Multiple sequence alignment - TraesCS2B01G396000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G396000 chr2B 100.000 4368 0 0 1 4368 562216195 562220562 0.000000e+00 8067.0
1 TraesCS2B01G396000 chr2D 91.873 3876 179 56 1 3799 479178038 479181854 0.000000e+00 5288.0
2 TraesCS2B01G396000 chr2D 90.141 71 4 3 247 315 64100325 64100256 6.020000e-14 89.8
3 TraesCS2B01G396000 chr2A 92.082 1604 75 14 317 1894 621919748 621921325 0.000000e+00 2211.0
4 TraesCS2B01G396000 chr2A 90.685 1095 81 11 3274 4355 621922960 621924046 0.000000e+00 1437.0
5 TraesCS2B01G396000 chr2A 95.770 851 29 5 2378 3221 621921794 621922644 0.000000e+00 1365.0
6 TraesCS2B01G396000 chr2A 96.606 442 9 4 1900 2335 621921358 621921799 0.000000e+00 728.0
7 TraesCS2B01G396000 chr2A 98.305 59 0 1 1 58 621911197 621911255 7.730000e-18 102.0
8 TraesCS2B01G396000 chr2A 98.305 59 0 1 1 58 621913981 621914039 7.730000e-18 102.0
9 TraesCS2B01G396000 chr2A 98.214 56 0 1 1 55 621908404 621908459 3.600000e-16 97.1
10 TraesCS2B01G396000 chr2A 96.610 59 1 1 1 58 621908909 621908967 3.600000e-16 97.1
11 TraesCS2B01G396000 chr2A 96.610 59 1 1 1 58 621916006 621916064 3.600000e-16 97.1
12 TraesCS2B01G396000 chr2A 96.610 59 1 1 1 58 621919039 621919097 3.600000e-16 97.1
13 TraesCS2B01G396000 chr2A 96.552 58 1 1 1 57 621910185 621910242 1.290000e-15 95.3
14 TraesCS2B01G396000 chr2A 94.915 59 2 1 1 58 621908151 621908209 1.670000e-14 91.6
15 TraesCS2B01G396000 chr2A 86.842 76 7 3 247 320 698990503 698990429 1.010000e-11 82.4
16 TraesCS2B01G396000 chr4D 88.147 464 46 4 1205 1668 441900908 441901362 1.070000e-150 544.0
17 TraesCS2B01G396000 chr4D 90.667 375 29 5 2380 2752 441901419 441901789 1.090000e-135 494.0
18 TraesCS2B01G396000 chr4D 87.550 249 31 0 2912 3160 441901786 441902034 5.530000e-74 289.0
19 TraesCS2B01G396000 chr4D 88.732 71 5 3 247 315 73244461 73244392 2.800000e-12 84.2
20 TraesCS2B01G396000 chr4A 87.069 464 51 5 1205 1668 25497771 25497317 2.330000e-142 516.0
21 TraesCS2B01G396000 chr4A 90.080 373 37 0 2380 2752 25497258 25496886 6.570000e-133 484.0
22 TraesCS2B01G396000 chr4A 86.853 251 29 3 2912 3160 25496889 25496641 1.200000e-70 278.0
23 TraesCS2B01G396000 chr4A 86.364 154 19 2 58 211 122623935 122623784 2.700000e-37 167.0
24 TraesCS2B01G396000 chr4A 90.909 66 4 2 247 311 238539761 238539697 2.160000e-13 87.9
25 TraesCS2B01G396000 chr4B 86.638 464 53 5 1205 1668 548766813 548767267 5.040000e-139 505.0
26 TraesCS2B01G396000 chr4B 90.885 373 31 1 2380 2752 548767324 548767693 8.440000e-137 497.0
27 TraesCS2B01G396000 chr4B 89.333 375 31 6 1297 1671 659689552 659689187 3.080000e-126 462.0
28 TraesCS2B01G396000 chr4B 86.553 409 44 7 1271 1671 660089973 660090378 1.440000e-119 440.0
29 TraesCS2B01G396000 chr4B 85.146 377 48 7 2382 2757 659689157 659688788 3.190000e-101 379.0
30 TraesCS2B01G396000 chr4B 86.571 350 36 3 2411 2759 660090484 660090823 4.120000e-100 375.0
31 TraesCS2B01G396000 chr4B 87.149 249 32 0 2912 3160 548767690 548767938 2.570000e-72 283.0
32 TraesCS2B01G396000 chr4B 82.581 155 25 2 58 211 68130717 68130870 7.620000e-28 135.0
33 TraesCS2B01G396000 chr5A 82.157 510 76 11 1168 1665 698888608 698889114 1.450000e-114 424.0
34 TraesCS2B01G396000 chr5A 88.066 243 29 0 2900 3142 698889653 698889895 5.530000e-74 289.0
35 TraesCS2B01G396000 chr5A 86.822 258 28 4 2889 3142 698896114 698896369 2.570000e-72 283.0
36 TraesCS2B01G396000 chr5A 88.742 151 17 0 1467 1617 698820530 698820680 7.460000e-43 185.0
37 TraesCS2B01G396000 chr6B 81.871 342 51 8 2414 2754 468010423 468010092 1.200000e-70 278.0
38 TraesCS2B01G396000 chr6D 81.579 342 52 8 2414 2754 302249725 302249394 5.570000e-69 272.0
39 TraesCS2B01G396000 chr6D 90.769 65 4 2 248 311 261280484 261280421 7.780000e-13 86.1
40 TraesCS2B01G396000 chr7D 85.065 154 23 0 58 211 378235973 378236126 1.630000e-34 158.0
41 TraesCS2B01G396000 chr3A 86.395 147 17 3 58 202 27476370 27476515 1.630000e-34 158.0
42 TraesCS2B01G396000 chr3A 93.548 62 3 1 247 307 155062265 155062326 1.670000e-14 91.6
43 TraesCS2B01G396000 chr3A 88.732 71 5 3 247 315 385083522 385083453 2.800000e-12 84.2
44 TraesCS2B01G396000 chr5D 84.416 154 24 0 58 211 439492193 439492346 7.570000e-33 152.0
45 TraesCS2B01G396000 chr3D 85.235 149 21 1 64 211 111983593 111983445 7.570000e-33 152.0
46 TraesCS2B01G396000 chr3D 92.424 66 3 2 247 311 568843517 568843453 4.650000e-15 93.5
47 TraesCS2B01G396000 chr1A 85.417 144 20 1 64 206 580574118 580573975 9.790000e-32 148.0
48 TraesCS2B01G396000 chr1B 83.117 154 26 0 58 211 401989942 401990095 1.640000e-29 141.0
49 TraesCS2B01G396000 chr7A 90.000 60 6 0 2900 2959 135533711 135533770 1.300000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G396000 chr2B 562216195 562220562 4367 False 8067.000000 8067 100.000000 1 4368 1 chr2B.!!$F1 4367
1 TraesCS2B01G396000 chr2D 479178038 479181854 3816 False 5288.000000 5288 91.873000 1 3799 1 chr2D.!!$F1 3798
2 TraesCS2B01G396000 chr2A 621908151 621924046 15895 False 543.358333 2211 95.938667 1 4355 12 chr2A.!!$F1 4354
3 TraesCS2B01G396000 chr4D 441900908 441902034 1126 False 442.333333 544 88.788000 1205 3160 3 chr4D.!!$F1 1955
4 TraesCS2B01G396000 chr4A 25496641 25497771 1130 True 426.000000 516 88.000667 1205 3160 3 chr4A.!!$R3 1955
5 TraesCS2B01G396000 chr4B 548766813 548767938 1125 False 428.333333 505 88.224000 1205 3160 3 chr4B.!!$F2 1955
6 TraesCS2B01G396000 chr4B 659688788 659689552 764 True 420.500000 462 87.239500 1297 2757 2 chr4B.!!$R1 1460
7 TraesCS2B01G396000 chr4B 660089973 660090823 850 False 407.500000 440 86.562000 1271 2759 2 chr4B.!!$F3 1488
8 TraesCS2B01G396000 chr5A 698888608 698889895 1287 False 356.500000 424 85.111500 1168 3142 2 chr5A.!!$F3 1974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
500 11792 0.033894 TGAGTCATGCATGCACCCAT 60.034 50.0 25.37 9.94 0.00 4.00 F
1051 12368 0.462047 CGGCCCAGTGGTAGCTAAAG 60.462 60.0 8.74 0.00 0.00 1.85 F
1052 12369 0.748367 GGCCCAGTGGTAGCTAAAGC 60.748 60.0 8.74 1.05 42.49 3.51 F
2360 13771 0.179134 GTCGTAGCAGGGTAGCAGTG 60.179 60.0 0.00 0.00 36.85 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2340 13749 0.323542 ACTGCTACCCTGCTACGACT 60.324 55.0 0.00 0.0 0.0 4.18 R
2347 13758 0.613777 AACTACCACTGCTACCCTGC 59.386 55.0 0.00 0.0 0.0 4.85 R
3046 14476 0.671472 AAGGTAAACGGCCTGTACGC 60.671 55.0 0.00 0.0 36.3 4.42 R
4134 15839 0.253044 ACACACGGCTAGCAATGGAT 59.747 50.0 18.24 3.7 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 9282 1.066430 TGCTCGGACCTAAACATGGAC 60.066 52.381 0.00 0.00 0.00 4.02
88 9295 4.605640 AACATGGACCAAAAATGGACTG 57.394 40.909 0.00 0.00 0.00 3.51
95 9302 5.070981 TGGACCAAAAATGGACTGCAATTTA 59.929 36.000 1.10 0.00 0.00 1.40
123 9330 2.304761 TGAGCCGGGTCTTAAACTCAAT 59.695 45.455 31.97 0.00 31.60 2.57
132 9339 5.880887 GGGTCTTAAACTCAATACCTCTTGG 59.119 44.000 0.00 0.00 39.83 3.61
135 9342 6.655425 GTCTTAAACTCAATACCTCTTGGCTT 59.345 38.462 0.00 0.00 36.63 4.35
154 11170 4.023365 GGCTTCGATACCACGTAGAAGTAT 60.023 45.833 0.00 0.00 40.10 2.12
166 11182 3.432933 CGTAGAAGTATCCGGTCTAGCTC 59.567 52.174 0.00 0.00 0.00 4.09
173 11189 1.123077 TCCGGTCTAGCTCATGCAAT 58.877 50.000 0.00 0.00 42.74 3.56
221 11246 4.625742 ACTATGCAATACACGTCAACACTC 59.374 41.667 0.00 0.00 0.00 3.51
225 11250 3.363970 GCAATACACGTCAACACTCCTTG 60.364 47.826 0.00 0.00 0.00 3.61
231 11256 1.583054 GTCAACACTCCTTGCGTTCT 58.417 50.000 0.00 0.00 0.00 3.01
243 11268 8.612619 CACTCCTTGCGTTCTATAATATTTGTT 58.387 33.333 0.00 0.00 0.00 2.83
249 11274 7.837505 TGCGTTCTATAATATTTGTTGAGTCG 58.162 34.615 0.00 1.78 0.00 4.18
284 11565 7.830217 TCAAATTTGAACTAAAATCACGACG 57.170 32.000 18.45 0.00 33.55 5.12
297 11578 6.823678 AAATCACGACGAGTATTATGGAAC 57.176 37.500 0.00 0.00 0.00 3.62
319 11602 8.542926 GGAACAGGGGAGTAACTAATAAGTAAA 58.457 37.037 0.00 0.00 33.75 2.01
500 11792 0.033894 TGAGTCATGCATGCACCCAT 60.034 50.000 25.37 9.94 0.00 4.00
563 11855 2.029623 CCATGGAGAAGAAGGCCAATG 58.970 52.381 5.56 0.00 34.95 2.82
567 11859 2.158475 TGGAGAAGAAGGCCAATGTTGT 60.158 45.455 5.01 0.00 0.00 3.32
577 11869 1.688793 CCAATGTTGTGTGATGTGCG 58.311 50.000 0.00 0.00 0.00 5.34
579 11871 2.045586 CAATGTTGTGTGATGTGCGTG 58.954 47.619 0.00 0.00 0.00 5.34
708 12005 3.507162 TTGAATGGAGCCTCAAGTTGA 57.493 42.857 5.25 5.25 0.00 3.18
724 12021 0.944386 TTGAGCGGTCAAAGACAAGC 59.056 50.000 26.54 8.21 39.85 4.01
762 12059 1.369692 CCCCACACAAGTGTCGCTA 59.630 57.895 2.28 0.00 44.39 4.26
775 12072 2.022195 TGTCGCTAGGTCTTAATCGCT 58.978 47.619 0.00 0.00 0.00 4.93
776 12073 3.003068 GTGTCGCTAGGTCTTAATCGCTA 59.997 47.826 0.00 0.00 0.00 4.26
777 12074 3.003068 TGTCGCTAGGTCTTAATCGCTAC 59.997 47.826 0.00 0.00 0.00 3.58
778 12075 2.222678 TCGCTAGGTCTTAATCGCTACG 59.777 50.000 0.00 0.00 0.00 3.51
779 12076 2.222678 CGCTAGGTCTTAATCGCTACGA 59.777 50.000 0.00 0.00 41.13 3.43
780 12077 3.303593 CGCTAGGTCTTAATCGCTACGAA 60.304 47.826 0.00 0.00 39.99 3.85
781 12078 4.604976 GCTAGGTCTTAATCGCTACGAAA 58.395 43.478 0.00 0.00 39.99 3.46
782 12079 4.676018 GCTAGGTCTTAATCGCTACGAAAG 59.324 45.833 0.00 0.00 39.99 2.62
783 12080 4.978083 AGGTCTTAATCGCTACGAAAGA 57.022 40.909 0.00 0.00 39.99 2.52
845 12148 1.416050 CGTCCGTAAGTAAAGGCGGC 61.416 60.000 0.00 0.00 43.45 6.53
846 12149 1.086067 GTCCGTAAGTAAAGGCGGCC 61.086 60.000 12.11 12.11 43.45 6.13
847 12150 2.169146 CCGTAAGTAAAGGCGGCCG 61.169 63.158 24.05 24.05 37.69 6.13
848 12151 2.805807 CGTAAGTAAAGGCGGCCGC 61.806 63.158 41.63 41.63 41.06 6.53
849 12152 2.509786 TAAGTAAAGGCGGCCGCG 60.510 61.111 41.05 11.49 43.06 6.46
850 12153 3.004326 TAAGTAAAGGCGGCCGCGA 62.004 57.895 41.05 24.56 43.06 5.87
851 12154 2.894240 TAAGTAAAGGCGGCCGCGAG 62.894 60.000 41.05 7.65 43.06 5.03
985 12297 2.614134 ATATAGGCCTCTCGCTTCCT 57.386 50.000 9.68 0.00 37.74 3.36
1007 12319 0.801067 ATCTTTCGTAGCACCGCGAC 60.801 55.000 8.23 0.00 36.82 5.19
1049 12366 3.026431 GCGGCCCAGTGGTAGCTAA 62.026 63.158 8.74 0.00 34.66 3.09
1050 12367 1.600107 CGGCCCAGTGGTAGCTAAA 59.400 57.895 8.74 0.00 0.00 1.85
1051 12368 0.462047 CGGCCCAGTGGTAGCTAAAG 60.462 60.000 8.74 0.00 0.00 1.85
1052 12369 0.748367 GGCCCAGTGGTAGCTAAAGC 60.748 60.000 8.74 1.05 42.49 3.51
1110 12427 2.033448 GCCGGTTGGTCCATCACA 59.967 61.111 1.90 0.00 37.67 3.58
1111 12428 2.040544 GCCGGTTGGTCCATCACAG 61.041 63.158 1.90 0.00 37.67 3.66
1703 13058 2.295349 CCCATATGCATGCCTGTTCTTC 59.705 50.000 16.68 0.00 0.00 2.87
1749 13107 6.833839 ACATTTAGCGAACGTGCTTAATTAA 58.166 32.000 5.64 0.00 44.46 1.40
1949 13343 1.200020 GGCTTTGTTTGGGTCGATGAG 59.800 52.381 0.00 0.00 0.00 2.90
2234 13629 8.420374 GCATGAGCACTAGTTTTAATAGTACA 57.580 34.615 0.00 0.00 41.58 2.90
2235 13630 9.046296 GCATGAGCACTAGTTTTAATAGTACAT 57.954 33.333 0.00 0.00 41.58 2.29
2238 13633 9.582431 TGAGCACTAGTTTTAATAGTACATGAC 57.418 33.333 0.00 0.00 32.24 3.06
2241 13636 9.326413 GCACTAGTTTTAATAGTACATGACCAT 57.674 33.333 0.00 0.00 32.24 3.55
2287 13696 3.005155 GTGTTTACCACGGTCACTAGTCT 59.995 47.826 0.00 0.00 33.61 3.24
2339 13748 7.438757 TCGTGTGCAGTAGTTTTATTGACTTTA 59.561 33.333 0.00 0.00 0.00 1.85
2340 13749 8.065407 CGTGTGCAGTAGTTTTATTGACTTTAA 58.935 33.333 0.00 0.00 0.00 1.52
2357 13768 2.133281 TAAGTCGTAGCAGGGTAGCA 57.867 50.000 0.00 0.00 36.85 3.49
2359 13770 0.323542 AGTCGTAGCAGGGTAGCAGT 60.324 55.000 0.00 0.00 36.85 4.40
2360 13771 0.179134 GTCGTAGCAGGGTAGCAGTG 60.179 60.000 0.00 0.00 36.85 3.66
2361 13772 1.141881 CGTAGCAGGGTAGCAGTGG 59.858 63.158 0.00 0.00 36.85 4.00
2362 13773 1.605058 CGTAGCAGGGTAGCAGTGGT 61.605 60.000 0.00 0.00 36.85 4.16
2363 13774 1.481871 GTAGCAGGGTAGCAGTGGTA 58.518 55.000 0.00 0.00 36.85 3.25
2364 13775 1.409427 GTAGCAGGGTAGCAGTGGTAG 59.591 57.143 1.37 0.00 36.85 3.18
2365 13776 0.252284 AGCAGGGTAGCAGTGGTAGT 60.252 55.000 1.37 0.00 36.85 2.73
2366 13777 0.613777 GCAGGGTAGCAGTGGTAGTT 59.386 55.000 1.37 0.00 0.00 2.24
2367 13778 1.003233 GCAGGGTAGCAGTGGTAGTTT 59.997 52.381 1.37 0.00 0.00 2.66
2368 13779 2.699954 CAGGGTAGCAGTGGTAGTTTG 58.300 52.381 1.37 0.00 0.00 2.93
2369 13780 2.038557 CAGGGTAGCAGTGGTAGTTTGT 59.961 50.000 1.37 0.00 0.00 2.83
2370 13781 3.259876 CAGGGTAGCAGTGGTAGTTTGTA 59.740 47.826 1.37 0.00 0.00 2.41
2371 13782 3.260128 AGGGTAGCAGTGGTAGTTTGTAC 59.740 47.826 1.37 0.00 0.00 2.90
2372 13783 3.260128 GGGTAGCAGTGGTAGTTTGTACT 59.740 47.826 1.37 0.00 38.44 2.73
2373 13784 4.492611 GGTAGCAGTGGTAGTTTGTACTC 58.507 47.826 1.37 0.00 35.78 2.59
2374 13785 3.679824 AGCAGTGGTAGTTTGTACTCC 57.320 47.619 0.00 0.00 35.78 3.85
2375 13786 2.969950 AGCAGTGGTAGTTTGTACTCCA 59.030 45.455 0.00 0.00 35.78 3.86
2648 14068 2.183679 GACTTCCTCACCATCCTCTGT 58.816 52.381 0.00 0.00 0.00 3.41
2850 14278 2.863853 CGTCGCATCAGATGGCACG 61.864 63.158 12.54 7.46 0.00 5.34
2961 14391 1.529244 GGAGCACAAAGTGGTGGCT 60.529 57.895 6.57 0.00 44.55 4.75
3025 14455 3.792047 CGTACGACTCGCCGGTCA 61.792 66.667 10.44 0.00 36.12 4.02
3170 14600 1.464023 CGTTGACGGCATGAATCACAC 60.464 52.381 0.00 0.00 35.37 3.82
3188 14618 1.798813 CACCCTCTGTTCTTAACACGC 59.201 52.381 0.00 0.00 36.25 5.34
3190 14620 2.069273 CCCTCTGTTCTTAACACGCAG 58.931 52.381 0.00 0.00 36.25 5.18
3403 15103 1.137086 GTGATACGTCTGCCCATCTGT 59.863 52.381 0.00 0.00 0.00 3.41
3422 15122 2.826725 TGTTCCCGTTTGTTTGTTCCTT 59.173 40.909 0.00 0.00 0.00 3.36
3436 15136 6.015010 TGTTTGTTCCTTGTTCCTTCTTTTCA 60.015 34.615 0.00 0.00 0.00 2.69
3443 15143 7.287061 TCCTTGTTCCTTCTTTTCATCTTGTA 58.713 34.615 0.00 0.00 0.00 2.41
3592 15293 8.871686 AAAACAGTTAGACTTAAAAAGCCATG 57.128 30.769 0.00 0.00 0.00 3.66
3604 15305 8.397148 ACTTAAAAAGCCATGTTTTCATTTGTG 58.603 29.630 0.00 0.00 38.64 3.33
3641 15342 1.077501 ATGGTCATGGGCAACGGAG 60.078 57.895 0.00 0.00 37.60 4.63
3646 15347 1.134220 GTCATGGGCAACGGAGGATTA 60.134 52.381 0.00 0.00 37.60 1.75
3675 15377 6.386654 TCCTTCGAATTTCAAAGGCATAAAC 58.613 36.000 10.72 0.00 39.55 2.01
3799 15501 6.240894 TCATGGCCATTCTGTTAGGAATATC 58.759 40.000 17.92 0.00 34.59 1.63
3804 15506 8.448008 TGGCCATTCTGTTAGGAATATCTTTAT 58.552 33.333 0.00 0.00 34.59 1.40
3806 15508 9.507329 GCCATTCTGTTAGGAATATCTTTATCA 57.493 33.333 0.00 0.00 34.59 2.15
3827 15529 3.369175 AGACATGCTGATCCACTACTCA 58.631 45.455 0.00 0.00 0.00 3.41
3841 15543 6.115446 TCCACTACTCATTGATGGAATGTTC 58.885 40.000 4.57 0.00 42.06 3.18
3855 15557 6.211587 TGGAATGTTCTGCATTTCAATAGG 57.788 37.500 0.00 0.00 46.91 2.57
3862 15567 8.579850 TGTTCTGCATTTCAATAGGAAGTATT 57.420 30.769 0.00 0.00 36.72 1.89
3909 15614 3.290948 TTGGCCATTACCCATACACTC 57.709 47.619 6.09 0.00 31.26 3.51
3910 15615 2.200955 TGGCCATTACCCATACACTCA 58.799 47.619 0.00 0.00 0.00 3.41
3911 15616 2.782925 TGGCCATTACCCATACACTCAT 59.217 45.455 0.00 0.00 0.00 2.90
3927 15632 4.247267 ACTCATGGTGAAGCAACATTTG 57.753 40.909 0.00 0.00 38.83 2.32
3930 15635 5.119931 TCATGGTGAAGCAACATTTGTAC 57.880 39.130 0.00 0.00 38.83 2.90
3932 15637 4.991153 TGGTGAAGCAACATTTGTACAA 57.009 36.364 3.59 3.59 0.00 2.41
3935 15640 5.215160 GGTGAAGCAACATTTGTACAAGAG 58.785 41.667 8.56 7.98 0.00 2.85
3942 15647 6.435277 AGCAACATTTGTACAAGAGATGGATT 59.565 34.615 18.42 6.35 0.00 3.01
3945 15650 5.126061 ACATTTGTACAAGAGATGGATTGCC 59.874 40.000 18.42 0.00 0.00 4.52
3953 15658 3.474600 AGAGATGGATTGCCGATTCTTG 58.525 45.455 0.00 0.00 36.79 3.02
3956 15661 3.629398 AGATGGATTGCCGATTCTTGTTC 59.371 43.478 0.00 0.00 36.79 3.18
3957 15662 3.071874 TGGATTGCCGATTCTTGTTCT 57.928 42.857 0.00 0.00 36.79 3.01
3958 15663 3.009723 TGGATTGCCGATTCTTGTTCTC 58.990 45.455 0.00 0.00 36.79 2.87
3995 15700 3.057596 CGAGAAGCCACAATTTAGCCAAA 60.058 43.478 0.00 0.00 0.00 3.28
3996 15701 4.558496 CGAGAAGCCACAATTTAGCCAAAA 60.558 41.667 0.00 0.00 0.00 2.44
3997 15702 5.289083 AGAAGCCACAATTTAGCCAAAAA 57.711 34.783 0.00 0.00 0.00 1.94
4040 15745 3.681129 TGGCCAACCAAAGGGAGA 58.319 55.556 0.61 0.00 45.37 3.71
4044 15749 1.344438 GGCCAACCAAAGGGAGAAAAG 59.656 52.381 0.00 0.00 38.05 2.27
4046 15751 2.224042 GCCAACCAAAGGGAGAAAAGTG 60.224 50.000 0.00 0.00 38.05 3.16
4059 15764 4.022849 GGAGAAAAGTGACCTTCAATGGTG 60.023 45.833 0.00 0.00 41.00 4.17
4075 15780 2.596346 TGGTGCACATGTCTTCCAAAT 58.404 42.857 20.43 0.00 0.00 2.32
4086 15791 9.695526 CACATGTCTTCCAAATAATTCTTTTCA 57.304 29.630 0.00 0.00 0.00 2.69
4095 15800 9.308000 TCCAAATAATTCTTTTCATAGTGGTGT 57.692 29.630 0.00 0.00 0.00 4.16
4099 15804 5.633830 ATTCTTTTCATAGTGGTGTGCAG 57.366 39.130 0.00 0.00 0.00 4.41
4101 15806 2.198827 TTTCATAGTGGTGTGCAGGG 57.801 50.000 0.00 0.00 0.00 4.45
4104 15809 0.745845 CATAGTGGTGTGCAGGGCTC 60.746 60.000 0.00 0.00 0.00 4.70
4113 15818 0.686789 GTGCAGGGCTCCCAAATTTT 59.313 50.000 7.82 0.00 38.92 1.82
4159 15864 4.342772 CATTGCTAGCCGTGTGTTTTATC 58.657 43.478 13.29 0.00 0.00 1.75
4160 15865 3.046968 TGCTAGCCGTGTGTTTTATCA 57.953 42.857 13.29 0.00 0.00 2.15
4163 15868 3.002348 GCTAGCCGTGTGTTTTATCATCC 59.998 47.826 2.29 0.00 0.00 3.51
4186 15891 8.731275 TCCGTGTCATTGTCAAGATAAATATT 57.269 30.769 0.00 0.00 0.00 1.28
4188 15893 9.864034 CCGTGTCATTGTCAAGATAAATATTAC 57.136 33.333 0.00 0.00 0.00 1.89
4203 15908 2.403252 ATTACGGAGGCTTGTCCAAG 57.597 50.000 2.63 2.63 41.24 3.61
4209 15914 0.390472 GAGGCTTGTCCAAGGAGACG 60.390 60.000 8.97 0.00 39.77 4.18
4220 15925 3.060602 CCAAGGAGACGAACTCAGAAAC 58.939 50.000 13.89 0.36 46.54 2.78
4226 15931 0.462789 ACGAACTCAGAAACGTGGGT 59.537 50.000 0.00 0.00 37.58 4.51
4227 15932 1.137513 CGAACTCAGAAACGTGGGTC 58.862 55.000 0.00 0.00 27.92 4.46
4228 15933 1.537348 CGAACTCAGAAACGTGGGTCA 60.537 52.381 0.00 0.00 27.92 4.02
4229 15934 1.865340 GAACTCAGAAACGTGGGTCAC 59.135 52.381 0.00 0.00 27.92 3.67
4275 15980 9.524496 TTGATATTGAATATCCAAGCATTAGCT 57.476 29.630 19.40 0.00 45.91 3.32
4360 16072 3.774842 AAAAAGGGATCCCATAAGCCA 57.225 42.857 32.69 0.00 38.92 4.75
4361 16073 2.755952 AAAGGGATCCCATAAGCCAC 57.244 50.000 32.69 1.84 38.92 5.01
4362 16074 0.474184 AAGGGATCCCATAAGCCACG 59.526 55.000 32.69 0.00 38.92 4.94
4363 16075 0.399949 AGGGATCCCATAAGCCACGA 60.400 55.000 32.69 0.00 38.92 4.35
4364 16076 0.035458 GGGATCCCATAAGCCACGAG 59.965 60.000 26.95 0.00 35.81 4.18
4365 16077 0.035458 GGATCCCATAAGCCACGAGG 59.965 60.000 0.00 0.00 38.23 4.63
4366 16078 0.759346 GATCCCATAAGCCACGAGGT 59.241 55.000 0.00 0.00 37.19 3.85
4367 16079 0.469917 ATCCCATAAGCCACGAGGTG 59.530 55.000 0.00 0.00 37.19 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 9302 2.746277 GACCCGGCTCACGCAATT 60.746 61.111 0.00 0.00 42.52 2.32
123 9330 2.429610 GTGGTATCGAAGCCAAGAGGTA 59.570 50.000 12.09 0.00 36.41 3.08
132 9339 3.417690 ACTTCTACGTGGTATCGAAGC 57.582 47.619 0.00 0.00 35.66 3.86
135 9342 3.742882 CGGATACTTCTACGTGGTATCGA 59.257 47.826 17.71 0.00 41.29 3.59
154 11170 1.069204 GATTGCATGAGCTAGACCGGA 59.931 52.381 9.46 0.00 42.74 5.14
166 11182 4.095334 TCAGATCGGTCTTTTGATTGCATG 59.905 41.667 0.00 0.00 30.42 4.06
173 11189 6.603599 TCTCTTCTATCAGATCGGTCTTTTGA 59.396 38.462 0.00 0.00 30.42 2.69
221 11246 8.612619 ACTCAACAAATATTATAGAACGCAAGG 58.387 33.333 0.00 0.00 46.39 3.61
225 11250 7.787935 CACGACTCAACAAATATTATAGAACGC 59.212 37.037 0.00 0.00 0.00 4.84
243 11268 8.191446 TCAAATTTGAAATAAAACCACGACTCA 58.809 29.630 18.45 0.00 33.55 3.41
277 11558 4.201980 CCTGTTCCATAATACTCGTCGTGA 60.202 45.833 0.56 0.00 0.00 4.35
284 11565 6.326843 AGTTACTCCCCTGTTCCATAATACTC 59.673 42.308 0.00 0.00 0.00 2.59
319 11602 5.887214 TGCACCACCATATCTAGTGTTAT 57.113 39.130 0.00 0.00 31.88 1.89
500 11792 9.328845 TGTTGATGTACTACTGTATGTATCGTA 57.671 33.333 0.00 0.00 0.00 3.43
531 11823 4.777896 TCTTCTCCATGGCACTTACTTACT 59.222 41.667 6.96 0.00 0.00 2.24
532 11824 5.086104 TCTTCTCCATGGCACTTACTTAC 57.914 43.478 6.96 0.00 0.00 2.34
533 11825 5.338381 CCTTCTTCTCCATGGCACTTACTTA 60.338 44.000 6.96 0.00 0.00 2.24
534 11826 4.566488 CCTTCTTCTCCATGGCACTTACTT 60.566 45.833 6.96 0.00 0.00 2.24
563 11855 0.655208 TGACACGCACATCACACAAC 59.345 50.000 0.00 0.00 0.00 3.32
567 11859 1.946745 TTCTTGACACGCACATCACA 58.053 45.000 0.00 0.00 0.00 3.58
577 11869 5.485662 AGCTACTTGTTGTTTCTTGACAC 57.514 39.130 0.00 0.00 0.00 3.67
579 11871 7.421530 TCATAGCTACTTGTTGTTTCTTGAC 57.578 36.000 0.00 0.00 0.00 3.18
708 12005 1.600916 GGGCTTGTCTTTGACCGCT 60.601 57.895 8.27 0.00 31.75 5.52
762 12059 4.978083 TCTTTCGTAGCGATTAAGACCT 57.022 40.909 0.00 0.00 35.23 3.85
775 12072 3.215151 AGCGATCCTCTGATCTTTCGTA 58.785 45.455 0.00 0.00 44.40 3.43
776 12073 2.028130 AGCGATCCTCTGATCTTTCGT 58.972 47.619 0.00 0.00 44.40 3.85
777 12074 2.660490 GAGCGATCCTCTGATCTTTCG 58.340 52.381 0.00 0.00 44.40 3.46
778 12075 2.292016 TCGAGCGATCCTCTGATCTTTC 59.708 50.000 0.00 0.00 44.40 2.62
779 12076 2.302260 TCGAGCGATCCTCTGATCTTT 58.698 47.619 0.00 0.00 44.40 2.52
780 12077 1.974265 TCGAGCGATCCTCTGATCTT 58.026 50.000 0.00 0.00 44.40 2.40
781 12078 1.974265 TTCGAGCGATCCTCTGATCT 58.026 50.000 0.00 0.00 44.40 2.75
782 12079 2.389998 GTTTCGAGCGATCCTCTGATC 58.610 52.381 0.00 0.00 43.36 2.92
783 12080 1.268794 CGTTTCGAGCGATCCTCTGAT 60.269 52.381 5.69 0.00 38.49 2.90
985 12297 1.268386 CGCGGTGCTACGAAAGATCTA 60.268 52.381 0.00 0.00 35.47 1.98
1007 12319 2.590007 GGCAGTGGCTATGGCGAG 60.590 66.667 9.90 0.00 40.87 5.03
1049 12366 2.028930 ACTCACTTGCTTAGCTACGCTT 60.029 45.455 21.34 5.00 40.44 4.68
1050 12367 1.546476 ACTCACTTGCTTAGCTACGCT 59.454 47.619 21.34 0.39 43.41 5.07
1051 12368 1.656095 CACTCACTTGCTTAGCTACGC 59.344 52.381 14.95 14.95 0.00 4.42
1052 12369 2.663602 CACACTCACTTGCTTAGCTACG 59.336 50.000 5.60 0.00 0.00 3.51
1053 12370 2.413453 GCACACTCACTTGCTTAGCTAC 59.587 50.000 5.60 0.00 35.74 3.58
1054 12371 2.037121 TGCACACTCACTTGCTTAGCTA 59.963 45.455 5.60 0.00 39.62 3.32
1093 12410 2.033448 TGTGATGGACCAACCGGC 59.967 61.111 0.00 0.00 42.61 6.13
1366 12701 3.706373 GCACGCCTTCCTCTCCCA 61.706 66.667 0.00 0.00 0.00 4.37
1626 12961 3.138798 TAGTCGCAGTCCTCCCGC 61.139 66.667 0.00 0.00 0.00 6.13
1703 13058 3.764434 TCTGACAGAGTAAGCAGGGTAAG 59.236 47.826 0.00 0.00 0.00 2.34
1759 13117 9.906660 ATTCTCTATCGACTGAACTGATTAATC 57.093 33.333 8.60 8.60 0.00 1.75
1797 13155 1.343465 TCTTTCGTCCTTGGACTCACC 59.657 52.381 16.60 0.00 39.54 4.02
1887 13251 6.772716 TGACAGGAAAGTTTTGCTTCTAGAAT 59.227 34.615 5.44 0.00 36.67 2.40
1888 13252 6.119536 TGACAGGAAAGTTTTGCTTCTAGAA 58.880 36.000 4.81 4.81 36.67 2.10
1890 13254 6.038714 AGTTGACAGGAAAGTTTTGCTTCTAG 59.961 38.462 0.00 0.00 36.67 2.43
1891 13255 5.885912 AGTTGACAGGAAAGTTTTGCTTCTA 59.114 36.000 0.00 0.00 36.67 2.10
1892 13256 4.706962 AGTTGACAGGAAAGTTTTGCTTCT 59.293 37.500 0.00 0.00 36.67 2.85
1893 13257 4.998788 AGTTGACAGGAAAGTTTTGCTTC 58.001 39.130 0.00 0.30 36.67 3.86
1894 13258 5.652452 ACTAGTTGACAGGAAAGTTTTGCTT 59.348 36.000 0.00 0.00 36.67 3.91
1895 13259 5.193679 ACTAGTTGACAGGAAAGTTTTGCT 58.806 37.500 0.00 0.00 39.56 3.91
1949 13343 1.522676 CCGCACACATGATATCGTCAC 59.477 52.381 0.00 0.00 40.28 3.67
1976 13370 2.037053 CCATGTTTCGTGGGCACAA 58.963 52.632 0.00 0.00 36.92 3.33
2233 13628 7.716560 TGTAACCAGATTAGATTCATGGTCATG 59.283 37.037 4.67 4.67 43.36 3.07
2234 13629 7.805163 TGTAACCAGATTAGATTCATGGTCAT 58.195 34.615 0.00 0.00 43.36 3.06
2235 13630 7.194112 TGTAACCAGATTAGATTCATGGTCA 57.806 36.000 0.00 0.00 43.36 4.02
2236 13631 9.209175 GTATGTAACCAGATTAGATTCATGGTC 57.791 37.037 0.00 0.00 43.36 4.02
2238 13633 7.872993 ACGTATGTAACCAGATTAGATTCATGG 59.127 37.037 0.00 0.00 37.07 3.66
2241 13636 7.704899 CACACGTATGTAACCAGATTAGATTCA 59.295 37.037 0.00 0.00 36.72 2.57
2242 13637 7.705325 ACACACGTATGTAACCAGATTAGATTC 59.295 37.037 0.00 0.00 36.72 2.52
2287 13696 4.501071 GTGGTAAAATTCTCGCCTAGTGA 58.499 43.478 0.00 0.00 0.00 3.41
2339 13748 0.818296 CTGCTACCCTGCTACGACTT 59.182 55.000 0.00 0.00 0.00 3.01
2340 13749 0.323542 ACTGCTACCCTGCTACGACT 60.324 55.000 0.00 0.00 0.00 4.18
2347 13758 0.613777 AACTACCACTGCTACCCTGC 59.386 55.000 0.00 0.00 0.00 4.85
2351 13762 4.492611 GAGTACAAACTACCACTGCTACC 58.507 47.826 0.00 0.00 35.56 3.18
2369 13780 3.939592 CGTCAGTCATCAGTACTGGAGTA 59.060 47.826 22.48 3.63 43.69 2.59
2370 13781 2.750166 CGTCAGTCATCAGTACTGGAGT 59.250 50.000 22.48 12.54 43.69 3.85
2371 13782 3.010420 TCGTCAGTCATCAGTACTGGAG 58.990 50.000 22.48 14.84 43.69 3.86
2372 13783 3.010420 CTCGTCAGTCATCAGTACTGGA 58.990 50.000 22.48 10.20 43.69 3.86
2373 13784 2.478709 GCTCGTCAGTCATCAGTACTGG 60.479 54.545 22.48 7.88 43.69 4.00
2374 13785 2.162408 TGCTCGTCAGTCATCAGTACTG 59.838 50.000 17.17 17.17 44.66 2.74
2375 13786 2.437413 TGCTCGTCAGTCATCAGTACT 58.563 47.619 0.00 0.00 0.00 2.73
2648 14068 4.715130 CCCCCGACCTGGTCCTGA 62.715 72.222 20.68 0.00 35.15 3.86
2961 14391 4.090588 CGCTCCGCCTTGGGGTTA 62.091 66.667 3.09 0.00 42.03 2.85
3046 14476 0.671472 AAGGTAAACGGCCTGTACGC 60.671 55.000 0.00 0.00 36.30 4.42
3170 14600 2.069273 CTGCGTGTTAAGAACAGAGGG 58.931 52.381 0.00 0.00 43.10 4.30
3188 14618 4.993584 AGATTTGAGTACTTCACAGCACTG 59.006 41.667 0.00 0.00 34.94 3.66
3190 14620 4.991056 TGAGATTTGAGTACTTCACAGCAC 59.009 41.667 0.00 0.00 34.94 4.40
3191 14621 4.991056 GTGAGATTTGAGTACTTCACAGCA 59.009 41.667 15.17 0.00 34.94 4.41
3193 14623 4.623167 CGGTGAGATTTGAGTACTTCACAG 59.377 45.833 19.58 14.12 34.94 3.66
3194 14624 4.038763 ACGGTGAGATTTGAGTACTTCACA 59.961 41.667 19.58 6.83 34.94 3.58
3235 14671 7.611855 GGGAAATTATCTCCGATTCCATACAAT 59.388 37.037 5.34 0.00 41.03 2.71
3236 14672 6.940298 GGGAAATTATCTCCGATTCCATACAA 59.060 38.462 5.34 0.00 41.03 2.41
3237 14673 6.272324 AGGGAAATTATCTCCGATTCCATACA 59.728 38.462 5.34 0.00 41.03 2.29
3403 15103 2.826725 ACAAGGAACAAACAAACGGGAA 59.173 40.909 0.00 0.00 0.00 3.97
3422 15122 6.348458 CGCATACAAGATGAAAAGAAGGAACA 60.348 38.462 0.00 0.00 0.00 3.18
3436 15136 4.132336 TCCTCGTAGTACGCATACAAGAT 58.868 43.478 17.90 0.00 42.21 2.40
3443 15143 3.248266 GTTTGTTCCTCGTAGTACGCAT 58.752 45.455 17.90 0.00 42.21 4.73
3586 15287 4.669206 TCACACAAATGAAAACATGGCT 57.331 36.364 0.00 0.00 0.00 4.75
3588 15289 5.234757 CCAGTTCACACAAATGAAAACATGG 59.765 40.000 0.00 0.00 40.22 3.66
3592 15293 4.504097 GCTCCAGTTCACACAAATGAAAAC 59.496 41.667 0.00 0.00 40.22 2.43
3604 15305 2.970974 GCGCCAAGCTCCAGTTCAC 61.971 63.158 0.00 0.00 44.04 3.18
3675 15377 5.047847 GTCAATGAATGGATGAGGCAAATG 58.952 41.667 0.00 0.00 0.00 2.32
3806 15508 3.369175 TGAGTAGTGGATCAGCATGTCT 58.631 45.455 0.00 0.00 37.40 3.41
3841 15543 8.341173 GTCTGAATACTTCCTATTGAAATGCAG 58.659 37.037 0.00 0.00 31.77 4.41
3854 15556 2.452105 GTCGCGAGTCTGAATACTTCC 58.548 52.381 10.24 0.00 0.00 3.46
3855 15557 2.102633 CGTCGCGAGTCTGAATACTTC 58.897 52.381 10.24 0.00 0.00 3.01
3909 15614 4.869215 TGTACAAATGTTGCTTCACCATG 58.131 39.130 0.00 0.00 0.00 3.66
3910 15615 5.301551 TCTTGTACAAATGTTGCTTCACCAT 59.698 36.000 10.03 0.00 0.00 3.55
3911 15616 4.642437 TCTTGTACAAATGTTGCTTCACCA 59.358 37.500 10.03 0.00 0.00 4.17
3920 15625 6.350445 GGCAATCCATCTCTTGTACAAATGTT 60.350 38.462 10.03 0.19 0.00 2.71
3921 15626 5.126061 GGCAATCCATCTCTTGTACAAATGT 59.874 40.000 10.03 0.00 0.00 2.71
3927 15632 3.179443 TCGGCAATCCATCTCTTGTAC 57.821 47.619 0.00 0.00 0.00 2.90
3930 15635 3.474600 AGAATCGGCAATCCATCTCTTG 58.525 45.455 0.00 0.00 0.00 3.02
3932 15637 3.118112 ACAAGAATCGGCAATCCATCTCT 60.118 43.478 0.00 0.00 0.00 3.10
3935 15640 3.629398 AGAACAAGAATCGGCAATCCATC 59.371 43.478 0.00 0.00 0.00 3.51
3942 15647 4.338118 ACAAAAAGAGAACAAGAATCGGCA 59.662 37.500 0.00 0.00 0.00 5.69
3974 15679 4.519540 TTTGGCTAAATTGTGGCTTCTC 57.480 40.909 0.00 0.00 0.00 2.87
3995 15700 5.806654 AATAGCACTGGACCACAAATTTT 57.193 34.783 0.00 0.00 0.00 1.82
3996 15701 5.806654 AAATAGCACTGGACCACAAATTT 57.193 34.783 0.00 0.00 0.00 1.82
3997 15702 5.304101 TCAAAATAGCACTGGACCACAAATT 59.696 36.000 0.00 0.00 0.00 1.82
3998 15703 4.832266 TCAAAATAGCACTGGACCACAAAT 59.168 37.500 0.00 0.00 0.00 2.32
4002 15707 4.380867 CCATTCAAAATAGCACTGGACCAC 60.381 45.833 0.00 0.00 0.00 4.16
4007 15712 2.496871 TGGCCATTCAAAATAGCACTGG 59.503 45.455 0.00 0.00 0.00 4.00
4010 15715 3.261580 GGTTGGCCATTCAAAATAGCAC 58.738 45.455 6.09 0.00 34.09 4.40
4040 15745 3.030291 TGCACCATTGAAGGTCACTTTT 58.970 40.909 0.00 0.00 40.77 2.27
4044 15749 1.317613 TGTGCACCATTGAAGGTCAC 58.682 50.000 15.69 0.00 40.77 3.67
4046 15751 1.888512 ACATGTGCACCATTGAAGGTC 59.111 47.619 15.69 0.00 40.77 3.85
4059 15764 8.538409 AAAAGAATTATTTGGAAGACATGTGC 57.462 30.769 1.15 0.00 0.00 4.57
4075 15780 6.150976 CCTGCACACCACTATGAAAAGAATTA 59.849 38.462 0.00 0.00 0.00 1.40
4086 15791 1.604378 GAGCCCTGCACACCACTAT 59.396 57.895 0.00 0.00 0.00 2.12
4095 15800 1.433121 AAAAATTTGGGAGCCCTGCA 58.567 45.000 7.16 0.00 36.94 4.41
4132 15837 2.138320 CACACGGCTAGCAATGGATAG 58.862 52.381 18.24 2.67 36.10 2.08
4134 15839 0.253044 ACACACGGCTAGCAATGGAT 59.747 50.000 18.24 3.70 0.00 3.41
4136 15841 0.881118 AAACACACGGCTAGCAATGG 59.119 50.000 18.24 10.02 0.00 3.16
4159 15864 6.421377 TTTATCTTGACAATGACACGGATG 57.579 37.500 9.25 0.00 0.00 3.51
4160 15865 8.908786 ATATTTATCTTGACAATGACACGGAT 57.091 30.769 0.00 0.00 0.00 4.18
4163 15868 9.567917 CGTAATATTTATCTTGACAATGACACG 57.432 33.333 0.00 0.00 0.00 4.49
4186 15891 0.543410 TCCTTGGACAAGCCTCCGTA 60.543 55.000 6.54 0.00 37.11 4.02
4188 15893 1.078848 CTCCTTGGACAAGCCTCCG 60.079 63.158 6.54 0.00 37.11 4.63
4203 15908 2.052157 CACGTTTCTGAGTTCGTCTCC 58.948 52.381 0.00 0.00 42.12 3.71
4209 15914 1.865340 GTGACCCACGTTTCTGAGTTC 59.135 52.381 0.00 0.00 0.00 3.01
4220 15925 1.269448 CCCAATTTTGAGTGACCCACG 59.731 52.381 0.00 0.00 39.64 4.94
4303 16015 2.039818 ATTCACATGCAGCTCTCCTG 57.960 50.000 0.00 0.00 44.67 3.86
4344 16056 0.399949 TCGTGGCTTATGGGATCCCT 60.400 55.000 31.05 18.57 36.94 4.20
4350 16062 4.540153 CACCTCGTGGCTTATGGG 57.460 61.111 2.76 0.00 36.63 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.