Multiple sequence alignment - TraesCS2B01G395600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G395600 chr2B 100.000 5660 0 0 1 5660 561224047 561229706 0.00 10453.0
1 TraesCS2B01G395600 chr2D 95.262 3208 100 16 3 3178 478708813 478705626 0.00 5035.0
2 TraesCS2B01G395600 chr2D 92.369 2503 102 34 3195 5659 478705530 478703079 0.00 3482.0
3 TraesCS2B01G395600 chr2D 100.000 28 0 0 3171 3198 478705622 478705595 0.01 52.8
4 TraesCS2B01G395600 chr2A 93.828 3224 133 36 3 3178 621476556 621479761 0.00 4791.0
5 TraesCS2B01G395600 chr2A 93.576 2475 117 18 3200 5659 621479987 621482434 0.00 3651.0
6 TraesCS2B01G395600 chr2A 100.000 28 0 0 3171 3198 621479765 621479792 0.01 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G395600 chr2B 561224047 561229706 5659 False 10453.0 10453 100.000000 1 5660 1 chr2B.!!$F1 5659
1 TraesCS2B01G395600 chr2D 478703079 478708813 5734 True 2856.6 5035 95.877000 3 5659 3 chr2D.!!$R1 5656
2 TraesCS2B01G395600 chr2A 621476556 621482434 5878 False 2831.6 4791 95.801333 3 5659 3 chr2A.!!$F1 5656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.320771 TCCTTTGTGCGCTTCTCTCC 60.321 55.000 9.73 0.0 0.00 3.71 F
1375 1425 0.247736 GTGGTCTCCATCGTTCAGCT 59.752 55.000 0.00 0.0 35.28 4.24 F
1376 1426 0.976641 TGGTCTCCATCGTTCAGCTT 59.023 50.000 0.00 0.0 0.00 3.74 F
1377 1427 1.347707 TGGTCTCCATCGTTCAGCTTT 59.652 47.619 0.00 0.0 0.00 3.51 F
2874 2947 3.139584 TCCTATTCAGACGGATACAGGGA 59.860 47.826 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1575 1625 0.659427 ATTGGCATCTCATCGCAACG 59.341 50.000 0.00 0.0 0.00 4.10 R
2874 2947 0.036732 TGCGGCACAAAGGAAGAGAT 59.963 50.000 0.00 0.0 0.00 2.75 R
3341 3619 2.236893 CACCCCATTGCATAGCCTTTTT 59.763 45.455 0.00 0.0 0.00 1.94 R
3423 3705 4.070716 GGATCATGTGAACCATCAGATCC 58.929 47.826 4.61 0.0 42.71 3.36 R
4820 5109 0.038159 GGTTCCTCAGTCACCACTCG 60.038 60.000 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 0.320771 TCCTTTGTGCGCTTCTCTCC 60.321 55.000 9.73 0.00 0.00 3.71
60 62 0.526524 CGCTTCTCTCCTAGGCAACG 60.527 60.000 2.96 0.00 46.39 4.10
342 369 5.820423 GCTCTTTGTTGTTTATGGGGTTTTT 59.180 36.000 0.00 0.00 0.00 1.94
354 381 5.784578 ATGGGGTTTTTGTTACTCTTCAC 57.215 39.130 0.00 0.00 0.00 3.18
464 508 2.928757 CTCTGGCTGATTTCTGAACTCG 59.071 50.000 3.72 0.89 0.00 4.18
475 519 3.973206 TCTGAACTCGCCCAAGAATTA 57.027 42.857 0.00 0.00 0.00 1.40
495 539 9.163899 AGAATTACGTAGGAAAAGAAAGAATCC 57.836 33.333 0.00 0.00 0.00 3.01
566 610 1.197721 CTGTCATGCGGTTGGAAAGAC 59.802 52.381 0.00 0.00 0.00 3.01
630 677 8.687824 TTTGACAAGTGAAAGAAAATTCTGTC 57.312 30.769 6.42 6.42 41.09 3.51
676 723 3.997021 AGCATACTTCTTTCTGTTCCACG 59.003 43.478 0.00 0.00 0.00 4.94
737 787 8.797438 GTTCTTCCTGTATTGGATTCTCTTTTT 58.203 33.333 0.00 0.00 35.83 1.94
814 864 4.713814 TGCAGAGATTGTTATCAGGAGTCT 59.286 41.667 0.00 0.00 32.95 3.24
914 964 3.079478 TCTGATCTGCTGCCGGCT 61.079 61.111 29.70 5.42 42.39 5.52
1248 1298 3.498774 CTCAAATATGGAGGACCCCTG 57.501 52.381 0.00 0.00 31.76 4.45
1334 1384 3.630312 TCCACTTGTCTGGCTGTTTTTAC 59.370 43.478 0.00 0.00 0.00 2.01
1375 1425 0.247736 GTGGTCTCCATCGTTCAGCT 59.752 55.000 0.00 0.00 35.28 4.24
1376 1426 0.976641 TGGTCTCCATCGTTCAGCTT 59.023 50.000 0.00 0.00 0.00 3.74
1377 1427 1.347707 TGGTCTCCATCGTTCAGCTTT 59.652 47.619 0.00 0.00 0.00 3.51
1383 1433 3.797039 TCCATCGTTCAGCTTTATCCTG 58.203 45.455 0.00 0.00 0.00 3.86
1479 1529 3.560503 TCATTTTTGCGTTCGTTCCATC 58.439 40.909 0.00 0.00 0.00 3.51
1827 1878 9.463443 GTGCAACTGTACAAGAAGAAATTAATT 57.537 29.630 0.00 0.00 0.00 1.40
1979 2032 5.678955 AGTGGAAGGTACACTTATTCTCC 57.321 43.478 0.00 0.00 46.38 3.71
2090 2143 6.766944 TCTTGTCCATTCGTGTTACCTAAAAA 59.233 34.615 0.00 0.00 0.00 1.94
2229 2283 6.061022 TGAATTGGTAATACTTGCCTGAGA 57.939 37.500 0.00 0.00 36.27 3.27
2264 2318 5.334414 CCAATAGTTCTGTGCTGTTGAAGAC 60.334 44.000 10.30 0.00 37.28 3.01
2314 2369 9.204337 TGGAATATTGATTCTCATGAACCAAAT 57.796 29.630 0.00 0.00 38.99 2.32
2315 2370 9.472361 GGAATATTGATTCTCATGAACCAAATG 57.528 33.333 0.00 0.00 38.99 2.32
2732 2805 4.518278 ATTTTGAGGGGGCAAAAGTTTT 57.482 36.364 0.00 0.00 46.98 2.43
2873 2946 3.497332 TCCTATTCAGACGGATACAGGG 58.503 50.000 0.00 0.00 0.00 4.45
2874 2947 3.139584 TCCTATTCAGACGGATACAGGGA 59.860 47.826 0.00 0.00 0.00 4.20
2938 3011 7.671819 TCAATATCTATCTGGAGGTTGGTAGAG 59.328 40.741 0.00 0.00 0.00 2.43
3142 3216 5.669904 TGATGGTTCATTTACCCTAGGATCA 59.330 40.000 11.48 3.78 37.39 2.92
3264 3542 4.592942 TCTTAGGTCGTAGGAAAGCACTA 58.407 43.478 0.00 0.00 0.00 2.74
3341 3619 7.807433 GTCTGTGTGTTGATACAAAATAATGCA 59.193 33.333 0.00 0.00 35.69 3.96
3423 3705 2.907910 GGTGTAAGCTGCTTGATGTG 57.092 50.000 24.35 0.00 0.00 3.21
3440 3722 4.080186 TGATGTGGATCTGATGGTTCACAT 60.080 41.667 17.50 17.50 44.18 3.21
3464 3746 0.109179 CAATTGTGCATGGACCACCG 60.109 55.000 15.34 0.00 39.42 4.94
3526 3808 6.096282 ACAACAAAATTGCAGTACTTAGTGGT 59.904 34.615 0.00 0.00 0.00 4.16
3530 3812 6.560253 AAATTGCAGTACTTAGTGGTCTTG 57.440 37.500 0.00 0.00 0.00 3.02
3642 3926 9.497030 TTGTTATGTTGAAATATGTATCGTTGC 57.503 29.630 0.00 0.00 0.00 4.17
3674 3958 9.521503 CAAGAAATGATTAAGAGAGTCGTCATA 57.478 33.333 0.00 0.00 0.00 2.15
3685 3969 8.789881 AAGAGAGTCGTCATATTAGAAAATCG 57.210 34.615 0.00 0.00 0.00 3.34
3686 3970 8.155821 AGAGAGTCGTCATATTAGAAAATCGA 57.844 34.615 0.00 0.00 0.00 3.59
3687 3971 8.788806 AGAGAGTCGTCATATTAGAAAATCGAT 58.211 33.333 0.00 0.00 0.00 3.59
3688 3972 8.958175 AGAGTCGTCATATTAGAAAATCGATC 57.042 34.615 0.00 0.00 0.00 3.69
3689 3973 8.788806 AGAGTCGTCATATTAGAAAATCGATCT 58.211 33.333 0.00 0.00 0.00 2.75
3690 3974 8.735303 AGTCGTCATATTAGAAAATCGATCTG 57.265 34.615 0.00 0.00 0.00 2.90
3691 3975 8.353684 AGTCGTCATATTAGAAAATCGATCTGT 58.646 33.333 0.00 0.00 0.00 3.41
3692 3976 8.420945 GTCGTCATATTAGAAAATCGATCTGTG 58.579 37.037 0.00 0.00 0.00 3.66
3693 3977 8.349983 TCGTCATATTAGAAAATCGATCTGTGA 58.650 33.333 0.00 0.00 0.00 3.58
3694 3978 8.968242 CGTCATATTAGAAAATCGATCTGTGAA 58.032 33.333 0.00 0.00 0.00 3.18
3760 4044 5.061179 CCAAACTTGGGGTTATATAGACCG 58.939 45.833 0.09 0.00 44.70 4.79
3785 4069 2.097680 CGTGTGGTATTTAACGGGGT 57.902 50.000 0.00 0.00 32.55 4.95
3879 4163 1.671328 TGGTCGACGAGATTCAGCTAG 59.329 52.381 9.92 0.00 0.00 3.42
4034 4318 2.783135 TCAAGCATTTCAGGTCAGTCC 58.217 47.619 0.00 0.00 0.00 3.85
4048 4332 4.103153 AGGTCAGTCCTTCTTTTCATGTGA 59.897 41.667 0.00 0.00 45.67 3.58
4056 4340 9.136323 AGTCCTTCTTTTCATGTGAAATTACTT 57.864 29.630 8.82 0.00 42.83 2.24
4093 4377 5.494724 CAGGAGTTCCATGATTTTCTCTGA 58.505 41.667 0.00 0.00 38.89 3.27
4172 4457 6.916360 TTTCTTCCAGGCTCAAAATAACAT 57.084 33.333 0.00 0.00 0.00 2.71
4192 4477 0.228238 CGATCTCTTCAATCGCGTGC 59.772 55.000 5.77 0.00 39.50 5.34
4212 4497 1.672881 CGAAGGAACATTGATGGCCTC 59.327 52.381 3.32 0.00 36.22 4.70
4260 4545 7.891712 TCCACCTATGATCAATGCATAATTCAT 59.108 33.333 17.27 17.27 0.00 2.57
4448 4735 2.561478 TGGTAAGTTCTTCCAGGTGC 57.439 50.000 0.00 0.00 0.00 5.01
4689 4978 1.649321 AAGCAGGTCACAGATGAGGA 58.351 50.000 0.00 0.00 34.75 3.71
4820 5109 0.326264 TCTGGAAGCAAAGGAGAGGC 59.674 55.000 0.00 0.00 0.00 4.70
4887 5176 5.105228 CCTGAATATTGGTGGCTGAACATTT 60.105 40.000 0.00 0.00 0.00 2.32
4909 5198 2.542020 TCGAGCAGTGATGGTTTCAA 57.458 45.000 0.00 0.00 35.70 2.69
4917 5206 5.069516 AGCAGTGATGGTTTCAAGAAATTGT 59.930 36.000 0.00 0.00 35.70 2.71
5144 5458 0.729116 CGATCGAGCCAGTGCAAAAT 59.271 50.000 10.26 0.00 41.13 1.82
5150 5464 2.094894 CGAGCCAGTGCAAAATCTACAG 59.905 50.000 0.00 0.00 41.13 2.74
5298 5612 1.671328 CATGAGCAATGTCAGAGGCTG 59.329 52.381 0.00 0.00 36.59 4.85
5365 5679 3.083293 GTTGAAGAGGTCGGAGTAGAGT 58.917 50.000 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.690510 GGAGGAGAAGCCAGGCCT 60.691 66.667 8.22 0.00 40.02 5.19
60 62 1.730064 TCTTATCCAGAAAACGTGCGC 59.270 47.619 0.00 0.00 0.00 6.09
354 381 1.603678 GGCAGTGCAAAACCACATGAG 60.604 52.381 18.61 0.00 38.18 2.90
435 479 5.663106 TCAGAAATCAGCCAGAGGTACTATT 59.337 40.000 0.00 0.00 41.55 1.73
437 481 4.610333 TCAGAAATCAGCCAGAGGTACTA 58.390 43.478 0.00 0.00 41.55 1.82
464 508 4.939439 TCTTTTCCTACGTAATTCTTGGGC 59.061 41.667 0.00 0.00 0.00 5.36
475 519 5.143376 TCGGATTCTTTCTTTTCCTACGT 57.857 39.130 0.00 0.00 0.00 3.57
495 539 2.724977 TCAGCCTTACAAGACACTCG 57.275 50.000 0.00 0.00 0.00 4.18
560 604 7.250445 TCCGTACCTAAAACAAAAGTCTTTC 57.750 36.000 0.00 0.00 0.00 2.62
561 605 7.337689 AGTTCCGTACCTAAAACAAAAGTCTTT 59.662 33.333 0.00 0.00 0.00 2.52
566 610 6.037391 TGTCAGTTCCGTACCTAAAACAAAAG 59.963 38.462 0.00 0.00 0.00 2.27
676 723 8.150945 TCCTATGCCTCATCAAAAGAGTAATAC 58.849 37.037 0.00 0.00 0.00 1.89
737 787 9.511144 GAGTTAGAACCTTGAAATTTCGAAAAA 57.489 29.630 15.66 3.61 0.00 1.94
739 789 8.446599 AGAGTTAGAACCTTGAAATTTCGAAA 57.553 30.769 13.91 13.91 0.00 3.46
740 790 7.931948 AGAGAGTTAGAACCTTGAAATTTCGAA 59.068 33.333 13.34 0.00 0.00 3.71
741 791 7.442656 AGAGAGTTAGAACCTTGAAATTTCGA 58.557 34.615 13.34 10.62 0.00 3.71
742 792 7.659652 AGAGAGTTAGAACCTTGAAATTTCG 57.340 36.000 13.34 2.16 0.00 3.46
805 855 4.114015 TCTTCCAAGTGTAGACTCCTGA 57.886 45.455 0.00 0.00 0.00 3.86
814 864 5.012664 TGCTCCACTAATTCTTCCAAGTGTA 59.987 40.000 3.73 0.00 38.10 2.90
862 912 4.223320 AGTTTTACTGCATTTGGACACG 57.777 40.909 0.00 0.00 0.00 4.49
1143 1193 5.192927 GTGTTCATCATCCCCATGTTAGAA 58.807 41.667 0.00 0.00 0.00 2.10
1375 1425 8.041323 GTCTAATGGACAGAGTTTCAGGATAAA 58.959 37.037 0.00 0.00 43.94 1.40
1376 1426 7.556844 GTCTAATGGACAGAGTTTCAGGATAA 58.443 38.462 0.00 0.00 43.94 1.75
1377 1427 7.113658 GTCTAATGGACAGAGTTTCAGGATA 57.886 40.000 0.00 0.00 43.94 2.59
1405 1455 8.584157 AGCATAAACCAACATGACAAGAAAATA 58.416 29.630 0.00 0.00 0.00 1.40
1445 1495 5.710099 ACGCAAAAATGAAGGGATAGAAAGA 59.290 36.000 0.00 0.00 0.00 2.52
1459 1509 2.338228 CGATGGAACGAACGCAAAAATG 59.662 45.455 0.00 0.00 35.09 2.32
1479 1529 2.809861 AAGGGTGCACATGAGAGGCG 62.810 60.000 20.43 0.00 0.00 5.52
1575 1625 0.659427 ATTGGCATCTCATCGCAACG 59.341 50.000 0.00 0.00 0.00 4.10
1940 1992 5.644977 TCCACTCGTCCTAATATATGCAG 57.355 43.478 0.00 0.00 0.00 4.41
2195 2248 8.268850 AGTATTACCAATTCAGCTGTTGTAAG 57.731 34.615 14.67 2.33 0.00 2.34
2229 2283 7.039504 AGCACAGAACTATTGGTCAATCAAAAT 60.040 33.333 0.00 0.00 32.50 1.82
2264 2318 7.253422 CAGGTGAAAAAGGTATCATGCTTTAG 58.747 38.462 0.00 0.00 0.00 1.85
2314 2369 5.312895 TCTGCAGAAAATAAAGCACTACCA 58.687 37.500 15.67 0.00 32.87 3.25
2315 2370 5.412904 ACTCTGCAGAAAATAAAGCACTACC 59.587 40.000 18.85 0.00 32.87 3.18
2457 2529 8.433126 CCGTCTTGTAGTTTGTTTGTTCTATAG 58.567 37.037 0.00 0.00 0.00 1.31
2695 2767 9.518906 CCCCTCAAAATTTTTCTTTCAAAAATG 57.481 29.630 0.00 0.00 39.13 2.32
2711 2784 4.518278 AAAACTTTTGCCCCCTCAAAAT 57.482 36.364 2.67 0.00 42.77 1.82
2856 2929 3.829601 GAGATCCCTGTATCCGTCTGAAT 59.170 47.826 0.00 0.00 0.00 2.57
2873 2946 0.729690 GCGGCACAAAGGAAGAGATC 59.270 55.000 0.00 0.00 0.00 2.75
2874 2947 0.036732 TGCGGCACAAAGGAAGAGAT 59.963 50.000 0.00 0.00 0.00 2.75
3142 3216 5.592282 TGATTGCAAATCATACGGTTGGTAT 59.408 36.000 1.71 0.00 42.62 2.73
3243 3521 3.870633 AGTGCTTTCCTACGACCTAAG 57.129 47.619 0.00 0.00 0.00 2.18
3255 3533 6.862711 AACTACCAAGAAACTAGTGCTTTC 57.137 37.500 0.00 0.00 0.00 2.62
3264 3542 8.456471 GTGTTTTTCAGTAACTACCAAGAAACT 58.544 33.333 0.00 0.00 0.00 2.66
3313 3591 9.844790 CATTATTTTGTATCAACACACAGACAT 57.155 29.630 0.00 0.00 34.61 3.06
3341 3619 2.236893 CACCCCATTGCATAGCCTTTTT 59.763 45.455 0.00 0.00 0.00 1.94
3423 3705 4.070716 GGATCATGTGAACCATCAGATCC 58.929 47.826 4.61 0.00 42.71 3.36
3440 3722 2.101783 GGTCCATGCACAATTGGATCA 58.898 47.619 11.69 4.79 43.61 2.92
3464 3746 8.204836 ACTCCTATAAATATGTCAACTGGTCAC 58.795 37.037 0.00 0.00 0.00 3.67
3642 3926 7.814642 ACTCTCTTAATCATTTCTTGCAAGTG 58.185 34.615 25.19 16.56 0.00 3.16
3674 3958 7.819415 TCACACTTCACAGATCGATTTTCTAAT 59.181 33.333 0.00 0.00 0.00 1.73
3682 3966 4.257267 TGTTCACACTTCACAGATCGAT 57.743 40.909 0.00 0.00 0.00 3.59
3683 3967 3.726291 TGTTCACACTTCACAGATCGA 57.274 42.857 0.00 0.00 0.00 3.59
3684 3968 4.448732 TCAATGTTCACACTTCACAGATCG 59.551 41.667 0.00 0.00 0.00 3.69
3685 3969 5.468072 ACTCAATGTTCACACTTCACAGATC 59.532 40.000 0.00 0.00 0.00 2.75
3686 3970 5.371526 ACTCAATGTTCACACTTCACAGAT 58.628 37.500 0.00 0.00 0.00 2.90
3687 3971 4.769688 ACTCAATGTTCACACTTCACAGA 58.230 39.130 0.00 0.00 0.00 3.41
3688 3972 6.648310 AGATACTCAATGTTCACACTTCACAG 59.352 38.462 0.00 0.00 0.00 3.66
3689 3973 6.424812 CAGATACTCAATGTTCACACTTCACA 59.575 38.462 0.00 0.00 0.00 3.58
3690 3974 6.425114 ACAGATACTCAATGTTCACACTTCAC 59.575 38.462 0.00 0.00 0.00 3.18
3691 3975 6.424812 CACAGATACTCAATGTTCACACTTCA 59.575 38.462 0.00 0.00 0.00 3.02
3692 3976 6.128445 CCACAGATACTCAATGTTCACACTTC 60.128 42.308 0.00 0.00 0.00 3.01
3693 3977 5.702670 CCACAGATACTCAATGTTCACACTT 59.297 40.000 0.00 0.00 0.00 3.16
3694 3978 5.012046 TCCACAGATACTCAATGTTCACACT 59.988 40.000 0.00 0.00 0.00 3.55
3695 3979 5.237815 TCCACAGATACTCAATGTTCACAC 58.762 41.667 0.00 0.00 0.00 3.82
3696 3980 5.482163 TCCACAGATACTCAATGTTCACA 57.518 39.130 0.00 0.00 0.00 3.58
3697 3981 7.712639 ACATATCCACAGATACTCAATGTTCAC 59.287 37.037 0.00 0.00 37.80 3.18
3760 4044 2.413108 CGTTAAATACCACACGGTTGGC 60.413 50.000 4.53 0.00 46.31 4.52
3785 4069 7.041372 GGCTTGTGATCTTACAGTAAGTTTCAA 60.041 37.037 20.70 17.59 37.10 2.69
3879 4163 3.920412 GGATCGAAACAAATGGAAAGCAC 59.080 43.478 0.00 0.00 0.00 4.40
4048 4332 6.349611 CCTGCATTCTGCTGTACAAGTAATTT 60.350 38.462 0.00 0.00 45.31 1.82
4056 4340 1.625315 ACTCCTGCATTCTGCTGTACA 59.375 47.619 0.00 0.00 45.31 2.90
4172 4457 1.827578 CACGCGATTGAAGAGATCGA 58.172 50.000 15.93 0.00 46.93 3.59
4192 4477 1.672881 GAGGCCATCAATGTTCCTTCG 59.327 52.381 5.01 0.00 31.70 3.79
4260 4545 7.630242 AGCACAGCTTTAATATTTCTGCTAA 57.370 32.000 0.00 0.00 33.89 3.09
4294 4579 4.428294 TCATTAGAGGCAGGGATTCTTG 57.572 45.455 0.00 0.00 0.00 3.02
4492 4781 9.884465 GATATGAAATCACTAGGTAAAATGCAC 57.116 33.333 0.00 0.00 0.00 4.57
4689 4978 7.171630 ACTACCGATGAAGTTTCAGTATCTT 57.828 36.000 0.74 0.00 41.08 2.40
4755 5044 1.338337 CTCTATTCGTCGCCATCTGGT 59.662 52.381 0.00 0.00 37.57 4.00
4820 5109 0.038159 GGTTCCTCAGTCACCACTCG 60.038 60.000 0.00 0.00 0.00 4.18
4867 5156 5.999205 TCAAATGTTCAGCCACCAATATT 57.001 34.783 0.00 0.00 0.00 1.28
4887 5176 2.028203 TGAAACCATCACTGCTCGATCA 60.028 45.455 0.00 0.00 31.50 2.92
4909 5198 6.293462 GCAGGACGAGAAAAACTACAATTTCT 60.293 38.462 0.72 0.72 45.85 2.52
4917 5206 2.224185 TGCAGCAGGACGAGAAAAACTA 60.224 45.455 0.00 0.00 0.00 2.24
5030 5341 1.815817 ATGGACCGGCAAAAAGGCAC 61.816 55.000 0.00 0.00 44.47 5.01
5144 5458 5.649395 CAGATTTTTGCCAGAATCCTGTAGA 59.351 40.000 0.00 0.00 38.74 2.59
5150 5464 3.511146 TGACCAGATTTTTGCCAGAATCC 59.489 43.478 0.00 0.00 33.72 3.01
5321 5635 1.410365 CGTCACCAGAGTAGGGGATCT 60.410 57.143 0.00 0.00 44.37 2.75
5575 5889 1.505353 CGCGTTCGACCTAGACCTT 59.495 57.895 0.00 0.00 38.10 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.