Multiple sequence alignment - TraesCS2B01G395100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G395100 chr2B 100.000 3561 0 0 1 3561 560184637 560188197 0.000000e+00 6577.0
1 TraesCS2B01G395100 chr2B 92.411 224 13 4 3234 3456 234630588 234630808 2.060000e-82 316.0
2 TraesCS2B01G395100 chr2A 93.957 2350 109 19 912 3231 621035998 621038344 0.000000e+00 3522.0
3 TraesCS2B01G395100 chr2D 93.119 2209 121 18 935 3120 477992136 477994336 0.000000e+00 3208.0
4 TraesCS2B01G395100 chr2D 89.238 827 76 10 40 855 590028479 590029303 0.000000e+00 1022.0
5 TraesCS2B01G395100 chr2D 93.304 224 12 3 3233 3455 526224763 526224542 9.530000e-86 327.0
6 TraesCS2B01G395100 chr2D 91.556 225 18 1 3233 3457 558182227 558182004 3.450000e-80 309.0
7 TraesCS2B01G395100 chr2D 88.776 98 11 0 3456 3553 179125587 179125684 1.740000e-23 121.0
8 TraesCS2B01G395100 chr2D 87.879 99 12 0 3461 3559 111991162 111991260 2.250000e-22 117.0
9 TraesCS2B01G395100 chr2D 97.561 41 1 0 878 918 477990460 477990500 1.770000e-08 71.3
10 TraesCS2B01G395100 chr5D 89.123 855 73 9 42 879 423232011 423231160 0.000000e+00 1046.0
11 TraesCS2B01G395100 chr5D 85.497 855 83 23 41 880 531470216 531469388 0.000000e+00 854.0
12 TraesCS2B01G395100 chr5D 93.694 222 12 2 3234 3454 546011428 546011648 7.370000e-87 331.0
13 TraesCS2B01G395100 chr6D 89.423 832 76 5 33 855 447066639 447067467 0.000000e+00 1038.0
14 TraesCS2B01G395100 chr7D 89.372 828 69 14 41 855 478798824 478799645 0.000000e+00 1024.0
15 TraesCS2B01G395100 chr7D 86.667 105 12 2 3456 3558 583449011 583448907 8.080000e-22 115.0
16 TraesCS2B01G395100 chr7B 89.238 827 76 10 41 855 632802985 632802160 0.000000e+00 1022.0
17 TraesCS2B01G395100 chr3B 90.556 773 71 2 41 811 256361288 256360516 0.000000e+00 1022.0
18 TraesCS2B01G395100 chr3B 90.544 772 72 1 41 811 2342253 2343024 0.000000e+00 1020.0
19 TraesCS2B01G395100 chr3B 90.360 778 69 5 38 811 824305056 824304281 0.000000e+00 1016.0
20 TraesCS2B01G395100 chr3B 77.368 190 35 6 2108 2293 133385602 133385787 4.860000e-19 106.0
21 TraesCS2B01G395100 chr3B 85.556 90 13 0 2108 2197 133000497 133000586 1.050000e-15 95.3
22 TraesCS2B01G395100 chr1B 90.576 764 68 4 38 799 94009131 94009892 0.000000e+00 1009.0
23 TraesCS2B01G395100 chr1B 89.109 101 11 0 3461 3561 252969621 252969521 3.730000e-25 126.0
24 TraesCS2B01G395100 chr3D 88.688 831 82 9 35 855 528948082 528948910 0.000000e+00 1003.0
25 TraesCS2B01G395100 chr3D 92.308 221 16 1 3232 3452 520444641 520444422 2.670000e-81 313.0
26 TraesCS2B01G395100 chr3D 75.661 189 40 5 2108 2293 84885213 84885398 4.900000e-14 89.8
27 TraesCS2B01G395100 chrUn 88.164 828 82 13 41 855 224616475 224617299 0.000000e+00 972.0
28 TraesCS2B01G395100 chrUn 88.043 828 83 13 41 855 249625305 249626129 0.000000e+00 966.0
29 TraesCS2B01G395100 chrUn 83.077 130 13 6 734 855 405746832 405746960 3.760000e-20 110.0
30 TraesCS2B01G395100 chr5B 88.164 828 82 13 41 855 430191646 430190822 0.000000e+00 972.0
31 TraesCS2B01G395100 chr5B 86.739 460 49 9 405 855 430094160 430093704 5.310000e-138 501.0
32 TraesCS2B01G395100 chr5B 92.000 225 16 2 3232 3454 355402639 355402863 7.420000e-82 315.0
33 TraesCS2B01G395100 chr5B 87.879 99 12 0 3455 3553 41501947 41502045 2.250000e-22 117.0
34 TraesCS2B01G395100 chr1D 88.726 683 69 4 174 855 50711825 50712500 0.000000e+00 828.0
35 TraesCS2B01G395100 chr1D 91.964 224 15 3 3232 3454 457209241 457209462 9.600000e-81 311.0
36 TraesCS2B01G395100 chr6B 91.379 232 18 2 3232 3462 686179086 686178856 2.060000e-82 316.0
37 TraesCS2B01G395100 chr6B 87.755 98 12 0 3456 3553 320423929 320423832 8.080000e-22 115.0
38 TraesCS2B01G395100 chr7A 90.083 242 19 5 3228 3467 46891185 46891423 3.450000e-80 309.0
39 TraesCS2B01G395100 chr5A 87.500 104 13 0 3456 3559 665670555 665670658 1.740000e-23 121.0
40 TraesCS2B01G395100 chr6A 86.792 106 13 1 3456 3561 548713168 548713064 2.250000e-22 117.0
41 TraesCS2B01G395100 chr4D 85.577 104 15 0 3456 3559 488925478 488925375 3.760000e-20 110.0
42 TraesCS2B01G395100 chr3A 84.906 53 8 0 1884 1936 101608846 101608898 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G395100 chr2B 560184637 560188197 3560 False 6577.00 6577 100.000 1 3561 1 chr2B.!!$F2 3560
1 TraesCS2B01G395100 chr2A 621035998 621038344 2346 False 3522.00 3522 93.957 912 3231 1 chr2A.!!$F1 2319
2 TraesCS2B01G395100 chr2D 477990460 477994336 3876 False 1639.65 3208 95.340 878 3120 2 chr2D.!!$F4 2242
3 TraesCS2B01G395100 chr2D 590028479 590029303 824 False 1022.00 1022 89.238 40 855 1 chr2D.!!$F3 815
4 TraesCS2B01G395100 chr5D 423231160 423232011 851 True 1046.00 1046 89.123 42 879 1 chr5D.!!$R1 837
5 TraesCS2B01G395100 chr5D 531469388 531470216 828 True 854.00 854 85.497 41 880 1 chr5D.!!$R2 839
6 TraesCS2B01G395100 chr6D 447066639 447067467 828 False 1038.00 1038 89.423 33 855 1 chr6D.!!$F1 822
7 TraesCS2B01G395100 chr7D 478798824 478799645 821 False 1024.00 1024 89.372 41 855 1 chr7D.!!$F1 814
8 TraesCS2B01G395100 chr7B 632802160 632802985 825 True 1022.00 1022 89.238 41 855 1 chr7B.!!$R1 814
9 TraesCS2B01G395100 chr3B 256360516 256361288 772 True 1022.00 1022 90.556 41 811 1 chr3B.!!$R1 770
10 TraesCS2B01G395100 chr3B 2342253 2343024 771 False 1020.00 1020 90.544 41 811 1 chr3B.!!$F1 770
11 TraesCS2B01G395100 chr3B 824304281 824305056 775 True 1016.00 1016 90.360 38 811 1 chr3B.!!$R2 773
12 TraesCS2B01G395100 chr1B 94009131 94009892 761 False 1009.00 1009 90.576 38 799 1 chr1B.!!$F1 761
13 TraesCS2B01G395100 chr3D 528948082 528948910 828 False 1003.00 1003 88.688 35 855 1 chr3D.!!$F2 820
14 TraesCS2B01G395100 chrUn 224616475 224617299 824 False 972.00 972 88.164 41 855 1 chrUn.!!$F1 814
15 TraesCS2B01G395100 chrUn 249625305 249626129 824 False 966.00 966 88.043 41 855 1 chrUn.!!$F2 814
16 TraesCS2B01G395100 chr5B 430190822 430191646 824 True 972.00 972 88.164 41 855 1 chr5B.!!$R2 814
17 TraesCS2B01G395100 chr1D 50711825 50712500 675 False 828.00 828 88.726 174 855 1 chr1D.!!$F1 681


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 387 0.038526 CCCAACACGACTAAGACGCT 60.039 55.0 0.00 0.00 0.00 5.07 F
647 652 0.755698 TAGGACTGATGGCCTCGTCC 60.756 60.0 22.87 22.87 42.72 4.79 F
2076 3724 0.108992 TACATGAGAACACGGACGCC 60.109 55.0 0.00 0.00 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 3334 0.179140 GCTCTTGCAGACTCTCCTCG 60.179 60.0 0.00 0.00 39.41 4.63 R
2263 3911 1.006825 CCGAGCACGTTCACGATCAA 61.007 55.0 6.60 0.00 43.02 2.57 R
3288 4964 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.0 13.12 2.86 0.00 3.41 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.468095 AATATAAATCAGCGCGTGGAAC 57.532 40.909 8.43 0.00 0.00 3.62
22 23 2.024176 ATAAATCAGCGCGTGGAACT 57.976 45.000 8.43 0.00 31.75 3.01
23 24 1.803334 TAAATCAGCGCGTGGAACTT 58.197 45.000 8.43 6.54 31.75 2.66
24 25 0.951558 AAATCAGCGCGTGGAACTTT 59.048 45.000 8.43 1.65 31.75 2.66
25 26 1.803334 AATCAGCGCGTGGAACTTTA 58.197 45.000 8.43 0.00 31.75 1.85
26 27 1.803334 ATCAGCGCGTGGAACTTTAA 58.197 45.000 8.43 0.00 31.75 1.52
27 28 1.584175 TCAGCGCGTGGAACTTTAAA 58.416 45.000 8.43 0.00 31.75 1.52
28 29 1.262151 TCAGCGCGTGGAACTTTAAAC 59.738 47.619 8.43 0.00 31.75 2.01
29 30 1.263217 CAGCGCGTGGAACTTTAAACT 59.737 47.619 8.43 0.00 31.75 2.66
30 31 1.263217 AGCGCGTGGAACTTTAAACTG 59.737 47.619 8.43 0.00 31.75 3.16
31 32 1.670326 CGCGTGGAACTTTAAACTGC 58.330 50.000 0.00 0.00 31.75 4.40
32 33 1.263217 CGCGTGGAACTTTAAACTGCT 59.737 47.619 0.00 0.00 31.75 4.24
33 34 2.650608 GCGTGGAACTTTAAACTGCTG 58.349 47.619 0.00 0.00 31.75 4.41
34 35 2.650608 CGTGGAACTTTAAACTGCTGC 58.349 47.619 0.00 0.00 31.75 5.25
35 36 2.032799 CGTGGAACTTTAAACTGCTGCA 59.967 45.455 0.88 0.88 31.75 4.41
36 37 3.372060 GTGGAACTTTAAACTGCTGCAC 58.628 45.455 0.00 0.00 0.00 4.57
100 101 5.464965 AAGAACAAAGTACAAGTCACGTG 57.535 39.130 9.94 9.94 0.00 4.49
114 115 1.338655 TCACGTGAAGACCGACATGAA 59.661 47.619 17.62 0.00 0.00 2.57
141 142 7.992754 AACTGAAAAGATAGCAGAACATCTT 57.007 32.000 0.00 0.00 42.03 2.40
154 155 2.820059 ACATCTTCGAGCTTGACACA 57.180 45.000 2.11 0.00 0.00 3.72
321 325 1.790755 CCGTTGAACGAATCAGACCA 58.209 50.000 20.47 0.00 46.05 4.02
368 372 3.089838 CCAGATCTGGCACCCCAA 58.910 61.111 28.45 0.00 44.73 4.12
383 387 0.038526 CCCAACACGACTAAGACGCT 60.039 55.000 0.00 0.00 0.00 5.07
444 448 2.654912 GCACACGTTCCGTCTTCCG 61.655 63.158 0.00 0.00 38.32 4.30
573 577 4.457496 CACCACGAGGATGCCGCT 62.457 66.667 5.68 0.00 38.69 5.52
576 580 4.827087 CACGAGGATGCCGCTGCT 62.827 66.667 0.70 0.00 38.71 4.24
588 592 3.133464 GCTGCTGCCACGCCATTA 61.133 61.111 3.85 0.00 0.00 1.90
598 603 2.481795 GCCACGCCATTATTGCTTGAAT 60.482 45.455 0.00 0.00 30.19 2.57
647 652 0.755698 TAGGACTGATGGCCTCGTCC 60.756 60.000 22.87 22.87 42.72 4.79
649 654 2.362503 ACTGATGGCCTCGTCCGA 60.363 61.111 3.32 0.00 0.00 4.55
680 685 4.142403 CCAAAGAATCTTTATTCAGCGCCA 60.142 41.667 8.03 0.00 43.44 5.69
717 724 1.339929 AGCCAAAACGATGAACAACCC 59.660 47.619 0.00 0.00 0.00 4.11
746 753 9.650714 AAACCTAAACTACAAGGGAGTAAAAAT 57.349 29.630 0.00 0.00 37.18 1.82
753 760 7.112779 ACTACAAGGGAGTAAAAATGATCCAG 58.887 38.462 0.00 0.00 33.24 3.86
756 763 3.269381 AGGGAGTAAAAATGATCCAGGCA 59.731 43.478 0.00 0.00 33.24 4.75
767 774 1.995066 TCCAGGCATGTGGATCCGT 60.995 57.895 7.39 0.00 41.99 4.69
769 776 1.221566 CAGGCATGTGGATCCGTCA 59.778 57.895 7.39 9.53 0.00 4.35
775 782 0.914417 ATGTGGATCCGTCAACCCCT 60.914 55.000 7.39 0.00 0.00 4.79
780 787 1.123928 GATCCGTCAACCCCTCTCAT 58.876 55.000 0.00 0.00 0.00 2.90
851 868 2.361992 TCTCCTGGCGTCGGCTAA 60.362 61.111 20.29 4.42 39.81 3.09
854 871 4.530857 CCTGGCGTCGGCTAAGGG 62.531 72.222 20.29 12.25 38.52 3.95
929 1017 4.585955 ACACATGGTATACCGAGATGAC 57.414 45.455 21.59 0.00 39.43 3.06
972 2613 5.578005 TCTTCGGCAGGCTATATATACAC 57.422 43.478 0.00 0.00 0.00 2.90
1063 2711 4.617995 CGCATCCTTGTAAGCATCCAAAAA 60.618 41.667 0.00 0.00 0.00 1.94
1270 2918 1.379977 TCTGCCGGAATCGAGGTCT 60.380 57.895 5.05 0.00 39.00 3.85
1292 2940 4.276146 GATCCCGTACCCGTCCGC 62.276 72.222 0.00 0.00 0.00 5.54
1359 3007 4.722700 CCCGACTTGGTGCCCAGG 62.723 72.222 2.42 2.42 36.63 4.45
1417 3065 2.265739 GGCACTGCCGACTCATGA 59.734 61.111 3.73 0.00 39.62 3.07
1418 3066 1.375908 GGCACTGCCGACTCATGAA 60.376 57.895 3.73 0.00 39.62 2.57
1473 3121 4.539083 TGCAACACGTGGGCGAGT 62.539 61.111 21.57 0.00 43.29 4.18
1475 3123 2.279851 CAACACGTGGGCGAGTGA 60.280 61.111 21.57 0.00 40.78 3.41
1629 3277 4.162690 GTCCTGCCGCCCTTCGAT 62.163 66.667 0.00 0.00 41.67 3.59
1686 3334 1.381928 TACCGTCCTGCTCCATCGAC 61.382 60.000 0.00 0.00 0.00 4.20
1770 3418 4.968197 GAAGAACTCGAGCACGGT 57.032 55.556 13.61 0.00 40.21 4.83
1841 3489 2.842462 TGTCTCCCTGTGCCACGT 60.842 61.111 0.00 0.00 0.00 4.49
1863 3511 1.102154 CTGCTCTGGACGTCTCAGAT 58.898 55.000 26.50 0.00 40.07 2.90
2061 3709 4.894784 ACGATGTCAAGAAGTGGTTACAT 58.105 39.130 0.00 0.00 0.00 2.29
2076 3724 0.108992 TACATGAGAACACGGACGCC 60.109 55.000 0.00 0.00 0.00 5.68
2169 3817 2.359850 GTGGCGGGCTTCATGACA 60.360 61.111 0.00 0.00 0.00 3.58
2263 3911 1.689273 AGCAGTTCCTGAACGAGAAGT 59.311 47.619 4.49 0.00 45.50 3.01
2309 3957 4.778415 CTCCGTCGGCGTGACCAG 62.778 72.222 9.28 0.00 45.23 4.00
2585 4233 1.533338 GCTGCTTTCGCTCATTGATGG 60.533 52.381 0.00 0.00 36.97 3.51
2589 4237 2.357009 GCTTTCGCTCATTGATGGACAT 59.643 45.455 0.00 0.00 0.00 3.06
2597 4245 3.499338 TCATTGATGGACATATTGGGGC 58.501 45.455 0.00 0.00 0.00 5.80
2611 4259 0.106268 TGGGGCTGTTTCTTGCTTGA 60.106 50.000 0.00 0.00 0.00 3.02
2622 4270 5.535783 TGTTTCTTGCTTGATTGGAAGATCA 59.464 36.000 0.00 0.00 42.39 2.92
2633 4285 7.854557 TGATTGGAAGATCAAGACTATGTTG 57.145 36.000 0.00 0.00 33.31 3.33
2636 4288 5.559770 TGGAAGATCAAGACTATGTTGCAA 58.440 37.500 0.00 0.00 27.54 4.08
2637 4289 5.412594 TGGAAGATCAAGACTATGTTGCAAC 59.587 40.000 22.83 22.83 27.54 4.17
2639 4291 6.402983 GGAAGATCAAGACTATGTTGCAACTG 60.403 42.308 28.61 20.08 0.00 3.16
2640 4292 5.555017 AGATCAAGACTATGTTGCAACTGT 58.445 37.500 28.61 22.76 0.00 3.55
2642 4294 5.422666 TCAAGACTATGTTGCAACTGTTG 57.577 39.130 28.61 21.46 0.00 3.33
2644 4296 5.356751 TCAAGACTATGTTGCAACTGTTGTT 59.643 36.000 28.61 17.41 36.75 2.83
2646 4298 6.935741 AGACTATGTTGCAACTGTTGTTTA 57.064 33.333 28.61 7.76 33.52 2.01
2648 4300 5.519722 ACTATGTTGCAACTGTTGTTTAGC 58.480 37.500 28.61 7.53 33.52 3.09
2658 4314 3.365832 CTGTTGTTTAGCTGCAACTGTG 58.634 45.455 22.17 13.40 43.66 3.66
2692 4348 6.472686 ACTCAGTCTACAAGTCTCTTGTTT 57.527 37.500 18.02 0.25 34.11 2.83
2693 4349 7.584122 ACTCAGTCTACAAGTCTCTTGTTTA 57.416 36.000 18.02 6.51 34.11 2.01
2705 4361 2.533391 CTTGTTTAGCGCTGCCTGCC 62.533 60.000 22.90 2.19 38.78 4.85
2734 4390 0.462047 AAGATAACGAAGCCGGCAGG 60.462 55.000 31.54 19.35 40.78 4.85
2815 4471 4.974368 ACCGACAGAAAAATCACACAAA 57.026 36.364 0.00 0.00 0.00 2.83
2839 4495 2.447572 TGGCCAGTGGTGACCTCA 60.448 61.111 11.74 0.00 0.00 3.86
2860 4516 8.737168 CCTCATTGGTGTCAAATATAGAAAGA 57.263 34.615 0.00 0.00 36.36 2.52
2890 4546 0.882042 CAGACTTGTGGCAGCTCGTT 60.882 55.000 0.00 0.00 0.00 3.85
2897 4553 2.279741 TGTGGCAGCTCGTTAATGATC 58.720 47.619 0.00 0.00 0.00 2.92
2937 4593 4.222145 TGCCTACTTCTAGAACCGACAAAT 59.778 41.667 0.00 0.00 0.00 2.32
2940 4596 6.476053 GCCTACTTCTAGAACCGACAAATTAG 59.524 42.308 0.00 0.00 0.00 1.73
2941 4597 7.630082 GCCTACTTCTAGAACCGACAAATTAGA 60.630 40.741 0.00 0.00 0.00 2.10
2942 4598 8.248945 CCTACTTCTAGAACCGACAAATTAGAA 58.751 37.037 0.00 0.00 0.00 2.10
2990 4646 3.493176 CGTTCCACAGGATGATGCATAGA 60.493 47.826 0.00 0.00 39.69 1.98
3232 4908 2.762535 TTTTTCCTGCTACTCCCTCG 57.237 50.000 0.00 0.00 0.00 4.63
3233 4909 0.902531 TTTTCCTGCTACTCCCTCGG 59.097 55.000 0.00 0.00 0.00 4.63
3234 4910 0.040646 TTTCCTGCTACTCCCTCGGA 59.959 55.000 0.00 0.00 0.00 4.55
3235 4911 0.040646 TTCCTGCTACTCCCTCGGAA 59.959 55.000 0.00 0.00 0.00 4.30
3236 4912 0.040646 TCCTGCTACTCCCTCGGAAA 59.959 55.000 0.00 0.00 0.00 3.13
3237 4913 0.902531 CCTGCTACTCCCTCGGAAAA 59.097 55.000 0.00 0.00 0.00 2.29
3238 4914 1.134670 CCTGCTACTCCCTCGGAAAAG 60.135 57.143 0.00 0.00 0.00 2.27
3239 4915 1.825474 CTGCTACTCCCTCGGAAAAGA 59.175 52.381 0.00 0.00 0.00 2.52
3240 4916 2.233922 CTGCTACTCCCTCGGAAAAGAA 59.766 50.000 0.00 0.00 0.00 2.52
3241 4917 2.838202 TGCTACTCCCTCGGAAAAGAAT 59.162 45.455 0.00 0.00 0.00 2.40
3242 4918 3.263425 TGCTACTCCCTCGGAAAAGAATT 59.737 43.478 0.00 0.00 0.00 2.17
3243 4919 3.872182 GCTACTCCCTCGGAAAAGAATTC 59.128 47.826 0.00 0.00 0.00 2.17
3244 4920 4.383226 GCTACTCCCTCGGAAAAGAATTCT 60.383 45.833 0.88 0.88 0.00 2.40
3245 4921 5.163437 GCTACTCCCTCGGAAAAGAATTCTA 60.163 44.000 8.75 0.00 0.00 2.10
3246 4922 5.959583 ACTCCCTCGGAAAAGAATTCTAT 57.040 39.130 8.75 0.41 0.00 1.98
3247 4923 5.675538 ACTCCCTCGGAAAAGAATTCTATG 58.324 41.667 8.75 0.00 0.00 2.23
3248 4924 5.425539 ACTCCCTCGGAAAAGAATTCTATGA 59.574 40.000 8.75 2.08 0.00 2.15
3249 4925 5.918608 TCCCTCGGAAAAGAATTCTATGAG 58.081 41.667 8.75 10.93 0.00 2.90
3250 4926 5.661312 TCCCTCGGAAAAGAATTCTATGAGA 59.339 40.000 8.75 4.64 0.00 3.27
3251 4927 5.755861 CCCTCGGAAAAGAATTCTATGAGAC 59.244 44.000 8.75 0.00 0.00 3.36
3252 4928 5.755861 CCTCGGAAAAGAATTCTATGAGACC 59.244 44.000 8.75 6.24 0.00 3.85
3253 4929 6.294361 TCGGAAAAGAATTCTATGAGACCA 57.706 37.500 8.75 0.00 0.00 4.02
3254 4930 6.341316 TCGGAAAAGAATTCTATGAGACCAG 58.659 40.000 8.75 4.64 0.00 4.00
3255 4931 5.525378 CGGAAAAGAATTCTATGAGACCAGG 59.475 44.000 8.75 0.00 0.00 4.45
3256 4932 6.418946 GGAAAAGAATTCTATGAGACCAGGT 58.581 40.000 8.75 0.00 0.00 4.00
3257 4933 6.540551 GGAAAAGAATTCTATGAGACCAGGTC 59.459 42.308 12.25 12.25 0.00 3.85
3258 4934 6.882768 AAAGAATTCTATGAGACCAGGTCT 57.117 37.500 23.18 23.18 46.42 3.85
3266 4942 3.383162 AGACCAGGTCTCACGGATT 57.617 52.632 17.31 0.00 38.71 3.01
3267 4943 2.526888 AGACCAGGTCTCACGGATTA 57.473 50.000 17.31 0.00 38.71 1.75
3268 4944 2.379972 AGACCAGGTCTCACGGATTAG 58.620 52.381 17.31 0.00 38.71 1.73
3269 4945 0.824759 ACCAGGTCTCACGGATTAGC 59.175 55.000 0.00 0.00 0.00 3.09
3270 4946 0.824109 CCAGGTCTCACGGATTAGCA 59.176 55.000 0.00 0.00 0.00 3.49
3271 4947 1.202463 CCAGGTCTCACGGATTAGCAG 60.202 57.143 0.00 0.00 0.00 4.24
3272 4948 0.461961 AGGTCTCACGGATTAGCAGC 59.538 55.000 0.00 0.00 0.00 5.25
3273 4949 0.461961 GGTCTCACGGATTAGCAGCT 59.538 55.000 0.00 0.00 0.00 4.24
3274 4950 1.565305 GTCTCACGGATTAGCAGCTG 58.435 55.000 10.11 10.11 0.00 4.24
3275 4951 1.135139 GTCTCACGGATTAGCAGCTGA 59.865 52.381 20.43 0.00 0.00 4.26
3276 4952 1.406898 TCTCACGGATTAGCAGCTGAG 59.593 52.381 20.43 1.96 0.00 3.35
3277 4953 1.406898 CTCACGGATTAGCAGCTGAGA 59.593 52.381 20.43 0.00 0.00 3.27
3278 4954 1.135139 TCACGGATTAGCAGCTGAGAC 59.865 52.381 20.43 0.00 0.00 3.36
3279 4955 1.134995 CACGGATTAGCAGCTGAGACA 60.135 52.381 20.43 0.00 0.00 3.41
3280 4956 1.134965 ACGGATTAGCAGCTGAGACAC 60.135 52.381 20.43 5.00 0.00 3.67
3281 4957 1.134995 CGGATTAGCAGCTGAGACACA 60.135 52.381 20.43 0.00 0.00 3.72
3282 4958 2.482664 CGGATTAGCAGCTGAGACACAT 60.483 50.000 20.43 0.00 0.00 3.21
3283 4959 3.129871 GGATTAGCAGCTGAGACACATC 58.870 50.000 20.43 8.82 0.00 3.06
3284 4960 2.680312 TTAGCAGCTGAGACACATCC 57.320 50.000 20.43 0.00 0.00 3.51
3285 4961 1.857965 TAGCAGCTGAGACACATCCT 58.142 50.000 20.43 3.77 0.00 3.24
3286 4962 0.249676 AGCAGCTGAGACACATCCTG 59.750 55.000 20.43 0.00 33.71 3.86
3287 4963 0.248565 GCAGCTGAGACACATCCTGA 59.751 55.000 20.43 0.00 32.93 3.86
3288 4964 1.134461 GCAGCTGAGACACATCCTGAT 60.134 52.381 20.43 0.00 32.93 2.90
3289 4965 2.552031 CAGCTGAGACACATCCTGATG 58.448 52.381 8.42 5.60 44.15 3.07
3290 4966 1.485480 AGCTGAGACACATCCTGATGG 59.515 52.381 11.56 3.67 42.91 3.51
3301 4977 0.536724 TCCTGATGGATGACACGTGG 59.463 55.000 21.57 1.66 37.46 4.94
3302 4978 1.091771 CCTGATGGATGACACGTGGC 61.092 60.000 21.57 19.24 34.57 5.01
3303 4979 0.391528 CTGATGGATGACACGTGGCA 60.392 55.000 29.28 29.28 37.54 4.92
3305 4981 1.339920 TGATGGATGACACGTGGCATT 60.340 47.619 36.07 22.11 45.42 3.56
3306 4982 1.331756 GATGGATGACACGTGGCATTC 59.668 52.381 36.07 34.16 45.42 2.67
3307 4983 0.036022 TGGATGACACGTGGCATTCA 59.964 50.000 36.64 36.64 46.54 2.57
3308 4984 0.447801 GGATGACACGTGGCATTCAC 59.552 55.000 36.07 24.74 45.42 3.18
3309 4985 1.155889 GATGACACGTGGCATTCACA 58.844 50.000 36.07 9.07 45.42 3.58
3310 4986 1.535028 GATGACACGTGGCATTCACAA 59.465 47.619 36.07 8.22 45.42 3.33
3311 4987 1.383523 TGACACGTGGCATTCACAAA 58.616 45.000 23.03 0.00 46.36 2.83
3312 4988 1.952990 TGACACGTGGCATTCACAAAT 59.047 42.857 23.03 0.00 46.36 2.32
3313 4989 2.031245 TGACACGTGGCATTCACAAATC 60.031 45.455 23.03 3.54 46.36 2.17
3314 4990 1.952990 ACACGTGGCATTCACAAATCA 59.047 42.857 21.57 0.00 46.36 2.57
3315 4991 2.287547 ACACGTGGCATTCACAAATCAC 60.288 45.455 21.57 0.00 46.36 3.06
3316 4992 1.952990 ACGTGGCATTCACAAATCACA 59.047 42.857 0.00 0.00 46.36 3.58
3317 4993 2.360483 ACGTGGCATTCACAAATCACAA 59.640 40.909 0.00 0.00 46.36 3.33
3318 4994 3.181482 ACGTGGCATTCACAAATCACAAA 60.181 39.130 0.00 0.00 46.36 2.83
3319 4995 3.426191 CGTGGCATTCACAAATCACAAAG 59.574 43.478 0.00 0.00 46.36 2.77
3320 4996 3.184986 GTGGCATTCACAAATCACAAAGC 59.815 43.478 0.00 0.00 45.39 3.51
3321 4997 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
3322 4998 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
3323 4999 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
3324 5000 4.927425 GCATTCACAAATCACAAAGCATCT 59.073 37.500 0.00 0.00 0.00 2.90
3325 5001 6.094719 GCATTCACAAATCACAAAGCATCTA 58.905 36.000 0.00 0.00 0.00 1.98
3326 5002 6.034256 GCATTCACAAATCACAAAGCATCTAC 59.966 38.462 0.00 0.00 0.00 2.59
3327 5003 5.627499 TCACAAATCACAAAGCATCTACC 57.373 39.130 0.00 0.00 0.00 3.18
3328 5004 4.458989 TCACAAATCACAAAGCATCTACCC 59.541 41.667 0.00 0.00 0.00 3.69
3329 5005 3.763897 ACAAATCACAAAGCATCTACCCC 59.236 43.478 0.00 0.00 0.00 4.95
3330 5006 3.737559 AATCACAAAGCATCTACCCCA 57.262 42.857 0.00 0.00 0.00 4.96
3331 5007 2.489938 TCACAAAGCATCTACCCCAC 57.510 50.000 0.00 0.00 0.00 4.61
3332 5008 1.004277 TCACAAAGCATCTACCCCACC 59.996 52.381 0.00 0.00 0.00 4.61
3333 5009 0.331616 ACAAAGCATCTACCCCACCC 59.668 55.000 0.00 0.00 0.00 4.61
3334 5010 0.395724 CAAAGCATCTACCCCACCCC 60.396 60.000 0.00 0.00 0.00 4.95
3335 5011 1.580994 AAAGCATCTACCCCACCCCC 61.581 60.000 0.00 0.00 0.00 5.40
3336 5012 2.694616 GCATCTACCCCACCCCCA 60.695 66.667 0.00 0.00 0.00 4.96
3337 5013 3.056754 GCATCTACCCCACCCCCAC 62.057 68.421 0.00 0.00 0.00 4.61
3338 5014 2.043941 ATCTACCCCACCCCCACC 59.956 66.667 0.00 0.00 0.00 4.61
3339 5015 2.587774 ATCTACCCCACCCCCACCT 61.588 63.158 0.00 0.00 0.00 4.00
3340 5016 2.857998 ATCTACCCCACCCCCACCTG 62.858 65.000 0.00 0.00 0.00 4.00
3341 5017 3.543626 TACCCCACCCCCACCTGA 61.544 66.667 0.00 0.00 0.00 3.86
3342 5018 3.130153 TACCCCACCCCCACCTGAA 62.130 63.158 0.00 0.00 0.00 3.02
3343 5019 2.656269 TACCCCACCCCCACCTGAAA 62.656 60.000 0.00 0.00 0.00 2.69
3344 5020 2.557181 CCCCACCCCCACCTGAAAT 61.557 63.158 0.00 0.00 0.00 2.17
3345 5021 1.000359 CCCACCCCCACCTGAAATC 60.000 63.158 0.00 0.00 0.00 2.17
3346 5022 1.378514 CCACCCCCACCTGAAATCG 60.379 63.158 0.00 0.00 0.00 3.34
3347 5023 1.682849 CACCCCCACCTGAAATCGA 59.317 57.895 0.00 0.00 0.00 3.59
3348 5024 0.392998 CACCCCCACCTGAAATCGAG 60.393 60.000 0.00 0.00 0.00 4.04
3349 5025 1.224592 CCCCCACCTGAAATCGAGG 59.775 63.158 0.00 0.00 36.57 4.63
3350 5026 1.224592 CCCCACCTGAAATCGAGGG 59.775 63.158 0.00 0.00 34.56 4.30
3351 5027 1.224592 CCCACCTGAAATCGAGGGG 59.775 63.158 0.00 0.00 34.56 4.79
3352 5028 4.963878 CACCTGAAATCGAGGGGG 57.036 61.111 0.00 0.00 34.56 5.40
3374 5050 5.888982 GGGGGAGATTAGATACTTTGTGA 57.111 43.478 0.00 0.00 0.00 3.58
3375 5051 6.441088 GGGGGAGATTAGATACTTTGTGAT 57.559 41.667 0.00 0.00 0.00 3.06
3376 5052 6.842676 GGGGGAGATTAGATACTTTGTGATT 58.157 40.000 0.00 0.00 0.00 2.57
3377 5053 7.290813 GGGGGAGATTAGATACTTTGTGATTT 58.709 38.462 0.00 0.00 0.00 2.17
3378 5054 8.437575 GGGGGAGATTAGATACTTTGTGATTTA 58.562 37.037 0.00 0.00 0.00 1.40
3389 5065 9.586150 GATACTTTGTGATTTATGAATGCTACG 57.414 33.333 0.00 0.00 0.00 3.51
3390 5066 7.377766 ACTTTGTGATTTATGAATGCTACGT 57.622 32.000 0.00 0.00 0.00 3.57
3391 5067 7.243487 ACTTTGTGATTTATGAATGCTACGTG 58.757 34.615 0.00 0.00 0.00 4.49
3392 5068 6.735678 TTGTGATTTATGAATGCTACGTGT 57.264 33.333 0.00 0.00 0.00 4.49
3393 5069 6.344572 TGTGATTTATGAATGCTACGTGTC 57.655 37.500 0.00 0.00 0.00 3.67
3394 5070 5.872070 TGTGATTTATGAATGCTACGTGTCA 59.128 36.000 0.00 0.00 0.00 3.58
3395 5071 6.538381 TGTGATTTATGAATGCTACGTGTCAT 59.462 34.615 0.00 0.00 35.05 3.06
3396 5072 7.065894 GTGATTTATGAATGCTACGTGTCATC 58.934 38.462 0.00 0.00 32.99 2.92
3397 5073 5.984233 TTTATGAATGCTACGTGTCATCC 57.016 39.130 0.00 0.00 32.99 3.51
3398 5074 3.541996 ATGAATGCTACGTGTCATCCA 57.458 42.857 0.00 0.00 0.00 3.41
3399 5075 3.541996 TGAATGCTACGTGTCATCCAT 57.458 42.857 0.00 0.00 0.00 3.41
3400 5076 3.197265 TGAATGCTACGTGTCATCCATG 58.803 45.455 0.00 0.00 36.08 3.66
3401 5077 3.118811 TGAATGCTACGTGTCATCCATGA 60.119 43.478 0.00 0.00 34.01 3.07
3402 5078 2.584492 TGCTACGTGTCATCCATGAG 57.416 50.000 0.00 0.00 37.51 2.90
3403 5079 1.136891 TGCTACGTGTCATCCATGAGG 59.863 52.381 0.00 0.00 37.51 3.86
3404 5080 1.539065 GCTACGTGTCATCCATGAGGG 60.539 57.143 0.00 0.00 37.51 4.30
3405 5081 0.464036 TACGTGTCATCCATGAGGGC 59.536 55.000 0.00 0.00 37.51 5.19
3406 5082 1.884464 CGTGTCATCCATGAGGGCG 60.884 63.158 0.00 0.00 37.51 6.13
3407 5083 1.524621 GTGTCATCCATGAGGGCGG 60.525 63.158 0.00 0.00 37.51 6.13
3408 5084 2.111878 GTCATCCATGAGGGCGGG 59.888 66.667 0.00 0.00 37.51 6.13
3409 5085 2.366837 TCATCCATGAGGGCGGGT 60.367 61.111 0.00 0.00 36.21 5.28
3410 5086 2.111878 CATCCATGAGGGCGGGTC 59.888 66.667 0.00 0.00 36.21 4.46
3411 5087 2.040464 ATCCATGAGGGCGGGTCT 60.040 61.111 0.00 0.00 36.21 3.85
3412 5088 2.143419 ATCCATGAGGGCGGGTCTC 61.143 63.158 0.00 0.00 36.21 3.36
3413 5089 2.896677 ATCCATGAGGGCGGGTCTCA 62.897 60.000 0.00 0.00 44.19 3.27
3414 5090 2.187946 CATGAGGGCGGGTCTCAC 59.812 66.667 0.00 0.00 43.07 3.51
3415 5091 3.083997 ATGAGGGCGGGTCTCACC 61.084 66.667 0.00 0.00 43.07 4.02
3416 5092 3.625632 ATGAGGGCGGGTCTCACCT 62.626 63.158 0.00 0.00 43.07 4.00
3424 5100 1.656652 CGGGTCTCACCTGCTAATTG 58.343 55.000 0.00 0.00 37.90 2.32
3425 5101 1.066143 CGGGTCTCACCTGCTAATTGT 60.066 52.381 0.00 0.00 37.90 2.71
3426 5102 2.359900 GGGTCTCACCTGCTAATTGTG 58.640 52.381 0.00 0.00 38.64 3.33
3427 5103 2.027192 GGGTCTCACCTGCTAATTGTGA 60.027 50.000 0.00 0.00 38.64 3.58
3431 5107 3.334583 TCACCTGCTAATTGTGAGACC 57.665 47.619 0.00 0.00 34.28 3.85
3432 5108 2.906389 TCACCTGCTAATTGTGAGACCT 59.094 45.455 0.00 0.00 34.28 3.85
3433 5109 4.093743 TCACCTGCTAATTGTGAGACCTA 58.906 43.478 0.00 0.00 34.28 3.08
3434 5110 4.160439 TCACCTGCTAATTGTGAGACCTAG 59.840 45.833 0.00 0.00 34.28 3.02
3435 5111 4.081420 CACCTGCTAATTGTGAGACCTAGT 60.081 45.833 0.00 0.00 31.66 2.57
3436 5112 4.160626 ACCTGCTAATTGTGAGACCTAGTC 59.839 45.833 0.00 0.00 0.00 2.59
3437 5113 4.404073 CCTGCTAATTGTGAGACCTAGTCT 59.596 45.833 0.00 0.00 46.42 3.24
3466 5142 1.437397 TTTTTCCCTACACCCTCCGT 58.563 50.000 0.00 0.00 0.00 4.69
3467 5143 1.437397 TTTTCCCTACACCCTCCGTT 58.563 50.000 0.00 0.00 0.00 4.44
3468 5144 1.437397 TTTCCCTACACCCTCCGTTT 58.563 50.000 0.00 0.00 0.00 3.60
3469 5145 0.978907 TTCCCTACACCCTCCGTTTC 59.021 55.000 0.00 0.00 0.00 2.78
3470 5146 0.115745 TCCCTACACCCTCCGTTTCT 59.884 55.000 0.00 0.00 0.00 2.52
3471 5147 0.981943 CCCTACACCCTCCGTTTCTT 59.018 55.000 0.00 0.00 0.00 2.52
3472 5148 1.350019 CCCTACACCCTCCGTTTCTTT 59.650 52.381 0.00 0.00 0.00 2.52
3473 5149 2.568509 CCCTACACCCTCCGTTTCTTTA 59.431 50.000 0.00 0.00 0.00 1.85
3474 5150 3.199289 CCCTACACCCTCCGTTTCTTTAT 59.801 47.826 0.00 0.00 0.00 1.40
3475 5151 4.189231 CCTACACCCTCCGTTTCTTTATG 58.811 47.826 0.00 0.00 0.00 1.90
3476 5152 3.782656 ACACCCTCCGTTTCTTTATGT 57.217 42.857 0.00 0.00 0.00 2.29
3477 5153 4.895668 ACACCCTCCGTTTCTTTATGTA 57.104 40.909 0.00 0.00 0.00 2.29
3478 5154 5.231702 ACACCCTCCGTTTCTTTATGTAA 57.768 39.130 0.00 0.00 0.00 2.41
3479 5155 5.243207 ACACCCTCCGTTTCTTTATGTAAG 58.757 41.667 0.00 0.00 35.04 2.34
3480 5156 4.634443 CACCCTCCGTTTCTTTATGTAAGG 59.366 45.833 0.00 0.00 34.46 2.69
3481 5157 4.287845 ACCCTCCGTTTCTTTATGTAAGGT 59.712 41.667 0.00 0.00 34.46 3.50
3482 5158 4.634443 CCCTCCGTTTCTTTATGTAAGGTG 59.366 45.833 0.00 0.00 34.46 4.00
3483 5159 5.243207 CCTCCGTTTCTTTATGTAAGGTGT 58.757 41.667 0.00 0.00 34.46 4.16
3484 5160 6.400568 CCTCCGTTTCTTTATGTAAGGTGTA 58.599 40.000 0.00 0.00 34.46 2.90
3485 5161 7.046033 CCTCCGTTTCTTTATGTAAGGTGTAT 58.954 38.462 0.00 0.00 34.46 2.29
3486 5162 7.551617 CCTCCGTTTCTTTATGTAAGGTGTATT 59.448 37.037 0.00 0.00 34.46 1.89
3487 5163 9.590451 CTCCGTTTCTTTATGTAAGGTGTATTA 57.410 33.333 0.00 0.00 34.46 0.98
3499 5175 7.808672 TGTAAGGTGTATTATTTTTGACACGG 58.191 34.615 0.00 0.00 42.50 4.94
3500 5176 6.887626 AAGGTGTATTATTTTTGACACGGT 57.112 33.333 0.00 0.00 42.50 4.83
3501 5177 6.249035 AGGTGTATTATTTTTGACACGGTG 57.751 37.500 6.58 6.58 42.50 4.94
3502 5178 5.998981 AGGTGTATTATTTTTGACACGGTGA 59.001 36.000 16.29 0.00 42.50 4.02
3503 5179 6.657541 AGGTGTATTATTTTTGACACGGTGAT 59.342 34.615 16.29 0.00 42.50 3.06
3504 5180 6.964934 GGTGTATTATTTTTGACACGGTGATC 59.035 38.462 16.29 9.19 42.50 2.92
3505 5181 7.361371 GGTGTATTATTTTTGACACGGTGATCA 60.361 37.037 16.29 11.66 42.50 2.92
3506 5182 8.018520 GTGTATTATTTTTGACACGGTGATCAA 58.981 33.333 16.29 16.53 33.50 2.57
3507 5183 8.233868 TGTATTATTTTTGACACGGTGATCAAG 58.766 33.333 16.29 0.00 36.26 3.02
3508 5184 6.627395 TTATTTTTGACACGGTGATCAAGT 57.373 33.333 16.29 11.93 36.26 3.16
3509 5185 4.545823 TTTTTGACACGGTGATCAAGTC 57.454 40.909 16.29 4.51 36.26 3.01
3510 5186 2.900716 TTGACACGGTGATCAAGTCA 57.099 45.000 16.29 14.06 37.43 3.41
3525 5201 8.675705 TGATCAAGTCACACAATTTTAGAGAA 57.324 30.769 0.00 0.00 0.00 2.87
3526 5202 8.777413 TGATCAAGTCACACAATTTTAGAGAAG 58.223 33.333 0.00 0.00 0.00 2.85
3527 5203 8.682936 ATCAAGTCACACAATTTTAGAGAAGT 57.317 30.769 0.00 0.00 0.00 3.01
3528 5204 8.506168 TCAAGTCACACAATTTTAGAGAAGTT 57.494 30.769 0.00 0.00 0.00 2.66
3529 5205 9.607988 TCAAGTCACACAATTTTAGAGAAGTTA 57.392 29.630 0.00 0.00 0.00 2.24
3532 5208 9.778741 AGTCACACAATTTTAGAGAAGTTATGA 57.221 29.630 0.00 0.00 0.00 2.15
3533 5209 9.813080 GTCACACAATTTTAGAGAAGTTATGAC 57.187 33.333 0.00 0.00 0.00 3.06
3534 5210 8.708742 TCACACAATTTTAGAGAAGTTATGACG 58.291 33.333 0.00 0.00 0.00 4.35
3535 5211 8.708742 CACACAATTTTAGAGAAGTTATGACGA 58.291 33.333 0.00 0.00 0.00 4.20
3536 5212 9.268268 ACACAATTTTAGAGAAGTTATGACGAA 57.732 29.630 0.00 0.00 0.00 3.85
3543 5219 8.937634 TTAGAGAAGTTATGACGAAATTACCC 57.062 34.615 0.00 0.00 0.00 3.69
3544 5220 7.184067 AGAGAAGTTATGACGAAATTACCCT 57.816 36.000 0.00 0.00 0.00 4.34
3545 5221 7.621796 AGAGAAGTTATGACGAAATTACCCTT 58.378 34.615 0.00 0.00 0.00 3.95
3546 5222 7.549488 AGAGAAGTTATGACGAAATTACCCTTG 59.451 37.037 0.00 0.00 0.00 3.61
3547 5223 6.598064 AGAAGTTATGACGAAATTACCCTTGG 59.402 38.462 0.00 0.00 0.00 3.61
3548 5224 6.057321 AGTTATGACGAAATTACCCTTGGA 57.943 37.500 0.00 0.00 0.00 3.53
3549 5225 6.478129 AGTTATGACGAAATTACCCTTGGAA 58.522 36.000 0.00 0.00 0.00 3.53
3550 5226 6.943718 AGTTATGACGAAATTACCCTTGGAAA 59.056 34.615 0.00 0.00 0.00 3.13
3551 5227 7.449086 AGTTATGACGAAATTACCCTTGGAAAA 59.551 33.333 0.00 0.00 0.00 2.29
3552 5228 6.850752 ATGACGAAATTACCCTTGGAAAAT 57.149 33.333 0.00 0.00 0.00 1.82
3553 5229 6.262193 TGACGAAATTACCCTTGGAAAATC 57.738 37.500 0.00 0.00 0.00 2.17
3554 5230 6.007703 TGACGAAATTACCCTTGGAAAATCT 58.992 36.000 0.00 0.00 0.00 2.40
3555 5231 6.072175 TGACGAAATTACCCTTGGAAAATCTG 60.072 38.462 0.00 0.00 0.00 2.90
3556 5232 5.773176 ACGAAATTACCCTTGGAAAATCTGT 59.227 36.000 0.00 0.00 0.00 3.41
3557 5233 6.266786 ACGAAATTACCCTTGGAAAATCTGTT 59.733 34.615 0.00 0.00 0.00 3.16
3558 5234 6.586082 CGAAATTACCCTTGGAAAATCTGTTG 59.414 38.462 0.00 0.00 0.00 3.33
3559 5235 4.864704 TTACCCTTGGAAAATCTGTTGC 57.135 40.909 0.00 0.00 0.00 4.17
3560 5236 2.962859 ACCCTTGGAAAATCTGTTGCT 58.037 42.857 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.803334 TAAAGTTCCACGCGCTGATT 58.197 45.000 5.73 0.00 0.00 2.57
7 8 1.803334 TTAAAGTTCCACGCGCTGAT 58.197 45.000 5.73 0.00 0.00 2.90
8 9 1.262151 GTTTAAAGTTCCACGCGCTGA 59.738 47.619 5.73 0.00 0.00 4.26
9 10 1.263217 AGTTTAAAGTTCCACGCGCTG 59.737 47.619 5.73 3.55 0.00 5.18
10 11 1.263217 CAGTTTAAAGTTCCACGCGCT 59.737 47.619 5.73 0.00 0.00 5.92
11 12 1.670326 CAGTTTAAAGTTCCACGCGC 58.330 50.000 5.73 0.00 0.00 6.86
12 13 1.263217 AGCAGTTTAAAGTTCCACGCG 59.737 47.619 3.53 3.53 0.00 6.01
13 14 2.650608 CAGCAGTTTAAAGTTCCACGC 58.349 47.619 0.00 0.00 0.00 5.34
14 15 2.032799 TGCAGCAGTTTAAAGTTCCACG 59.967 45.455 0.00 0.00 0.00 4.94
15 16 3.181491 TGTGCAGCAGTTTAAAGTTCCAC 60.181 43.478 0.00 0.13 0.00 4.02
16 17 3.020274 TGTGCAGCAGTTTAAAGTTCCA 58.980 40.909 0.00 0.00 0.00 3.53
17 18 3.181491 TGTGTGCAGCAGTTTAAAGTTCC 60.181 43.478 0.00 0.00 0.00 3.62
18 19 4.027572 TGTGTGCAGCAGTTTAAAGTTC 57.972 40.909 0.00 0.00 0.00 3.01
19 20 4.654091 ATGTGTGCAGCAGTTTAAAGTT 57.346 36.364 0.00 0.00 0.00 2.66
20 21 4.654091 AATGTGTGCAGCAGTTTAAAGT 57.346 36.364 0.00 0.00 0.00 2.66
21 22 5.971895 AAAATGTGTGCAGCAGTTTAAAG 57.028 34.783 12.87 0.00 33.28 1.85
58 59 7.227314 TGTTCTTTATGATATGCATGAGACACC 59.773 37.037 10.16 0.00 37.87 4.16
114 115 8.854117 AGATGTTCTGCTATCTTTTCAGTTTTT 58.146 29.630 0.00 0.00 29.64 1.94
141 142 1.495584 GGCGTTTGTGTCAAGCTCGA 61.496 55.000 0.00 0.00 0.00 4.04
368 372 1.068472 CCTTCAGCGTCTTAGTCGTGT 60.068 52.381 0.68 0.00 0.00 4.49
383 387 2.026262 GCAGGTATGGTTTCCTCCTTCA 60.026 50.000 0.00 0.00 30.91 3.02
444 448 0.872021 GGTCTGCATCGACGTCATCC 60.872 60.000 17.16 0.97 34.75 3.51
449 453 0.037326 ATTGTGGTCTGCATCGACGT 60.037 50.000 0.00 0.00 34.75 4.34
573 577 1.808546 CAATAATGGCGTGGCAGCA 59.191 52.632 1.74 0.00 39.27 4.41
576 580 0.173029 CAAGCAATAATGGCGTGGCA 59.827 50.000 0.00 0.00 37.15 4.92
588 592 6.899393 TGAAAACCAGTCTATTCAAGCAAT 57.101 33.333 0.00 0.00 0.00 3.56
598 603 5.261216 GGGATGGATTTGAAAACCAGTCTA 58.739 41.667 12.47 0.00 37.12 2.59
647 652 8.443953 AATAAAGATTCTTTGGATCCTTCTCG 57.556 34.615 19.60 0.00 0.00 4.04
649 654 9.406113 CTGAATAAAGATTCTTTGGATCCTTCT 57.594 33.333 19.60 3.05 41.87 2.85
703 708 3.449377 AGGTTTTTGGGTTGTTCATCGTT 59.551 39.130 0.00 0.00 0.00 3.85
717 724 6.954487 ACTCCCTTGTAGTTTAGGTTTTTG 57.046 37.500 0.00 0.00 0.00 2.44
753 760 1.376609 GGTTGACGGATCCACATGCC 61.377 60.000 13.41 12.03 0.00 4.40
756 763 0.914417 AGGGGTTGACGGATCCACAT 60.914 55.000 13.41 0.00 0.00 3.21
767 774 0.252057 TCGGTGATGAGAGGGGTTGA 60.252 55.000 0.00 0.00 0.00 3.18
769 776 1.605058 CGTCGGTGATGAGAGGGGTT 61.605 60.000 0.00 0.00 0.00 4.11
775 782 1.366854 CTCGGTCGTCGGTGATGAGA 61.367 60.000 0.00 0.00 39.77 3.27
780 787 2.458610 CGATCTCGGTCGTCGGTGA 61.459 63.158 0.00 0.00 39.77 4.02
799 806 1.756950 CGTCCTCCCCCTTCATCGA 60.757 63.158 0.00 0.00 0.00 3.59
851 868 1.368268 TTTCTTTGGTCCCTGGCCCT 61.368 55.000 0.00 0.00 0.00 5.19
854 871 1.269569 CGTTTTTCTTTGGTCCCTGGC 60.270 52.381 0.00 0.00 0.00 4.85
855 872 2.303175 TCGTTTTTCTTTGGTCCCTGG 58.697 47.619 0.00 0.00 0.00 4.45
857 874 4.072839 GAGATCGTTTTTCTTTGGTCCCT 58.927 43.478 0.00 0.00 0.00 4.20
858 875 3.190744 GGAGATCGTTTTTCTTTGGTCCC 59.809 47.826 0.00 0.00 0.00 4.46
860 877 4.613850 GCAGGAGATCGTTTTTCTTTGGTC 60.614 45.833 0.00 0.00 0.00 4.02
861 878 3.253432 GCAGGAGATCGTTTTTCTTTGGT 59.747 43.478 0.00 0.00 0.00 3.67
862 879 3.253188 TGCAGGAGATCGTTTTTCTTTGG 59.747 43.478 0.00 0.00 0.00 3.28
864 881 3.882888 TGTGCAGGAGATCGTTTTTCTTT 59.117 39.130 0.00 0.00 0.00 2.52
865 882 3.251004 GTGTGCAGGAGATCGTTTTTCTT 59.749 43.478 0.00 0.00 0.00 2.52
921 1009 5.312120 ACTGGTAAACTGTAGTCATCTCG 57.688 43.478 0.00 0.00 0.00 4.04
1063 2711 3.083997 GGACAGGGTCGCCTCCAT 61.084 66.667 0.00 0.00 32.65 3.41
1249 2897 1.258445 ACCTCGATTCCGGCAGAGTT 61.258 55.000 0.00 0.00 36.24 3.01
1260 2908 1.033574 GGATCACGGAGACCTCGATT 58.966 55.000 0.00 0.00 0.00 3.34
1270 2918 2.829914 CGGGTACGGGATCACGGA 60.830 66.667 23.42 11.33 38.39 4.69
1359 3007 2.654912 CGTGGTGGCGTCGAAGAAC 61.655 63.158 1.37 0.00 39.69 3.01
1473 3121 4.419939 AGCTCACGCGCGATGTCA 62.420 61.111 39.36 14.26 42.32 3.58
1496 3144 2.613977 CCTTGGAAGATATAGCAGGGCG 60.614 54.545 0.00 0.00 0.00 6.13
1629 3277 1.667830 CCTCCTCGCGAACTTGCAA 60.668 57.895 11.33 0.00 34.15 4.08
1686 3334 0.179140 GCTCTTGCAGACTCTCCTCG 60.179 60.000 0.00 0.00 39.41 4.63
1821 3469 2.930019 TGGCACAGGGAGACAGGG 60.930 66.667 0.00 0.00 0.00 4.45
1841 3489 2.601666 AGACGTCCAGAGCAGGCA 60.602 61.111 13.01 0.00 0.00 4.75
2086 3734 3.560251 AAGGCACTGGCTGTCCGT 61.560 61.111 5.76 0.00 40.86 4.69
2169 3817 4.101448 GAGCCCCATCCGCAGTGT 62.101 66.667 0.00 0.00 0.00 3.55
2263 3911 1.006825 CCGAGCACGTTCACGATCAA 61.007 55.000 6.60 0.00 43.02 2.57
2355 4003 1.141881 CTGTTCCATCCCGACCTCG 59.858 63.158 0.00 0.00 39.44 4.63
2585 4233 3.429410 GCAAGAAACAGCCCCAATATGTC 60.429 47.826 0.00 0.00 0.00 3.06
2589 4237 2.562298 CAAGCAAGAAACAGCCCCAATA 59.438 45.455 0.00 0.00 0.00 1.90
2597 4245 5.443185 TCTTCCAATCAAGCAAGAAACAG 57.557 39.130 0.00 0.00 0.00 3.16
2611 4259 6.182627 TGCAACATAGTCTTGATCTTCCAAT 58.817 36.000 0.00 0.00 0.00 3.16
2622 4270 5.835113 AACAACAGTTGCAACATAGTCTT 57.165 34.783 30.11 16.03 0.00 3.01
2626 4278 5.626543 CAGCTAAACAACAGTTGCAACATAG 59.373 40.000 30.11 20.82 0.00 2.23
2628 4280 4.362279 CAGCTAAACAACAGTTGCAACAT 58.638 39.130 30.11 15.84 0.00 2.71
2629 4281 3.768406 CAGCTAAACAACAGTTGCAACA 58.232 40.909 30.11 7.06 0.00 3.33
2630 4282 2.535574 GCAGCTAAACAACAGTTGCAAC 59.464 45.455 22.17 22.17 46.06 4.17
2631 4283 2.808244 GCAGCTAAACAACAGTTGCAA 58.192 42.857 13.56 0.00 46.06 4.08
2632 4284 2.490328 GCAGCTAAACAACAGTTGCA 57.510 45.000 13.56 0.00 46.06 4.08
2633 4285 2.490328 TGCAGCTAAACAACAGTTGC 57.510 45.000 13.56 1.28 46.71 4.17
2636 4288 3.016736 ACAGTTGCAGCTAAACAACAGT 58.983 40.909 21.58 18.13 46.79 3.55
2637 4289 3.181497 ACACAGTTGCAGCTAAACAACAG 60.181 43.478 21.58 17.65 46.79 3.16
2639 4291 3.065371 AGACACAGTTGCAGCTAAACAAC 59.935 43.478 15.17 15.17 45.15 3.32
2640 4292 3.278574 AGACACAGTTGCAGCTAAACAA 58.721 40.909 1.52 3.54 0.00 2.83
2642 4294 2.872245 TGAGACACAGTTGCAGCTAAAC 59.128 45.455 1.52 3.75 0.00 2.01
2644 4296 2.908688 TGAGACACAGTTGCAGCTAA 57.091 45.000 1.52 0.00 0.00 3.09
2646 4298 1.520494 CATGAGACACAGTTGCAGCT 58.480 50.000 0.00 0.00 0.00 4.24
2648 4300 0.520404 GGCATGAGACACAGTTGCAG 59.480 55.000 0.00 0.00 36.55 4.41
2658 4314 2.758736 AGACTGAGTTGGCATGAGAC 57.241 50.000 0.00 0.00 0.00 3.36
2734 4390 5.818136 TGCTTATTCAAATGGTAGAGCAC 57.182 39.130 0.00 0.00 34.33 4.40
2815 4471 0.478072 TCACCACTGGCCACAAATCT 59.522 50.000 0.00 0.00 0.00 2.40
2860 4516 6.183360 GCTGCCACAAGTCTGATGTATATTTT 60.183 38.462 0.00 0.00 0.00 1.82
2864 4520 3.452264 AGCTGCCACAAGTCTGATGTATA 59.548 43.478 0.00 0.00 0.00 1.47
2875 4531 2.076100 TCATTAACGAGCTGCCACAAG 58.924 47.619 0.00 0.00 0.00 3.16
2890 4546 6.252599 AGTAGCCAATCTTGTGGATCATTA 57.747 37.500 0.00 0.00 41.65 1.90
2897 4553 2.927553 GCAAGTAGCCAATCTTGTGG 57.072 50.000 0.00 0.00 41.83 4.17
2937 4593 8.480133 AAGGAGAGAAAACTAGACACTTCTAA 57.520 34.615 0.00 0.00 33.73 2.10
2940 4596 6.160684 GGAAGGAGAGAAAACTAGACACTTC 58.839 44.000 0.00 0.00 0.00 3.01
2941 4597 5.602978 TGGAAGGAGAGAAAACTAGACACTT 59.397 40.000 0.00 0.00 0.00 3.16
2942 4598 5.148502 TGGAAGGAGAGAAAACTAGACACT 58.851 41.667 0.00 0.00 0.00 3.55
2990 4646 4.284178 AGTCTTCAAATGCCCATTGCTAT 58.716 39.130 0.00 0.00 42.00 2.97
3144 4820 8.704849 TTCCTAAAATTCTGACAGGATCAAAA 57.295 30.769 1.81 0.00 36.69 2.44
3217 4893 0.040646 TTTCCGAGGGAGTAGCAGGA 59.959 55.000 0.00 0.00 31.21 3.86
3231 4907 5.525378 CCTGGTCTCATAGAATTCTTTTCCG 59.475 44.000 14.36 0.00 0.00 4.30
3232 4908 6.418946 ACCTGGTCTCATAGAATTCTTTTCC 58.581 40.000 14.36 8.65 0.00 3.13
3233 4909 7.334858 AGACCTGGTCTCATAGAATTCTTTTC 58.665 38.462 23.49 0.00 38.71 2.29
3234 4910 7.264294 AGACCTGGTCTCATAGAATTCTTTT 57.736 36.000 23.49 0.00 38.71 2.27
3235 4911 6.882768 AGACCTGGTCTCATAGAATTCTTT 57.117 37.500 23.49 2.41 38.71 2.52
3248 4924 2.379972 CTAATCCGTGAGACCTGGTCT 58.620 52.381 28.70 28.70 46.42 3.85
3249 4925 1.202428 GCTAATCCGTGAGACCTGGTC 60.202 57.143 19.20 19.20 0.00 4.02
3250 4926 0.824759 GCTAATCCGTGAGACCTGGT 59.175 55.000 0.00 0.00 0.00 4.00
3251 4927 0.824109 TGCTAATCCGTGAGACCTGG 59.176 55.000 0.00 0.00 0.00 4.45
3252 4928 1.804372 GCTGCTAATCCGTGAGACCTG 60.804 57.143 0.00 0.00 0.00 4.00
3253 4929 0.461961 GCTGCTAATCCGTGAGACCT 59.538 55.000 0.00 0.00 0.00 3.85
3254 4930 0.461961 AGCTGCTAATCCGTGAGACC 59.538 55.000 0.00 0.00 0.00 3.85
3255 4931 1.135139 TCAGCTGCTAATCCGTGAGAC 59.865 52.381 9.47 0.00 0.00 3.36
3256 4932 1.406898 CTCAGCTGCTAATCCGTGAGA 59.593 52.381 9.47 0.00 34.57 3.27
3257 4933 1.406898 TCTCAGCTGCTAATCCGTGAG 59.593 52.381 9.47 4.09 34.06 3.51
3258 4934 1.135139 GTCTCAGCTGCTAATCCGTGA 59.865 52.381 9.47 0.00 0.00 4.35
3259 4935 1.134995 TGTCTCAGCTGCTAATCCGTG 60.135 52.381 9.47 0.00 0.00 4.94
3260 4936 1.134965 GTGTCTCAGCTGCTAATCCGT 60.135 52.381 9.47 0.00 0.00 4.69
3261 4937 1.134995 TGTGTCTCAGCTGCTAATCCG 60.135 52.381 9.47 0.00 0.00 4.18
3262 4938 2.680312 TGTGTCTCAGCTGCTAATCC 57.320 50.000 9.47 0.00 0.00 3.01
3263 4939 3.129871 GGATGTGTCTCAGCTGCTAATC 58.870 50.000 9.47 6.04 32.48 1.75
3264 4940 2.770802 AGGATGTGTCTCAGCTGCTAAT 59.229 45.455 9.47 0.00 32.48 1.73
3265 4941 2.093816 CAGGATGTGTCTCAGCTGCTAA 60.094 50.000 9.47 0.00 32.48 3.09
3266 4942 1.479730 CAGGATGTGTCTCAGCTGCTA 59.520 52.381 9.47 0.00 32.48 3.49
3267 4943 0.249676 CAGGATGTGTCTCAGCTGCT 59.750 55.000 9.47 0.00 32.48 4.24
3268 4944 0.248565 TCAGGATGTGTCTCAGCTGC 59.751 55.000 9.47 0.00 37.40 5.25
3269 4945 2.552031 CATCAGGATGTGTCTCAGCTG 58.448 52.381 7.63 7.63 37.40 4.24
3270 4946 1.485480 CCATCAGGATGTGTCTCAGCT 59.515 52.381 8.35 0.00 37.11 4.24
3271 4947 1.483827 TCCATCAGGATGTGTCTCAGC 59.516 52.381 8.35 0.00 39.61 4.26
3283 4959 1.091771 GCCACGTGTCATCCATCAGG 61.092 60.000 15.65 0.00 0.00 3.86
3284 4960 0.391528 TGCCACGTGTCATCCATCAG 60.392 55.000 15.65 0.00 0.00 2.90
3285 4961 0.252761 ATGCCACGTGTCATCCATCA 59.747 50.000 15.65 0.00 0.00 3.07
3286 4962 1.331756 GAATGCCACGTGTCATCCATC 59.668 52.381 13.12 3.25 0.00 3.51
3287 4963 1.339920 TGAATGCCACGTGTCATCCAT 60.340 47.619 13.12 0.00 0.00 3.41
3288 4964 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41
3289 4965 0.447801 GTGAATGCCACGTGTCATCC 59.552 55.000 13.12 0.00 35.86 3.51
3290 4966 3.975992 GTGAATGCCACGTGTCATC 57.024 52.632 13.12 7.23 35.86 2.92
3298 4974 3.184986 GCTTTGTGATTTGTGAATGCCAC 59.815 43.478 0.00 0.00 45.88 5.01
3299 4975 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
3300 4976 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
3301 4977 4.927425 AGATGCTTTGTGATTTGTGAATGC 59.073 37.500 0.00 0.00 0.00 3.56
3302 4978 6.529125 GGTAGATGCTTTGTGATTTGTGAATG 59.471 38.462 0.00 0.00 0.00 2.67
3303 4979 6.350445 GGGTAGATGCTTTGTGATTTGTGAAT 60.350 38.462 0.00 0.00 0.00 2.57
3304 4980 5.048083 GGGTAGATGCTTTGTGATTTGTGAA 60.048 40.000 0.00 0.00 0.00 3.18
3305 4981 4.458989 GGGTAGATGCTTTGTGATTTGTGA 59.541 41.667 0.00 0.00 0.00 3.58
3306 4982 4.380867 GGGGTAGATGCTTTGTGATTTGTG 60.381 45.833 0.00 0.00 0.00 3.33
3307 4983 3.763897 GGGGTAGATGCTTTGTGATTTGT 59.236 43.478 0.00 0.00 0.00 2.83
3308 4984 3.763360 TGGGGTAGATGCTTTGTGATTTG 59.237 43.478 0.00 0.00 0.00 2.32
3309 4985 3.763897 GTGGGGTAGATGCTTTGTGATTT 59.236 43.478 0.00 0.00 0.00 2.17
3310 4986 3.356290 GTGGGGTAGATGCTTTGTGATT 58.644 45.455 0.00 0.00 0.00 2.57
3311 4987 2.357154 GGTGGGGTAGATGCTTTGTGAT 60.357 50.000 0.00 0.00 0.00 3.06
3312 4988 1.004277 GGTGGGGTAGATGCTTTGTGA 59.996 52.381 0.00 0.00 0.00 3.58
3313 4989 1.463674 GGTGGGGTAGATGCTTTGTG 58.536 55.000 0.00 0.00 0.00 3.33
3314 4990 0.331616 GGGTGGGGTAGATGCTTTGT 59.668 55.000 0.00 0.00 0.00 2.83
3315 4991 0.395724 GGGGTGGGGTAGATGCTTTG 60.396 60.000 0.00 0.00 0.00 2.77
3316 4992 1.580994 GGGGGTGGGGTAGATGCTTT 61.581 60.000 0.00 0.00 0.00 3.51
3317 4993 2.006991 GGGGGTGGGGTAGATGCTT 61.007 63.158 0.00 0.00 0.00 3.91
3318 4994 2.368329 GGGGGTGGGGTAGATGCT 60.368 66.667 0.00 0.00 0.00 3.79
3319 4995 2.694616 TGGGGGTGGGGTAGATGC 60.695 66.667 0.00 0.00 0.00 3.91
3320 4996 2.383601 GGTGGGGGTGGGGTAGATG 61.384 68.421 0.00 0.00 0.00 2.90
3321 4997 2.043941 GGTGGGGGTGGGGTAGAT 59.956 66.667 0.00 0.00 0.00 1.98
3322 4998 3.213245 AGGTGGGGGTGGGGTAGA 61.213 66.667 0.00 0.00 0.00 2.59
3323 4999 3.015145 CAGGTGGGGGTGGGGTAG 61.015 72.222 0.00 0.00 0.00 3.18
3324 5000 2.656269 TTTCAGGTGGGGGTGGGGTA 62.656 60.000 0.00 0.00 0.00 3.69
3325 5001 4.542627 TTCAGGTGGGGGTGGGGT 62.543 66.667 0.00 0.00 0.00 4.95
3326 5002 2.514516 GATTTCAGGTGGGGGTGGGG 62.515 65.000 0.00 0.00 0.00 4.96
3327 5003 1.000359 GATTTCAGGTGGGGGTGGG 60.000 63.158 0.00 0.00 0.00 4.61
3328 5004 1.378514 CGATTTCAGGTGGGGGTGG 60.379 63.158 0.00 0.00 0.00 4.61
3329 5005 0.392998 CTCGATTTCAGGTGGGGGTG 60.393 60.000 0.00 0.00 0.00 4.61
3330 5006 1.562672 CCTCGATTTCAGGTGGGGGT 61.563 60.000 0.00 0.00 0.00 4.95
3331 5007 1.224592 CCTCGATTTCAGGTGGGGG 59.775 63.158 0.00 0.00 0.00 5.40
3332 5008 1.224592 CCCTCGATTTCAGGTGGGG 59.775 63.158 0.00 0.00 0.00 4.96
3333 5009 1.224592 CCCCTCGATTTCAGGTGGG 59.775 63.158 0.00 0.00 34.68 4.61
3334 5010 1.224592 CCCCCTCGATTTCAGGTGG 59.775 63.158 0.00 0.00 0.00 4.61
3335 5011 4.963878 CCCCCTCGATTTCAGGTG 57.036 61.111 0.00 0.00 0.00 4.00
3352 5028 5.888982 TCACAAAGTATCTAATCTCCCCC 57.111 43.478 0.00 0.00 0.00 5.40
3363 5039 9.586150 CGTAGCATTCATAAATCACAAAGTATC 57.414 33.333 0.00 0.00 0.00 2.24
3364 5040 9.109393 ACGTAGCATTCATAAATCACAAAGTAT 57.891 29.630 0.00 0.00 0.00 2.12
3365 5041 8.387354 CACGTAGCATTCATAAATCACAAAGTA 58.613 33.333 0.00 0.00 0.00 2.24
3366 5042 7.094805 ACACGTAGCATTCATAAATCACAAAGT 60.095 33.333 0.00 0.00 0.00 2.66
3367 5043 7.243487 ACACGTAGCATTCATAAATCACAAAG 58.757 34.615 0.00 0.00 0.00 2.77
3368 5044 7.095017 TGACACGTAGCATTCATAAATCACAAA 60.095 33.333 0.00 0.00 0.00 2.83
3369 5045 6.370166 TGACACGTAGCATTCATAAATCACAA 59.630 34.615 0.00 0.00 0.00 3.33
3370 5046 5.872070 TGACACGTAGCATTCATAAATCACA 59.128 36.000 0.00 0.00 0.00 3.58
3371 5047 6.344572 TGACACGTAGCATTCATAAATCAC 57.655 37.500 0.00 0.00 0.00 3.06
3372 5048 6.202762 GGATGACACGTAGCATTCATAAATCA 59.797 38.462 4.12 0.00 0.00 2.57
3373 5049 6.202762 TGGATGACACGTAGCATTCATAAATC 59.797 38.462 6.68 0.00 0.00 2.17
3374 5050 6.054941 TGGATGACACGTAGCATTCATAAAT 58.945 36.000 6.68 0.00 0.00 1.40
3375 5051 5.423886 TGGATGACACGTAGCATTCATAAA 58.576 37.500 6.68 0.00 0.00 1.40
3376 5052 5.017294 TGGATGACACGTAGCATTCATAA 57.983 39.130 6.68 0.00 0.00 1.90
3377 5053 4.664150 TGGATGACACGTAGCATTCATA 57.336 40.909 6.68 0.00 0.00 2.15
3378 5054 3.541996 TGGATGACACGTAGCATTCAT 57.458 42.857 6.68 2.12 0.00 2.57
3379 5055 3.118811 TCATGGATGACACGTAGCATTCA 60.119 43.478 11.79 11.79 34.69 2.57
3380 5056 3.457234 TCATGGATGACACGTAGCATTC 58.543 45.455 4.12 3.06 0.00 2.67
3381 5057 3.461061 CTCATGGATGACACGTAGCATT 58.539 45.455 4.12 0.00 32.50 3.56
3382 5058 2.224137 CCTCATGGATGACACGTAGCAT 60.224 50.000 2.33 2.33 34.57 3.79
3383 5059 1.136891 CCTCATGGATGACACGTAGCA 59.863 52.381 0.00 0.00 34.57 3.49
3384 5060 1.539065 CCCTCATGGATGACACGTAGC 60.539 57.143 0.00 0.00 35.39 3.58
3385 5061 1.539065 GCCCTCATGGATGACACGTAG 60.539 57.143 0.00 0.00 35.39 3.51
3386 5062 0.464036 GCCCTCATGGATGACACGTA 59.536 55.000 0.00 0.00 35.39 3.57
3387 5063 1.221840 GCCCTCATGGATGACACGT 59.778 57.895 0.00 0.00 35.39 4.49
3388 5064 1.884464 CGCCCTCATGGATGACACG 60.884 63.158 0.00 0.00 35.39 4.49
3389 5065 1.524621 CCGCCCTCATGGATGACAC 60.525 63.158 0.00 0.00 35.39 3.67
3390 5066 2.745308 CCCGCCCTCATGGATGACA 61.745 63.158 0.00 0.00 35.39 3.58
3391 5067 2.111878 CCCGCCCTCATGGATGAC 59.888 66.667 0.00 0.00 35.39 3.06
3392 5068 2.366837 ACCCGCCCTCATGGATGA 60.367 61.111 0.00 0.00 35.39 2.92
3393 5069 2.111878 GACCCGCCCTCATGGATG 59.888 66.667 0.00 0.00 35.39 3.51
3394 5070 2.040464 AGACCCGCCCTCATGGAT 60.040 61.111 0.00 0.00 35.39 3.41
3395 5071 2.764128 GAGACCCGCCCTCATGGA 60.764 66.667 0.00 0.00 35.39 3.41
3396 5072 3.083349 TGAGACCCGCCCTCATGG 61.083 66.667 0.00 0.00 35.89 3.66
3397 5073 2.187946 GTGAGACCCGCCCTCATG 59.812 66.667 0.00 0.00 41.98 3.07
3398 5074 3.083997 GGTGAGACCCGCCCTCAT 61.084 66.667 0.00 0.00 41.98 2.90
3399 5075 4.316823 AGGTGAGACCCGCCCTCA 62.317 66.667 0.00 0.00 46.65 3.86
3400 5076 3.775654 CAGGTGAGACCCGCCCTC 61.776 72.222 0.00 0.00 46.65 4.30
3403 5079 1.972660 ATTAGCAGGTGAGACCCGCC 61.973 60.000 0.00 0.00 42.60 6.13
3404 5080 0.107654 AATTAGCAGGTGAGACCCGC 60.108 55.000 0.00 0.00 41.94 6.13
3405 5081 1.066143 ACAATTAGCAGGTGAGACCCG 60.066 52.381 0.00 0.00 39.75 5.28
3406 5082 2.027192 TCACAATTAGCAGGTGAGACCC 60.027 50.000 0.00 0.00 39.75 4.46
3407 5083 3.334583 TCACAATTAGCAGGTGAGACC 57.665 47.619 0.00 0.00 36.69 3.85
3411 5087 2.906389 AGGTCTCACAATTAGCAGGTGA 59.094 45.455 0.00 0.00 39.09 4.02
3412 5088 3.340814 AGGTCTCACAATTAGCAGGTG 57.659 47.619 0.00 0.00 0.00 4.00
3413 5089 4.097418 ACTAGGTCTCACAATTAGCAGGT 58.903 43.478 0.00 0.00 0.00 4.00
3414 5090 4.404073 AGACTAGGTCTCACAATTAGCAGG 59.596 45.833 0.00 0.00 38.71 4.85
3415 5091 5.590530 AGACTAGGTCTCACAATTAGCAG 57.409 43.478 0.00 0.00 38.71 4.24
3447 5123 1.437397 ACGGAGGGTGTAGGGAAAAA 58.563 50.000 0.00 0.00 0.00 1.94
3448 5124 1.437397 AACGGAGGGTGTAGGGAAAA 58.563 50.000 0.00 0.00 0.00 2.29
3449 5125 1.348696 GAAACGGAGGGTGTAGGGAAA 59.651 52.381 0.00 0.00 0.00 3.13
3450 5126 0.978907 GAAACGGAGGGTGTAGGGAA 59.021 55.000 0.00 0.00 0.00 3.97
3451 5127 0.115745 AGAAACGGAGGGTGTAGGGA 59.884 55.000 0.00 0.00 0.00 4.20
3452 5128 0.981943 AAGAAACGGAGGGTGTAGGG 59.018 55.000 0.00 0.00 0.00 3.53
3453 5129 2.853235 AAAGAAACGGAGGGTGTAGG 57.147 50.000 0.00 0.00 0.00 3.18
3454 5130 4.828829 ACATAAAGAAACGGAGGGTGTAG 58.171 43.478 0.00 0.00 0.00 2.74
3455 5131 4.895668 ACATAAAGAAACGGAGGGTGTA 57.104 40.909 0.00 0.00 0.00 2.90
3456 5132 3.782656 ACATAAAGAAACGGAGGGTGT 57.217 42.857 0.00 0.00 0.00 4.16
3457 5133 4.634443 CCTTACATAAAGAAACGGAGGGTG 59.366 45.833 0.00 0.00 37.38 4.61
3458 5134 4.287845 ACCTTACATAAAGAAACGGAGGGT 59.712 41.667 0.00 0.00 37.38 4.34
3459 5135 4.634443 CACCTTACATAAAGAAACGGAGGG 59.366 45.833 0.00 0.00 37.38 4.30
3460 5136 5.243207 ACACCTTACATAAAGAAACGGAGG 58.757 41.667 0.00 0.00 37.38 4.30
3461 5137 8.488651 AATACACCTTACATAAAGAAACGGAG 57.511 34.615 0.00 0.00 37.38 4.63
3473 5149 8.455682 CCGTGTCAAAAATAATACACCTTACAT 58.544 33.333 0.00 0.00 39.20 2.29
3474 5150 7.444792 ACCGTGTCAAAAATAATACACCTTACA 59.555 33.333 0.00 0.00 39.20 2.41
3475 5151 7.747357 CACCGTGTCAAAAATAATACACCTTAC 59.253 37.037 0.00 0.00 39.20 2.34
3476 5152 7.660617 TCACCGTGTCAAAAATAATACACCTTA 59.339 33.333 0.00 0.00 39.20 2.69
3477 5153 6.487331 TCACCGTGTCAAAAATAATACACCTT 59.513 34.615 0.00 0.00 39.20 3.50
3478 5154 5.998981 TCACCGTGTCAAAAATAATACACCT 59.001 36.000 0.00 0.00 39.20 4.00
3479 5155 6.243811 TCACCGTGTCAAAAATAATACACC 57.756 37.500 0.00 0.00 39.20 4.16
3480 5156 7.523219 TGATCACCGTGTCAAAAATAATACAC 58.477 34.615 0.00 0.00 39.04 2.90
3481 5157 7.674471 TGATCACCGTGTCAAAAATAATACA 57.326 32.000 0.00 0.00 0.00 2.29
3482 5158 8.234546 ACTTGATCACCGTGTCAAAAATAATAC 58.765 33.333 13.79 0.00 34.26 1.89
3483 5159 8.330466 ACTTGATCACCGTGTCAAAAATAATA 57.670 30.769 13.79 0.00 34.26 0.98
3484 5160 7.040755 TGACTTGATCACCGTGTCAAAAATAAT 60.041 33.333 13.94 0.00 35.15 1.28
3485 5161 6.261158 TGACTTGATCACCGTGTCAAAAATAA 59.739 34.615 13.94 0.36 35.15 1.40
3486 5162 5.760743 TGACTTGATCACCGTGTCAAAAATA 59.239 36.000 13.94 3.72 35.15 1.40
3487 5163 4.578516 TGACTTGATCACCGTGTCAAAAAT 59.421 37.500 13.94 6.43 35.15 1.82
3488 5164 3.942115 TGACTTGATCACCGTGTCAAAAA 59.058 39.130 13.94 4.60 35.15 1.94
3489 5165 3.536570 TGACTTGATCACCGTGTCAAAA 58.463 40.909 13.94 4.83 35.15 2.44
3490 5166 3.186702 TGACTTGATCACCGTGTCAAA 57.813 42.857 13.94 2.05 35.15 2.69
3491 5167 2.900716 TGACTTGATCACCGTGTCAA 57.099 45.000 13.94 12.80 35.15 3.18
3500 5176 8.675705 TTCTCTAAAATTGTGTGACTTGATCA 57.324 30.769 0.00 0.00 33.79 2.92
3501 5177 8.778358 ACTTCTCTAAAATTGTGTGACTTGATC 58.222 33.333 0.00 0.00 0.00 2.92
3502 5178 8.682936 ACTTCTCTAAAATTGTGTGACTTGAT 57.317 30.769 0.00 0.00 0.00 2.57
3503 5179 8.506168 AACTTCTCTAAAATTGTGTGACTTGA 57.494 30.769 0.00 0.00 0.00 3.02
3506 5182 9.778741 TCATAACTTCTCTAAAATTGTGTGACT 57.221 29.630 0.00 0.00 0.00 3.41
3507 5183 9.813080 GTCATAACTTCTCTAAAATTGTGTGAC 57.187 33.333 0.00 0.00 0.00 3.67
3508 5184 8.708742 CGTCATAACTTCTCTAAAATTGTGTGA 58.291 33.333 0.00 0.00 0.00 3.58
3509 5185 8.708742 TCGTCATAACTTCTCTAAAATTGTGTG 58.291 33.333 0.00 0.00 0.00 3.82
3510 5186 8.827177 TCGTCATAACTTCTCTAAAATTGTGT 57.173 30.769 0.00 0.00 0.00 3.72
3517 5193 9.374838 GGGTAATTTCGTCATAACTTCTCTAAA 57.625 33.333 0.00 0.00 0.00 1.85
3518 5194 8.755977 AGGGTAATTTCGTCATAACTTCTCTAA 58.244 33.333 0.00 0.00 0.00 2.10
3519 5195 8.302515 AGGGTAATTTCGTCATAACTTCTCTA 57.697 34.615 0.00 0.00 0.00 2.43
3520 5196 7.184067 AGGGTAATTTCGTCATAACTTCTCT 57.816 36.000 0.00 0.00 0.00 3.10
3521 5197 7.201617 CCAAGGGTAATTTCGTCATAACTTCTC 60.202 40.741 0.00 0.00 0.00 2.87
3522 5198 6.598064 CCAAGGGTAATTTCGTCATAACTTCT 59.402 38.462 0.00 0.00 0.00 2.85
3523 5199 6.596497 TCCAAGGGTAATTTCGTCATAACTTC 59.404 38.462 0.00 0.00 0.00 3.01
3524 5200 6.478129 TCCAAGGGTAATTTCGTCATAACTT 58.522 36.000 0.00 0.00 0.00 2.66
3525 5201 6.057321 TCCAAGGGTAATTTCGTCATAACT 57.943 37.500 0.00 0.00 0.00 2.24
3526 5202 6.746745 TTCCAAGGGTAATTTCGTCATAAC 57.253 37.500 0.00 0.00 0.00 1.89
3527 5203 7.762588 TTTTCCAAGGGTAATTTCGTCATAA 57.237 32.000 0.00 0.00 0.00 1.90
3528 5204 7.832187 AGATTTTCCAAGGGTAATTTCGTCATA 59.168 33.333 0.00 0.00 0.00 2.15
3529 5205 6.663523 AGATTTTCCAAGGGTAATTTCGTCAT 59.336 34.615 0.00 0.00 0.00 3.06
3530 5206 6.007703 AGATTTTCCAAGGGTAATTTCGTCA 58.992 36.000 0.00 0.00 0.00 4.35
3531 5207 6.072119 ACAGATTTTCCAAGGGTAATTTCGTC 60.072 38.462 0.00 0.00 0.00 4.20
3532 5208 5.773176 ACAGATTTTCCAAGGGTAATTTCGT 59.227 36.000 0.00 0.00 0.00 3.85
3533 5209 6.267496 ACAGATTTTCCAAGGGTAATTTCG 57.733 37.500 0.00 0.00 0.00 3.46
3534 5210 6.368791 GCAACAGATTTTCCAAGGGTAATTTC 59.631 38.462 0.00 0.00 0.00 2.17
3535 5211 6.043127 AGCAACAGATTTTCCAAGGGTAATTT 59.957 34.615 0.00 0.00 0.00 1.82
3536 5212 5.543790 AGCAACAGATTTTCCAAGGGTAATT 59.456 36.000 0.00 0.00 0.00 1.40
3537 5213 5.086621 AGCAACAGATTTTCCAAGGGTAAT 58.913 37.500 0.00 0.00 0.00 1.89
3538 5214 4.479158 AGCAACAGATTTTCCAAGGGTAA 58.521 39.130 0.00 0.00 0.00 2.85
3539 5215 4.112634 AGCAACAGATTTTCCAAGGGTA 57.887 40.909 0.00 0.00 0.00 3.69
3540 5216 2.962859 AGCAACAGATTTTCCAAGGGT 58.037 42.857 0.00 0.00 0.00 4.34



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.