Multiple sequence alignment - TraesCS2B01G394500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G394500 chr2B 100.000 5604 0 0 1 5604 559305179 559310782 0.000000e+00 10349.0
1 TraesCS2B01G394500 chr2B 89.828 1455 140 8 3163 4611 559417441 559418893 0.000000e+00 1860.0
2 TraesCS2B01G394500 chr2B 88.000 400 43 2 2133 2529 559417028 559417425 8.500000e-128 468.0
3 TraesCS2B01G394500 chr2B 88.272 324 38 0 1144 1467 559193261 559192938 6.810000e-104 388.0
4 TraesCS2B01G394500 chr2B 85.583 326 44 2 1142 1467 557990204 557990526 6.950000e-89 339.0
5 TraesCS2B01G394500 chr2B 86.404 228 28 2 1881 2106 559416747 559416973 4.340000e-61 246.0
6 TraesCS2B01G394500 chr2B 78.846 104 20 2 3988 4090 579572123 579572021 1.010000e-07 69.4
7 TraesCS2B01G394500 chr2D 93.918 3716 159 31 1849 5535 477270813 477274490 0.000000e+00 5548.0
8 TraesCS2B01G394500 chr2D 89.178 1460 151 4 3158 4611 477395483 477396941 0.000000e+00 1814.0
9 TraesCS2B01G394500 chr2D 93.198 985 53 8 543 1525 477269537 477270509 0.000000e+00 1435.0
10 TraesCS2B01G394500 chr2D 82.334 617 70 26 886 1474 477393852 477394457 3.010000e-137 499.0
11 TraesCS2B01G394500 chr2D 86.935 398 47 2 2136 2530 477395078 477395473 5.150000e-120 442.0
12 TraesCS2B01G394500 chr2D 87.963 324 39 0 1144 1467 477264771 477264448 3.170000e-102 383.0
13 TraesCS2B01G394500 chr2D 85.494 324 47 0 1144 1467 476840682 476840359 6.950000e-89 339.0
14 TraesCS2B01G394500 chr2D 86.802 197 26 0 1910 2106 477394823 477395019 2.630000e-53 220.0
15 TraesCS2B01G394500 chr2D 78.571 140 12 6 1655 1776 477270563 477270702 6.020000e-10 76.8
16 TraesCS2B01G394500 chr2D 77.885 104 21 2 3988 4090 493004995 493004893 4.690000e-06 63.9
17 TraesCS2B01G394500 chr2A 93.932 2439 117 19 2388 4809 619756007 619758431 0.000000e+00 3655.0
18 TraesCS2B01G394500 chr2A 89.359 1466 149 6 3152 4611 619766539 619768003 0.000000e+00 1836.0
19 TraesCS2B01G394500 chr2A 90.924 1256 55 29 548 1776 619754488 619755711 0.000000e+00 1633.0
20 TraesCS2B01G394500 chr2A 87.739 783 43 23 4831 5604 619758423 619759161 0.000000e+00 865.0
21 TraesCS2B01G394500 chr2A 81.773 609 66 21 901 1474 619764942 619765540 8.500000e-128 468.0
22 TraesCS2B01G394500 chr2A 87.395 357 42 1 2136 2489 619766145 619766501 1.880000e-109 407.0
23 TraesCS2B01G394500 chr2A 87.037 324 41 1 1144 1467 619628323 619628001 1.150000e-96 364.0
24 TraesCS2B01G394500 chr2A 87.410 278 14 11 1775 2049 619755749 619756008 3.280000e-77 300.0
25 TraesCS2B01G394500 chr2A 86.404 228 30 1 1879 2106 619765860 619766086 1.210000e-61 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G394500 chr2B 559305179 559310782 5603 False 10349.000000 10349 100.000000 1 5604 1 chr2B.!!$F2 5603
1 TraesCS2B01G394500 chr2B 559416747 559418893 2146 False 858.000000 1860 88.077333 1881 4611 3 chr2B.!!$F3 2730
2 TraesCS2B01G394500 chr2D 477269537 477274490 4953 False 2353.266667 5548 88.562333 543 5535 3 chr2D.!!$F1 4992
3 TraesCS2B01G394500 chr2D 477393852 477396941 3089 False 743.750000 1814 86.312250 886 4611 4 chr2D.!!$F2 3725
4 TraesCS2B01G394500 chr2A 619754488 619759161 4673 False 1613.250000 3655 90.001250 548 5604 4 chr2A.!!$F1 5056
5 TraesCS2B01G394500 chr2A 619764942 619768003 3061 False 739.750000 1836 86.232750 901 4611 4 chr2A.!!$F2 3710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 504 0.035439 ACGATTTTGCGGGATGGAGT 60.035 50.000 0.0 0.0 35.12 3.85 F
1344 1382 1.004161 GGCCTCCTCAGCTTCTTCTTT 59.996 52.381 0.0 0.0 0.00 2.52 F
2706 2936 0.527817 CGGCGTATCTTGGACCACTC 60.528 60.000 0.0 0.0 0.00 3.51 F
2709 2939 0.866061 CGTATCTTGGACCACTCGCG 60.866 60.000 0.0 0.0 0.00 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 2052 1.973812 GGTCCTGGGCAAGTGCTTC 60.974 63.158 0.00 0.00 41.70 3.86 R
2788 3020 0.183731 GCATTCCAGGGGTTAGAGGG 59.816 60.000 0.00 0.00 0.00 4.30 R
4484 4734 0.321122 GACTGAGGCAGAACCCACAG 60.321 60.000 0.82 4.45 44.22 3.66 R
4690 4945 4.379813 GCGCCCATATGGATGTTCTTAATG 60.380 45.833 24.00 2.65 37.39 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.749064 TCAGCCTGCCGTCGAGAC 61.749 66.667 0.00 0.00 0.00 3.36
18 19 4.056125 CAGCCTGCCGTCGAGACA 62.056 66.667 4.02 0.00 0.00 3.41
19 20 4.057428 AGCCTGCCGTCGAGACAC 62.057 66.667 4.02 0.00 0.00 3.67
20 21 4.057428 GCCTGCCGTCGAGACACT 62.057 66.667 4.02 0.00 0.00 3.55
21 22 2.179517 CCTGCCGTCGAGACACTC 59.820 66.667 4.02 0.00 0.00 3.51
30 31 4.177229 GAGACACTCGAAGCAGGC 57.823 61.111 0.00 0.00 0.00 4.85
31 32 1.803519 GAGACACTCGAAGCAGGCG 60.804 63.158 0.00 0.00 0.00 5.52
32 33 3.482783 GACACTCGAAGCAGGCGC 61.483 66.667 0.00 0.00 38.99 6.53
88 89 2.664851 CGTGGGCTCGCTTTCACA 60.665 61.111 0.00 0.00 0.00 3.58
89 90 2.250939 CGTGGGCTCGCTTTCACAA 61.251 57.895 0.00 0.00 0.00 3.33
90 91 1.576421 GTGGGCTCGCTTTCACAAG 59.424 57.895 0.00 0.00 0.00 3.16
100 101 2.776694 CTTTCACAAGCTCGATGACG 57.223 50.000 0.00 0.00 41.26 4.35
101 102 0.790207 TTTCACAAGCTCGATGACGC 59.210 50.000 0.00 0.00 39.58 5.19
102 103 0.038251 TTCACAAGCTCGATGACGCT 60.038 50.000 0.00 0.00 39.58 5.07
103 104 0.456824 TCACAAGCTCGATGACGCTC 60.457 55.000 0.00 0.00 39.58 5.03
104 105 0.457509 CACAAGCTCGATGACGCTCT 60.458 55.000 0.00 0.00 39.58 4.09
105 106 0.244994 ACAAGCTCGATGACGCTCTT 59.755 50.000 0.00 0.00 39.58 2.85
106 107 1.337260 ACAAGCTCGATGACGCTCTTT 60.337 47.619 0.00 0.00 39.58 2.52
107 108 1.060266 CAAGCTCGATGACGCTCTTTG 59.940 52.381 0.00 0.00 39.58 2.77
108 109 0.528017 AGCTCGATGACGCTCTTTGA 59.472 50.000 0.00 0.00 39.58 2.69
109 110 0.642800 GCTCGATGACGCTCTTTGAC 59.357 55.000 0.00 0.00 39.58 3.18
110 111 1.272781 CTCGATGACGCTCTTTGACC 58.727 55.000 0.00 0.00 39.58 4.02
111 112 0.601057 TCGATGACGCTCTTTGACCA 59.399 50.000 0.00 0.00 39.58 4.02
112 113 1.000394 TCGATGACGCTCTTTGACCAA 60.000 47.619 0.00 0.00 39.58 3.67
113 114 1.126846 CGATGACGCTCTTTGACCAAC 59.873 52.381 0.00 0.00 0.00 3.77
114 115 1.464997 GATGACGCTCTTTGACCAACC 59.535 52.381 0.00 0.00 0.00 3.77
115 116 0.179234 TGACGCTCTTTGACCAACCA 59.821 50.000 0.00 0.00 0.00 3.67
116 117 0.586802 GACGCTCTTTGACCAACCAC 59.413 55.000 0.00 0.00 0.00 4.16
117 118 0.818040 ACGCTCTTTGACCAACCACC 60.818 55.000 0.00 0.00 0.00 4.61
118 119 0.817634 CGCTCTTTGACCAACCACCA 60.818 55.000 0.00 0.00 0.00 4.17
119 120 1.398692 GCTCTTTGACCAACCACCAA 58.601 50.000 0.00 0.00 0.00 3.67
120 121 1.338020 GCTCTTTGACCAACCACCAAG 59.662 52.381 0.00 0.00 0.00 3.61
121 122 2.930950 CTCTTTGACCAACCACCAAGA 58.069 47.619 0.00 0.00 0.00 3.02
122 123 2.880890 CTCTTTGACCAACCACCAAGAG 59.119 50.000 0.00 0.00 0.00 2.85
123 124 1.956477 CTTTGACCAACCACCAAGAGG 59.044 52.381 0.00 0.00 42.21 3.69
134 135 2.187073 CCAAGAGGTTGCATGAGCC 58.813 57.895 0.00 0.00 41.13 4.70
135 136 0.609957 CCAAGAGGTTGCATGAGCCA 60.610 55.000 0.00 0.00 41.13 4.75
136 137 0.809385 CAAGAGGTTGCATGAGCCAG 59.191 55.000 0.00 0.00 41.13 4.85
137 138 0.694771 AAGAGGTTGCATGAGCCAGA 59.305 50.000 0.00 0.00 41.13 3.86
138 139 0.252479 AGAGGTTGCATGAGCCAGAG 59.748 55.000 0.00 0.00 41.13 3.35
139 140 0.251354 GAGGTTGCATGAGCCAGAGA 59.749 55.000 0.00 0.00 41.13 3.10
140 141 0.917533 AGGTTGCATGAGCCAGAGAT 59.082 50.000 0.00 0.00 41.13 2.75
141 142 1.284198 AGGTTGCATGAGCCAGAGATT 59.716 47.619 0.00 0.00 41.13 2.40
142 143 1.404391 GGTTGCATGAGCCAGAGATTG 59.596 52.381 0.00 0.00 41.13 2.67
143 144 2.362736 GTTGCATGAGCCAGAGATTGA 58.637 47.619 0.00 0.00 41.13 2.57
144 145 2.327200 TGCATGAGCCAGAGATTGAG 57.673 50.000 0.00 0.00 41.13 3.02
145 146 0.945813 GCATGAGCCAGAGATTGAGC 59.054 55.000 0.00 0.00 33.58 4.26
146 147 1.475392 GCATGAGCCAGAGATTGAGCT 60.475 52.381 0.00 0.00 36.44 4.09
147 148 2.485903 CATGAGCCAGAGATTGAGCTC 58.514 52.381 6.82 6.82 44.05 4.09
148 149 0.829333 TGAGCCAGAGATTGAGCTCC 59.171 55.000 12.15 0.00 43.58 4.70
149 150 0.106521 GAGCCAGAGATTGAGCTCCC 59.893 60.000 12.15 0.16 40.90 4.30
150 151 1.148048 GCCAGAGATTGAGCTCCCC 59.852 63.158 12.15 0.00 35.49 4.81
151 152 1.445095 CCAGAGATTGAGCTCCCCG 59.555 63.158 12.15 0.00 35.49 5.73
152 153 1.227497 CAGAGATTGAGCTCCCCGC 60.227 63.158 12.15 2.04 35.49 6.13
162 163 4.020617 CTCCCCGCTGCACAGGAA 62.021 66.667 0.00 0.00 0.00 3.36
163 164 3.965539 CTCCCCGCTGCACAGGAAG 62.966 68.421 0.00 0.00 0.00 3.46
168 169 3.730761 GCTGCACAGGAAGCGGTG 61.731 66.667 0.00 0.00 35.53 4.94
169 170 3.052082 CTGCACAGGAAGCGGTGG 61.052 66.667 0.00 0.00 35.58 4.61
183 184 4.778143 GTGGCGGCCGGTGAAGAT 62.778 66.667 29.38 0.00 0.00 2.40
184 185 4.776322 TGGCGGCCGGTGAAGATG 62.776 66.667 29.38 0.00 0.00 2.90
193 194 3.869272 GTGAAGATGGCGCCGCTG 61.869 66.667 23.90 0.00 0.00 5.18
194 195 4.081185 TGAAGATGGCGCCGCTGA 62.081 61.111 23.90 3.74 0.00 4.26
195 196 2.819595 GAAGATGGCGCCGCTGAA 60.820 61.111 23.90 3.26 0.00 3.02
196 197 3.100862 GAAGATGGCGCCGCTGAAC 62.101 63.158 23.90 12.57 0.00 3.18
206 207 3.793144 CGCTGAACGGCTTGAGGC 61.793 66.667 4.14 0.00 38.44 4.70
214 215 4.445699 GGCTTGAGGCGACTATGG 57.554 61.111 0.00 0.00 44.43 2.74
215 216 1.823295 GGCTTGAGGCGACTATGGA 59.177 57.895 0.00 0.00 44.43 3.41
216 217 0.178068 GGCTTGAGGCGACTATGGAA 59.822 55.000 0.00 0.00 44.43 3.53
217 218 1.576356 GCTTGAGGCGACTATGGAAG 58.424 55.000 0.00 0.00 44.43 3.46
218 219 1.137086 GCTTGAGGCGACTATGGAAGA 59.863 52.381 0.00 0.00 44.43 2.87
219 220 2.801342 GCTTGAGGCGACTATGGAAGAG 60.801 54.545 0.00 0.00 44.43 2.85
220 221 2.145397 TGAGGCGACTATGGAAGAGT 57.855 50.000 0.00 0.00 44.43 3.24
221 222 3.292492 TGAGGCGACTATGGAAGAGTA 57.708 47.619 0.00 0.00 44.43 2.59
222 223 2.950309 TGAGGCGACTATGGAAGAGTAC 59.050 50.000 0.00 0.00 44.43 2.73
223 224 1.948145 AGGCGACTATGGAAGAGTACG 59.052 52.381 0.00 0.00 40.61 3.67
224 225 1.945394 GGCGACTATGGAAGAGTACGA 59.055 52.381 0.00 0.00 0.00 3.43
225 226 2.031857 GGCGACTATGGAAGAGTACGAG 60.032 54.545 0.00 0.00 0.00 4.18
226 227 2.602694 GCGACTATGGAAGAGTACGAGC 60.603 54.545 0.00 0.00 0.00 5.03
227 228 2.873472 CGACTATGGAAGAGTACGAGCT 59.127 50.000 0.00 0.00 0.00 4.09
228 229 3.059461 CGACTATGGAAGAGTACGAGCTC 60.059 52.174 2.73 2.73 35.82 4.09
229 230 3.878103 GACTATGGAAGAGTACGAGCTCA 59.122 47.826 15.40 0.00 37.94 4.26
230 231 3.628487 ACTATGGAAGAGTACGAGCTCAC 59.372 47.826 15.40 5.22 37.94 3.51
231 232 1.174783 TGGAAGAGTACGAGCTCACC 58.825 55.000 15.40 13.32 37.94 4.02
232 233 1.174783 GGAAGAGTACGAGCTCACCA 58.825 55.000 15.40 0.00 37.94 4.17
233 234 1.544691 GGAAGAGTACGAGCTCACCAA 59.455 52.381 15.40 0.00 37.94 3.67
234 235 2.597520 GAAGAGTACGAGCTCACCAAC 58.402 52.381 15.40 5.62 37.94 3.77
235 236 0.522180 AGAGTACGAGCTCACCAACG 59.478 55.000 15.40 1.03 37.94 4.10
236 237 0.240411 GAGTACGAGCTCACCAACGT 59.760 55.000 15.40 7.85 41.66 3.99
237 238 0.672342 AGTACGAGCTCACCAACGTT 59.328 50.000 15.40 0.00 39.59 3.99
238 239 1.058404 GTACGAGCTCACCAACGTTC 58.942 55.000 15.40 0.00 39.59 3.95
239 240 0.956633 TACGAGCTCACCAACGTTCT 59.043 50.000 15.40 0.00 39.59 3.01
240 241 0.104304 ACGAGCTCACCAACGTTCTT 59.896 50.000 15.40 0.00 35.47 2.52
241 242 1.217882 CGAGCTCACCAACGTTCTTT 58.782 50.000 15.40 0.00 0.00 2.52
242 243 1.597663 CGAGCTCACCAACGTTCTTTT 59.402 47.619 15.40 0.00 0.00 2.27
243 244 2.599848 CGAGCTCACCAACGTTCTTTTG 60.600 50.000 15.40 0.00 0.00 2.44
244 245 2.612212 GAGCTCACCAACGTTCTTTTGA 59.388 45.455 9.40 0.00 0.00 2.69
245 246 2.614057 AGCTCACCAACGTTCTTTTGAG 59.386 45.455 15.66 15.66 34.77 3.02
246 247 2.287009 GCTCACCAACGTTCTTTTGAGG 60.287 50.000 19.10 10.66 32.72 3.86
247 248 1.673920 TCACCAACGTTCTTTTGAGGC 59.326 47.619 0.00 0.00 0.00 4.70
248 249 1.029681 ACCAACGTTCTTTTGAGGCC 58.970 50.000 0.00 0.00 0.00 5.19
249 250 0.040425 CCAACGTTCTTTTGAGGCCG 60.040 55.000 0.00 0.00 0.00 6.13
250 251 0.040425 CAACGTTCTTTTGAGGCCGG 60.040 55.000 0.00 0.00 0.00 6.13
251 252 1.792118 AACGTTCTTTTGAGGCCGGC 61.792 55.000 21.18 21.18 0.00 6.13
252 253 2.561373 GTTCTTTTGAGGCCGGCG 59.439 61.111 22.54 4.34 0.00 6.46
253 254 1.964373 GTTCTTTTGAGGCCGGCGA 60.964 57.895 22.54 7.16 0.00 5.54
254 255 1.228003 TTCTTTTGAGGCCGGCGAA 60.228 52.632 22.54 13.53 0.00 4.70
255 256 1.512156 TTCTTTTGAGGCCGGCGAAC 61.512 55.000 22.54 14.55 0.00 3.95
256 257 2.203224 TTTTGAGGCCGGCGAACA 60.203 55.556 22.54 17.13 0.00 3.18
257 258 1.791103 CTTTTGAGGCCGGCGAACAA 61.791 55.000 22.54 21.84 0.00 2.83
258 259 1.791103 TTTTGAGGCCGGCGAACAAG 61.791 55.000 22.54 0.00 0.00 3.16
259 260 2.951475 TTTGAGGCCGGCGAACAAGT 62.951 55.000 22.54 0.00 0.00 3.16
260 261 2.102109 TTGAGGCCGGCGAACAAGTA 62.102 55.000 22.54 2.73 0.00 2.24
261 262 1.153429 GAGGCCGGCGAACAAGTAT 60.153 57.895 22.54 0.00 0.00 2.12
262 263 0.743345 GAGGCCGGCGAACAAGTATT 60.743 55.000 22.54 0.00 0.00 1.89
263 264 0.538118 AGGCCGGCGAACAAGTATTA 59.462 50.000 22.54 0.00 0.00 0.98
264 265 0.654160 GGCCGGCGAACAAGTATTAC 59.346 55.000 22.54 0.00 0.00 1.89
265 266 0.654160 GCCGGCGAACAAGTATTACC 59.346 55.000 12.58 0.00 0.00 2.85
266 267 1.741394 GCCGGCGAACAAGTATTACCT 60.741 52.381 12.58 0.00 0.00 3.08
267 268 2.199236 CCGGCGAACAAGTATTACCTC 58.801 52.381 9.30 0.00 0.00 3.85
268 269 2.417651 CCGGCGAACAAGTATTACCTCA 60.418 50.000 9.30 0.00 0.00 3.86
269 270 3.255725 CGGCGAACAAGTATTACCTCAA 58.744 45.455 0.00 0.00 0.00 3.02
270 271 3.061697 CGGCGAACAAGTATTACCTCAAC 59.938 47.826 0.00 0.00 0.00 3.18
271 272 3.061697 GGCGAACAAGTATTACCTCAACG 59.938 47.826 0.00 0.00 0.00 4.10
272 273 3.922240 GCGAACAAGTATTACCTCAACGA 59.078 43.478 0.00 0.00 0.00 3.85
273 274 4.201561 GCGAACAAGTATTACCTCAACGAC 60.202 45.833 0.00 0.00 0.00 4.34
274 275 4.919168 CGAACAAGTATTACCTCAACGACA 59.081 41.667 0.00 0.00 0.00 4.35
275 276 5.403166 CGAACAAGTATTACCTCAACGACAA 59.597 40.000 0.00 0.00 0.00 3.18
276 277 6.399669 CGAACAAGTATTACCTCAACGACAAG 60.400 42.308 0.00 0.00 0.00 3.16
277 278 4.689345 ACAAGTATTACCTCAACGACAAGC 59.311 41.667 0.00 0.00 0.00 4.01
278 279 3.858247 AGTATTACCTCAACGACAAGCC 58.142 45.455 0.00 0.00 0.00 4.35
279 280 1.722011 ATTACCTCAACGACAAGCCG 58.278 50.000 0.00 0.00 0.00 5.52
280 281 0.390124 TTACCTCAACGACAAGCCGT 59.610 50.000 0.00 0.00 45.64 5.68
281 282 0.319211 TACCTCAACGACAAGCCGTG 60.319 55.000 0.00 0.00 42.54 4.94
282 283 1.300620 CCTCAACGACAAGCCGTGA 60.301 57.895 0.00 0.00 42.54 4.35
283 284 1.284982 CCTCAACGACAAGCCGTGAG 61.285 60.000 0.00 0.00 42.54 3.51
284 285 1.891060 CTCAACGACAAGCCGTGAGC 61.891 60.000 0.00 0.00 42.54 4.26
285 286 2.665185 AACGACAAGCCGTGAGCC 60.665 61.111 0.00 0.00 45.47 4.70
306 307 4.592192 GCCCGCGATGCAGCTAGA 62.592 66.667 8.23 0.00 34.40 2.43
307 308 2.341543 CCCGCGATGCAGCTAGAT 59.658 61.111 8.23 0.00 34.40 1.98
308 309 1.735920 CCCGCGATGCAGCTAGATC 60.736 63.158 8.23 0.00 34.40 2.75
309 310 1.288439 CCGCGATGCAGCTAGATCT 59.712 57.895 8.23 0.00 34.40 2.75
310 311 0.523519 CCGCGATGCAGCTAGATCTA 59.476 55.000 8.23 1.69 34.40 1.98
311 312 1.133982 CCGCGATGCAGCTAGATCTAT 59.866 52.381 8.23 0.00 34.40 1.98
312 313 2.449189 CGCGATGCAGCTAGATCTATC 58.551 52.381 0.00 0.00 34.40 2.08
313 314 2.097304 CGCGATGCAGCTAGATCTATCT 59.903 50.000 0.00 1.01 40.86 1.98
314 315 3.427368 CGCGATGCAGCTAGATCTATCTT 60.427 47.826 0.00 0.00 38.32 2.40
315 316 4.493547 GCGATGCAGCTAGATCTATCTTT 58.506 43.478 2.11 0.00 38.32 2.52
316 317 5.645624 GCGATGCAGCTAGATCTATCTTTA 58.354 41.667 2.11 0.00 38.32 1.85
317 318 6.272318 GCGATGCAGCTAGATCTATCTTTAT 58.728 40.000 2.11 1.46 38.32 1.40
318 319 6.417635 GCGATGCAGCTAGATCTATCTTTATC 59.582 42.308 2.11 9.16 38.32 1.75
319 320 7.681782 GCGATGCAGCTAGATCTATCTTTATCT 60.682 40.741 16.81 0.00 38.32 1.98
320 321 8.835439 CGATGCAGCTAGATCTATCTTTATCTA 58.165 37.037 16.81 0.00 38.32 1.98
323 324 9.473007 TGCAGCTAGATCTATCTTTATCTATGT 57.527 33.333 2.11 0.00 38.32 2.29
351 352 9.537192 TTAGTTTTATGTATGGTTATCTCCGTG 57.463 33.333 0.00 0.00 0.00 4.94
352 353 7.562135 AGTTTTATGTATGGTTATCTCCGTGT 58.438 34.615 0.00 0.00 0.00 4.49
353 354 7.494625 AGTTTTATGTATGGTTATCTCCGTGTG 59.505 37.037 0.00 0.00 0.00 3.82
354 355 6.474140 TTATGTATGGTTATCTCCGTGTGT 57.526 37.500 0.00 0.00 0.00 3.72
355 356 4.811969 TGTATGGTTATCTCCGTGTGTT 57.188 40.909 0.00 0.00 0.00 3.32
356 357 4.751060 TGTATGGTTATCTCCGTGTGTTC 58.249 43.478 0.00 0.00 0.00 3.18
357 358 4.464951 TGTATGGTTATCTCCGTGTGTTCT 59.535 41.667 0.00 0.00 0.00 3.01
358 359 5.653330 TGTATGGTTATCTCCGTGTGTTCTA 59.347 40.000 0.00 0.00 0.00 2.10
359 360 4.713824 TGGTTATCTCCGTGTGTTCTAG 57.286 45.455 0.00 0.00 0.00 2.43
360 361 4.338012 TGGTTATCTCCGTGTGTTCTAGA 58.662 43.478 0.00 0.00 0.00 2.43
361 362 4.157289 TGGTTATCTCCGTGTGTTCTAGAC 59.843 45.833 0.00 0.00 0.00 2.59
362 363 4.341099 GTTATCTCCGTGTGTTCTAGACG 58.659 47.826 0.00 0.00 44.83 4.18
377 378 5.980698 TCTAGACGAACTATGTAACGAGG 57.019 43.478 0.00 0.00 0.00 4.63
378 379 5.664457 TCTAGACGAACTATGTAACGAGGA 58.336 41.667 0.00 0.00 0.00 3.71
379 380 6.108687 TCTAGACGAACTATGTAACGAGGAA 58.891 40.000 0.00 0.00 0.00 3.36
380 381 4.979388 AGACGAACTATGTAACGAGGAAC 58.021 43.478 0.00 0.00 0.00 3.62
394 395 4.914312 CGAGGAACGTAACTTTTATGCA 57.086 40.909 0.00 0.00 37.22 3.96
395 396 5.272167 CGAGGAACGTAACTTTTATGCAA 57.728 39.130 0.00 0.00 37.22 4.08
396 397 5.313623 CGAGGAACGTAACTTTTATGCAAG 58.686 41.667 0.00 0.00 37.22 4.01
397 398 5.107220 CGAGGAACGTAACTTTTATGCAAGT 60.107 40.000 0.00 0.00 36.55 3.16
398 399 6.565247 CGAGGAACGTAACTTTTATGCAAGTT 60.565 38.462 6.73 6.73 46.54 2.66
399 400 7.034685 AGGAACGTAACTTTTATGCAAGTTT 57.965 32.000 6.81 0.00 43.17 2.66
400 401 7.485810 AGGAACGTAACTTTTATGCAAGTTTT 58.514 30.769 6.81 0.00 43.17 2.43
401 402 7.977293 AGGAACGTAACTTTTATGCAAGTTTTT 59.023 29.630 6.81 0.00 43.17 1.94
402 403 9.235537 GGAACGTAACTTTTATGCAAGTTTTTA 57.764 29.630 6.81 0.00 43.17 1.52
410 411 9.644993 ACTTTTATGCAAGTTTTTAAATTTCGC 57.355 25.926 0.00 0.00 32.81 4.70
411 412 8.686936 TTTTATGCAAGTTTTTAAATTTCGCG 57.313 26.923 0.00 0.00 0.00 5.87
412 413 5.898630 ATGCAAGTTTTTAAATTTCGCGT 57.101 30.435 5.77 0.00 0.00 6.01
413 414 6.994868 ATGCAAGTTTTTAAATTTCGCGTA 57.005 29.167 5.77 0.00 0.00 4.42
414 415 6.187797 TGCAAGTTTTTAAATTTCGCGTAC 57.812 33.333 5.77 0.00 0.00 3.67
415 416 5.108705 TGCAAGTTTTTAAATTTCGCGTACG 60.109 36.000 11.84 11.84 42.01 3.67
416 417 5.284370 CAAGTTTTTAAATTTCGCGTACGC 58.716 37.500 29.83 29.83 39.84 4.42
417 418 4.775664 AGTTTTTAAATTTCGCGTACGCT 58.224 34.783 34.69 19.34 39.84 5.07
418 419 5.207033 AGTTTTTAAATTTCGCGTACGCTT 58.793 33.333 34.69 24.28 39.84 4.68
419 420 5.682422 AGTTTTTAAATTTCGCGTACGCTTT 59.318 32.000 34.69 28.20 39.84 3.51
420 421 6.196910 AGTTTTTAAATTTCGCGTACGCTTTT 59.803 30.769 34.69 27.05 39.84 2.27
421 422 7.375544 AGTTTTTAAATTTCGCGTACGCTTTTA 59.624 29.630 34.69 26.19 39.84 1.52
422 423 6.580763 TTTAAATTTCGCGTACGCTTTTAC 57.419 33.333 34.69 8.42 39.84 2.01
423 424 2.408398 ATTTCGCGTACGCTTTTACG 57.592 45.000 34.69 19.81 46.23 3.18
424 425 1.403493 TTTCGCGTACGCTTTTACGA 58.597 45.000 34.69 21.71 46.37 3.43
425 426 0.976963 TTCGCGTACGCTTTTACGAG 59.023 50.000 34.69 18.39 46.37 4.18
426 427 2.628972 CGCGTACGCTTTTACGAGA 58.371 52.632 34.69 0.00 46.37 4.04
427 428 1.186030 CGCGTACGCTTTTACGAGAT 58.814 50.000 34.69 0.00 46.37 2.75
428 429 1.184481 CGCGTACGCTTTTACGAGATC 59.816 52.381 34.69 4.72 46.37 2.75
429 430 2.448219 GCGTACGCTTTTACGAGATCT 58.552 47.619 31.95 0.00 46.37 2.75
430 431 3.611517 GCGTACGCTTTTACGAGATCTA 58.388 45.455 31.95 0.00 46.37 1.98
431 432 4.217497 GCGTACGCTTTTACGAGATCTAT 58.783 43.478 31.95 0.00 46.37 1.98
432 433 4.674211 GCGTACGCTTTTACGAGATCTATT 59.326 41.667 31.95 0.00 46.37 1.73
433 434 5.172771 GCGTACGCTTTTACGAGATCTATTT 59.827 40.000 31.95 0.00 46.37 1.40
434 435 6.291479 GCGTACGCTTTTACGAGATCTATTTT 60.291 38.462 31.95 0.00 46.37 1.82
435 436 7.607005 CGTACGCTTTTACGAGATCTATTTTT 58.393 34.615 0.52 0.00 46.37 1.94
436 437 7.574481 CGTACGCTTTTACGAGATCTATTTTTG 59.426 37.037 0.52 0.00 46.37 2.44
437 438 7.360575 ACGCTTTTACGAGATCTATTTTTGT 57.639 32.000 0.00 0.00 36.70 2.83
438 439 7.234384 ACGCTTTTACGAGATCTATTTTTGTG 58.766 34.615 0.00 0.00 36.70 3.33
439 440 6.682863 CGCTTTTACGAGATCTATTTTTGTGG 59.317 38.462 0.00 0.00 34.06 4.17
440 441 7.527457 GCTTTTACGAGATCTATTTTTGTGGT 58.473 34.615 0.00 0.00 0.00 4.16
441 442 7.481798 GCTTTTACGAGATCTATTTTTGTGGTG 59.518 37.037 0.00 0.00 0.00 4.17
442 443 6.978343 TTACGAGATCTATTTTTGTGGTGG 57.022 37.500 0.00 0.00 0.00 4.61
443 444 4.261801 ACGAGATCTATTTTTGTGGTGGG 58.738 43.478 0.00 0.00 0.00 4.61
444 445 3.065371 CGAGATCTATTTTTGTGGTGGGC 59.935 47.826 0.00 0.00 0.00 5.36
445 446 3.365472 AGATCTATTTTTGTGGTGGGCC 58.635 45.455 0.00 0.00 0.00 5.80
446 447 2.685106 TCTATTTTTGTGGTGGGCCA 57.315 45.000 0.00 0.00 43.73 5.36
455 456 1.301623 TGGTGGGCCATAACTTCCG 59.698 57.895 10.70 0.00 40.46 4.30
456 457 1.453197 GGTGGGCCATAACTTCCGG 60.453 63.158 10.70 0.00 34.09 5.14
457 458 2.119029 GTGGGCCATAACTTCCGGC 61.119 63.158 10.70 0.00 45.47 6.13
462 463 2.959507 GCCATAACTTCCGGCAAAAT 57.040 45.000 0.00 0.00 45.52 1.82
463 464 2.809446 GCCATAACTTCCGGCAAAATC 58.191 47.619 0.00 0.00 45.52 2.17
464 465 2.165437 GCCATAACTTCCGGCAAAATCA 59.835 45.455 0.00 0.00 45.52 2.57
465 466 3.181476 GCCATAACTTCCGGCAAAATCAT 60.181 43.478 0.00 0.00 45.52 2.45
466 467 4.680440 GCCATAACTTCCGGCAAAATCATT 60.680 41.667 0.00 0.00 45.52 2.57
467 468 5.418676 CCATAACTTCCGGCAAAATCATTT 58.581 37.500 0.00 0.00 0.00 2.32
468 469 5.874261 CCATAACTTCCGGCAAAATCATTTT 59.126 36.000 0.00 0.00 0.00 1.82
469 470 6.371271 CCATAACTTCCGGCAAAATCATTTTT 59.629 34.615 0.00 0.00 35.41 1.94
479 480 5.249336 CAAAATCATTTTTGGACGAACCG 57.751 39.130 0.00 0.00 45.18 4.44
480 481 4.577834 AAATCATTTTTGGACGAACCGT 57.422 36.364 0.00 0.00 45.10 4.83
481 482 5.692613 AAATCATTTTTGGACGAACCGTA 57.307 34.783 0.00 0.00 41.37 4.02
482 483 5.890424 AATCATTTTTGGACGAACCGTAT 57.110 34.783 0.00 0.00 41.37 3.06
483 484 6.988622 AATCATTTTTGGACGAACCGTATA 57.011 33.333 0.00 0.00 41.37 1.47
484 485 6.988622 ATCATTTTTGGACGAACCGTATAA 57.011 33.333 0.00 0.00 41.37 0.98
485 486 6.168164 TCATTTTTGGACGAACCGTATAAC 57.832 37.500 0.00 0.00 41.37 1.89
486 487 4.644044 TTTTTGGACGAACCGTATAACG 57.356 40.909 0.00 0.00 41.37 3.18
487 488 3.567576 TTTGGACGAACCGTATAACGA 57.432 42.857 0.15 0.00 46.05 3.85
488 489 3.781079 TTGGACGAACCGTATAACGAT 57.219 42.857 0.15 0.00 46.05 3.73
489 490 3.781079 TGGACGAACCGTATAACGATT 57.219 42.857 0.15 0.00 46.05 3.34
490 491 4.108699 TGGACGAACCGTATAACGATTT 57.891 40.909 0.15 0.00 46.05 2.17
491 492 4.493547 TGGACGAACCGTATAACGATTTT 58.506 39.130 0.15 0.00 46.05 1.82
492 493 4.326817 TGGACGAACCGTATAACGATTTTG 59.673 41.667 0.15 1.10 46.05 2.44
493 494 4.249181 ACGAACCGTATAACGATTTTGC 57.751 40.909 0.15 0.00 46.05 3.68
494 495 3.241741 ACGAACCGTATAACGATTTTGCG 60.242 43.478 0.15 0.00 46.05 4.85
495 496 3.600346 GAACCGTATAACGATTTTGCGG 58.400 45.455 12.64 12.64 46.05 5.69
496 497 1.935199 ACCGTATAACGATTTTGCGGG 59.065 47.619 16.17 1.50 46.05 6.13
497 498 2.203401 CCGTATAACGATTTTGCGGGA 58.797 47.619 0.15 0.00 46.05 5.14
498 499 2.803956 CCGTATAACGATTTTGCGGGAT 59.196 45.455 0.15 0.00 46.05 3.85
499 500 3.363575 CCGTATAACGATTTTGCGGGATG 60.364 47.826 0.15 0.00 46.05 3.51
500 501 3.363575 CGTATAACGATTTTGCGGGATGG 60.364 47.826 0.00 0.00 46.05 3.51
501 502 2.404923 TAACGATTTTGCGGGATGGA 57.595 45.000 0.00 0.00 35.12 3.41
502 503 1.094785 AACGATTTTGCGGGATGGAG 58.905 50.000 0.00 0.00 35.12 3.86
503 504 0.035439 ACGATTTTGCGGGATGGAGT 60.035 50.000 0.00 0.00 35.12 3.85
504 505 1.094785 CGATTTTGCGGGATGGAGTT 58.905 50.000 0.00 0.00 0.00 3.01
505 506 2.285083 CGATTTTGCGGGATGGAGTTA 58.715 47.619 0.00 0.00 0.00 2.24
506 507 2.878406 CGATTTTGCGGGATGGAGTTAT 59.122 45.455 0.00 0.00 0.00 1.89
507 508 3.058914 CGATTTTGCGGGATGGAGTTATC 60.059 47.826 0.00 0.00 0.00 1.75
508 509 3.644966 TTTTGCGGGATGGAGTTATCT 57.355 42.857 0.00 0.00 0.00 1.98
509 510 2.910688 TTGCGGGATGGAGTTATCTC 57.089 50.000 0.00 0.00 39.76 2.75
510 511 1.788229 TGCGGGATGGAGTTATCTCA 58.212 50.000 3.30 0.00 42.05 3.27
511 512 2.329267 TGCGGGATGGAGTTATCTCAT 58.671 47.619 3.30 0.00 42.05 2.90
512 513 2.300152 TGCGGGATGGAGTTATCTCATC 59.700 50.000 3.30 0.00 42.05 2.92
513 514 2.354203 GCGGGATGGAGTTATCTCATCC 60.354 54.545 11.82 11.82 41.75 3.51
514 515 2.899900 CGGGATGGAGTTATCTCATCCA 59.100 50.000 19.23 5.35 46.69 3.41
515 516 3.324846 CGGGATGGAGTTATCTCATCCAA 59.675 47.826 19.23 1.04 45.82 3.53
516 517 4.019860 CGGGATGGAGTTATCTCATCCAAT 60.020 45.833 19.23 4.47 45.82 3.16
517 518 5.513788 CGGGATGGAGTTATCTCATCCAATT 60.514 44.000 19.23 0.00 45.82 2.32
518 519 5.709164 GGGATGGAGTTATCTCATCCAATTG 59.291 44.000 19.23 0.00 45.82 2.32
519 520 5.709164 GGATGGAGTTATCTCATCCAATTGG 59.291 44.000 19.08 19.08 45.82 3.16
520 521 5.715439 TGGAGTTATCTCATCCAATTGGT 57.285 39.130 23.76 8.93 40.13 3.67
521 522 6.078456 TGGAGTTATCTCATCCAATTGGTT 57.922 37.500 23.76 13.38 40.13 3.67
522 523 7.206789 TGGAGTTATCTCATCCAATTGGTTA 57.793 36.000 23.76 6.34 40.13 2.85
523 524 7.638444 TGGAGTTATCTCATCCAATTGGTTAA 58.362 34.615 23.76 5.54 40.13 2.01
524 525 8.281531 TGGAGTTATCTCATCCAATTGGTTAAT 58.718 33.333 23.76 7.84 40.13 1.40
525 526 8.787852 GGAGTTATCTCATCCAATTGGTTAATC 58.212 37.037 23.76 8.23 42.05 1.75
526 527 9.342308 GAGTTATCTCATCCAATTGGTTAATCA 57.658 33.333 23.76 3.96 40.18 2.57
527 528 9.125026 AGTTATCTCATCCAATTGGTTAATCAC 57.875 33.333 23.76 11.99 36.34 3.06
528 529 9.125026 GTTATCTCATCCAATTGGTTAATCACT 57.875 33.333 23.76 6.43 36.34 3.41
529 530 9.699410 TTATCTCATCCAATTGGTTAATCACTT 57.301 29.630 23.76 5.31 36.34 3.16
530 531 7.395190 TCTCATCCAATTGGTTAATCACTTG 57.605 36.000 23.76 10.94 36.34 3.16
531 532 7.174413 TCTCATCCAATTGGTTAATCACTTGA 58.826 34.615 23.76 12.00 36.34 3.02
532 533 7.669304 TCTCATCCAATTGGTTAATCACTTGAA 59.331 33.333 23.76 0.46 36.34 2.69
533 534 7.829725 TCATCCAATTGGTTAATCACTTGAAG 58.170 34.615 23.76 8.76 36.34 3.02
534 535 7.669304 TCATCCAATTGGTTAATCACTTGAAGA 59.331 33.333 23.76 9.43 36.34 2.87
535 536 8.472413 CATCCAATTGGTTAATCACTTGAAGAT 58.528 33.333 23.76 10.96 36.34 2.40
536 537 9.699410 ATCCAATTGGTTAATCACTTGAAGATA 57.301 29.630 23.76 0.00 36.34 1.98
537 538 9.527157 TCCAATTGGTTAATCACTTGAAGATAA 57.473 29.630 23.76 0.00 36.34 1.75
542 543 9.793259 TTGGTTAATCACTTGAAGATAAAGAGT 57.207 29.630 0.00 0.00 0.00 3.24
645 646 7.279313 GCTTACACAGAAAGAATAATAACCCGA 59.721 37.037 0.00 0.00 0.00 5.14
670 672 9.319143 GACTTAAGCAGACACATCAATAATAGT 57.681 33.333 1.29 0.00 0.00 2.12
678 680 7.874528 CAGACACATCAATAATAGTAGATGCCA 59.125 37.037 0.00 0.00 41.08 4.92
742 744 5.127519 TGCTTACAAACTACGCCCTCTATTA 59.872 40.000 0.00 0.00 0.00 0.98
831 833 4.675029 CGGGCCGTCGTTGTCCTT 62.675 66.667 19.97 0.00 0.00 3.36
979 985 3.698463 GTCCGTGGTGCGTCGTTG 61.698 66.667 0.00 0.00 39.32 4.10
1344 1382 1.004161 GGCCTCCTCAGCTTCTTCTTT 59.996 52.381 0.00 0.00 0.00 2.52
1517 1584 9.950858 TTTCGCGATTTTCAAATATTGATTTTC 57.049 25.926 10.88 0.00 39.84 2.29
1534 1601 8.596271 TTGATTTTCGATACTGACAAGTAACA 57.404 30.769 0.00 0.00 42.17 2.41
1535 1602 8.596271 TGATTTTCGATACTGACAAGTAACAA 57.404 30.769 0.00 0.00 42.17 2.83
1536 1603 9.047371 TGATTTTCGATACTGACAAGTAACAAA 57.953 29.630 0.00 0.00 42.17 2.83
1537 1604 9.872757 GATTTTCGATACTGACAAGTAACAAAA 57.127 29.630 0.00 0.00 42.17 2.44
1539 1606 9.872757 TTTTCGATACTGACAAGTAACAAAATC 57.127 29.630 0.00 0.00 42.17 2.17
1540 1607 7.273188 TCGATACTGACAAGTAACAAAATCG 57.727 36.000 0.00 0.00 42.17 3.34
1541 1608 7.085746 TCGATACTGACAAGTAACAAAATCGA 58.914 34.615 0.00 0.00 42.17 3.59
1543 1610 7.061905 CGATACTGACAAGTAACAAAATCGAGT 59.938 37.037 0.00 0.00 42.17 4.18
1544 1611 6.920569 ACTGACAAGTAACAAAATCGAGTT 57.079 33.333 0.00 0.00 33.79 3.01
1545 1612 7.316544 ACTGACAAGTAACAAAATCGAGTTT 57.683 32.000 4.77 4.77 33.79 2.66
1547 1615 7.696453 ACTGACAAGTAACAAAATCGAGTTTTG 59.304 33.333 21.25 21.25 46.63 2.44
1591 1659 8.603181 ACATACTTTTTCTTTTTGAACACATGC 58.397 29.630 0.00 0.00 33.88 4.06
1625 1699 5.949952 ACTAAGTCACCCTTCAAACAACTTT 59.050 36.000 0.00 0.00 34.46 2.66
1628 1702 4.334481 AGTCACCCTTCAAACAACTTTACG 59.666 41.667 0.00 0.00 0.00 3.18
1645 1719 8.953990 CAACTTTACGGATTACAAACTCTTTTG 58.046 33.333 0.00 0.00 46.61 2.44
1681 1755 1.541015 GCAAAAAGACCAAAGGCCAGG 60.541 52.381 5.01 6.41 0.00 4.45
1682 1756 2.038659 CAAAAAGACCAAAGGCCAGGA 58.961 47.619 14.97 0.00 0.00 3.86
1707 1783 5.692204 CGAATTACAGACTATAGCCCACAAG 59.308 44.000 0.00 0.00 0.00 3.16
1726 1802 6.073602 CCACAAGAGGCAAATTTTAAAGCTTC 60.074 38.462 0.00 3.10 33.82 3.86
1796 1974 8.474025 TCAAGCAAATTTCTCTTTTGGAACTAA 58.526 29.630 0.00 0.00 35.18 2.24
1800 1978 7.382488 GCAAATTTCTCTTTTGGAACTAACCTC 59.618 37.037 0.00 0.00 35.18 3.85
1818 1996 4.401925 ACCTCTTTTGTGGATTTCTCTGG 58.598 43.478 0.00 0.00 36.91 3.86
1821 1999 5.356470 CCTCTTTTGTGGATTTCTCTGGATC 59.644 44.000 0.00 0.00 35.19 3.36
1893 2083 1.139058 CCAGGACCCCTATTTCACGAG 59.861 57.143 0.00 0.00 29.64 4.18
2063 2253 3.873801 GCTTCATTGGGCTCTTTGGTCTA 60.874 47.826 0.00 0.00 0.00 2.59
2066 2256 3.330701 TCATTGGGCTCTTTGGTCTAGTT 59.669 43.478 0.00 0.00 0.00 2.24
2087 2279 4.737855 TCCTCTGAGGAAGGTAAAATCG 57.262 45.455 23.76 0.00 42.51 3.34
2206 2431 4.688419 CCAAGCGGCACTGCAACG 62.688 66.667 1.45 0.00 37.31 4.10
2294 2519 8.045176 ACCATTTCTATTTTTGAGCTAGTCAC 57.955 34.615 0.00 0.00 33.71 3.67
2462 2687 4.016666 TCAACCAATTCCCATCATTAGGGT 60.017 41.667 0.00 0.00 46.82 4.34
2476 2701 2.961531 TAGGGTTGCAAGCTTACCAA 57.038 45.000 26.33 12.12 33.51 3.67
2534 2759 6.263168 GTCTCCAGTCAAATTTCTCCAAAGAA 59.737 38.462 0.00 0.00 39.78 2.52
2544 2769 2.270923 TCTCCAAAGAATGATGCGTCG 58.729 47.619 0.58 0.00 0.00 5.12
2613 2838 3.810386 GGGAAGTGATCGATTTAGGAAGC 59.190 47.826 0.00 0.00 0.00 3.86
2628 2857 4.686839 AGGAAGCAAGCTCGTTTATTTC 57.313 40.909 0.00 0.00 0.00 2.17
2638 2867 7.589954 GCAAGCTCGTTTATTTCTTCAGTTAAA 59.410 33.333 0.00 0.00 0.00 1.52
2647 2876 8.880878 TTATTTCTTCAGTTAAAGCCAAAACC 57.119 30.769 0.00 0.00 0.00 3.27
2651 2880 4.759516 TCAGTTAAAGCCAAAACCGATC 57.240 40.909 0.00 0.00 0.00 3.69
2653 2882 3.254657 CAGTTAAAGCCAAAACCGATCCA 59.745 43.478 0.00 0.00 0.00 3.41
2701 2931 3.993103 CGTCGGCGTATCTTGGAC 58.007 61.111 6.85 0.00 0.00 4.02
2702 2932 1.588139 CGTCGGCGTATCTTGGACC 60.588 63.158 6.85 0.00 0.00 4.46
2703 2933 1.514087 GTCGGCGTATCTTGGACCA 59.486 57.895 6.85 0.00 0.00 4.02
2704 2934 0.804933 GTCGGCGTATCTTGGACCAC 60.805 60.000 6.85 0.00 0.00 4.16
2705 2935 0.968901 TCGGCGTATCTTGGACCACT 60.969 55.000 6.85 0.00 0.00 4.00
2706 2936 0.527817 CGGCGTATCTTGGACCACTC 60.528 60.000 0.00 0.00 0.00 3.51
2707 2937 0.527817 GGCGTATCTTGGACCACTCG 60.528 60.000 0.00 0.00 0.00 4.18
2708 2938 1.146358 GCGTATCTTGGACCACTCGC 61.146 60.000 0.00 2.98 36.06 5.03
2709 2939 0.866061 CGTATCTTGGACCACTCGCG 60.866 60.000 0.00 0.00 0.00 5.87
2710 2940 1.141019 TATCTTGGACCACTCGCGC 59.859 57.895 0.00 0.00 0.00 6.86
2720 2950 2.665185 ACTCGCGCTTGGGTGAAC 60.665 61.111 5.56 0.00 0.00 3.18
2732 2964 4.708177 CTTGGGTGAACTATACATGGAGG 58.292 47.826 0.00 0.00 0.00 4.30
2733 2965 2.438021 TGGGTGAACTATACATGGAGGC 59.562 50.000 0.00 0.00 0.00 4.70
2735 2967 3.244249 GGGTGAACTATACATGGAGGCTC 60.244 52.174 5.78 5.78 0.00 4.70
2741 2973 6.599244 TGAACTATACATGGAGGCTCTTTTTG 59.401 38.462 15.23 9.32 0.00 2.44
2781 3013 3.542969 ACCTGGGCCTTACAGAAAATT 57.457 42.857 4.53 0.00 38.20 1.82
2787 3019 4.044825 TGGGCCTTACAGAAAATTAGGGAA 59.955 41.667 4.53 0.00 0.00 3.97
2788 3020 4.401519 GGGCCTTACAGAAAATTAGGGAAC 59.598 45.833 0.84 0.00 0.00 3.62
2824 3056 7.187244 TGGAATGCACATTGTTTTGTTTATG 57.813 32.000 0.00 0.00 0.00 1.90
2827 3059 7.798052 GGAATGCACATTGTTTTGTTTATGAAC 59.202 33.333 0.00 0.00 36.29 3.18
2831 3063 6.478344 GCACATTGTTTTGTTTATGAACCAGA 59.522 34.615 0.00 0.00 34.80 3.86
2904 3136 9.054922 CAAAATCAACCAATTGTTCATAAGGTT 57.945 29.630 4.43 0.00 39.76 3.50
2926 3164 7.025365 GGTTATATTTGTGTTTTCTCGAACCC 58.975 38.462 0.00 0.00 0.00 4.11
2958 3198 4.481368 AAGTAATATGACTTGCCGACCA 57.519 40.909 4.52 0.00 38.25 4.02
2959 3199 3.793559 AGTAATATGACTTGCCGACCAC 58.206 45.455 0.00 0.00 0.00 4.16
2960 3200 3.451178 AGTAATATGACTTGCCGACCACT 59.549 43.478 0.00 0.00 0.00 4.00
2961 3201 4.647853 AGTAATATGACTTGCCGACCACTA 59.352 41.667 0.00 0.00 0.00 2.74
2962 3202 4.481368 AATATGACTTGCCGACCACTAA 57.519 40.909 0.00 0.00 0.00 2.24
2966 3206 2.215196 GACTTGCCGACCACTAAAACA 58.785 47.619 0.00 0.00 0.00 2.83
2968 3208 3.018149 ACTTGCCGACCACTAAAACAAA 58.982 40.909 0.00 0.00 0.00 2.83
3042 3284 3.666902 CGTGTTAGCTAATTGTGTGCACC 60.667 47.826 15.69 6.37 0.00 5.01
3275 3519 4.101119 CCTACCTATGTCGGAGTTGGAATT 59.899 45.833 0.00 0.00 28.73 2.17
4149 4399 8.463930 TTTGATAATATTGGGATCAGTGGAAC 57.536 34.615 0.00 0.00 31.50 3.62
4196 4446 1.401761 TTTCCGCAGCATGGCAATAT 58.598 45.000 0.00 0.00 35.86 1.28
4484 4734 0.248215 CTTGATTTGCGGCGATGGAC 60.248 55.000 12.98 0.00 0.00 4.02
4585 4835 1.981256 ACGACAAGGTGGATGCTTTT 58.019 45.000 0.00 0.00 0.00 2.27
4627 4877 5.590976 ATCTTCAGGGAAAAGGAGAAGTT 57.409 39.130 0.00 0.00 37.53 2.66
4664 4914 3.972133 AGATTCAGATTGATGCCAACCA 58.028 40.909 0.00 0.00 34.72 3.67
4690 4945 7.648142 TCTGTGAAATTTACATTTGTCCTGTC 58.352 34.615 0.00 0.00 32.35 3.51
4770 5025 7.684670 TGAAACTATGTACAAAGCGATGAATC 58.315 34.615 0.00 0.00 0.00 2.52
4828 5085 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4829 5086 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4839 5096 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4841 5098 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4874 5131 2.430465 CAGGAGTTGCAGCAATGTAGT 58.570 47.619 11.96 0.00 0.00 2.73
4875 5132 3.599343 CAGGAGTTGCAGCAATGTAGTA 58.401 45.455 11.96 0.00 0.00 1.82
4877 5134 5.359756 CAGGAGTTGCAGCAATGTAGTATA 58.640 41.667 11.96 0.00 0.00 1.47
4985 5247 3.767673 ACCGAGAAGATTGCCAGTAGTAA 59.232 43.478 0.00 0.00 0.00 2.24
5065 5332 3.703420 ACGAAATATACTCAGACGTGCC 58.297 45.455 0.00 0.00 0.00 5.01
5568 5842 8.940768 TTTTGAATTTACTGTCCTTCAAAAGG 57.059 30.769 21.28 0.00 45.43 3.11
5579 5853 2.329379 CTTCAAAAGGAGACGAGTCCG 58.671 52.381 0.00 0.00 42.05 4.79
5590 5864 2.710902 CGAGTCCGGGCTCACATGA 61.711 63.158 33.89 0.00 35.33 3.07
5594 5868 1.003839 TCCGGGCTCACATGACAAC 60.004 57.895 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.056125 TGTCTCGACGGCAGGCTG 62.056 66.667 10.94 10.94 0.00 4.85
2 3 4.057428 GTGTCTCGACGGCAGGCT 62.057 66.667 0.00 0.00 0.00 4.58
4 5 2.179517 GAGTGTCTCGACGGCAGG 59.820 66.667 0.00 0.00 0.00 4.85
13 14 1.803519 CGCCTGCTTCGAGTGTCTC 60.804 63.158 0.00 0.00 0.00 3.36
14 15 2.259818 CGCCTGCTTCGAGTGTCT 59.740 61.111 0.00 0.00 0.00 3.41
15 16 3.482783 GCGCCTGCTTCGAGTGTC 61.483 66.667 0.00 0.00 38.39 3.67
71 72 2.175184 CTTGTGAAAGCGAGCCCACG 62.175 60.000 0.00 0.00 32.58 4.94
72 73 1.576421 CTTGTGAAAGCGAGCCCAC 59.424 57.895 0.00 0.00 0.00 4.61
73 74 2.260869 GCTTGTGAAAGCGAGCCCA 61.261 57.895 0.00 0.00 39.39 5.36
74 75 2.563427 GCTTGTGAAAGCGAGCCC 59.437 61.111 0.00 0.00 39.39 5.19
80 81 1.201855 CGTCATCGAGCTTGTGAAAGC 60.202 52.381 0.00 2.21 45.81 3.51
81 82 1.201855 GCGTCATCGAGCTTGTGAAAG 60.202 52.381 0.00 4.05 39.71 2.62
82 83 0.790207 GCGTCATCGAGCTTGTGAAA 59.210 50.000 0.00 0.00 39.71 2.69
83 84 0.038251 AGCGTCATCGAGCTTGTGAA 60.038 50.000 0.00 0.00 41.52 3.18
84 85 0.456824 GAGCGTCATCGAGCTTGTGA 60.457 55.000 0.00 1.68 44.69 3.58
85 86 0.457509 AGAGCGTCATCGAGCTTGTG 60.458 55.000 0.00 0.00 44.69 3.33
86 87 0.244994 AAGAGCGTCATCGAGCTTGT 59.755 50.000 0.00 0.00 44.69 3.16
87 88 1.060266 CAAAGAGCGTCATCGAGCTTG 59.940 52.381 0.00 0.00 44.69 4.01
88 89 1.067565 TCAAAGAGCGTCATCGAGCTT 60.068 47.619 0.00 0.00 44.69 3.74
90 91 0.642800 GTCAAAGAGCGTCATCGAGC 59.357 55.000 0.00 0.00 39.71 5.03
91 92 1.272781 GGTCAAAGAGCGTCATCGAG 58.727 55.000 0.00 0.00 39.71 4.04
92 93 0.601057 TGGTCAAAGAGCGTCATCGA 59.399 50.000 0.00 0.00 39.71 3.59
93 94 1.126846 GTTGGTCAAAGAGCGTCATCG 59.873 52.381 0.00 0.00 40.37 3.84
94 95 1.464997 GGTTGGTCAAAGAGCGTCATC 59.535 52.381 0.00 0.00 32.15 2.92
95 96 1.202758 TGGTTGGTCAAAGAGCGTCAT 60.203 47.619 0.00 0.00 32.15 3.06
96 97 0.179234 TGGTTGGTCAAAGAGCGTCA 59.821 50.000 0.00 0.00 32.15 4.35
97 98 0.586802 GTGGTTGGTCAAAGAGCGTC 59.413 55.000 0.00 0.00 32.15 5.19
98 99 0.818040 GGTGGTTGGTCAAAGAGCGT 60.818 55.000 0.00 0.00 32.15 5.07
99 100 0.817634 TGGTGGTTGGTCAAAGAGCG 60.818 55.000 0.00 0.00 32.15 5.03
100 101 1.338020 CTTGGTGGTTGGTCAAAGAGC 59.662 52.381 0.00 0.00 0.00 4.09
101 102 2.880890 CTCTTGGTGGTTGGTCAAAGAG 59.119 50.000 0.00 0.00 0.00 2.85
102 103 2.422803 CCTCTTGGTGGTTGGTCAAAGA 60.423 50.000 0.00 0.00 0.00 2.52
103 104 1.956477 CCTCTTGGTGGTTGGTCAAAG 59.044 52.381 0.00 0.00 0.00 2.77
104 105 1.286553 ACCTCTTGGTGGTTGGTCAAA 59.713 47.619 0.00 0.00 46.51 2.69
105 106 0.923358 ACCTCTTGGTGGTTGGTCAA 59.077 50.000 0.00 0.00 46.51 3.18
106 107 2.627771 ACCTCTTGGTGGTTGGTCA 58.372 52.632 0.00 0.00 46.51 4.02
114 115 2.821650 GGCTCATGCAACCTCTTGGTG 61.822 57.143 0.00 0.00 42.70 4.17
115 116 0.610232 GGCTCATGCAACCTCTTGGT 60.610 55.000 0.00 0.00 41.63 3.67
116 117 0.609957 TGGCTCATGCAACCTCTTGG 60.610 55.000 0.00 0.00 41.91 3.61
117 118 0.809385 CTGGCTCATGCAACCTCTTG 59.191 55.000 0.00 0.00 41.91 3.02
118 119 0.694771 TCTGGCTCATGCAACCTCTT 59.305 50.000 0.00 0.00 41.91 2.85
119 120 0.252479 CTCTGGCTCATGCAACCTCT 59.748 55.000 0.00 0.00 41.91 3.69
120 121 0.251354 TCTCTGGCTCATGCAACCTC 59.749 55.000 0.00 0.00 41.91 3.85
121 122 0.917533 ATCTCTGGCTCATGCAACCT 59.082 50.000 0.00 0.00 41.91 3.50
122 123 1.404391 CAATCTCTGGCTCATGCAACC 59.596 52.381 0.00 0.00 41.91 3.77
123 124 2.355132 CTCAATCTCTGGCTCATGCAAC 59.645 50.000 0.00 0.00 41.91 4.17
124 125 2.640184 CTCAATCTCTGGCTCATGCAA 58.360 47.619 0.00 0.00 41.91 4.08
125 126 1.746171 GCTCAATCTCTGGCTCATGCA 60.746 52.381 0.00 0.00 41.91 3.96
126 127 0.945813 GCTCAATCTCTGGCTCATGC 59.054 55.000 0.00 0.00 38.76 4.06
127 128 2.485903 GAGCTCAATCTCTGGCTCATG 58.514 52.381 9.40 0.00 42.92 3.07
128 129 1.417145 GGAGCTCAATCTCTGGCTCAT 59.583 52.381 17.19 0.00 44.12 2.90
129 130 0.829333 GGAGCTCAATCTCTGGCTCA 59.171 55.000 17.19 0.00 44.12 4.26
130 131 0.106521 GGGAGCTCAATCTCTGGCTC 59.893 60.000 17.19 0.00 42.79 4.70
131 132 1.344191 GGGGAGCTCAATCTCTGGCT 61.344 60.000 17.19 0.00 35.15 4.75
132 133 1.148048 GGGGAGCTCAATCTCTGGC 59.852 63.158 17.19 0.00 33.70 4.85
133 134 1.445095 CGGGGAGCTCAATCTCTGG 59.555 63.158 17.19 0.00 33.70 3.86
134 135 1.227497 GCGGGGAGCTCAATCTCTG 60.227 63.158 17.19 5.51 44.04 3.35
135 136 3.225235 GCGGGGAGCTCAATCTCT 58.775 61.111 17.19 0.00 44.04 3.10
145 146 3.965539 CTTCCTGTGCAGCGGGGAG 62.966 68.421 12.44 10.13 42.63 4.30
146 147 4.020617 CTTCCTGTGCAGCGGGGA 62.021 66.667 12.44 5.01 43.94 4.81
151 152 3.730761 CACCGCTTCCTGTGCAGC 61.731 66.667 0.00 0.00 0.00 5.25
152 153 3.052082 CCACCGCTTCCTGTGCAG 61.052 66.667 0.00 0.00 0.00 4.41
166 167 4.778143 ATCTTCACCGGCCGCCAC 62.778 66.667 22.85 0.00 0.00 5.01
167 168 4.776322 CATCTTCACCGGCCGCCA 62.776 66.667 22.85 1.32 0.00 5.69
176 177 3.869272 CAGCGGCGCCATCTTCAC 61.869 66.667 30.40 5.94 0.00 3.18
177 178 3.604129 TTCAGCGGCGCCATCTTCA 62.604 57.895 30.40 8.52 0.00 3.02
178 179 2.819595 TTCAGCGGCGCCATCTTC 60.820 61.111 30.40 9.37 0.00 2.87
179 180 3.127533 GTTCAGCGGCGCCATCTT 61.128 61.111 30.40 6.49 0.00 2.40
189 190 3.793144 GCCTCAAGCCGTTCAGCG 61.793 66.667 0.00 0.00 38.01 5.18
190 191 3.793144 CGCCTCAAGCCGTTCAGC 61.793 66.667 0.00 0.00 38.78 4.26
191 192 2.048222 TCGCCTCAAGCCGTTCAG 60.048 61.111 0.00 0.00 38.78 3.02
192 193 1.529152 TAGTCGCCTCAAGCCGTTCA 61.529 55.000 0.00 0.00 38.78 3.18
193 194 0.179108 ATAGTCGCCTCAAGCCGTTC 60.179 55.000 0.00 0.00 38.78 3.95
194 195 0.460284 CATAGTCGCCTCAAGCCGTT 60.460 55.000 0.00 0.00 38.78 4.44
195 196 1.141881 CATAGTCGCCTCAAGCCGT 59.858 57.895 0.00 0.00 38.78 5.68
196 197 1.592669 CCATAGTCGCCTCAAGCCG 60.593 63.158 0.00 0.00 38.78 5.52
197 198 0.178068 TTCCATAGTCGCCTCAAGCC 59.822 55.000 0.00 0.00 38.78 4.35
198 199 1.137086 TCTTCCATAGTCGCCTCAAGC 59.863 52.381 0.00 0.00 38.52 4.01
199 200 2.428890 ACTCTTCCATAGTCGCCTCAAG 59.571 50.000 0.00 0.00 0.00 3.02
200 201 2.457598 ACTCTTCCATAGTCGCCTCAA 58.542 47.619 0.00 0.00 0.00 3.02
201 202 2.145397 ACTCTTCCATAGTCGCCTCA 57.855 50.000 0.00 0.00 0.00 3.86
202 203 2.031857 CGTACTCTTCCATAGTCGCCTC 60.032 54.545 0.00 0.00 0.00 4.70
203 204 1.948145 CGTACTCTTCCATAGTCGCCT 59.052 52.381 0.00 0.00 0.00 5.52
204 205 1.945394 TCGTACTCTTCCATAGTCGCC 59.055 52.381 0.00 0.00 0.00 5.54
205 206 2.602694 GCTCGTACTCTTCCATAGTCGC 60.603 54.545 0.00 0.00 0.00 5.19
206 207 2.873472 AGCTCGTACTCTTCCATAGTCG 59.127 50.000 0.00 0.00 0.00 4.18
207 208 3.878103 TGAGCTCGTACTCTTCCATAGTC 59.122 47.826 9.64 0.00 37.58 2.59
208 209 3.628487 GTGAGCTCGTACTCTTCCATAGT 59.372 47.826 9.64 0.00 37.58 2.12
209 210 3.003897 GGTGAGCTCGTACTCTTCCATAG 59.996 52.174 9.64 0.00 37.58 2.23
210 211 2.950309 GGTGAGCTCGTACTCTTCCATA 59.050 50.000 9.64 0.00 37.58 2.74
211 212 1.751924 GGTGAGCTCGTACTCTTCCAT 59.248 52.381 9.64 0.00 37.58 3.41
212 213 1.174783 GGTGAGCTCGTACTCTTCCA 58.825 55.000 9.64 0.00 37.58 3.53
213 214 1.174783 TGGTGAGCTCGTACTCTTCC 58.825 55.000 9.64 10.31 37.58 3.46
214 215 2.597520 GTTGGTGAGCTCGTACTCTTC 58.402 52.381 9.64 0.00 37.58 2.87
215 216 1.068472 CGTTGGTGAGCTCGTACTCTT 60.068 52.381 9.64 0.00 37.58 2.85
216 217 0.522180 CGTTGGTGAGCTCGTACTCT 59.478 55.000 9.64 0.00 37.58 3.24
217 218 0.240411 ACGTTGGTGAGCTCGTACTC 59.760 55.000 9.64 0.00 34.78 2.59
218 219 0.672342 AACGTTGGTGAGCTCGTACT 59.328 50.000 9.64 0.00 35.49 2.73
219 220 1.058404 GAACGTTGGTGAGCTCGTAC 58.942 55.000 5.00 2.08 35.49 3.67
220 221 0.956633 AGAACGTTGGTGAGCTCGTA 59.043 50.000 5.00 0.00 35.49 3.43
221 222 0.104304 AAGAACGTTGGTGAGCTCGT 59.896 50.000 5.00 0.00 38.15 4.18
222 223 1.217882 AAAGAACGTTGGTGAGCTCG 58.782 50.000 5.00 0.00 0.00 5.03
223 224 2.612212 TCAAAAGAACGTTGGTGAGCTC 59.388 45.455 5.00 6.82 0.00 4.09
224 225 2.614057 CTCAAAAGAACGTTGGTGAGCT 59.386 45.455 5.00 0.00 0.00 4.09
225 226 2.287009 CCTCAAAAGAACGTTGGTGAGC 60.287 50.000 5.00 0.00 32.86 4.26
226 227 2.287009 GCCTCAAAAGAACGTTGGTGAG 60.287 50.000 5.00 12.17 33.77 3.51
227 228 1.673920 GCCTCAAAAGAACGTTGGTGA 59.326 47.619 5.00 2.58 0.00 4.02
228 229 1.269051 GGCCTCAAAAGAACGTTGGTG 60.269 52.381 5.00 0.00 0.00 4.17
229 230 1.029681 GGCCTCAAAAGAACGTTGGT 58.970 50.000 5.00 0.00 0.00 3.67
230 231 0.040425 CGGCCTCAAAAGAACGTTGG 60.040 55.000 5.00 0.00 0.00 3.77
231 232 0.040425 CCGGCCTCAAAAGAACGTTG 60.040 55.000 5.00 0.00 0.00 4.10
232 233 1.792118 GCCGGCCTCAAAAGAACGTT 61.792 55.000 18.11 0.00 0.00 3.99
233 234 2.258726 GCCGGCCTCAAAAGAACGT 61.259 57.895 18.11 0.00 0.00 3.99
234 235 2.561373 GCCGGCCTCAAAAGAACG 59.439 61.111 18.11 0.00 0.00 3.95
235 236 1.512156 TTCGCCGGCCTCAAAAGAAC 61.512 55.000 23.46 0.00 0.00 3.01
236 237 1.228003 TTCGCCGGCCTCAAAAGAA 60.228 52.632 23.46 13.85 0.00 2.52
237 238 1.964373 GTTCGCCGGCCTCAAAAGA 60.964 57.895 23.46 7.45 0.00 2.52
238 239 1.791103 TTGTTCGCCGGCCTCAAAAG 61.791 55.000 23.46 4.61 0.00 2.27
239 240 1.791103 CTTGTTCGCCGGCCTCAAAA 61.791 55.000 23.46 8.44 0.00 2.44
240 241 2.203224 TTGTTCGCCGGCCTCAAA 60.203 55.556 23.46 8.10 0.00 2.69
241 242 2.102109 TACTTGTTCGCCGGCCTCAA 62.102 55.000 23.46 20.88 0.00 3.02
242 243 1.895020 ATACTTGTTCGCCGGCCTCA 61.895 55.000 23.46 14.75 0.00 3.86
243 244 0.743345 AATACTTGTTCGCCGGCCTC 60.743 55.000 23.46 12.06 0.00 4.70
244 245 0.538118 TAATACTTGTTCGCCGGCCT 59.462 50.000 23.46 0.00 0.00 5.19
245 246 0.654160 GTAATACTTGTTCGCCGGCC 59.346 55.000 23.46 7.69 0.00 6.13
246 247 0.654160 GGTAATACTTGTTCGCCGGC 59.346 55.000 19.07 19.07 0.00 6.13
247 248 2.199236 GAGGTAATACTTGTTCGCCGG 58.801 52.381 0.00 0.00 0.00 6.13
248 249 2.883574 TGAGGTAATACTTGTTCGCCG 58.116 47.619 0.00 0.00 0.00 6.46
249 250 3.061697 CGTTGAGGTAATACTTGTTCGCC 59.938 47.826 0.00 0.00 0.00 5.54
250 251 3.922240 TCGTTGAGGTAATACTTGTTCGC 59.078 43.478 0.00 0.00 0.00 4.70
251 252 4.919168 TGTCGTTGAGGTAATACTTGTTCG 59.081 41.667 0.00 0.00 0.00 3.95
252 253 6.617953 GCTTGTCGTTGAGGTAATACTTGTTC 60.618 42.308 0.00 0.00 0.00 3.18
253 254 5.178809 GCTTGTCGTTGAGGTAATACTTGTT 59.821 40.000 0.00 0.00 0.00 2.83
254 255 4.689345 GCTTGTCGTTGAGGTAATACTTGT 59.311 41.667 0.00 0.00 0.00 3.16
255 256 4.092968 GGCTTGTCGTTGAGGTAATACTTG 59.907 45.833 0.00 0.00 0.00 3.16
256 257 4.251268 GGCTTGTCGTTGAGGTAATACTT 58.749 43.478 0.00 0.00 0.00 2.24
257 258 3.675228 CGGCTTGTCGTTGAGGTAATACT 60.675 47.826 0.00 0.00 0.00 2.12
258 259 2.601763 CGGCTTGTCGTTGAGGTAATAC 59.398 50.000 0.00 0.00 0.00 1.89
259 260 2.231964 ACGGCTTGTCGTTGAGGTAATA 59.768 45.455 0.00 0.00 40.85 0.98
260 261 1.001633 ACGGCTTGTCGTTGAGGTAAT 59.998 47.619 0.00 0.00 40.85 1.89
261 262 0.390124 ACGGCTTGTCGTTGAGGTAA 59.610 50.000 0.00 0.00 40.85 2.85
262 263 0.319211 CACGGCTTGTCGTTGAGGTA 60.319 55.000 0.00 0.00 41.86 3.08
263 264 1.594293 CACGGCTTGTCGTTGAGGT 60.594 57.895 0.00 0.00 41.86 3.85
264 265 1.284982 CTCACGGCTTGTCGTTGAGG 61.285 60.000 14.53 0.00 41.86 3.86
265 266 1.891060 GCTCACGGCTTGTCGTTGAG 61.891 60.000 16.58 16.58 41.86 3.02
266 267 1.954146 GCTCACGGCTTGTCGTTGA 60.954 57.895 0.00 0.00 41.86 3.18
267 268 2.551270 GCTCACGGCTTGTCGTTG 59.449 61.111 0.00 0.00 41.86 4.10
268 269 2.665185 GGCTCACGGCTTGTCGTT 60.665 61.111 0.00 0.00 41.86 3.85
289 290 3.873026 ATCTAGCTGCATCGCGGGC 62.873 63.158 15.29 15.29 35.15 6.13
290 291 1.735920 GATCTAGCTGCATCGCGGG 60.736 63.158 6.13 0.00 35.15 6.13
291 292 0.523519 TAGATCTAGCTGCATCGCGG 59.476 55.000 6.13 0.00 38.08 6.46
292 293 2.097304 AGATAGATCTAGCTGCATCGCG 59.903 50.000 19.47 0.00 34.85 5.87
293 294 3.781079 AGATAGATCTAGCTGCATCGC 57.219 47.619 19.47 0.00 34.85 4.58
294 295 7.706159 AGATAAAGATAGATCTAGCTGCATCG 58.294 38.462 20.75 0.00 35.76 3.84
297 298 9.473007 ACATAGATAAAGATAGATCTAGCTGCA 57.527 33.333 20.75 11.98 37.92 4.41
325 326 9.537192 CACGGAGATAACCATACATAAAACTAA 57.463 33.333 0.00 0.00 0.00 2.24
326 327 8.698210 ACACGGAGATAACCATACATAAAACTA 58.302 33.333 0.00 0.00 0.00 2.24
327 328 7.494625 CACACGGAGATAACCATACATAAAACT 59.505 37.037 0.00 0.00 0.00 2.66
328 329 7.279313 ACACACGGAGATAACCATACATAAAAC 59.721 37.037 0.00 0.00 0.00 2.43
329 330 7.332557 ACACACGGAGATAACCATACATAAAA 58.667 34.615 0.00 0.00 0.00 1.52
330 331 6.880484 ACACACGGAGATAACCATACATAAA 58.120 36.000 0.00 0.00 0.00 1.40
331 332 6.474140 ACACACGGAGATAACCATACATAA 57.526 37.500 0.00 0.00 0.00 1.90
332 333 6.322969 AGAACACACGGAGATAACCATACATA 59.677 38.462 0.00 0.00 0.00 2.29
333 334 5.128827 AGAACACACGGAGATAACCATACAT 59.871 40.000 0.00 0.00 0.00 2.29
334 335 4.464951 AGAACACACGGAGATAACCATACA 59.535 41.667 0.00 0.00 0.00 2.29
335 336 5.007385 AGAACACACGGAGATAACCATAC 57.993 43.478 0.00 0.00 0.00 2.39
336 337 6.039047 GTCTAGAACACACGGAGATAACCATA 59.961 42.308 0.00 0.00 0.00 2.74
337 338 4.954202 TCTAGAACACACGGAGATAACCAT 59.046 41.667 0.00 0.00 0.00 3.55
338 339 4.157289 GTCTAGAACACACGGAGATAACCA 59.843 45.833 0.00 0.00 0.00 3.67
339 340 4.670347 GTCTAGAACACACGGAGATAACC 58.330 47.826 0.00 0.00 0.00 2.85
340 341 4.093998 TCGTCTAGAACACACGGAGATAAC 59.906 45.833 0.00 0.00 34.24 1.89
341 342 4.256110 TCGTCTAGAACACACGGAGATAA 58.744 43.478 0.00 0.00 34.24 1.75
342 343 3.865446 TCGTCTAGAACACACGGAGATA 58.135 45.455 0.00 0.00 34.24 1.98
343 344 2.708051 TCGTCTAGAACACACGGAGAT 58.292 47.619 0.00 0.00 34.24 2.75
344 345 2.174363 TCGTCTAGAACACACGGAGA 57.826 50.000 0.00 0.00 34.24 3.71
345 346 2.983402 TTCGTCTAGAACACACGGAG 57.017 50.000 0.00 0.00 33.14 4.63
354 355 6.108687 TCCTCGTTACATAGTTCGTCTAGAA 58.891 40.000 0.00 0.00 36.31 2.10
355 356 5.664457 TCCTCGTTACATAGTTCGTCTAGA 58.336 41.667 0.00 0.00 31.67 2.43
356 357 5.980698 TCCTCGTTACATAGTTCGTCTAG 57.019 43.478 0.00 0.00 31.67 2.43
357 358 5.220472 CGTTCCTCGTTACATAGTTCGTCTA 60.220 44.000 0.00 0.00 34.52 2.59
358 359 4.436584 CGTTCCTCGTTACATAGTTCGTCT 60.437 45.833 0.00 0.00 34.52 4.18
359 360 3.782893 CGTTCCTCGTTACATAGTTCGTC 59.217 47.826 0.00 0.00 34.52 4.20
360 361 3.751621 CGTTCCTCGTTACATAGTTCGT 58.248 45.455 0.00 0.00 34.52 3.85
371 372 8.849236 ACTTGCATAAAAGTTACGTTCCTCGTT 61.849 37.037 0.00 0.00 42.86 3.85
372 373 7.452046 ACTTGCATAAAAGTTACGTTCCTCGT 61.452 38.462 0.00 0.00 42.95 4.18
373 374 4.914312 TGCATAAAAGTTACGTTCCTCG 57.086 40.909 0.00 0.00 46.00 4.63
374 375 6.237313 ACTTGCATAAAAGTTACGTTCCTC 57.763 37.500 0.00 0.00 37.05 3.71
375 376 6.628919 AACTTGCATAAAAGTTACGTTCCT 57.371 33.333 0.00 0.00 46.10 3.36
384 385 9.644993 GCGAAATTTAAAAACTTGCATAAAAGT 57.355 25.926 0.00 0.00 42.21 2.66
385 386 8.817296 CGCGAAATTTAAAAACTTGCATAAAAG 58.183 29.630 0.00 0.00 0.00 2.27
386 387 8.328864 ACGCGAAATTTAAAAACTTGCATAAAA 58.671 25.926 15.93 0.00 0.00 1.52
387 388 7.842484 ACGCGAAATTTAAAAACTTGCATAAA 58.158 26.923 15.93 0.00 0.00 1.40
388 389 7.396190 ACGCGAAATTTAAAAACTTGCATAA 57.604 28.000 15.93 0.00 0.00 1.90
389 390 6.994868 ACGCGAAATTTAAAAACTTGCATA 57.005 29.167 15.93 0.00 0.00 3.14
390 391 5.898630 ACGCGAAATTTAAAAACTTGCAT 57.101 30.435 15.93 0.00 0.00 3.96
391 392 5.108705 CGTACGCGAAATTTAAAAACTTGCA 60.109 36.000 15.93 0.00 41.33 4.08
392 393 5.284370 CGTACGCGAAATTTAAAAACTTGC 58.716 37.500 15.93 0.00 41.33 4.01
393 394 5.284370 GCGTACGCGAAATTTAAAAACTTG 58.716 37.500 26.17 0.00 41.33 3.16
394 395 5.470168 GCGTACGCGAAATTTAAAAACTT 57.530 34.783 26.17 0.00 41.33 2.66
398 399 8.239997 TCGTAAAAGCGTACGCGAAATTTAAAA 61.240 33.333 32.36 20.93 45.12 1.52
399 400 6.829667 TCGTAAAAGCGTACGCGAAATTTAAA 60.830 34.615 32.36 21.20 45.12 1.52
400 401 5.387855 TCGTAAAAGCGTACGCGAAATTTAA 60.388 36.000 32.36 18.15 45.12 1.52
401 402 4.089208 TCGTAAAAGCGTACGCGAAATTTA 59.911 37.500 32.36 27.94 45.12 1.40
402 403 3.121058 TCGTAAAAGCGTACGCGAAATTT 60.121 39.130 32.36 28.81 45.12 1.82
403 404 2.408032 TCGTAAAAGCGTACGCGAAATT 59.592 40.909 32.36 25.31 45.12 1.82
404 405 1.984990 TCGTAAAAGCGTACGCGAAAT 59.015 42.857 32.36 21.92 45.12 2.17
405 406 1.383080 CTCGTAAAAGCGTACGCGAAA 59.617 47.619 32.36 17.60 45.12 3.46
406 407 0.976963 CTCGTAAAAGCGTACGCGAA 59.023 50.000 32.36 17.25 45.12 4.70
407 408 0.165727 TCTCGTAAAAGCGTACGCGA 59.834 50.000 32.36 21.29 45.12 5.87
408 409 1.184481 GATCTCGTAAAAGCGTACGCG 59.816 52.381 32.36 18.28 45.12 6.01
409 410 2.448219 AGATCTCGTAAAAGCGTACGC 58.552 47.619 32.17 32.17 45.12 4.42
410 411 6.729104 AAATAGATCTCGTAAAAGCGTACG 57.271 37.500 11.84 11.84 46.50 3.67
411 412 8.378421 ACAAAAATAGATCTCGTAAAAGCGTAC 58.622 33.333 0.00 0.00 0.00 3.67
412 413 8.377681 CACAAAAATAGATCTCGTAAAAGCGTA 58.622 33.333 0.00 0.00 0.00 4.42
413 414 7.234384 CACAAAAATAGATCTCGTAAAAGCGT 58.766 34.615 0.00 0.00 0.00 5.07
414 415 6.682863 CCACAAAAATAGATCTCGTAAAAGCG 59.317 38.462 0.00 0.00 0.00 4.68
415 416 7.481798 CACCACAAAAATAGATCTCGTAAAAGC 59.518 37.037 0.00 0.00 0.00 3.51
416 417 7.962918 CCACCACAAAAATAGATCTCGTAAAAG 59.037 37.037 0.00 0.00 0.00 2.27
417 418 7.094549 CCCACCACAAAAATAGATCTCGTAAAA 60.095 37.037 0.00 0.00 0.00 1.52
418 419 6.373216 CCCACCACAAAAATAGATCTCGTAAA 59.627 38.462 0.00 0.00 0.00 2.01
419 420 5.878116 CCCACCACAAAAATAGATCTCGTAA 59.122 40.000 0.00 0.00 0.00 3.18
420 421 5.424757 CCCACCACAAAAATAGATCTCGTA 58.575 41.667 0.00 0.00 0.00 3.43
421 422 4.261801 CCCACCACAAAAATAGATCTCGT 58.738 43.478 0.00 0.00 0.00 4.18
422 423 3.065371 GCCCACCACAAAAATAGATCTCG 59.935 47.826 0.00 0.00 0.00 4.04
423 424 3.381590 GGCCCACCACAAAAATAGATCTC 59.618 47.826 0.00 0.00 35.26 2.75
424 425 3.245586 TGGCCCACCACAAAAATAGATCT 60.246 43.478 0.00 0.00 42.67 2.75
425 426 3.096092 TGGCCCACCACAAAAATAGATC 58.904 45.455 0.00 0.00 42.67 2.75
426 427 3.182887 TGGCCCACCACAAAAATAGAT 57.817 42.857 0.00 0.00 42.67 1.98
427 428 2.685106 TGGCCCACCACAAAAATAGA 57.315 45.000 0.00 0.00 42.67 1.98
438 439 1.453197 CCGGAAGTTATGGCCCACC 60.453 63.158 0.00 0.00 0.00 4.61
439 440 2.119029 GCCGGAAGTTATGGCCCAC 61.119 63.158 5.05 0.00 43.06 4.61
440 441 2.274104 GCCGGAAGTTATGGCCCA 59.726 61.111 5.05 0.00 43.06 5.36
444 445 4.654091 ATGATTTTGCCGGAAGTTATGG 57.346 40.909 5.05 0.00 0.00 2.74
445 446 6.966435 AAAATGATTTTGCCGGAAGTTATG 57.034 33.333 5.05 0.00 0.00 1.90
446 447 7.363205 CAAAAATGATTTTGCCGGAAGTTAT 57.637 32.000 5.05 0.00 46.26 1.89
447 448 6.777526 CAAAAATGATTTTGCCGGAAGTTA 57.222 33.333 5.05 0.00 46.26 2.24
448 449 5.671742 CAAAAATGATTTTGCCGGAAGTT 57.328 34.783 5.05 0.00 46.26 2.66
456 457 6.746583 ACGGTTCGTCCAAAAATGATTTTGC 61.747 40.000 3.62 0.00 41.53 3.68
457 458 4.742659 ACGGTTCGTCCAAAAATGATTTTG 59.257 37.500 3.62 6.98 41.80 2.44
458 459 4.939271 ACGGTTCGTCCAAAAATGATTTT 58.061 34.783 0.00 0.00 35.62 1.82
459 460 4.577834 ACGGTTCGTCCAAAAATGATTT 57.422 36.364 0.00 0.00 33.69 2.17
460 461 5.890424 ATACGGTTCGTCCAAAAATGATT 57.110 34.783 0.00 0.00 41.54 2.57
461 462 6.455913 CGTTATACGGTTCGTCCAAAAATGAT 60.456 38.462 0.00 0.00 41.54 2.45
462 463 5.163972 CGTTATACGGTTCGTCCAAAAATGA 60.164 40.000 0.00 0.00 41.54 2.57
463 464 5.016985 CGTTATACGGTTCGTCCAAAAATG 58.983 41.667 0.00 0.00 41.54 2.32
464 465 4.928615 TCGTTATACGGTTCGTCCAAAAAT 59.071 37.500 0.00 0.00 42.81 1.82
465 466 4.302455 TCGTTATACGGTTCGTCCAAAAA 58.698 39.130 0.00 0.00 42.81 1.94
466 467 3.906998 TCGTTATACGGTTCGTCCAAAA 58.093 40.909 0.00 0.00 42.81 2.44
467 468 3.567576 TCGTTATACGGTTCGTCCAAA 57.432 42.857 0.00 0.00 42.81 3.28
468 469 3.781079 ATCGTTATACGGTTCGTCCAA 57.219 42.857 0.00 0.00 42.81 3.53
469 470 3.781079 AATCGTTATACGGTTCGTCCA 57.219 42.857 0.00 0.00 41.72 4.02
470 471 4.780013 GCAAAATCGTTATACGGTTCGTCC 60.780 45.833 0.00 0.00 45.17 4.79
471 472 4.258331 GCAAAATCGTTATACGGTTCGTC 58.742 43.478 0.00 0.00 45.17 4.20
472 473 3.241741 CGCAAAATCGTTATACGGTTCGT 60.242 43.478 0.00 0.00 45.17 3.85
473 474 3.266067 CGCAAAATCGTTATACGGTTCG 58.734 45.455 0.00 0.00 45.17 3.95
474 475 3.544637 CCCGCAAAATCGTTATACGGTTC 60.545 47.826 0.00 0.00 45.17 3.62
476 477 1.935199 CCCGCAAAATCGTTATACGGT 59.065 47.619 0.00 0.00 42.81 4.83
477 478 2.203401 TCCCGCAAAATCGTTATACGG 58.797 47.619 0.00 0.00 42.81 4.02
478 479 3.363575 CCATCCCGCAAAATCGTTATACG 60.364 47.826 0.00 0.00 44.19 3.06
479 480 3.810941 TCCATCCCGCAAAATCGTTATAC 59.189 43.478 0.00 0.00 0.00 1.47
480 481 4.062293 CTCCATCCCGCAAAATCGTTATA 58.938 43.478 0.00 0.00 0.00 0.98
481 482 2.878406 CTCCATCCCGCAAAATCGTTAT 59.122 45.455 0.00 0.00 0.00 1.89
482 483 2.285083 CTCCATCCCGCAAAATCGTTA 58.715 47.619 0.00 0.00 0.00 3.18
483 484 1.094785 CTCCATCCCGCAAAATCGTT 58.905 50.000 0.00 0.00 0.00 3.85
484 485 0.035439 ACTCCATCCCGCAAAATCGT 60.035 50.000 0.00 0.00 0.00 3.73
485 486 1.094785 AACTCCATCCCGCAAAATCG 58.905 50.000 0.00 0.00 0.00 3.34
486 487 4.137543 AGATAACTCCATCCCGCAAAATC 58.862 43.478 0.00 0.00 0.00 2.17
487 488 4.137543 GAGATAACTCCATCCCGCAAAAT 58.862 43.478 0.00 0.00 37.19 1.82
488 489 3.054728 TGAGATAACTCCATCCCGCAAAA 60.055 43.478 0.00 0.00 41.99 2.44
489 490 2.503765 TGAGATAACTCCATCCCGCAAA 59.496 45.455 0.00 0.00 41.99 3.68
490 491 2.115427 TGAGATAACTCCATCCCGCAA 58.885 47.619 0.00 0.00 41.99 4.85
491 492 1.788229 TGAGATAACTCCATCCCGCA 58.212 50.000 0.00 0.00 41.99 5.69
492 493 2.354203 GGATGAGATAACTCCATCCCGC 60.354 54.545 14.91 0.00 40.58 6.13
493 494 2.899900 TGGATGAGATAACTCCATCCCG 59.100 50.000 19.37 0.00 42.78 5.14
494 495 4.982241 TTGGATGAGATAACTCCATCCC 57.018 45.455 19.37 8.52 42.78 3.85
495 496 5.709164 CCAATTGGATGAGATAACTCCATCC 59.291 44.000 20.50 17.19 43.19 3.51
496 497 6.302269 ACCAATTGGATGAGATAACTCCATC 58.698 40.000 31.22 0.00 38.79 3.51
497 498 6.271585 ACCAATTGGATGAGATAACTCCAT 57.728 37.500 31.22 0.00 38.79 3.41
498 499 5.715439 ACCAATTGGATGAGATAACTCCA 57.285 39.130 31.22 0.00 39.30 3.86
499 500 8.697507 ATTAACCAATTGGATGAGATAACTCC 57.302 34.615 31.22 0.00 39.30 3.85
500 501 9.342308 TGATTAACCAATTGGATGAGATAACTC 57.658 33.333 31.22 9.63 39.91 3.01
501 502 9.125026 GTGATTAACCAATTGGATGAGATAACT 57.875 33.333 31.22 0.85 38.94 2.24
502 503 9.125026 AGTGATTAACCAATTGGATGAGATAAC 57.875 33.333 31.22 16.30 38.94 1.89
503 504 9.699410 AAGTGATTAACCAATTGGATGAGATAA 57.301 29.630 31.22 17.27 38.94 1.75
504 505 9.123902 CAAGTGATTAACCAATTGGATGAGATA 57.876 33.333 31.22 10.38 38.15 1.98
505 506 7.835682 TCAAGTGATTAACCAATTGGATGAGAT 59.164 33.333 31.22 14.32 41.02 2.75
506 507 7.174413 TCAAGTGATTAACCAATTGGATGAGA 58.826 34.615 31.22 10.23 41.02 3.27
507 508 7.395190 TCAAGTGATTAACCAATTGGATGAG 57.605 36.000 31.22 4.18 41.02 2.90
508 509 7.669304 TCTTCAAGTGATTAACCAATTGGATGA 59.331 33.333 31.22 16.64 41.02 2.92
509 510 7.829725 TCTTCAAGTGATTAACCAATTGGATG 58.170 34.615 31.22 13.51 41.02 3.51
510 511 8.599624 ATCTTCAAGTGATTAACCAATTGGAT 57.400 30.769 31.22 21.77 41.02 3.41
511 512 9.527157 TTATCTTCAAGTGATTAACCAATTGGA 57.473 29.630 31.22 9.31 41.02 3.53
516 517 9.793259 ACTCTTTATCTTCAAGTGATTAACCAA 57.207 29.630 0.00 0.00 0.00 3.67
522 523 7.995488 CCCCATACTCTTTATCTTCAAGTGATT 59.005 37.037 0.00 0.00 0.00 2.57
523 524 7.348274 TCCCCATACTCTTTATCTTCAAGTGAT 59.652 37.037 0.00 0.00 0.00 3.06
524 525 6.672218 TCCCCATACTCTTTATCTTCAAGTGA 59.328 38.462 0.00 0.00 0.00 3.41
525 526 6.763610 GTCCCCATACTCTTTATCTTCAAGTG 59.236 42.308 0.00 0.00 0.00 3.16
526 527 6.126739 GGTCCCCATACTCTTTATCTTCAAGT 60.127 42.308 0.00 0.00 0.00 3.16
527 528 6.292150 GGTCCCCATACTCTTTATCTTCAAG 58.708 44.000 0.00 0.00 0.00 3.02
528 529 5.132144 GGGTCCCCATACTCTTTATCTTCAA 59.868 44.000 0.00 0.00 35.81 2.69
529 530 4.658901 GGGTCCCCATACTCTTTATCTTCA 59.341 45.833 0.00 0.00 35.81 3.02
530 531 4.262506 CGGGTCCCCATACTCTTTATCTTC 60.263 50.000 1.00 0.00 35.37 2.87
531 532 3.646637 CGGGTCCCCATACTCTTTATCTT 59.353 47.826 1.00 0.00 35.37 2.40
532 533 3.116862 TCGGGTCCCCATACTCTTTATCT 60.117 47.826 1.00 0.00 35.37 1.98
533 534 3.236896 TCGGGTCCCCATACTCTTTATC 58.763 50.000 1.00 0.00 35.37 1.75
534 535 3.240302 CTCGGGTCCCCATACTCTTTAT 58.760 50.000 1.00 0.00 35.37 1.40
535 536 2.023695 ACTCGGGTCCCCATACTCTTTA 60.024 50.000 1.00 0.00 35.37 1.85
536 537 1.273666 ACTCGGGTCCCCATACTCTTT 60.274 52.381 1.00 0.00 35.37 2.52
537 538 0.338814 ACTCGGGTCCCCATACTCTT 59.661 55.000 1.00 0.00 35.37 2.85
538 539 0.106116 GACTCGGGTCCCCATACTCT 60.106 60.000 3.28 0.00 36.53 3.24
539 540 0.106116 AGACTCGGGTCCCCATACTC 60.106 60.000 12.98 0.00 43.05 2.59
540 541 0.397254 CAGACTCGGGTCCCCATACT 60.397 60.000 12.98 0.00 43.05 2.12
541 542 1.400530 CCAGACTCGGGTCCCCATAC 61.401 65.000 12.98 0.00 43.05 2.39
542 543 1.075525 CCAGACTCGGGTCCCCATA 60.076 63.158 12.98 0.00 43.05 2.74
543 544 2.365635 CCAGACTCGGGTCCCCAT 60.366 66.667 12.98 0.00 43.05 4.00
544 545 4.715130 CCCAGACTCGGGTCCCCA 62.715 72.222 12.98 0.00 43.05 4.96
670 672 6.413892 TCACATTTGACATAGTTGGCATCTA 58.586 36.000 7.69 7.69 41.66 1.98
820 822 2.617274 GCCAGGCAAGGACAACGAC 61.617 63.158 6.55 0.00 0.00 4.34
974 980 1.300620 CAACCGAGCAGGACAACGA 60.301 57.895 5.19 0.00 45.00 3.85
1517 1584 7.061905 ACTCGATTTTGTTACTTGTCAGTATCG 59.938 37.037 0.00 0.00 35.32 2.92
1521 1588 6.920569 AACTCGATTTTGTTACTTGTCAGT 57.079 33.333 0.00 0.00 36.99 3.41
1534 1601 6.325919 TGCCAGTAATCAAAACTCGATTTT 57.674 33.333 0.00 0.00 41.38 1.82
1535 1602 5.957842 TGCCAGTAATCAAAACTCGATTT 57.042 34.783 0.00 0.00 34.89 2.17
1536 1603 5.677091 GCATGCCAGTAATCAAAACTCGATT 60.677 40.000 6.36 0.00 36.97 3.34
1537 1604 4.201950 GCATGCCAGTAATCAAAACTCGAT 60.202 41.667 6.36 0.00 0.00 3.59
1539 1606 3.127548 AGCATGCCAGTAATCAAAACTCG 59.872 43.478 15.66 0.00 0.00 4.18
1540 1607 4.156556 TGAGCATGCCAGTAATCAAAACTC 59.843 41.667 15.66 0.09 0.00 3.01
1541 1608 4.081406 TGAGCATGCCAGTAATCAAAACT 58.919 39.130 15.66 0.00 0.00 2.66
1543 1610 5.651576 TGTATGAGCATGCCAGTAATCAAAA 59.348 36.000 15.66 0.67 0.00 2.44
1544 1611 5.192176 TGTATGAGCATGCCAGTAATCAAA 58.808 37.500 15.66 0.00 0.00 2.69
1545 1612 4.779696 TGTATGAGCATGCCAGTAATCAA 58.220 39.130 15.66 0.00 0.00 2.57
1547 1615 6.169094 AGTATGTATGAGCATGCCAGTAATC 58.831 40.000 15.66 4.60 32.95 1.75
1591 1659 7.782049 TGAAGGGTGACTTAGTATGTAATGAG 58.218 38.462 0.00 0.00 40.21 2.90
1681 1755 5.221130 GTGGGCTATAGTCTGTAATTCGTC 58.779 45.833 3.98 0.00 0.00 4.20
1682 1756 4.647853 TGTGGGCTATAGTCTGTAATTCGT 59.352 41.667 3.98 0.00 0.00 3.85
1726 1802 5.233050 CCAACAAGCTCGACATGTATCTAAG 59.767 44.000 0.00 0.00 28.03 2.18
1776 1868 8.768501 AGAGGTTAGTTCCAAAAGAGAAATTT 57.231 30.769 0.00 0.00 0.00 1.82
1796 1974 4.104738 TCCAGAGAAATCCACAAAAGAGGT 59.895 41.667 0.00 0.00 0.00 3.85
1800 1978 6.658391 AGAAGATCCAGAGAAATCCACAAAAG 59.342 38.462 0.00 0.00 0.00 2.27
1841 2031 7.602265 TGCTTCCATAAAATTTAACTCTTTGCC 59.398 33.333 0.00 0.00 0.00 4.52
1851 2041 5.247110 TGGGCAAGTGCTTCCATAAAATTTA 59.753 36.000 2.85 0.00 41.70 1.40
1855 2045 2.562298 CTGGGCAAGTGCTTCCATAAAA 59.438 45.455 2.85 0.00 41.70 1.52
1862 2052 1.973812 GGTCCTGGGCAAGTGCTTC 60.974 63.158 0.00 0.00 41.70 3.86
1893 2083 3.927142 CCTGAAAGACGTGGATGAGTTAC 59.073 47.826 0.00 0.00 34.07 2.50
2063 2253 5.337652 CGATTTTACCTTCCTCAGAGGAACT 60.338 44.000 25.94 16.50 46.88 3.01
2066 2256 4.094476 ACGATTTTACCTTCCTCAGAGGA 58.906 43.478 15.98 15.98 44.10 3.71
2120 2313 5.268118 TGGTTAAAATGTTGTGCACATGA 57.732 34.783 22.39 10.70 46.23 3.07
2128 2321 7.984617 ACAGTGCTAATTTGGTTAAAATGTTGT 59.015 29.630 0.00 0.00 38.52 3.32
2130 2323 8.956533 AACAGTGCTAATTTGGTTAAAATGTT 57.043 26.923 0.00 0.00 38.52 2.71
2206 2431 2.841442 AGCCGTTTATGAGATAGGCC 57.159 50.000 0.00 0.00 45.16 5.19
2294 2519 3.726235 CGTAAGCTCATCGTGTACAGATG 59.274 47.826 20.42 20.42 44.95 2.90
2462 2687 2.763448 ACCTGTTTTGGTAAGCTTGCAA 59.237 40.909 16.70 1.45 38.79 4.08
2476 2701 4.906060 AGGGTCTACAGTCTTTACCTGTTT 59.094 41.667 0.00 0.00 42.83 2.83
2534 2759 2.890808 ATGGACTAACGACGCATCAT 57.109 45.000 0.00 0.00 0.00 2.45
2544 2769 7.743400 GCAACGAGTTTAAGTTAATGGACTAAC 59.257 37.037 0.00 0.00 32.84 2.34
2613 2838 9.107367 CTTTAACTGAAGAAATAAACGAGCTTG 57.893 33.333 0.00 0.00 0.00 4.01
2628 2857 4.561735 TCGGTTTTGGCTTTAACTGAAG 57.438 40.909 0.00 0.00 36.87 3.02
2638 2867 1.351017 TCTTCTGGATCGGTTTTGGCT 59.649 47.619 0.00 0.00 0.00 4.75
2694 2924 2.867855 AAGCGCGAGTGGTCCAAGA 61.868 57.895 12.10 0.00 0.00 3.02
2699 2929 4.681978 ACCCAAGCGCGAGTGGTC 62.682 66.667 22.33 0.00 32.60 4.02
2701 2931 4.680237 TCACCCAAGCGCGAGTGG 62.680 66.667 12.10 16.37 34.44 4.00
2702 2932 2.664851 TTCACCCAAGCGCGAGTG 60.665 61.111 12.10 6.35 0.00 3.51
2703 2933 1.812686 TAGTTCACCCAAGCGCGAGT 61.813 55.000 12.10 0.00 0.00 4.18
2704 2934 0.460284 ATAGTTCACCCAAGCGCGAG 60.460 55.000 12.10 0.00 0.00 5.03
2705 2935 0.818938 TATAGTTCACCCAAGCGCGA 59.181 50.000 12.10 0.00 0.00 5.87
2706 2936 0.928229 GTATAGTTCACCCAAGCGCG 59.072 55.000 0.00 0.00 0.00 6.86
2707 2937 2.018542 TGTATAGTTCACCCAAGCGC 57.981 50.000 0.00 0.00 0.00 5.92
2708 2938 2.872245 CCATGTATAGTTCACCCAAGCG 59.128 50.000 0.00 0.00 0.00 4.68
2709 2939 4.130118 CTCCATGTATAGTTCACCCAAGC 58.870 47.826 0.00 0.00 0.00 4.01
2710 2940 4.708177 CCTCCATGTATAGTTCACCCAAG 58.292 47.826 0.00 0.00 0.00 3.61
2720 2950 5.429957 GCAAAAAGAGCCTCCATGTATAG 57.570 43.478 0.00 0.00 0.00 1.31
2741 2973 2.704725 TCAATTTCGACTGCTTTGGC 57.295 45.000 0.00 0.00 39.26 4.52
2743 2975 3.976942 CAGGTTCAATTTCGACTGCTTTG 59.023 43.478 0.00 0.00 0.00 2.77
2751 2983 0.404040 AGGCCCAGGTTCAATTTCGA 59.596 50.000 0.00 0.00 0.00 3.71
2757 2989 1.440618 TCTGTAAGGCCCAGGTTCAA 58.559 50.000 0.00 0.00 0.00 2.69
2781 3013 1.009183 CAGGGGTTAGAGGGTTCCCTA 59.991 57.143 10.70 0.00 45.52 3.53
2787 3019 1.596496 CATTCCAGGGGTTAGAGGGT 58.404 55.000 0.00 0.00 0.00 4.34
2788 3020 0.183731 GCATTCCAGGGGTTAGAGGG 59.816 60.000 0.00 0.00 0.00 4.30
2794 3026 1.269012 CAATGTGCATTCCAGGGGTT 58.731 50.000 0.00 0.00 0.00 4.11
2798 3030 3.731089 ACAAAACAATGTGCATTCCAGG 58.269 40.909 0.00 0.00 30.82 4.45
2801 3033 7.418840 TCATAAACAAAACAATGTGCATTCC 57.581 32.000 0.00 0.00 32.81 3.01
2904 3136 5.352016 CCGGGTTCGAGAAAACACAAATATA 59.648 40.000 0.00 0.00 39.00 0.86
2911 3149 1.572941 GCCGGGTTCGAGAAAACAC 59.427 57.895 2.18 0.00 39.00 3.32
2915 3153 1.593265 GTAGGCCGGGTTCGAGAAA 59.407 57.895 2.18 0.00 39.00 2.52
2926 3164 5.287226 AGTCATATTACTTTTCGTAGGCCG 58.713 41.667 0.00 0.00 38.13 6.13
2935 3175 5.123344 GTGGTCGGCAAGTCATATTACTTTT 59.877 40.000 0.00 0.00 37.61 2.27
3004 3246 7.727181 AGCTAACACGAACCTTGATTCTATAT 58.273 34.615 0.00 0.00 0.00 0.86
3015 3257 4.451096 CACACAATTAGCTAACACGAACCT 59.549 41.667 8.70 0.00 0.00 3.50
3018 3260 3.810386 TGCACACAATTAGCTAACACGAA 59.190 39.130 8.70 0.00 0.00 3.85
3042 3284 4.420168 ACACGTCAAATTGTCAAAACAGG 58.580 39.130 0.00 0.00 36.57 4.00
3169 3411 2.417933 GTGCTCTGCAGATTTGAACGAT 59.582 45.455 18.63 0.00 40.08 3.73
3296 3540 2.501723 GCCTCCAAGGAGAACAGATACA 59.498 50.000 17.57 0.00 44.53 2.29
3475 3725 7.148086 GCTATGAACACCTGTAATTCCAATTGA 60.148 37.037 7.12 0.00 0.00 2.57
3483 3733 5.163519 GCAATGGCTATGAACACCTGTAATT 60.164 40.000 0.00 0.00 36.96 1.40
4087 4337 2.629617 CCAGAAAACACAGGGAGCAATT 59.370 45.455 0.00 0.00 0.00 2.32
4149 4399 2.086869 CATTTGGTGCAGGGTACTCAG 58.913 52.381 0.00 0.00 0.00 3.35
4177 4427 1.401761 ATATTGCCATGCTGCGGAAA 58.598 45.000 0.00 0.00 0.00 3.13
4196 4446 2.176045 TGAGAAGCCATCGACACCTAA 58.824 47.619 0.00 0.00 0.00 2.69
4484 4734 0.321122 GACTGAGGCAGAACCCACAG 60.321 60.000 0.82 4.45 44.22 3.66
4664 4914 8.181904 ACAGGACAAATGTAAATTTCACAGAT 57.818 30.769 0.00 0.00 0.00 2.90
4690 4945 4.379813 GCGCCCATATGGATGTTCTTAATG 60.380 45.833 24.00 2.65 37.39 1.90
4797 5052 2.289133 ACACACACACACACACACACTA 60.289 45.455 0.00 0.00 0.00 2.74
4828 5085 5.064071 CACACTATTTACACACACACACACA 59.936 40.000 0.00 0.00 0.00 3.72
4829 5086 5.498159 CACACTATTTACACACACACACAC 58.502 41.667 0.00 0.00 0.00 3.82
4839 5096 3.939066 ACTCCTGCCACACTATTTACAC 58.061 45.455 0.00 0.00 0.00 2.90
4841 5098 3.127030 GCAACTCCTGCCACACTATTTAC 59.873 47.826 0.00 0.00 46.13 2.01
4965 5227 7.491372 TGTTTATTACTACTGGCAATCTTCTCG 59.509 37.037 0.00 0.00 0.00 4.04
5040 5305 6.293081 GGCACGTCTGAGTATATTTCGTACTA 60.293 42.308 0.00 0.00 32.77 1.82
5041 5306 5.505324 GGCACGTCTGAGTATATTTCGTACT 60.505 44.000 0.00 0.00 35.20 2.73
5065 5332 1.754226 GAGCTCCTGTTCCTGAGGTAG 59.246 57.143 0.87 0.00 39.29 3.18
5083 5350 1.699656 CCGAGCTGCAATGGAACGAG 61.700 60.000 1.02 0.00 0.00 4.18
5260 5534 1.749033 CCCGGAATACAGGAGAGGC 59.251 63.158 0.73 0.00 33.26 4.70
5441 5715 2.283298 GTGGTGATCAGATCGTGCAAT 58.717 47.619 5.91 0.00 0.00 3.56
5442 5716 1.675714 GGTGGTGATCAGATCGTGCAA 60.676 52.381 5.91 0.00 0.00 4.08
5565 5839 3.069318 GCCCGGACTCGTCTCCTT 61.069 66.667 0.73 0.00 33.95 3.36
5568 5842 2.750637 TGAGCCCGGACTCGTCTC 60.751 66.667 13.50 5.29 39.68 3.36
5569 5843 3.063084 GTGAGCCCGGACTCGTCT 61.063 66.667 13.50 0.00 39.68 4.18
5572 5846 2.202797 CATGTGAGCCCGGACTCG 60.203 66.667 13.50 0.00 39.68 4.18
5578 5852 1.359848 GTAGTTGTCATGTGAGCCCG 58.640 55.000 0.00 0.00 0.00 6.13
5579 5853 1.739067 GGTAGTTGTCATGTGAGCCC 58.261 55.000 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.