Multiple sequence alignment - TraesCS2B01G395900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G395900 chr2B 100.000 3159 0 0 1 3159 561284795 561281637 0.000000e+00 5834
1 TraesCS2B01G395900 chr2B 94.964 139 7 0 1560 1698 800545043 800544905 5.310000e-53 219
2 TraesCS2B01G395900 chr2B 95.833 96 4 0 2860 2955 655636404 655636499 4.220000e-34 156
3 TraesCS2B01G395900 chr2D 93.532 1608 77 9 2 1587 478875872 478874270 0.000000e+00 2368
4 TraesCS2B01G395900 chr2D 95.129 698 25 3 1682 2376 478874143 478873452 0.000000e+00 1092
5 TraesCS2B01G395900 chr2D 91.211 512 16 5 2386 2871 478873368 478872860 0.000000e+00 669
6 TraesCS2B01G395900 chr2D 96.618 207 6 1 2954 3159 478872861 478872655 3.020000e-90 342
7 TraesCS2B01G395900 chr2A 88.938 1582 118 24 5 1568 621567983 621566441 0.000000e+00 1899
8 TraesCS2B01G395900 chr2A 91.127 710 34 7 1690 2376 621566444 621565741 0.000000e+00 935
9 TraesCS2B01G395900 chr2A 85.249 522 38 8 2386 2871 621565656 621565138 4.700000e-138 501
10 TraesCS2B01G395900 chr2A 96.985 199 5 1 2954 3152 621565139 621564942 1.820000e-87 333
11 TraesCS2B01G395900 chr7B 97.143 140 1 3 1561 1698 704672001 704671863 1.890000e-57 233
12 TraesCS2B01G395900 chr3A 98.438 128 2 0 1566 1693 632274369 632274242 3.170000e-55 226
13 TraesCS2B01G395900 chr6B 95.652 138 6 0 1558 1695 716890335 716890472 4.100000e-54 222
14 TraesCS2B01G395900 chr6B 95.652 138 5 1 1560 1696 191198141 191198004 1.480000e-53 220
15 TraesCS2B01G395900 chr6B 91.667 108 6 3 2851 2956 116281211 116281105 2.540000e-31 147
16 TraesCS2B01G395900 chr3D 95.683 139 5 1 1559 1696 67064776 67064914 4.100000e-54 222
17 TraesCS2B01G395900 chr1B 95.652 138 5 1 1560 1696 41782550 41782687 1.480000e-53 220
18 TraesCS2B01G395900 chr5D 95.000 140 5 1 1554 1693 179777678 179777541 5.310000e-53 219
19 TraesCS2B01G395900 chr5D 93.000 100 6 1 2860 2959 411820912 411820814 9.130000e-31 145
20 TraesCS2B01G395900 chr4B 93.793 145 9 0 1556 1700 445007494 445007350 5.310000e-53 219
21 TraesCS2B01G395900 chr7D 98.851 87 1 0 2869 2955 4798902 4798816 4.220000e-34 156
22 TraesCS2B01G395900 chr7D 93.204 103 7 0 2870 2972 426776950 426777052 5.460000e-33 152
23 TraesCS2B01G395900 chr6D 93.750 96 6 0 2860 2955 70326526 70326621 9.130000e-31 145
24 TraesCS2B01G395900 chr6D 93.750 96 6 0 2860 2955 324886693 324886788 9.130000e-31 145
25 TraesCS2B01G395900 chr4D 91.509 106 8 1 2850 2955 494801397 494801293 9.130000e-31 145
26 TraesCS2B01G395900 chr5A 89.286 112 10 2 2845 2956 580456940 580457049 4.250000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G395900 chr2B 561281637 561284795 3158 True 5834.00 5834 100.00000 1 3159 1 chr2B.!!$R1 3158
1 TraesCS2B01G395900 chr2D 478872655 478875872 3217 True 1117.75 2368 94.12250 2 3159 4 chr2D.!!$R1 3157
2 TraesCS2B01G395900 chr2A 621564942 621567983 3041 True 917.00 1899 90.57475 5 3152 4 chr2A.!!$R1 3147

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 233 0.036483 TTAGCAGGCGAGCACAATCA 60.036 50.0 7.67 0.0 36.85 2.57 F
438 458 0.260230 TCTTTTGGCCCACTCCAACA 59.740 50.0 0.00 0.0 45.08 3.33 F
462 482 0.674581 TGATCTTTCGTGCTGCCTGG 60.675 55.0 0.00 0.0 0.00 4.45 F
1194 1218 0.820226 CCTCCTGTGAGAGCGATGAA 59.180 55.0 0.00 0.0 41.42 2.57 F
1581 1609 0.911769 TAAGTACTCCCTCCGTCCGA 59.088 55.0 0.00 0.0 0.00 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1675 1725 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.0 0.00 3.46 R
1678 1728 0.107508 TGTACTACTCCCTCCGTCCG 60.108 60.000 0.00 0.0 0.00 4.79 R
2111 2178 0.603569 ACCTCGCGAAGAACATGAGT 59.396 50.000 12.53 0.0 0.00 3.41 R
2152 2219 0.107508 TGCCAGAGCCAGACTAATGC 60.108 55.000 0.00 0.0 38.69 3.56 R
2876 3074 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
215 233 0.036483 TTAGCAGGCGAGCACAATCA 60.036 50.000 7.67 0.00 36.85 2.57
223 241 1.065102 GCGAGCACAATCATGAAGCAT 59.935 47.619 0.00 0.00 34.91 3.79
227 245 1.835121 CACAATCATGAAGCATGCCG 58.165 50.000 15.66 0.00 41.18 5.69
438 458 0.260230 TCTTTTGGCCCACTCCAACA 59.740 50.000 0.00 0.00 45.08 3.33
462 482 0.674581 TGATCTTTCGTGCTGCCTGG 60.675 55.000 0.00 0.00 0.00 4.45
474 494 2.028839 TGCTGCCTGGTCATTGAATTTG 60.029 45.455 0.00 0.00 0.00 2.32
503 523 7.250569 TCTTTTCCTGCGAATTGATGAATAAC 58.749 34.615 0.00 0.00 0.00 1.89
504 524 6.757897 TTTCCTGCGAATTGATGAATAACT 57.242 33.333 0.00 0.00 0.00 2.24
531 551 5.938438 TGCTAAAATGGAAATGGCAAAAC 57.062 34.783 0.00 0.00 0.00 2.43
587 610 6.346518 GCTTGAGAGAAAGAAGAGAAAAGACG 60.347 42.308 0.00 0.00 0.00 4.18
697 720 1.515020 CACCTCTCTTGCTCTCCGG 59.485 63.158 0.00 0.00 0.00 5.14
776 799 1.079127 CGTCACCACTGACCCATCC 60.079 63.158 0.00 0.00 43.64 3.51
788 811 0.952659 ACCCATCCTGTATCCTCCCT 59.047 55.000 0.00 0.00 0.00 4.20
797 820 3.610911 CTGTATCCTCCCTTTGACCAAC 58.389 50.000 0.00 0.00 0.00 3.77
813 837 3.715628 CCAACCTGGTCTTTGTCTTTG 57.284 47.619 0.00 0.00 31.35 2.77
874 898 5.047519 CCAAGAATCAGCAGTTTCCTTTCAT 60.048 40.000 0.00 0.00 0.00 2.57
880 904 4.520492 TCAGCAGTTTCCTTTCATTTCTCC 59.480 41.667 0.00 0.00 0.00 3.71
908 932 2.284405 TGTCCTCCCCTCGTTCCC 60.284 66.667 0.00 0.00 0.00 3.97
909 933 3.082055 GTCCTCCCCTCGTTCCCC 61.082 72.222 0.00 0.00 0.00 4.81
912 936 2.669240 CTCCCCTCGTTCCCCAAC 59.331 66.667 0.00 0.00 0.00 3.77
916 940 1.302511 CCCTCGTTCCCCAACACTG 60.303 63.158 0.00 0.00 32.14 3.66
998 1022 5.491982 CCAGAGGAAGCAGTACAAATTACT 58.508 41.667 0.00 0.00 0.00 2.24
1072 1096 2.159043 GCCATCGAACTCTTCTCCATGA 60.159 50.000 0.00 0.00 0.00 3.07
1194 1218 0.820226 CCTCCTGTGAGAGCGATGAA 59.180 55.000 0.00 0.00 41.42 2.57
1212 1236 2.072298 GAACGCAAGAAGATGCTCACT 58.928 47.619 0.00 0.00 44.21 3.41
1262 1286 1.634702 GACGAGGTGATGACTGCTTC 58.365 55.000 0.00 0.00 0.00 3.86
1268 1292 1.003580 GGTGATGACTGCTTCCTTCCA 59.996 52.381 0.00 0.00 0.00 3.53
1282 1309 3.702792 TCCTTCCACTTGTTTGGTCAAA 58.297 40.909 0.00 0.00 37.93 2.69
1325 1352 7.148373 GCCTTATTTCATTGCAAATTCACATGT 60.148 33.333 1.71 0.00 0.00 3.21
1360 1387 4.985538 ACACAAGTTATCAGGGTTCATGT 58.014 39.130 0.00 0.00 0.00 3.21
1432 1459 6.092748 ACTTAATTTGCAATTGCGTCCTAAG 58.907 36.000 24.58 24.99 45.83 2.18
1433 1460 4.782019 AATTTGCAATTGCGTCCTAAGA 57.218 36.364 24.58 2.21 45.83 2.10
1434 1461 3.829886 TTTGCAATTGCGTCCTAAGAG 57.170 42.857 24.58 0.00 45.83 2.85
1435 1462 1.086696 TGCAATTGCGTCCTAAGAGC 58.913 50.000 24.58 0.00 45.83 4.09
1466 1493 9.077885 AGACAGATTATTTAAAGTTTTGCCTGA 57.922 29.630 0.00 0.00 0.00 3.86
1499 1527 9.989869 GCTCAACATTTTCTAAGTAAAGGTATC 57.010 33.333 0.00 0.00 30.28 2.24
1578 1606 6.212888 TGTTTAATAAGTACTCCCTCCGTC 57.787 41.667 0.00 0.00 0.00 4.79
1580 1608 1.978454 ATAAGTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
1581 1609 0.911769 TAAGTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
1587 1615 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1588 1616 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1589 1617 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1593 1621 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1595 1623 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1596 1624 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1597 1625 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1599 1627 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1600 1628 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1602 1630 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
1603 1631 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
1613 1641 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
1616 1666 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
1630 1680 8.980832 AAAAGGGGATGTATCTAGATGTATCT 57.019 34.615 15.79 0.00 40.86 1.98
1633 1683 9.707957 AAGGGGATGTATCTAGATGTATCTTAG 57.292 37.037 15.79 0.00 38.32 2.18
1634 1684 8.851876 AGGGGATGTATCTAGATGTATCTTAGT 58.148 37.037 15.79 3.72 38.32 2.24
1658 1708 9.762381 AGTTATAAATACATCCCTTTTTGTCCA 57.238 29.630 0.00 0.00 0.00 4.02
1663 1713 8.620116 AAATACATCCCTTTTTGTCCATTTTG 57.380 30.769 0.00 0.00 0.00 2.44
1664 1714 5.885449 ACATCCCTTTTTGTCCATTTTGA 57.115 34.783 0.00 0.00 0.00 2.69
1665 1715 6.438186 ACATCCCTTTTTGTCCATTTTGAT 57.562 33.333 0.00 0.00 0.00 2.57
1666 1716 6.232692 ACATCCCTTTTTGTCCATTTTGATG 58.767 36.000 0.00 0.00 33.80 3.07
1668 1718 5.852827 TCCCTTTTTGTCCATTTTGATGAC 58.147 37.500 0.00 0.00 0.00 3.06
1669 1719 5.365025 TCCCTTTTTGTCCATTTTGATGACA 59.635 36.000 0.00 0.00 0.00 3.58
1670 1720 6.054295 CCCTTTTTGTCCATTTTGATGACAA 58.946 36.000 0.00 0.00 34.47 3.18
1671 1721 6.203338 CCCTTTTTGTCCATTTTGATGACAAG 59.797 38.462 0.00 0.00 37.13 3.16
1674 1724 9.480053 CTTTTTGTCCATTTTGATGACAAGTAT 57.520 29.630 0.00 0.00 37.13 2.12
1675 1725 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
1676 1726 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
1677 1727 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
1678 1728 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
1679 1729 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
1680 1730 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
1773 1835 3.314357 ACTTAAGCAAGTCGTTTTCACCC 59.686 43.478 1.29 0.00 41.25 4.61
1776 1838 1.676006 AGCAAGTCGTTTTCACCCTTG 59.324 47.619 0.00 0.00 34.01 3.61
1838 1900 2.500098 TGACTGGGCTTTCGCTAATAGT 59.500 45.455 0.00 0.00 36.09 2.12
1893 1955 4.408182 ACTCAGTCAAGTGCACTTAGTT 57.592 40.909 30.67 16.05 34.28 2.24
1966 2028 5.739959 ACTTTACAAAATGGTTGTTTGGCT 58.260 33.333 0.00 0.00 39.74 4.75
2110 2177 2.372690 GGTGTGCTACAGCGACACG 61.373 63.158 20.44 0.00 45.28 4.49
2111 2178 1.371267 GTGTGCTACAGCGACACGA 60.371 57.895 15.88 0.00 45.83 4.35
2163 2230 1.153647 TGCCGTCGCATTAGTCTGG 60.154 57.895 0.00 0.00 41.12 3.86
2164 2231 2.526120 GCCGTCGCATTAGTCTGGC 61.526 63.158 0.00 0.00 34.03 4.85
2165 2232 1.141881 CCGTCGCATTAGTCTGGCT 59.858 57.895 0.00 0.00 0.00 4.75
2166 2233 0.872021 CCGTCGCATTAGTCTGGCTC 60.872 60.000 0.00 0.00 0.00 4.70
2167 2234 0.101399 CGTCGCATTAGTCTGGCTCT 59.899 55.000 0.00 0.00 0.00 4.09
2168 2235 1.565305 GTCGCATTAGTCTGGCTCTG 58.435 55.000 0.00 0.00 0.00 3.35
2169 2236 0.461548 TCGCATTAGTCTGGCTCTGG 59.538 55.000 0.00 0.00 0.00 3.86
2173 2240 2.492012 CATTAGTCTGGCTCTGGCATC 58.508 52.381 0.00 0.00 40.87 3.91
2175 2242 0.325577 TAGTCTGGCTCTGGCATCCA 60.326 55.000 0.00 0.00 40.87 3.41
2220 2287 1.873591 GAGCTTCGCAGTTCTTGGAAA 59.126 47.619 0.00 0.00 0.00 3.13
2239 2306 7.608308 TGGAAACAAGAAATTGTCCAAAAAG 57.392 32.000 0.00 0.00 37.44 2.27
2254 2321 4.578928 TCCAAAAAGCTGTACAAAGAGGAC 59.421 41.667 0.00 0.00 0.00 3.85
2376 2461 7.039313 AGGTGTTCCTGTCAAGTTTATTTTC 57.961 36.000 0.00 0.00 43.33 2.29
2378 2463 7.996644 AGGTGTTCCTGTCAAGTTTATTTTCTA 59.003 33.333 0.00 0.00 43.33 2.10
2379 2464 8.626526 GGTGTTCCTGTCAAGTTTATTTTCTAA 58.373 33.333 0.00 0.00 0.00 2.10
2382 2467 9.181805 GTTCCTGTCAAGTTTATTTTCTAAAGC 57.818 33.333 0.00 0.00 0.00 3.51
2383 2468 8.691661 TCCTGTCAAGTTTATTTTCTAAAGCT 57.308 30.769 0.00 0.00 0.00 3.74
2384 2469 8.784043 TCCTGTCAAGTTTATTTTCTAAAGCTC 58.216 33.333 0.00 0.00 0.00 4.09
2634 2821 0.989164 TTATCGTTGCGCTTCAGACG 59.011 50.000 9.73 11.33 36.89 4.18
2717 2905 0.324923 ATGATGCATTGTGGTGGGCT 60.325 50.000 0.00 0.00 0.00 5.19
2731 2919 2.749621 GGTGGGCTTGAGTAGTGATTTG 59.250 50.000 0.00 0.00 0.00 2.32
2785 2973 7.208777 TCTCTCATCTATTCTGCATTTCAGTC 58.791 38.462 0.00 0.00 43.32 3.51
2827 3025 1.866880 GCAGGCGATTGCATTTCATCC 60.867 52.381 7.38 0.00 45.35 3.51
2841 3039 3.880047 TTCATCCGAAACCTATGTCGT 57.120 42.857 0.00 0.00 35.48 4.34
2849 3047 4.738740 CCGAAACCTATGTCGTGAGAATAC 59.261 45.833 0.00 0.00 45.01 1.89
2874 3072 9.341078 ACACTAGAGTTTACTAGCTAATACTCC 57.659 37.037 15.21 4.46 42.29 3.85
2875 3073 8.785946 CACTAGAGTTTACTAGCTAATACTCCC 58.214 40.741 15.21 0.00 42.29 4.30
2876 3074 8.726202 ACTAGAGTTTACTAGCTAATACTCCCT 58.274 37.037 15.21 4.31 42.29 4.20
2877 3075 9.223099 CTAGAGTTTACTAGCTAATACTCCCTC 57.777 40.741 15.21 7.20 34.43 4.30
2878 3076 7.005902 AGAGTTTACTAGCTAATACTCCCTCC 58.994 42.308 15.21 0.00 34.10 4.30
2879 3077 5.769162 AGTTTACTAGCTAATACTCCCTCCG 59.231 44.000 0.00 0.00 0.00 4.63
2880 3078 3.880168 ACTAGCTAATACTCCCTCCGT 57.120 47.619 0.00 0.00 0.00 4.69
2881 3079 4.181799 ACTAGCTAATACTCCCTCCGTT 57.818 45.455 0.00 0.00 0.00 4.44
2882 3080 4.143543 ACTAGCTAATACTCCCTCCGTTC 58.856 47.826 0.00 0.00 0.00 3.95
2883 3081 2.317973 AGCTAATACTCCCTCCGTTCC 58.682 52.381 0.00 0.00 0.00 3.62
2884 3082 2.037144 GCTAATACTCCCTCCGTTCCA 58.963 52.381 0.00 0.00 0.00 3.53
2885 3083 2.433239 GCTAATACTCCCTCCGTTCCAA 59.567 50.000 0.00 0.00 0.00 3.53
2886 3084 3.118519 GCTAATACTCCCTCCGTTCCAAA 60.119 47.826 0.00 0.00 0.00 3.28
2887 3085 4.444449 GCTAATACTCCCTCCGTTCCAAAT 60.444 45.833 0.00 0.00 0.00 2.32
2888 3086 4.586306 AATACTCCCTCCGTTCCAAATT 57.414 40.909 0.00 0.00 0.00 1.82
2889 3087 5.703730 AATACTCCCTCCGTTCCAAATTA 57.296 39.130 0.00 0.00 0.00 1.40
2890 3088 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2891 3089 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2892 3090 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2893 3091 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2894 3092 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2895 3093 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2896 3094 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2897 3095 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2898 3096 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
2899 3097 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
2900 3098 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
2901 3099 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2902 3100 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
2903 3101 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
2904 3102 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
2905 3103 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
2906 3104 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
2907 3105 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
2908 3106 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
2909 3107 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
2910 3108 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
2911 3109 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
2912 3110 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
2913 3111 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
2914 3112 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
2915 3113 7.011295 ACTCGTCGTGGTTTTAGTTCAAATTTA 59.989 33.333 0.00 0.00 0.00 1.40
2916 3114 7.692088 TCGTCGTGGTTTTAGTTCAAATTTAA 58.308 30.769 0.00 0.00 0.00 1.52
2917 3115 8.180267 TCGTCGTGGTTTTAGTTCAAATTTAAA 58.820 29.630 0.00 0.00 0.00 1.52
2918 3116 8.254470 CGTCGTGGTTTTAGTTCAAATTTAAAC 58.746 33.333 0.00 0.00 0.00 2.01
2919 3117 9.292846 GTCGTGGTTTTAGTTCAAATTTAAACT 57.707 29.630 11.45 11.45 39.07 2.66
2931 3129 9.968620 GTTCAAATTTAAACTAAAATCACGACG 57.031 29.630 0.00 0.00 0.00 5.12
2932 3130 9.932699 TTCAAATTTAAACTAAAATCACGACGA 57.067 25.926 0.00 0.00 0.00 4.20
2933 3131 9.588774 TCAAATTTAAACTAAAATCACGACGAG 57.411 29.630 0.00 0.00 0.00 4.18
2934 3132 9.377383 CAAATTTAAACTAAAATCACGACGAGT 57.623 29.630 0.00 0.00 0.00 4.18
2940 3138 8.928844 AAACTAAAATCACGACGAGTAATTTG 57.071 30.769 0.00 0.00 0.00 2.32
2941 3139 7.878477 ACTAAAATCACGACGAGTAATTTGA 57.122 32.000 0.00 0.00 0.00 2.69
2942 3140 8.301730 ACTAAAATCACGACGAGTAATTTGAA 57.698 30.769 0.00 0.00 0.00 2.69
2943 3141 8.767085 ACTAAAATCACGACGAGTAATTTGAAA 58.233 29.630 0.00 0.00 0.00 2.69
2944 3142 9.755064 CTAAAATCACGACGAGTAATTTGAAAT 57.245 29.630 0.00 0.00 0.00 2.17
2945 3143 8.434870 AAAATCACGACGAGTAATTTGAAATG 57.565 30.769 0.00 0.00 0.00 2.32
2946 3144 5.524511 TCACGACGAGTAATTTGAAATGG 57.475 39.130 0.00 0.00 0.00 3.16
2947 3145 5.231702 TCACGACGAGTAATTTGAAATGGA 58.768 37.500 0.00 0.00 0.00 3.41
2948 3146 5.347635 TCACGACGAGTAATTTGAAATGGAG 59.652 40.000 0.00 0.00 0.00 3.86
2949 3147 4.630069 ACGACGAGTAATTTGAAATGGAGG 59.370 41.667 0.00 0.00 0.00 4.30
2950 3148 4.034048 CGACGAGTAATTTGAAATGGAGGG 59.966 45.833 0.00 0.00 0.00 4.30
2951 3149 5.174037 ACGAGTAATTTGAAATGGAGGGA 57.826 39.130 0.00 0.00 0.00 4.20
2952 3150 5.186198 ACGAGTAATTTGAAATGGAGGGAG 58.814 41.667 0.00 0.00 0.00 4.30
3061 3259 4.406648 TGCCACATGGAGAAGTATACTG 57.593 45.455 6.06 0.00 37.39 2.74
3152 3350 1.782569 GGGCTTTTGTCGCGTAAAAAC 59.217 47.619 18.93 15.81 0.00 2.43
3154 3352 1.445365 GCTTTTGTCGCGTAAAAACCG 59.555 47.619 18.93 11.80 0.00 4.44
3155 3353 2.707392 CTTTTGTCGCGTAAAAACCGT 58.293 42.857 18.93 0.00 0.00 4.83
3157 3355 3.933155 TTTGTCGCGTAAAAACCGTTA 57.067 38.095 5.77 0.00 0.00 3.18
3158 3356 3.502256 TTGTCGCGTAAAAACCGTTAG 57.498 42.857 5.77 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.392767 TTGCAAAAGTGTGACAGGTTAAA 57.607 34.783 0.00 0.00 0.00 1.52
32 33 8.668353 TCTTATGTGCAACTTCAGATGTAATTC 58.332 33.333 0.00 0.00 38.04 2.17
215 233 2.801679 CAAAAACAACGGCATGCTTCAT 59.198 40.909 18.92 0.00 0.00 2.57
223 241 2.428890 AGAACATCCAAAAACAACGGCA 59.571 40.909 0.00 0.00 0.00 5.69
227 245 8.327429 CAATTGTACAGAACATCCAAAAACAAC 58.673 33.333 0.00 0.00 38.10 3.32
438 458 2.421424 GGCAGCACGAAAGATCAGAATT 59.579 45.455 0.00 0.00 0.00 2.17
462 482 8.650714 GCAGGAAAAGAATACAAATTCAATGAC 58.349 33.333 1.35 0.00 43.44 3.06
474 494 6.785191 TCATCAATTCGCAGGAAAAGAATAC 58.215 36.000 0.00 0.00 35.40 1.89
503 523 7.846644 TGCCATTTCCATTTTAGCAATAAAG 57.153 32.000 0.00 0.00 0.00 1.85
504 524 8.627208 TTTGCCATTTCCATTTTAGCAATAAA 57.373 26.923 0.00 0.00 38.42 1.40
531 551 6.151004 TGACAACAACTCAATATGCAATGTG 58.849 36.000 0.00 0.00 0.00 3.21
587 610 0.527565 CTGCAACCAGCCAACCATAC 59.472 55.000 0.00 0.00 44.83 2.39
697 720 1.871126 GCCTTGCAGCCTTGAAGGAC 61.871 60.000 16.93 6.48 37.67 3.85
776 799 3.610911 GTTGGTCAAAGGGAGGATACAG 58.389 50.000 0.00 0.00 41.41 2.74
797 820 3.304928 GCATGACAAAGACAAAGACCAGG 60.305 47.826 0.00 0.00 0.00 4.45
813 837 0.512952 GGTGTCGACAAGTGCATGAC 59.487 55.000 21.95 4.01 0.00 3.06
874 898 2.305927 GGACACATGAAGGAGGGAGAAA 59.694 50.000 0.00 0.00 0.00 2.52
880 904 0.543749 GGGAGGACACATGAAGGAGG 59.456 60.000 0.00 0.00 0.00 4.30
908 932 3.287867 AGATAGAATGGGCAGTGTTGG 57.712 47.619 0.00 0.00 0.00 3.77
909 933 8.509690 CATTTATAGATAGAATGGGCAGTGTTG 58.490 37.037 0.00 0.00 0.00 3.33
912 936 7.397221 TCCATTTATAGATAGAATGGGCAGTG 58.603 38.462 12.80 0.00 46.22 3.66
946 970 9.282247 CCGATTTCTGTATGAAAAAGATCAAAG 57.718 33.333 0.00 0.00 46.32 2.77
998 1022 5.331906 TCAATTCAGTCCCAAAATCCATCA 58.668 37.500 0.00 0.00 0.00 3.07
1072 1096 5.504853 GTCTTCAATCTCCAAATCCTCCTT 58.495 41.667 0.00 0.00 0.00 3.36
1282 1309 1.538687 GGCATGCTTTGAGCCCAAGT 61.539 55.000 18.92 0.00 41.51 3.16
1325 1352 9.463443 CTGATAACTTGTGTATGTATGATTCGA 57.537 33.333 0.00 0.00 0.00 3.71
1360 1387 8.303780 TGTGAAATTTGATAATCAAGGGCATA 57.696 30.769 0.00 0.00 37.70 3.14
1499 1527 3.798337 GCAACATGAACTGAACCACTTTG 59.202 43.478 0.00 0.00 0.00 2.77
1578 1606 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
1587 1615 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
1588 1616 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
1589 1617 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
1600 1628 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
1605 1633 8.980832 AGATACATCTAGATACATCCCCTTTT 57.019 34.615 16.61 1.84 34.85 2.27
1606 1634 8.980832 AAGATACATCTAGATACATCCCCTTT 57.019 34.615 16.61 6.94 35.76 3.11
1608 1636 8.851876 ACTAAGATACATCTAGATACATCCCCT 58.148 37.037 16.61 8.66 35.76 4.79
1609 1637 9.482175 AACTAAGATACATCTAGATACATCCCC 57.518 37.037 16.61 1.74 35.76 4.81
1632 1682 9.762381 TGGACAAAAAGGGATGTATTTATAACT 57.238 29.630 0.00 0.00 0.00 2.24
1639 1689 7.972301 TCAAAATGGACAAAAAGGGATGTATT 58.028 30.769 0.00 0.00 0.00 1.89
1648 1698 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
1650 1700 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
1652 1702 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
1655 1705 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
1656 1706 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
1657 1707 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1658 1708 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1659 1709 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1661 1711 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1662 1712 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1663 1713 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1664 1714 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1665 1715 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1666 1716 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1668 1718 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1669 1719 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1670 1720 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1671 1721 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1674 1724 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
1675 1725 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
1676 1726 0.911769 TACTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
1677 1727 0.179000 GTACTACTCCCTCCGTCCGA 59.821 60.000 0.00 0.00 0.00 4.55
1678 1728 0.107508 TGTACTACTCCCTCCGTCCG 60.108 60.000 0.00 0.00 0.00 4.79
1679 1729 1.211457 TCTGTACTACTCCCTCCGTCC 59.789 57.143 0.00 0.00 0.00 4.79
1680 1730 2.706339 TCTGTACTACTCCCTCCGTC 57.294 55.000 0.00 0.00 0.00 4.79
1773 1835 2.099098 ACGCAAAAGGAAACAGGACAAG 59.901 45.455 0.00 0.00 0.00 3.16
1776 1838 2.459934 CAACGCAAAAGGAAACAGGAC 58.540 47.619 0.00 0.00 0.00 3.85
1838 1900 4.734402 GCTGATGAACAAGCACTTTGAACA 60.734 41.667 0.00 0.00 39.21 3.18
1893 1955 2.224606 CACTGCAGAAAGCCAAAGAGA 58.775 47.619 23.35 0.00 44.83 3.10
1966 2028 4.503910 CCAGATCGTTGTCATAAGGAACA 58.496 43.478 0.00 0.00 0.00 3.18
2110 2177 1.272781 CCTCGCGAAGAACATGAGTC 58.727 55.000 11.33 0.00 0.00 3.36
2111 2178 0.603569 ACCTCGCGAAGAACATGAGT 59.396 50.000 12.53 0.00 0.00 3.41
2152 2219 0.107508 TGCCAGAGCCAGACTAATGC 60.108 55.000 0.00 0.00 38.69 3.56
2231 2298 4.578928 GTCCTCTTTGTACAGCTTTTTGGA 59.421 41.667 0.00 0.00 0.00 3.53
2239 2306 1.443802 GCCTGTCCTCTTTGTACAGC 58.556 55.000 0.00 0.00 39.42 4.40
2254 2321 2.757099 GCCCCTCATGTTGGCCTG 60.757 66.667 3.32 0.00 39.30 4.85
2441 2601 2.684001 TGCAAGGTATACCCAACGAG 57.316 50.000 18.65 3.71 36.42 4.18
2648 2835 7.968246 AGAACGTTGATTGATTGACTATTGAG 58.032 34.615 5.00 0.00 0.00 3.02
2649 2836 7.905604 AGAACGTTGATTGATTGACTATTGA 57.094 32.000 5.00 0.00 0.00 2.57
2717 2905 2.333926 CGTCGGCAAATCACTACTCAA 58.666 47.619 0.00 0.00 0.00 3.02
2746 2934 5.144100 AGATGAGAGATCAAACCGAGGTAT 58.856 41.667 0.00 0.00 0.00 2.73
2748 2936 3.370104 AGATGAGAGATCAAACCGAGGT 58.630 45.455 0.00 0.00 0.00 3.85
2785 2973 6.856895 TGCTATTATCCTGTGACATAGATCG 58.143 40.000 0.00 0.00 0.00 3.69
2827 3025 5.229469 GTGTATTCTCACGACATAGGTTTCG 59.771 44.000 0.00 0.00 41.14 3.46
2849 3047 8.785946 GGGAGTATTAGCTAGTAAACTCTAGTG 58.214 40.741 15.06 0.00 39.44 2.74
2869 3067 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2870 3068 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2871 3069 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2872 3070 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2873 3071 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2874 3072 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2875 3073 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2876 3074 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
2877 3075 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
2878 3076 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
2879 3077 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
2880 3078 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
2881 3079 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
2882 3080 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
2883 3081 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
2884 3082 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
2885 3083 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
2886 3084 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
2887 3085 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
2888 3086 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
2889 3087 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
2890 3088 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
2891 3089 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
2892 3090 7.895582 TTAAATTTGAACTAAAACCACGACG 57.104 32.000 0.00 0.00 0.00 5.12
2893 3091 9.292846 AGTTTAAATTTGAACTAAAACCACGAC 57.707 29.630 22.70 0.00 35.55 4.34
2905 3103 9.968620 CGTCGTGATTTTAGTTTAAATTTGAAC 57.031 29.630 15.93 15.93 0.00 3.18
2906 3104 9.932699 TCGTCGTGATTTTAGTTTAAATTTGAA 57.067 25.926 0.00 0.00 0.00 2.69
2907 3105 9.588774 CTCGTCGTGATTTTAGTTTAAATTTGA 57.411 29.630 0.00 0.00 0.00 2.69
2908 3106 9.377383 ACTCGTCGTGATTTTAGTTTAAATTTG 57.623 29.630 0.00 0.00 0.00 2.32
2915 3113 8.767085 TCAAATTACTCGTCGTGATTTTAGTTT 58.233 29.630 0.56 0.00 39.10 2.66
2916 3114 8.301730 TCAAATTACTCGTCGTGATTTTAGTT 57.698 30.769 0.56 0.00 39.10 2.24
2917 3115 7.878477 TCAAATTACTCGTCGTGATTTTAGT 57.122 32.000 0.56 0.00 39.10 2.24
2918 3116 9.755064 ATTTCAAATTACTCGTCGTGATTTTAG 57.245 29.630 0.56 0.00 39.10 1.85
2919 3117 9.536558 CATTTCAAATTACTCGTCGTGATTTTA 57.463 29.630 0.56 0.35 39.10 1.52
2920 3118 7.537306 CCATTTCAAATTACTCGTCGTGATTTT 59.463 33.333 0.56 0.00 39.10 1.82
2921 3119 7.021196 CCATTTCAAATTACTCGTCGTGATTT 58.979 34.615 0.56 5.16 41.02 2.17
2922 3120 6.370442 TCCATTTCAAATTACTCGTCGTGATT 59.630 34.615 0.56 0.00 33.69 2.57
2923 3121 5.872617 TCCATTTCAAATTACTCGTCGTGAT 59.127 36.000 0.56 0.00 0.00 3.06
2924 3122 5.231702 TCCATTTCAAATTACTCGTCGTGA 58.768 37.500 0.56 0.00 0.00 4.35
2925 3123 5.445939 CCTCCATTTCAAATTACTCGTCGTG 60.446 44.000 0.00 0.00 0.00 4.35
2926 3124 4.630069 CCTCCATTTCAAATTACTCGTCGT 59.370 41.667 0.00 0.00 0.00 4.34
2927 3125 4.034048 CCCTCCATTTCAAATTACTCGTCG 59.966 45.833 0.00 0.00 0.00 5.12
2928 3126 5.183228 TCCCTCCATTTCAAATTACTCGTC 58.817 41.667 0.00 0.00 0.00 4.20
2929 3127 5.174037 TCCCTCCATTTCAAATTACTCGT 57.826 39.130 0.00 0.00 0.00 4.18
2930 3128 5.186198 ACTCCCTCCATTTCAAATTACTCG 58.814 41.667 0.00 0.00 0.00 4.18
2931 3129 7.339482 ACTACTCCCTCCATTTCAAATTACTC 58.661 38.462 0.00 0.00 0.00 2.59
2932 3130 7.272144 ACTACTCCCTCCATTTCAAATTACT 57.728 36.000 0.00 0.00 0.00 2.24
2933 3131 7.628580 GCAACTACTCCCTCCATTTCAAATTAC 60.629 40.741 0.00 0.00 0.00 1.89
2934 3132 6.377146 GCAACTACTCCCTCCATTTCAAATTA 59.623 38.462 0.00 0.00 0.00 1.40
2935 3133 5.185828 GCAACTACTCCCTCCATTTCAAATT 59.814 40.000 0.00 0.00 0.00 1.82
2936 3134 4.706962 GCAACTACTCCCTCCATTTCAAAT 59.293 41.667 0.00 0.00 0.00 2.32
2937 3135 4.079253 GCAACTACTCCCTCCATTTCAAA 58.921 43.478 0.00 0.00 0.00 2.69
2938 3136 3.330701 AGCAACTACTCCCTCCATTTCAA 59.669 43.478 0.00 0.00 0.00 2.69
2939 3137 2.912956 AGCAACTACTCCCTCCATTTCA 59.087 45.455 0.00 0.00 0.00 2.69
2940 3138 3.636153 AGCAACTACTCCCTCCATTTC 57.364 47.619 0.00 0.00 0.00 2.17
2941 3139 5.717119 AATAGCAACTACTCCCTCCATTT 57.283 39.130 0.00 0.00 0.00 2.32
2942 3140 5.717119 AAATAGCAACTACTCCCTCCATT 57.283 39.130 0.00 0.00 0.00 3.16
2943 3141 8.506196 TTATAAATAGCAACTACTCCCTCCAT 57.494 34.615 0.00 0.00 0.00 3.41
2944 3142 7.787904 TCTTATAAATAGCAACTACTCCCTCCA 59.212 37.037 0.00 0.00 0.00 3.86
2945 3143 8.191534 TCTTATAAATAGCAACTACTCCCTCC 57.808 38.462 0.00 0.00 0.00 4.30
2974 3172 2.781174 ACCCCACTTCAACAAGGTAGAA 59.219 45.455 0.00 0.00 33.37 2.10
3041 3239 4.672587 TCAGTATACTTCTCCATGTGGC 57.327 45.455 1.56 0.00 34.44 5.01
3061 3259 4.221482 AGCATTTTGAGGATTGTTCCCTTC 59.779 41.667 0.00 0.00 43.76 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.