 0.00 0.00 0.00 2.87
1961 4248 2.157738 GCTGTTCTGATGGCACTTCTT 58.842 47.619 0.00 0.00 0.00 2.52
1962 4249 1.072806 TGCTGTTCTGATGGCACTTCT 59.927 47.619 0.00 0.00 0.00 2.85
1963 4250 1.527034 TGCTGTTCTGATGGCACTTC 58.473 50.000 0.00 0.00 0.00 3.01
1964 4251 1.985473 TTGCTGTTCTGATGGCACTT 58.015 45.000 0.00 0.00 34.30 3.16
1965 4252 1.985473 TTTGCTGTTCTGATGGCACT 58.015 45.000 0.00 0.00 34.30 4.40
1966 4253 2.798976 TTTTGCTGTTCTGATGGCAC 57.201 45.000 0.00 0.00 34.30 5.01
1967 4254 4.156556 GTCTATTTTGCTGTTCTGATGGCA 59.843 41.667 0.00 0.00 0.00 4.92
1968 4255 4.397417 AGTCTATTTTGCTGTTCTGATGGC 59.603 41.667 0.00 0.00 0.00 4.40
1969 4256 7.044181 TCTAGTCTATTTTGCTGTTCTGATGG 58.956 38.462 0.00 0.00 0.00 3.51
1970 4257 8.659925 ATCTAGTCTATTTTGCTGTTCTGATG 57.340 34.615 0.00 0.00 0.00 3.07
1971 4258 9.323985 GAATCTAGTCTATTTTGCTGTTCTGAT 57.676 33.333 0.00 0.00 0.00 2.90
1972 4259 8.314021 TGAATCTAGTCTATTTTGCTGTTCTGA 58.686 33.333 0.00 0.00 0.00 3.27
1973 4260 8.484641 TGAATCTAGTCTATTTTGCTGTTCTG 57.515 34.615 0.00 0.00 0.00 3.02
1974 4261 9.507329 TTTGAATCTAGTCTATTTTGCTGTTCT 57.493 29.630 0.00 0.00 0.00 3.01
1986 4273 9.434275 TGGGTCATCTATTTTGAATCTAGTCTA 57.566 33.333 0.00 0.00 0.00 2.59
1987 4274 8.324191 TGGGTCATCTATTTTGAATCTAGTCT 57.676 34.615 0.00 0.00 0.00 3.24
1988 4275 8.831550 GTTGGGTCATCTATTTTGAATCTAGTC 58.168 37.037 0.00 0.00 0.00 2.59
1989 4276 8.552296 AGTTGGGTCATCTATTTTGAATCTAGT 58.448 33.333 0.00 0.00 0.00 2.57
1990 4277 8.970859 AGTTGGGTCATCTATTTTGAATCTAG 57.029 34.615 0.00 0.00 0.00 2.43
1991 4278 9.753674 AAAGTTGGGTCATCTATTTTGAATCTA 57.246 29.630 0.00 0.00 0.00 1.98
1992 4279 8.526147 CAAAGTTGGGTCATCTATTTTGAATCT 58.474 33.333 0.00 0.00 0.00 2.40
1993 4280 8.306761 ACAAAGTTGGGTCATCTATTTTGAATC 58.693 33.333 0.00 0.00 0.00 2.52
1994 4281 8.193953 ACAAAGTTGGGTCATCTATTTTGAAT 57.806 30.769 0.00 0.00 0.00 2.57
1995 4282 7.595819 ACAAAGTTGGGTCATCTATTTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
1996 4283 8.877864 ATACAAAGTTGGGTCATCTATTTTGA 57.122 30.769 0.00 0.00 0.00 2.69
2001 4288 9.975218 ACTTTAATACAAAGTTGGGTCATCTAT 57.025 29.630 0.00 0.00 37.18 1.98
2002 4289 9.802039 AACTTTAATACAAAGTTGGGTCATCTA 57.198 29.630 12.88 0.00 45.58 1.98
2003 4290 8.706322 AACTTTAATACAAAGTTGGGTCATCT 57.294 30.769 12.88 0.00 45.58 2.90
2005 4292 9.582648 ACTAACTTTAATACAAAGTTGGGTCAT 57.417 29.630 21.95 6.17 46.38 3.06
2006 4293 8.983702 ACTAACTTTAATACAAAGTTGGGTCA 57.016 30.769 21.95 6.46 46.38 4.02
2034 4321 9.492973 CTGTTTCAAAATAGATGACCCAATTTT 57.507 29.630 0.00 0.00 33.07 1.82
2035 4322 8.869109 TCTGTTTCAAAATAGATGACCCAATTT 58.131 29.630 0.00 0.00 32.24 1.82
2036 4323 8.421249 TCTGTTTCAAAATAGATGACCCAATT 57.579 30.769 0.00 0.00 32.24 2.32
2037 4324 7.123247 CCTCTGTTTCAAAATAGATGACCCAAT 59.877 37.037 2.91 0.00 35.92 3.16
2038 4325 6.434028 CCTCTGTTTCAAAATAGATGACCCAA 59.566 38.462 2.91 0.00 35.92 4.12
2039 4326 5.945784 CCTCTGTTTCAAAATAGATGACCCA 59.054 40.000 2.91 0.00 35.92 4.51
2040 4327 5.358160 CCCTCTGTTTCAAAATAGATGACCC 59.642 44.000 2.91 0.00 35.92 4.46
2041 4328 6.180472 TCCCTCTGTTTCAAAATAGATGACC 58.820 40.000 2.91 0.00 35.92 4.02
2042 4329 6.881602 ACTCCCTCTGTTTCAAAATAGATGAC 59.118 38.462 2.91 0.00 35.92 3.06
2043 4330 7.020827 ACTCCCTCTGTTTCAAAATAGATGA 57.979 36.000 2.91 3.20 35.92 2.92
2044 4331 8.043710 ACTACTCCCTCTGTTTCAAAATAGATG 58.956 37.037 2.91 1.27 35.92 2.90
2045 4332 8.152023 ACTACTCCCTCTGTTTCAAAATAGAT 57.848 34.615 2.91 0.00 35.92 1.98
2046 4333 7.554959 ACTACTCCCTCTGTTTCAAAATAGA 57.445 36.000 2.56 2.56 35.32 1.98
2047 4334 9.372369 CTAACTACTCCCTCTGTTTCAAAATAG 57.628 37.037 0.00 0.00 0.00 1.73
2048 4335 8.877195 ACTAACTACTCCCTCTGTTTCAAAATA 58.123 33.333 0.00 0.00 0.00 1.40
2049 4336 7.746703 ACTAACTACTCCCTCTGTTTCAAAAT 58.253 34.615 0.00 0.00 0.00 1.82
2050 4337 7.133133 ACTAACTACTCCCTCTGTTTCAAAA 57.867 36.000 0.00 0.00 0.00 2.44
2051 4338 6.742559 ACTAACTACTCCCTCTGTTTCAAA 57.257 37.500 0.00 0.00 0.00 2.69
2052 4339 6.742559 AACTAACTACTCCCTCTGTTTCAA 57.257 37.500 0.00 0.00 0.00 2.69
2053 4340 7.844493 TTAACTAACTACTCCCTCTGTTTCA 57.156 36.000 0.00 0.00 0.00 2.69
2054 4341 9.722184 AAATTAACTAACTACTCCCTCTGTTTC 57.278 33.333 0.00 0.00 0.00 2.78
2055 4342 9.503399 CAAATTAACTAACTACTCCCTCTGTTT 57.497 33.333 0.00 0.00 0.00 2.83
2056 4343 8.101419 CCAAATTAACTAACTACTCCCTCTGTT 58.899 37.037 0.00 0.00 0.00 3.16
2057 4344 7.237055 ACCAAATTAACTAACTACTCCCTCTGT 59.763 37.037 0.00 0.00 0.00 3.41
2058 4345 7.621796 ACCAAATTAACTAACTACTCCCTCTG 58.378 38.462 0.00 0.00 0.00 3.35
2059 4346 7.809880 ACCAAATTAACTAACTACTCCCTCT 57.190 36.000 0.00 0.00 0.00 3.69
2060 4347 8.098912 TGAACCAAATTAACTAACTACTCCCTC 58.901 37.037 0.00 0.00 0.00 4.30
2061 4348 7.981142 TGAACCAAATTAACTAACTACTCCCT 58.019 34.615 0.00 0.00 0.00 4.20
2062 4349 8.803397 ATGAACCAAATTAACTAACTACTCCC 57.197 34.615 0.00 0.00 0.00 4.30
2093 4382 3.519579 CACCTCACAGCTGAGTTGATAG 58.480 50.000 23.35 10.53 38.86 2.08
2130 4419 5.789710 ACGTGCTTTTTGTATAGCGTTAT 57.210 34.783 0.00 0.00 40.26 1.89
2166 4455 2.271800 GACTTTCGCACTATGTCCCTG 58.728 52.381 0.00 0.00 0.00 4.45
2254 4548 3.119065 TGTTTCCATATGCATGCTTGGTG 60.119 43.478 24.54 18.20 0.00 4.17
2256 4550 3.804786 TGTTTCCATATGCATGCTTGG 57.195 42.857 20.33 21.13 0.00 3.61
2297 4601 7.339212 ACCATATATGCAACAAAAAGTAGAGCA 59.661 33.333 7.24 0.00 37.15 4.26
2532 4981 8.663025 GCTGTAGTAATTAAAAGAGTAACCCAC 58.337 37.037 0.00 0.00 0.00 4.61
2558 5469 2.148916 TGTGACCACTTGCTTACGAG 57.851 50.000 1.62 0.00 0.00 4.18
2559 5470 2.605837 TTGTGACCACTTGCTTACGA 57.394 45.000 1.62 0.00 0.00 3.43
2560 5471 2.805671 TGATTGTGACCACTTGCTTACG 59.194 45.455 1.62 0.00 0.00 3.18
2561 5472 3.058224 GGTGATTGTGACCACTTGCTTAC 60.058 47.826 1.62 0.00 33.25 2.34
2562 5473 3.146066 GGTGATTGTGACCACTTGCTTA 58.854 45.455 1.62 0.00 33.25 3.09
2563 5474 1.956477 GGTGATTGTGACCACTTGCTT 59.044 47.619 1.62 0.00 33.25 3.91
2564 5475 1.143684 AGGTGATTGTGACCACTTGCT 59.856 47.619 1.62 0.00 35.76 3.91
2565 5476 1.537202 GAGGTGATTGTGACCACTTGC 59.463 52.381 1.62 0.00 35.76 4.01
2566 5477 1.800586 CGAGGTGATTGTGACCACTTG 59.199 52.381 1.62 0.00 35.76 3.16
2567 5478 1.691976 TCGAGGTGATTGTGACCACTT 59.308 47.619 1.62 0.00 35.76 3.16
2691 5739 6.317789 TCTGATTGCTACTTTTGAACTTGG 57.682 37.500 0.00 0.00 0.00 3.61
2762 5852 6.149474 ACATCGCTTGAGCTTGTTAATTAAGT 59.851 34.615 0.00 0.00 39.32 2.24
2788 5880 1.972588 AGGCTAATCAGTGGGGAGTT 58.027 50.000 0.00 0.00 0.00 3.01
2838 5938 6.864685 AGTTTTGTTTGCAGATGTCATACATG 59.135 34.615 0.00 0.00 39.27 3.21
2949 6062 4.630069 AGCAATAACTAGTTAGGCACGTTG 59.370 41.667 29.12 22.64 34.04 4.10
2988 6104 8.367911 CACTCTCTACAAAACTATGGGCATATA 58.632 37.037 0.00 0.00 0.00 0.86
3042 6165 8.869897 CGCAAAAGTAAGTAAGATGTCTGATAA 58.130 33.333 0.00 0.00 0.00 1.75
3044 6167 6.313905 CCGCAAAAGTAAGTAAGATGTCTGAT 59.686 38.462 0.00 0.00 0.00 2.90
3046 6169 5.408604 ACCGCAAAAGTAAGTAAGATGTCTG 59.591 40.000 0.00 0.00 0.00 3.51
3204 6330 3.106986 ATCCATACGGCGGCTTGCT 62.107 57.895 13.24 0.00 45.43 3.91
3207 6336 0.320771 GATCATCCATACGGCGGCTT 60.321 55.000 13.24 0.00 0.00 4.35
3208 6337 1.293498 GATCATCCATACGGCGGCT 59.707 57.895 13.24 0.00 0.00 5.52
3266 6399 1.594397 CGCGTGCACAATACATGATCT 59.406 47.619 18.64 0.00 0.00 2.75
3316 6449 6.705825 AGTGCAATTGTAGGGAAATTTTGAAC 59.294 34.615 7.40 0.00 0.00 3.18
3395 6528 3.806949 AATGCAACTTCTGGGTCCTTA 57.193 42.857 0.00 0.00 0.00 2.69
3422 6555 2.234300 ACGACGTGATCCACTTGTTT 57.766 45.000 0.00 0.00 31.34 2.83
3425 6558 3.491639 TGTAAAACGACGTGATCCACTTG 59.508 43.478 0.00 0.00 31.34 3.16
3437 6570 5.473796 TTCAAGTCCTGTTGTAAAACGAC 57.526 39.130 0.00 0.00 33.08 4.34
3456 6589 9.855021 CTAGTTTGTTCTTTCCTTTTTCTTTCA 57.145 29.630 0.00 0.00 0.00 2.69
3457 6590 9.856488 ACTAGTTTGTTCTTTCCTTTTTCTTTC 57.144 29.630 0.00 0.00 0.00 2.62
3484 6618 5.394993 GCGGTCCTCTTTGTAATAACTAGGT 60.395 44.000 0.00 0.00 0.00 3.08
3507 6641 3.900941 ACGAGTTTCAATGACATTTGGC 58.099 40.909 0.00 0.00 0.00 4.52
3528 6662 1.006813 ACATGCCAGGGACCCAATTA 58.993 50.000 14.60 0.00 0.00 1.40
3573 6707 2.498167 GTGTCATGCTTGGTGAAGACT 58.502 47.619 0.00 0.00 0.00 3.24
3624 6758 0.179215 CGTCTTGAAGTTCATGGCGC 60.179 55.000 26.23 0.00 41.40 6.53
3636 6770 2.826128 AGGCACTACATCTTCGTCTTGA 59.174 45.455 0.00 0.00 36.02 3.02
3659 6793 0.326522 TCCCAGCCAAGAGCCAGATA 60.327 55.000 0.00 0.00 45.47 1.98
3691 6825 7.773489 TTAAATCTGTTGGATGAATGGTGAA 57.227 32.000 0.00 0.00 34.45 3.18
3701 6835 5.132502 TCATCGCCATTAAATCTGTTGGAT 58.867 37.500 0.00 0.00 35.97 3.41
3729 6863 0.958382 GCCCAGTGTTGCGGTCAATA 60.958 55.000 0.00 0.00 34.29 1.90
3740 6874 1.227853 GGACTTTGACGCCCAGTGT 60.228 57.895 0.00 0.00 0.00 3.55
3743 6877 0.035458 AGAAGGACTTTGACGCCCAG 59.965 55.000 0.00 0.00 0.00 4.45
3750 6884 2.298163 GGTGACCGTAGAAGGACTTTGA 59.702 50.000 0.00 0.00 34.73 2.69
3769 6903 5.108187 AGTTCATGCTCATCACTAATGGT 57.892 39.130 0.00 0.00 35.94 3.55
3774 6908 4.652881 AGATGGAGTTCATGCTCATCACTA 59.347 41.667 0.00 0.00 35.97 2.74
3775 6909 3.455177 AGATGGAGTTCATGCTCATCACT 59.545 43.478 0.00 0.00 35.97 3.41
3786 6920 5.970289 AGGTGGAGATATAGATGGAGTTCA 58.030 41.667 0.00 0.00 0.00 3.18
3787 6921 6.926630 AAGGTGGAGATATAGATGGAGTTC 57.073 41.667 0.00 0.00 0.00 3.01
3799 6933 3.060479 AGCATGGGTAAGGTGGAGATA 57.940 47.619 0.00 0.00 0.00 1.98
3811 6945 0.036010 CGTGAAGGAGAAGCATGGGT 60.036 55.000 0.00 0.00 0.00 4.51
3875 7010 3.565764 AGCTTGCATGGCTACTTGATA 57.434 42.857 12.13 0.00 38.36 2.15
3880 7015 2.158900 ACGATAAGCTTGCATGGCTACT 60.159 45.455 9.86 5.84 39.30 2.57
3882 7017 2.483876 GACGATAAGCTTGCATGGCTA 58.516 47.619 9.86 5.01 39.30 3.93
3883 7018 1.303309 GACGATAAGCTTGCATGGCT 58.697 50.000 9.86 8.61 42.31 4.75
3912 7048 2.012237 CATGTGAGGAGTGCATCGC 58.988 57.895 0.00 0.00 35.98 4.58
3926 7062 1.842562 AGTTGGGAGCTAGATGCATGT 59.157 47.619 2.46 1.37 45.94 3.21
3988 7124 1.154093 GTCGTCGCCGTGATTGAGA 60.154 57.895 0.00 0.00 35.01 3.27
4026 7162 1.697082 TACCCCTGTGGCGTTTGACA 61.697 55.000 0.00 0.00 37.83 3.58
4028 7164 1.373435 CTACCCCTGTGGCGTTTGA 59.627 57.895 0.00 0.00 37.83 2.69
4042 7178 1.341383 TGGTCTAGGTTCCGTCCTACC 60.341 57.143 0.00 0.00 38.86 3.18
4044 7180 1.637553 ACTGGTCTAGGTTCCGTCCTA 59.362 52.381 0.00 0.00 38.86 2.94
4120 7257 2.326428 GACCCGATCCCTAATCTTCCA 58.674 52.381 0.00 0.00 31.68 3.53
4141 7278 5.723887 AGAGAGAGAGAGAGAGAGAGTTCTT 59.276 44.000 0.00 0.00 32.53 2.52
4146 7283 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4148 7285 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4149 7286 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4150 7287 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4151 7288 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4152 7289 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4153 7290 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4154 7291 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4155 7292 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.