Multiple sequence alignment - TraesCS2B01G394200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G394200 chr2B 100.000 5331 0 0 1 5331 559176073 559181403 0.000000e+00 9845.0
1 TraesCS2B01G394200 chr2B 91.738 351 22 5 4921 5264 59067285 59066935 1.040000e-131 481.0
2 TraesCS2B01G394200 chr2B 91.471 340 23 6 4928 5263 671162791 671162454 3.760000e-126 462.0
3 TraesCS2B01G394200 chr2B 89.076 357 25 9 4921 5263 2634398 2634042 1.060000e-116 431.0
4 TraesCS2B01G394200 chr2D 94.753 4250 125 29 708 4911 477237584 477241781 0.000000e+00 6523.0
5 TraesCS2B01G394200 chr2D 91.429 105 5 4 3432 3533 15192875 15192978 2.000000e-29 141.0
6 TraesCS2B01G394200 chr2D 100.000 69 0 0 5263 5331 477241772 477241840 1.560000e-25 128.0
7 TraesCS2B01G394200 chr2D 96.875 32 1 0 2033 2064 349001127 349001158 3.000000e-03 54.7
8 TraesCS2B01G394200 chr2A 93.711 2719 96 31 766 3440 619613097 619615784 0.000000e+00 4004.0
9 TraesCS2B01G394200 chr2A 93.744 1039 48 8 3521 4554 619615783 619616809 0.000000e+00 1543.0
10 TraesCS2B01G394200 chr2A 80.908 639 82 22 1 623 662258262 662257648 8.080000e-128 468.0
11 TraesCS2B01G394200 chr2A 83.953 430 56 10 278 697 73918381 73917955 2.990000e-107 399.0
12 TraesCS2B01G394200 chr2A 90.857 175 12 2 728 902 619570022 619570192 1.150000e-56 231.0
13 TraesCS2B01G394200 chr2A 91.667 132 11 0 4656 4787 619617144 619617275 3.280000e-42 183.0
14 TraesCS2B01G394200 chr2A 83.221 149 14 4 561 698 229983998 229983850 5.610000e-25 126.0
15 TraesCS2B01G394200 chr6A 82.511 709 88 21 3 697 347598651 347599337 1.650000e-164 590.0
16 TraesCS2B01G394200 chr6A 83.759 431 57 11 277 697 181277988 181278415 3.870000e-106 396.0
17 TraesCS2B01G394200 chr6A 86.420 243 28 5 3 241 400388569 400388810 1.470000e-65 261.0
18 TraesCS2B01G394200 chr6A 95.699 93 2 2 3438 3529 557970133 557970042 1.200000e-31 148.0
19 TraesCS2B01G394200 chr1A 82.353 714 90 20 3 702 135817607 135818298 5.950000e-164 588.0
20 TraesCS2B01G394200 chr1A 97.753 89 0 2 3435 3522 590819667 590819580 9.250000e-33 152.0
21 TraesCS2B01G394200 chr3A 84.420 629 62 22 3 623 164401565 164400965 2.140000e-163 586.0
22 TraesCS2B01G394200 chr3A 82.022 712 87 23 3 699 204880169 204880854 7.750000e-158 568.0
23 TraesCS2B01G394200 chr3A 84.223 431 55 10 277 697 343312699 343313126 1.790000e-109 407.0
24 TraesCS2B01G394200 chr5A 82.403 699 86 23 3 685 602792647 602793324 4.630000e-160 575.0
25 TraesCS2B01G394200 chr5A 84.106 453 54 15 277 715 659432189 659431741 6.380000e-114 422.0
26 TraesCS2B01G394200 chr5A 91.429 105 5 4 3429 3530 328804707 328804810 2.000000e-29 141.0
27 TraesCS2B01G394200 chr5D 83.840 625 76 11 3 623 204511085 204511688 5.990000e-159 571.0
28 TraesCS2B01G394200 chr5D 83.067 626 78 19 3 623 535807089 535807691 1.310000e-150 544.0
29 TraesCS2B01G394200 chr5D 100.000 31 0 0 2032 2062 138465398 138465368 2.070000e-04 58.4
30 TraesCS2B01G394200 chr5D 100.000 31 0 0 2032 2062 498638217 498638247 2.070000e-04 58.4
31 TraesCS2B01G394200 chr5D 100.000 29 0 0 2033 2061 387704736 387704764 3.000000e-03 54.7
32 TraesCS2B01G394200 chrUn 81.629 626 84 19 3 623 46265497 46266096 1.730000e-134 490.0
33 TraesCS2B01G394200 chr3B 92.035 339 21 6 4933 5266 596302673 596302336 6.250000e-129 472.0
34 TraesCS2B01G394200 chr3B 90.407 344 25 6 4928 5263 134220464 134220807 3.790000e-121 446.0
35 TraesCS2B01G394200 chr3B 87.654 243 22 8 3 241 814015651 814015889 5.260000e-70 276.0
36 TraesCS2B01G394200 chr7B 91.520 342 24 5 4928 5265 712843468 712843128 2.910000e-127 466.0
37 TraesCS2B01G394200 chr6B 90.643 342 27 4 4928 5264 495468234 495467893 2.930000e-122 449.0
38 TraesCS2B01G394200 chr6B 89.504 343 29 6 4927 5263 125049913 125050254 1.370000e-115 427.0
39 TraesCS2B01G394200 chr6B 83.184 446 63 7 277 713 79642867 79642425 1.080000e-106 398.0
40 TraesCS2B01G394200 chr1B 90.087 343 19 10 4928 5263 689826116 689825782 1.060000e-116 431.0
41 TraesCS2B01G394200 chr1B 95.745 94 2 2 3435 3526 456268080 456268173 3.330000e-32 150.0
42 TraesCS2B01G394200 chr1B 95.775 71 3 0 627 697 52700969 52700899 1.210000e-21 115.0
43 TraesCS2B01G394200 chr1B 97.059 34 1 0 2033 2066 33790595 33790562 2.070000e-04 58.4
44 TraesCS2B01G394200 chr4B 83.953 430 58 9 277 697 348414014 348413587 8.320000e-108 401.0
45 TraesCS2B01G394200 chr4B 83.495 412 42 10 3 410 639560741 639560352 1.410000e-95 361.0
46 TraesCS2B01G394200 chr1D 85.345 348 49 2 277 623 36324716 36324370 5.080000e-95 359.0
47 TraesCS2B01G394200 chr4A 82.410 307 41 5 403 697 351534420 351534725 6.850000e-64 255.0
48 TraesCS2B01G394200 chr4A 96.970 33 1 0 2033 2065 574527158 574527126 7.460000e-04 56.5
49 TraesCS2B01G394200 chr7A 81.818 308 45 4 403 699 103133352 103133659 1.150000e-61 248.0
50 TraesCS2B01G394200 chr7D 96.739 92 2 1 3438 3528 519264631 519264540 9.250000e-33 152.0
51 TraesCS2B01G394200 chr7D 93.878 98 5 1 3438 3534 426558984 426558887 4.300000e-31 147.0
52 TraesCS2B01G394200 chr6D 96.739 92 2 1 3439 3529 59623259 59623168 9.250000e-33 152.0
53 TraesCS2B01G394200 chr3D 97.727 88 1 1 3438 3524 54370412 54370499 3.330000e-32 150.0
54 TraesCS2B01G394200 chr5B 96.774 62 2 0 624 685 21666288 21666349 2.630000e-18 104.0
55 TraesCS2B01G394200 chr5B 90.667 75 7 0 639 713 107947676 107947602 3.400000e-17 100.0
56 TraesCS2B01G394200 chr5B 91.892 37 3 0 2032 2068 691153455 691153419 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G394200 chr2B 559176073 559181403 5330 False 9845.0 9845 100.000000 1 5331 1 chr2B.!!$F1 5330
1 TraesCS2B01G394200 chr2D 477237584 477241840 4256 False 3325.5 6523 97.376500 708 5331 2 chr2D.!!$F3 4623
2 TraesCS2B01G394200 chr2A 619613097 619617275 4178 False 1910.0 4004 93.040667 766 4787 3 chr2A.!!$F2 4021
3 TraesCS2B01G394200 chr2A 662257648 662258262 614 True 468.0 468 80.908000 1 623 1 chr2A.!!$R3 622
4 TraesCS2B01G394200 chr6A 347598651 347599337 686 False 590.0 590 82.511000 3 697 1 chr6A.!!$F2 694
5 TraesCS2B01G394200 chr1A 135817607 135818298 691 False 588.0 588 82.353000 3 702 1 chr1A.!!$F1 699
6 TraesCS2B01G394200 chr3A 164400965 164401565 600 True 586.0 586 84.420000 3 623 1 chr3A.!!$R1 620
7 TraesCS2B01G394200 chr3A 204880169 204880854 685 False 568.0 568 82.022000 3 699 1 chr3A.!!$F1 696
8 TraesCS2B01G394200 chr5A 602792647 602793324 677 False 575.0 575 82.403000 3 685 1 chr5A.!!$F2 682
9 TraesCS2B01G394200 chr5D 204511085 204511688 603 False 571.0 571 83.840000 3 623 1 chr5D.!!$F1 620
10 TraesCS2B01G394200 chr5D 535807089 535807691 602 False 544.0 544 83.067000 3 623 1 chr5D.!!$F4 620
11 TraesCS2B01G394200 chrUn 46265497 46266096 599 False 490.0 490 81.629000 3 623 1 chrUn.!!$F1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 130 0.393820 TGTCCTCGCCCGTTTTAGTT 59.606 50.0 0.00 0.0 0.0 2.24 F
1738 1792 2.872245 CGTGGTTATGCATGGGAACTAG 59.128 50.0 10.16 0.0 0.0 2.57 F
3448 3540 0.543277 CTTGCATGCTACTCCCTCCA 59.457 55.0 20.33 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 1798 1.393539 ACATAAGTGATGAACGCGCAC 59.606 47.619 5.73 5.76 39.06 5.34 R
3669 3761 3.483808 TGTGAGGCAAACACATGTAGA 57.516 42.857 0.00 0.00 42.20 2.59 R
4610 4887 0.028902 GCTTGAACTGCGACCGTTTT 59.971 50.000 0.00 0.00 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 45 9.311916 GATGCAATTTAGCCATGTTACATTTTA 57.688 29.630 0.00 0.00 0.00 1.52
60 63 5.606348 TTTTATTTGCCGGGCATAATCTT 57.394 34.783 24.49 5.53 38.76 2.40
66 69 3.826524 TGCCGGGCATAATCTTTCATTA 58.173 40.909 19.77 0.00 31.71 1.90
72 75 7.086376 CCGGGCATAATCTTTCATTAATTCTG 58.914 38.462 0.00 0.00 0.00 3.02
111 117 5.368145 TCCTTTAATTCCATGATGTCCTCG 58.632 41.667 0.00 0.00 0.00 4.63
123 130 0.393820 TGTCCTCGCCCGTTTTAGTT 59.606 50.000 0.00 0.00 0.00 2.24
145 152 7.805163 AGTTGGAAATCAAATCCTTCCTTTTT 58.195 30.769 2.08 0.00 39.54 1.94
241 254 8.332487 AGTCCTTTCTTTAATTAGCCTCATCTT 58.668 33.333 0.00 0.00 0.00 2.40
242 255 8.616942 GTCCTTTCTTTAATTAGCCTCATCTTC 58.383 37.037 0.00 0.00 0.00 2.87
243 256 7.775561 TCCTTTCTTTAATTAGCCTCATCTTCC 59.224 37.037 0.00 0.00 0.00 3.46
244 257 7.777440 CCTTTCTTTAATTAGCCTCATCTTCCT 59.223 37.037 0.00 0.00 0.00 3.36
245 258 9.183368 CTTTCTTTAATTAGCCTCATCTTCCTT 57.817 33.333 0.00 0.00 0.00 3.36
246 259 9.533831 TTTCTTTAATTAGCCTCATCTTCCTTT 57.466 29.630 0.00 0.00 0.00 3.11
253 266 8.628630 ATTAGCCTCATCTTCCTTTAATTAGC 57.371 34.615 0.00 0.00 0.00 3.09
254 267 5.380900 AGCCTCATCTTCCTTTAATTAGCC 58.619 41.667 0.00 0.00 0.00 3.93
255 268 5.133491 AGCCTCATCTTCCTTTAATTAGCCT 59.867 40.000 0.00 0.00 0.00 4.58
256 269 5.471797 GCCTCATCTTCCTTTAATTAGCCTC 59.528 44.000 0.00 0.00 0.00 4.70
257 270 6.595682 CCTCATCTTCCTTTAATTAGCCTCA 58.404 40.000 0.00 0.00 0.00 3.86
258 271 7.230027 CCTCATCTTCCTTTAATTAGCCTCAT 58.770 38.462 0.00 0.00 0.00 2.90
259 272 7.390162 CCTCATCTTCCTTTAATTAGCCTCATC 59.610 40.741 0.00 0.00 0.00 2.92
260 273 8.038862 TCATCTTCCTTTAATTAGCCTCATCT 57.961 34.615 0.00 0.00 0.00 2.90
261 274 9.159254 TCATCTTCCTTTAATTAGCCTCATCTA 57.841 33.333 0.00 0.00 0.00 1.98
262 275 9.213799 CATCTTCCTTTAATTAGCCTCATCTAC 57.786 37.037 0.00 0.00 0.00 2.59
326 340 6.756299 TTATTCCACCGGTTTACCAATAAC 57.244 37.500 2.97 0.00 35.14 1.89
332 346 5.242171 CCACCGGTTTACCAATAACTCTTTT 59.758 40.000 2.97 0.00 35.14 2.27
416 430 7.808010 AGCTCATTTGCTTAATTAGCTTGCCT 61.808 38.462 12.24 0.00 46.61 4.75
429 443 3.973425 AGCTTGCCTTAAACATGAGGAT 58.027 40.909 0.00 0.00 34.91 3.24
504 518 3.562557 AGGTTGTTGGTTGTTACATCGAC 59.437 43.478 0.00 0.00 0.00 4.20
515 539 6.588756 GGTTGTTACATCGACAATCTAGACAA 59.411 38.462 0.00 0.00 39.03 3.18
610 634 6.256053 ACCCATAAAAGGCCCATCAATATAG 58.744 40.000 0.00 0.00 0.00 1.31
620 644 4.938226 GCCCATCAATATAGAAGTACCTGC 59.062 45.833 0.00 0.00 0.00 4.85
805 841 7.225931 GTGTGGCATAAAACTCGGATTAATCTA 59.774 37.037 14.95 3.54 0.00 1.98
830 866 5.623673 CCGCGTGCCATAAAATAAAATCTAC 59.376 40.000 4.92 0.00 0.00 2.59
831 867 6.427150 CGCGTGCCATAAAATAAAATCTACT 58.573 36.000 0.00 0.00 0.00 2.57
832 868 6.573725 CGCGTGCCATAAAATAAAATCTACTC 59.426 38.462 0.00 0.00 0.00 2.59
833 869 6.856426 GCGTGCCATAAAATAAAATCTACTCC 59.144 38.462 0.00 0.00 0.00 3.85
866 902 6.292865 CGCAAGAACATCATAATATCCGTGTT 60.293 38.462 0.00 0.00 43.02 3.32
904 940 3.367025 AGCTATTACGTGCGTCAAAAGAC 59.633 43.478 0.00 0.00 0.00 3.01
1668 1722 6.249951 TGGGTTAAAATACATGTAGCTTGGT 58.750 36.000 11.91 0.00 0.00 3.67
1738 1792 2.872245 CGTGGTTATGCATGGGAACTAG 59.128 50.000 10.16 0.00 0.00 2.57
1744 1798 5.867716 GGTTATGCATGGGAACTAGTATACG 59.132 44.000 10.16 0.00 0.00 3.06
1749 1803 1.066002 TGGGAACTAGTATACGTGCGC 59.934 52.381 0.00 0.00 0.00 6.09
1763 1817 1.589731 CGTGCGCGTTCATCACTTATG 60.590 52.381 12.43 0.00 36.88 1.90
2029 2095 6.742559 TTTGTAAAGTACTCCCTCTGTTCT 57.257 37.500 0.00 0.00 0.00 3.01
2030 2096 6.742559 TTGTAAAGTACTCCCTCTGTTCTT 57.257 37.500 0.00 0.00 0.00 2.52
2050 2116 5.291178 TCTTCGACACTTATTTTGGAACGA 58.709 37.500 0.00 0.00 0.00 3.85
2063 2129 5.687166 TTTGGAACGAAGGGAGTATATGT 57.313 39.130 0.00 0.00 0.00 2.29
2156 2230 6.071560 TGCTCGAAGTGAAGTATTTTCCTCTA 60.072 38.462 0.00 0.00 0.00 2.43
2184 2258 8.459521 TTGTTGTGTTGTGTTTTCTTTATGAG 57.540 30.769 0.00 0.00 0.00 2.90
2548 2622 4.649674 ACTCTTGACTCAAGTACCTGAACA 59.350 41.667 16.75 0.00 41.66 3.18
3346 3438 3.447229 GGCTTACATTGTTTATGCCACCT 59.553 43.478 10.20 0.00 38.85 4.00
3448 3540 0.543277 CTTGCATGCTACTCCCTCCA 59.457 55.000 20.33 0.00 0.00 3.86
3470 3562 7.458397 TCCATCCCATAATATAAGAGCGTTTT 58.542 34.615 0.00 0.00 0.00 2.43
3471 3563 7.942341 TCCATCCCATAATATAAGAGCGTTTTT 59.058 33.333 0.00 0.00 0.00 1.94
3472 3564 8.023128 CCATCCCATAATATAAGAGCGTTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
3473 3565 8.783093 CATCCCATAATATAAGAGCGTTTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
3474 3566 8.149973 TCCCATAATATAAGAGCGTTTTTGAC 57.850 34.615 0.00 0.00 0.00 3.18
3475 3567 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
3476 3568 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
3477 3569 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
3480 3572 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
3481 3573 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
3516 3608 3.738281 CGCTCTTATATTATGGGCGGAGG 60.738 52.174 6.75 0.00 45.62 4.30
3669 3761 4.773674 TGATCTGCCATTGAAAGGATGTTT 59.226 37.500 0.00 0.00 0.00 2.83
3692 3784 3.374220 ACATGTGTTTGCCTCACAATG 57.626 42.857 0.00 9.95 46.47 2.82
3806 3902 1.490490 TCCACACAAGCACTTCTCCTT 59.510 47.619 0.00 0.00 0.00 3.36
3808 3904 2.564771 CACACAAGCACTTCTCCTTCA 58.435 47.619 0.00 0.00 0.00 3.02
3810 3906 4.318332 CACACAAGCACTTCTCCTTCATA 58.682 43.478 0.00 0.00 0.00 2.15
3811 3907 4.153117 CACACAAGCACTTCTCCTTCATAC 59.847 45.833 0.00 0.00 0.00 2.39
3891 3990 6.216801 TGTTTGTACACTCTGTTACTCTGT 57.783 37.500 0.00 0.00 0.00 3.41
3892 3991 6.636705 TGTTTGTACACTCTGTTACTCTGTT 58.363 36.000 0.00 0.00 0.00 3.16
3893 3992 7.101054 TGTTTGTACACTCTGTTACTCTGTTT 58.899 34.615 0.00 0.00 0.00 2.83
3894 3993 7.604927 TGTTTGTACACTCTGTTACTCTGTTTT 59.395 33.333 0.00 0.00 0.00 2.43
3895 3994 7.766219 TTGTACACTCTGTTACTCTGTTTTC 57.234 36.000 0.00 0.00 0.00 2.29
3896 3995 6.869695 TGTACACTCTGTTACTCTGTTTTCA 58.130 36.000 0.00 0.00 0.00 2.69
3897 3996 6.755141 TGTACACTCTGTTACTCTGTTTTCAC 59.245 38.462 0.00 0.00 0.00 3.18
3926 4025 2.038426 CACCATTCACTGTCCACTGGTA 59.962 50.000 0.00 0.00 35.31 3.25
4003 4102 4.943705 CACTGACTGGTATGGCTGTTAATT 59.056 41.667 0.00 0.00 0.00 1.40
4156 4255 6.663093 TGCAACTATCCATGGTTTTGTTCTAT 59.337 34.615 12.58 0.00 28.36 1.98
4320 4419 1.001293 TGTGAAGATTGAGCAGCTCGT 59.999 47.619 17.81 8.85 32.35 4.18
4336 4435 3.118956 AGCTCGTTACAGATTGAGAAGGG 60.119 47.826 0.00 0.00 0.00 3.95
4378 4477 5.003804 TGAGCATCTTGGTCCTTTTTAGTC 58.996 41.667 4.43 0.00 43.72 2.59
4389 4488 6.014840 TGGTCCTTTTTAGTCTTGACGTAGAT 60.015 38.462 0.00 0.00 0.00 1.98
4406 4505 7.660617 TGACGTAGATATCTAGATTCGTCCTTT 59.339 37.037 30.67 12.43 40.46 3.11
4427 4526 6.256321 CCTTTGTTTGGTTGAAAGATGTCAAG 59.744 38.462 0.00 0.00 38.17 3.02
4443 4542 5.743026 TGTCAAGTATTTTGTTCGCTCAA 57.257 34.783 0.00 0.00 0.00 3.02
4447 4546 4.160736 AGTATTTTGTTCGCTCAAAGGC 57.839 40.909 5.36 0.00 38.32 4.35
4568 4841 3.637229 TCCACATGCTAGAGCTTAGTACC 59.363 47.826 2.72 0.00 42.66 3.34
4571 4844 3.235200 CATGCTAGAGCTTAGTACCCCT 58.765 50.000 2.72 0.00 42.66 4.79
4572 4845 2.946785 TGCTAGAGCTTAGTACCCCTC 58.053 52.381 2.72 0.00 42.66 4.30
4574 4847 2.506444 CTAGAGCTTAGTACCCCTCCG 58.494 57.143 0.00 0.00 0.00 4.63
4610 4887 3.446310 GAAAAGCGGTTTTCTTTGGGA 57.554 42.857 34.10 0.00 45.60 4.37
4611 4888 3.787785 GAAAAGCGGTTTTCTTTGGGAA 58.212 40.909 34.10 0.00 45.60 3.97
4612 4889 3.897141 AAAGCGGTTTTCTTTGGGAAA 57.103 38.095 6.80 0.00 41.58 3.13
4680 5033 6.864151 ATAGCTAGGATATGTGCAGATTCA 57.136 37.500 0.00 0.00 0.00 2.57
4800 5153 8.299990 TGAACCGGGTTTTATTCATTTCATAT 57.700 30.769 14.69 0.00 0.00 1.78
4801 5154 8.754080 TGAACCGGGTTTTATTCATTTCATATT 58.246 29.630 14.69 0.00 0.00 1.28
4895 5248 1.098050 GGGTAGCATGGCTCACAAAG 58.902 55.000 0.00 0.00 40.44 2.77
4899 5252 3.366374 GGTAGCATGGCTCACAAAGAAAC 60.366 47.826 0.00 0.00 40.44 2.78
4901 5254 1.666888 GCATGGCTCACAAAGAAACGG 60.667 52.381 0.00 0.00 0.00 4.44
4902 5255 1.068333 CATGGCTCACAAAGAAACGGG 60.068 52.381 0.00 0.00 0.00 5.28
4903 5256 1.285950 GGCTCACAAAGAAACGGGC 59.714 57.895 0.00 0.00 0.00 6.13
4904 5257 1.452145 GGCTCACAAAGAAACGGGCA 61.452 55.000 0.00 0.00 0.00 5.36
4905 5258 0.383949 GCTCACAAAGAAACGGGCAA 59.616 50.000 0.00 0.00 0.00 4.52
4906 5259 1.600413 GCTCACAAAGAAACGGGCAAG 60.600 52.381 0.00 0.00 0.00 4.01
4907 5260 1.001378 CTCACAAAGAAACGGGCAAGG 60.001 52.381 0.00 0.00 0.00 3.61
4908 5261 1.028905 CACAAAGAAACGGGCAAGGA 58.971 50.000 0.00 0.00 0.00 3.36
4909 5262 1.001378 CACAAAGAAACGGGCAAGGAG 60.001 52.381 0.00 0.00 0.00 3.69
4910 5263 1.133915 ACAAAGAAACGGGCAAGGAGA 60.134 47.619 0.00 0.00 0.00 3.71
4911 5264 1.537202 CAAAGAAACGGGCAAGGAGAG 59.463 52.381 0.00 0.00 0.00 3.20
4912 5265 0.036875 AAGAAACGGGCAAGGAGAGG 59.963 55.000 0.00 0.00 0.00 3.69
4913 5266 0.836400 AGAAACGGGCAAGGAGAGGA 60.836 55.000 0.00 0.00 0.00 3.71
4914 5267 0.673956 GAAACGGGCAAGGAGAGGAC 60.674 60.000 0.00 0.00 0.00 3.85
4915 5268 2.450479 AAACGGGCAAGGAGAGGACG 62.450 60.000 0.00 0.00 0.00 4.79
4916 5269 3.382832 CGGGCAAGGAGAGGACGT 61.383 66.667 0.00 0.00 0.00 4.34
4917 5270 2.266055 GGGCAAGGAGAGGACGTG 59.734 66.667 0.00 0.00 0.00 4.49
4918 5271 2.266055 GGCAAGGAGAGGACGTGG 59.734 66.667 0.00 0.00 0.00 4.94
4919 5272 2.283529 GGCAAGGAGAGGACGTGGA 61.284 63.158 0.00 0.00 0.00 4.02
4920 5273 1.216710 GCAAGGAGAGGACGTGGAG 59.783 63.158 0.00 0.00 0.00 3.86
4921 5274 1.251527 GCAAGGAGAGGACGTGGAGA 61.252 60.000 0.00 0.00 0.00 3.71
4922 5275 1.257743 CAAGGAGAGGACGTGGAGAA 58.742 55.000 0.00 0.00 0.00 2.87
4923 5276 1.067495 CAAGGAGAGGACGTGGAGAAC 60.067 57.143 0.00 0.00 0.00 3.01
4924 5277 0.112606 AGGAGAGGACGTGGAGAACA 59.887 55.000 0.00 0.00 0.00 3.18
4925 5278 0.528470 GGAGAGGACGTGGAGAACAG 59.472 60.000 0.00 0.00 0.00 3.16
4926 5279 1.249407 GAGAGGACGTGGAGAACAGT 58.751 55.000 0.00 0.00 0.00 3.55
4927 5280 2.434428 GAGAGGACGTGGAGAACAGTA 58.566 52.381 0.00 0.00 0.00 2.74
4928 5281 2.818432 GAGAGGACGTGGAGAACAGTAA 59.182 50.000 0.00 0.00 0.00 2.24
4929 5282 3.228453 AGAGGACGTGGAGAACAGTAAA 58.772 45.455 0.00 0.00 0.00 2.01
4930 5283 3.640029 AGAGGACGTGGAGAACAGTAAAA 59.360 43.478 0.00 0.00 0.00 1.52
4931 5284 4.283722 AGAGGACGTGGAGAACAGTAAAAT 59.716 41.667 0.00 0.00 0.00 1.82
4932 5285 5.479375 AGAGGACGTGGAGAACAGTAAAATA 59.521 40.000 0.00 0.00 0.00 1.40
4933 5286 6.014840 AGAGGACGTGGAGAACAGTAAAATAA 60.015 38.462 0.00 0.00 0.00 1.40
4934 5287 6.527423 AGGACGTGGAGAACAGTAAAATAAA 58.473 36.000 0.00 0.00 0.00 1.40
4935 5288 6.993902 AGGACGTGGAGAACAGTAAAATAAAA 59.006 34.615 0.00 0.00 0.00 1.52
4936 5289 7.499895 AGGACGTGGAGAACAGTAAAATAAAAA 59.500 33.333 0.00 0.00 0.00 1.94
4983 5336 8.723942 TTTTTGGCATACTTGTACAAATGTTT 57.276 26.923 17.46 4.28 34.31 2.83
4984 5337 7.706281 TTTGGCATACTTGTACAAATGTTTG 57.294 32.000 17.46 14.43 43.62 2.93
4997 5350 5.441700 CAAATGTTTGTTGTGCACGTAAA 57.558 34.783 13.13 10.29 33.59 2.01
4998 5351 5.847715 CAAATGTTTGTTGTGCACGTAAAA 58.152 33.333 13.13 9.26 33.59 1.52
4999 5352 6.473521 CAAATGTTTGTTGTGCACGTAAAAT 58.526 32.000 13.13 1.46 33.59 1.82
5000 5353 6.654793 AATGTTTGTTGTGCACGTAAAATT 57.345 29.167 13.13 7.37 0.00 1.82
5001 5354 6.654793 ATGTTTGTTGTGCACGTAAAATTT 57.345 29.167 13.13 1.94 0.00 1.82
5002 5355 6.083925 TGTTTGTTGTGCACGTAAAATTTC 57.916 33.333 13.13 2.75 0.00 2.17
5003 5356 5.633601 TGTTTGTTGTGCACGTAAAATTTCA 59.366 32.000 13.13 5.09 0.00 2.69
5004 5357 6.311445 TGTTTGTTGTGCACGTAAAATTTCAT 59.689 30.769 13.13 0.00 0.00 2.57
5005 5358 6.503616 TTGTTGTGCACGTAAAATTTCATC 57.496 33.333 13.13 0.00 0.00 2.92
5006 5359 4.672862 TGTTGTGCACGTAAAATTTCATCG 59.327 37.500 13.13 0.00 0.00 3.84
5007 5360 3.230355 TGTGCACGTAAAATTTCATCGC 58.770 40.909 13.13 0.00 0.00 4.58
5008 5361 2.272700 GTGCACGTAAAATTTCATCGCG 59.727 45.455 0.00 0.00 0.00 5.87
5009 5362 2.157863 TGCACGTAAAATTTCATCGCGA 59.842 40.909 13.09 13.09 0.00 5.87
5010 5363 3.157510 GCACGTAAAATTTCATCGCGAA 58.842 40.909 15.24 0.00 0.00 4.70
5020 5373 3.403613 TTCATCGCGAAATCACATTGG 57.596 42.857 15.24 0.00 0.00 3.16
5021 5374 2.355197 TCATCGCGAAATCACATTGGT 58.645 42.857 15.24 0.00 0.00 3.67
5022 5375 2.351418 TCATCGCGAAATCACATTGGTC 59.649 45.455 15.24 0.00 0.00 4.02
5023 5376 0.718904 TCGCGAAATCACATTGGTCG 59.281 50.000 6.20 0.00 34.89 4.79
5024 5377 0.718904 CGCGAAATCACATTGGTCGA 59.281 50.000 0.00 0.00 33.63 4.20
5025 5378 1.127766 CGCGAAATCACATTGGTCGAA 59.872 47.619 0.00 0.00 33.63 3.71
5026 5379 2.774007 GCGAAATCACATTGGTCGAAG 58.226 47.619 0.00 0.00 33.63 3.79
5027 5380 2.476185 GCGAAATCACATTGGTCGAAGG 60.476 50.000 0.00 0.00 33.63 3.46
5028 5381 2.742053 CGAAATCACATTGGTCGAAGGT 59.258 45.455 0.00 0.00 33.63 3.50
5029 5382 3.424829 CGAAATCACATTGGTCGAAGGTG 60.425 47.826 6.08 6.08 45.79 4.00
5030 5383 2.859165 ATCACATTGGTCGAAGGTGT 57.141 45.000 11.36 0.00 44.90 4.16
5031 5384 1.877637 TCACATTGGTCGAAGGTGTG 58.122 50.000 11.36 12.58 44.90 3.82
5032 5385 0.874390 CACATTGGTCGAAGGTGTGG 59.126 55.000 4.43 0.00 40.70 4.17
5033 5386 0.472471 ACATTGGTCGAAGGTGTGGT 59.528 50.000 0.00 0.00 0.00 4.16
5034 5387 1.695242 ACATTGGTCGAAGGTGTGGTA 59.305 47.619 0.00 0.00 0.00 3.25
5035 5388 2.105134 ACATTGGTCGAAGGTGTGGTAA 59.895 45.455 0.00 0.00 0.00 2.85
5036 5389 3.142951 CATTGGTCGAAGGTGTGGTAAA 58.857 45.455 0.00 0.00 0.00 2.01
5037 5390 3.278668 TTGGTCGAAGGTGTGGTAAAA 57.721 42.857 0.00 0.00 0.00 1.52
5038 5391 3.278668 TGGTCGAAGGTGTGGTAAAAA 57.721 42.857 0.00 0.00 0.00 1.94
5062 5415 8.679288 AAAACAAAATCGATGCTCTAAGAATG 57.321 30.769 0.00 0.00 0.00 2.67
5063 5416 6.992063 ACAAAATCGATGCTCTAAGAATGT 57.008 33.333 0.00 0.00 0.00 2.71
5064 5417 7.383102 ACAAAATCGATGCTCTAAGAATGTT 57.617 32.000 0.00 0.00 0.00 2.71
5065 5418 8.492673 ACAAAATCGATGCTCTAAGAATGTTA 57.507 30.769 0.00 0.00 0.00 2.41
5066 5419 8.391106 ACAAAATCGATGCTCTAAGAATGTTAC 58.609 33.333 0.00 0.00 0.00 2.50
5067 5420 8.607459 CAAAATCGATGCTCTAAGAATGTTACT 58.393 33.333 0.00 0.00 0.00 2.24
5068 5421 8.723942 AAATCGATGCTCTAAGAATGTTACTT 57.276 30.769 0.00 0.00 0.00 2.24
5069 5422 9.817809 AAATCGATGCTCTAAGAATGTTACTTA 57.182 29.630 0.00 0.00 0.00 2.24
5070 5423 8.804688 ATCGATGCTCTAAGAATGTTACTTAC 57.195 34.615 0.00 0.00 0.00 2.34
5071 5424 7.768240 TCGATGCTCTAAGAATGTTACTTACA 58.232 34.615 0.00 0.00 41.97 2.41
5072 5425 8.248253 TCGATGCTCTAAGAATGTTACTTACAA 58.752 33.333 0.00 0.00 40.89 2.41
5073 5426 8.869897 CGATGCTCTAAGAATGTTACTTACAAA 58.130 33.333 0.00 0.00 40.89 2.83
5076 5429 8.504005 TGCTCTAAGAATGTTACTTACAAAAGC 58.496 33.333 0.00 0.00 40.89 3.51
5077 5430 8.504005 GCTCTAAGAATGTTACTTACAAAAGCA 58.496 33.333 0.00 0.00 40.89 3.91
5096 5449 5.934935 AGCATTTTGGAGCTTTGATTTTG 57.065 34.783 0.00 0.00 38.01 2.44
5097 5450 5.370679 AGCATTTTGGAGCTTTGATTTTGT 58.629 33.333 0.00 0.00 38.01 2.83
5098 5451 5.824097 AGCATTTTGGAGCTTTGATTTTGTT 59.176 32.000 0.00 0.00 38.01 2.83
5099 5452 6.319405 AGCATTTTGGAGCTTTGATTTTGTTT 59.681 30.769 0.00 0.00 38.01 2.83
5100 5453 6.974048 GCATTTTGGAGCTTTGATTTTGTTTT 59.026 30.769 0.00 0.00 0.00 2.43
5101 5454 7.488792 GCATTTTGGAGCTTTGATTTTGTTTTT 59.511 29.630 0.00 0.00 0.00 1.94
5118 5471 2.791383 TTTTTGGCATGACTTCCACG 57.209 45.000 0.00 0.00 30.97 4.94
5119 5472 1.974265 TTTTGGCATGACTTCCACGA 58.026 45.000 0.00 0.00 30.97 4.35
5120 5473 1.974265 TTTGGCATGACTTCCACGAA 58.026 45.000 0.00 0.00 30.97 3.85
5121 5474 2.198827 TTGGCATGACTTCCACGAAT 57.801 45.000 0.00 0.00 30.97 3.34
5122 5475 1.452110 TGGCATGACTTCCACGAATG 58.548 50.000 0.00 0.00 0.00 2.67
5123 5476 1.271325 TGGCATGACTTCCACGAATGT 60.271 47.619 0.00 0.00 0.00 2.71
5124 5477 1.131126 GGCATGACTTCCACGAATGTG 59.869 52.381 0.00 0.00 46.00 3.21
5158 5511 7.606858 TGAAAATTTTCATGCACAAGAAACA 57.393 28.000 26.01 2.76 41.88 2.83
5159 5512 8.211116 TGAAAATTTTCATGCACAAGAAACAT 57.789 26.923 26.01 5.62 41.88 2.71
5160 5513 8.675504 TGAAAATTTTCATGCACAAGAAACATT 58.324 25.926 26.01 9.68 41.88 2.71
5161 5514 9.161684 GAAAATTTTCATGCACAAGAAACATTC 57.838 29.630 23.06 10.11 37.15 2.67
5162 5515 5.886715 TTTTCATGCACAAGAAACATTCG 57.113 34.783 9.54 0.00 33.82 3.34
5163 5516 4.566545 TTCATGCACAAGAAACATTCGT 57.433 36.364 0.00 0.00 34.02 3.85
5164 5517 3.887741 TCATGCACAAGAAACATTCGTG 58.112 40.909 0.00 4.80 43.44 4.35
5165 5518 3.563390 TCATGCACAAGAAACATTCGTGA 59.437 39.130 11.93 0.00 40.88 4.35
5166 5519 4.036144 TCATGCACAAGAAACATTCGTGAA 59.964 37.500 11.93 0.00 40.88 3.18
5167 5520 4.362932 TGCACAAGAAACATTCGTGAAA 57.637 36.364 11.93 0.00 40.88 2.69
5168 5521 4.350346 TGCACAAGAAACATTCGTGAAAG 58.650 39.130 11.93 4.19 40.88 2.62
5169 5522 4.142491 TGCACAAGAAACATTCGTGAAAGT 60.142 37.500 11.93 0.00 40.88 2.66
5170 5523 5.065346 TGCACAAGAAACATTCGTGAAAGTA 59.935 36.000 11.93 0.83 40.88 2.24
5171 5524 6.142817 GCACAAGAAACATTCGTGAAAGTAT 58.857 36.000 11.93 0.00 40.88 2.12
5172 5525 6.086765 GCACAAGAAACATTCGTGAAAGTATG 59.913 38.462 11.93 1.79 40.88 2.39
5173 5526 7.132213 CACAAGAAACATTCGTGAAAGTATGT 58.868 34.615 11.93 0.00 40.88 2.29
5174 5527 7.321271 CACAAGAAACATTCGTGAAAGTATGTC 59.679 37.037 11.93 0.00 40.88 3.06
5175 5528 7.011950 ACAAGAAACATTCGTGAAAGTATGTCA 59.988 33.333 11.93 0.00 40.88 3.58
5226 5579 5.651387 TTTTGATTTCACTGTTCACACCA 57.349 34.783 0.00 0.00 0.00 4.17
5227 5580 4.898829 TTGATTTCACTGTTCACACCAG 57.101 40.909 0.00 0.00 36.01 4.00
5228 5581 3.213506 TGATTTCACTGTTCACACCAGG 58.786 45.455 0.00 0.00 34.16 4.45
5229 5582 3.118075 TGATTTCACTGTTCACACCAGGA 60.118 43.478 0.00 0.00 34.16 3.86
5230 5583 2.620251 TTCACTGTTCACACCAGGAG 57.380 50.000 0.00 0.00 34.16 3.69
5231 5584 0.106708 TCACTGTTCACACCAGGAGC 59.893 55.000 0.00 0.00 34.16 4.70
5232 5585 0.179048 CACTGTTCACACCAGGAGCA 60.179 55.000 0.00 0.00 34.16 4.26
5233 5586 0.767375 ACTGTTCACACCAGGAGCAT 59.233 50.000 0.00 0.00 34.16 3.79
5234 5587 1.143684 ACTGTTCACACCAGGAGCATT 59.856 47.619 0.00 0.00 34.16 3.56
5235 5588 2.233271 CTGTTCACACCAGGAGCATTT 58.767 47.619 0.00 0.00 0.00 2.32
5236 5589 1.955778 TGTTCACACCAGGAGCATTTG 59.044 47.619 0.00 0.00 0.00 2.32
5237 5590 0.961019 TTCACACCAGGAGCATTTGC 59.039 50.000 0.00 0.00 42.49 3.68
5247 5600 4.102113 GCATTTGCTCCTGGGTGT 57.898 55.556 0.00 0.00 38.21 4.16
5248 5601 3.264574 GCATTTGCTCCTGGGTGTA 57.735 52.632 0.00 0.00 38.21 2.90
5249 5602 1.098050 GCATTTGCTCCTGGGTGTAG 58.902 55.000 0.00 0.00 38.21 2.74
5250 5603 1.340017 GCATTTGCTCCTGGGTGTAGA 60.340 52.381 0.00 0.00 38.21 2.59
5251 5604 2.879756 GCATTTGCTCCTGGGTGTAGAA 60.880 50.000 0.00 0.00 38.21 2.10
5252 5605 3.624777 CATTTGCTCCTGGGTGTAGAAT 58.375 45.455 0.00 0.00 0.00 2.40
5253 5606 2.787473 TTGCTCCTGGGTGTAGAATG 57.213 50.000 0.00 0.00 0.00 2.67
5254 5607 0.911769 TGCTCCTGGGTGTAGAATGG 59.088 55.000 0.00 0.00 0.00 3.16
5255 5608 0.912486 GCTCCTGGGTGTAGAATGGT 59.088 55.000 0.00 0.00 0.00 3.55
5256 5609 2.116238 GCTCCTGGGTGTAGAATGGTA 58.884 52.381 0.00 0.00 0.00 3.25
5257 5610 2.158943 GCTCCTGGGTGTAGAATGGTAC 60.159 54.545 0.00 0.00 0.00 3.34
5258 5611 3.375699 CTCCTGGGTGTAGAATGGTACT 58.624 50.000 0.00 0.00 0.00 2.73
5259 5612 3.775316 CTCCTGGGTGTAGAATGGTACTT 59.225 47.826 0.00 0.00 0.00 2.24
5260 5613 4.172807 TCCTGGGTGTAGAATGGTACTTT 58.827 43.478 0.00 0.00 0.00 2.66
5261 5614 4.224370 TCCTGGGTGTAGAATGGTACTTTC 59.776 45.833 0.00 0.00 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 45 3.030291 TGAAAGATTATGCCCGGCAAAT 58.970 40.909 18.00 16.40 43.62 2.32
111 117 3.926821 TGATTTCCAACTAAAACGGGC 57.073 42.857 0.00 0.00 0.00 6.13
145 152 8.856153 TTCAATGTGTTGAGGCTACTAATTAA 57.144 30.769 0.00 0.00 44.62 1.40
158 166 5.880332 GGATTAGTAGGCTTCAATGTGTTGA 59.120 40.000 0.00 0.00 42.41 3.18
210 223 7.690256 AGGCTAATTAAAGAAAGGACTTGAGA 58.310 34.615 0.00 0.00 0.00 3.27
241 254 8.319057 TCAAGTAGATGAGGCTAATTAAAGGA 57.681 34.615 0.00 0.00 28.69 3.36
242 255 8.964476 TTCAAGTAGATGAGGCTAATTAAAGG 57.036 34.615 0.00 0.00 28.69 3.11
250 263 9.815306 AGTAGAATATTCAAGTAGATGAGGCTA 57.185 33.333 17.56 0.00 0.00 3.93
251 264 8.719645 AGTAGAATATTCAAGTAGATGAGGCT 57.280 34.615 17.56 0.00 0.00 4.58
296 309 7.773149 TGGTAAACCGGTGGAATAATTAAATG 58.227 34.615 8.52 0.00 39.43 2.32
297 311 7.957992 TGGTAAACCGGTGGAATAATTAAAT 57.042 32.000 8.52 0.00 39.43 1.40
378 392 7.944729 AGCAAATGAGCTAATTAAAGGAAGA 57.055 32.000 0.00 0.00 44.50 2.87
416 430 4.704540 ACGAATGGCAATCCTCATGTTTAA 59.295 37.500 0.00 0.00 0.00 1.52
429 443 7.497595 ACTCACTCTAAATATACGAATGGCAA 58.502 34.615 0.00 0.00 0.00 4.52
557 581 9.958180 TCATAGAGACAGTGAAAAATAATTGGA 57.042 29.630 0.00 0.00 0.00 3.53
573 597 6.377146 GCCTTTTATGGGTTTTCATAGAGACA 59.623 38.462 0.00 0.00 32.05 3.41
586 610 2.938428 TTGATGGGCCTTTTATGGGT 57.062 45.000 4.53 0.00 0.00 4.51
610 634 2.813908 CACGCGGGCAGGTACTTC 60.814 66.667 12.47 0.00 34.60 3.01
620 644 1.851021 TTGATTTGAGTGCACGCGGG 61.851 55.000 16.02 7.92 0.00 6.13
734 769 8.963725 TCTCTTCAGATACGACCAAACTTTATA 58.036 33.333 0.00 0.00 0.00 0.98
746 782 5.926542 CAGTTGGTTTTCTCTTCAGATACGA 59.073 40.000 0.00 0.00 0.00 3.43
753 789 2.951642 CTGCCAGTTGGTTTTCTCTTCA 59.048 45.455 0.00 0.00 37.57 3.02
757 793 0.315251 GGCTGCCAGTTGGTTTTCTC 59.685 55.000 15.17 0.00 37.57 2.87
779 815 5.554822 TTAATCCGAGTTTTATGCCACAC 57.445 39.130 0.00 0.00 0.00 3.82
805 841 3.851976 TTTTATTTTATGGCACGCGGT 57.148 38.095 12.47 0.00 0.00 5.68
830 866 0.449388 GTTCTTGCGGCATGAAGGAG 59.551 55.000 25.82 10.60 30.23 3.69
831 867 0.250684 TGTTCTTGCGGCATGAAGGA 60.251 50.000 25.82 15.61 30.23 3.36
832 868 0.813184 ATGTTCTTGCGGCATGAAGG 59.187 50.000 25.82 6.37 30.23 3.46
833 869 1.469703 TGATGTTCTTGCGGCATGAAG 59.530 47.619 25.82 11.97 30.23 3.02
866 902 7.602644 ACGTAATAGCTCAGTGAAATTCAGAAA 59.397 33.333 0.00 0.00 0.00 2.52
1350 1390 3.246112 TCCCACAACACCCCCTCG 61.246 66.667 0.00 0.00 0.00 4.63
1668 1722 5.411831 AGTAGCATGAGATCAAGACACAA 57.588 39.130 0.00 0.00 0.00 3.33
1717 1771 1.750193 AGTTCCCATGCATAACCACG 58.250 50.000 0.00 0.00 0.00 4.94
1744 1798 1.393539 ACATAAGTGATGAACGCGCAC 59.606 47.619 5.73 5.76 39.06 5.34
2014 2080 2.818432 TGTCGAAGAACAGAGGGAGTAC 59.182 50.000 0.00 0.00 39.69 2.73
2029 2095 5.049954 CCTTCGTTCCAAAATAAGTGTCGAA 60.050 40.000 0.00 0.00 34.54 3.71
2030 2096 4.449743 CCTTCGTTCCAAAATAAGTGTCGA 59.550 41.667 0.00 0.00 0.00 4.20
2063 2129 8.755028 TCCATACAGCACTCAGTATACTTAAAA 58.245 33.333 1.56 0.00 30.23 1.52
2130 2204 5.491982 AGGAAAATACTTCACTTCGAGCAT 58.508 37.500 0.00 0.00 0.00 3.79
2135 2209 9.760660 CAATTTAGAGGAAAATACTTCACTTCG 57.239 33.333 0.00 0.00 0.00 3.79
2162 2236 9.781834 CTAACTCATAAAGAAAACACAACACAA 57.218 29.630 0.00 0.00 0.00 3.33
2165 2239 9.997482 GTTCTAACTCATAAAGAAAACACAACA 57.003 29.630 0.00 0.00 31.41 3.33
2184 2258 4.278419 ACAGAACAATGCAAGGGTTCTAAC 59.722 41.667 22.56 4.55 46.89 2.34
2562 2636 8.500753 AATAAACCATGACTCGCATAGTTTTA 57.499 30.769 7.21 0.06 43.25 1.52
3016 3095 3.519510 ACCAAGCTAAGTTGCCAGAGATA 59.480 43.478 0.00 0.00 0.00 1.98
3238 3330 9.665264 AAATAAGAACACAAAGAAATCGTCTTC 57.335 29.630 0.00 0.00 46.36 2.87
3325 3417 4.718940 AGGTGGCATAAACAATGTAAGC 57.281 40.909 0.00 0.00 37.93 3.09
3346 3438 8.972127 AGATATACTGTTTCAGAAGCAGAAGTA 58.028 33.333 28.27 18.19 35.18 2.24
3448 3540 8.784043 GTCAAAAACGCTCTTATATTATGGGAT 58.216 33.333 0.00 0.00 0.00 3.85
3669 3761 3.483808 TGTGAGGCAAACACATGTAGA 57.516 42.857 0.00 0.00 42.20 2.59
3806 3902 1.391933 ATGCCCGTGCTCTCGTATGA 61.392 55.000 0.00 0.00 38.71 2.15
3808 3904 1.000163 CTTATGCCCGTGCTCTCGTAT 60.000 52.381 0.00 0.00 38.71 3.06
3810 3906 1.141881 CTTATGCCCGTGCTCTCGT 59.858 57.895 0.00 0.00 38.71 4.18
3811 3907 0.460284 AACTTATGCCCGTGCTCTCG 60.460 55.000 0.00 0.00 38.71 4.04
3891 3990 5.105392 AGTGAATGGTGCTGAAAAGTGAAAA 60.105 36.000 0.00 0.00 0.00 2.29
3892 3991 4.402155 AGTGAATGGTGCTGAAAAGTGAAA 59.598 37.500 0.00 0.00 0.00 2.69
3893 3992 3.953612 AGTGAATGGTGCTGAAAAGTGAA 59.046 39.130 0.00 0.00 0.00 3.18
3894 3993 3.316029 CAGTGAATGGTGCTGAAAAGTGA 59.684 43.478 0.00 0.00 32.39 3.41
3895 3994 3.067180 ACAGTGAATGGTGCTGAAAAGTG 59.933 43.478 0.00 0.00 34.60 3.16
3896 3995 3.290710 ACAGTGAATGGTGCTGAAAAGT 58.709 40.909 0.00 0.00 34.60 2.66
3897 3996 3.304928 GGACAGTGAATGGTGCTGAAAAG 60.305 47.826 0.00 0.00 34.60 2.27
4003 4102 4.000988 GGAAAGCACAGATTCGAACCTAA 58.999 43.478 0.00 0.00 0.00 2.69
4156 4255 2.226962 AGAGCACCGAGGGTAAGTTA 57.773 50.000 0.00 0.00 32.11 2.24
4320 4419 3.181329 TCCAGCCCTTCTCAATCTGTAA 58.819 45.455 0.00 0.00 0.00 2.41
4336 4435 0.538287 ACTTTGTTCAGGGCTCCAGC 60.538 55.000 0.00 0.00 41.14 4.85
4346 4445 3.554934 ACCAAGATGCTCACTTTGTTCA 58.445 40.909 0.00 0.00 0.00 3.18
4348 4447 2.887152 GGACCAAGATGCTCACTTTGTT 59.113 45.455 0.00 0.00 0.00 2.83
4378 4477 7.332430 AGGACGAATCTAGATATCTACGTCAAG 59.668 40.741 32.52 18.09 41.71 3.02
4389 4488 6.942976 ACCAAACAAAGGACGAATCTAGATA 58.057 36.000 5.46 0.00 0.00 1.98
4399 4498 4.364415 TCTTTCAACCAAACAAAGGACG 57.636 40.909 0.00 0.00 0.00 4.79
4406 4505 5.913137 ACTTGACATCTTTCAACCAAACA 57.087 34.783 0.00 0.00 32.02 2.83
4427 4526 4.160736 AGCCTTTGAGCGAACAAAATAC 57.839 40.909 8.33 2.78 38.90 1.89
4447 4546 5.886960 ACAAATTTACAAGAGGCTGCTAG 57.113 39.130 0.00 0.00 0.00 3.42
4546 4645 3.637229 GGTACTAAGCTCTAGCATGTGGA 59.363 47.826 4.54 0.00 45.16 4.02
4600 4877 1.065851 GCGACCGTTTTCCCAAAGAAA 59.934 47.619 0.00 0.00 42.82 2.52
4601 4878 0.664224 GCGACCGTTTTCCCAAAGAA 59.336 50.000 0.00 0.00 0.00 2.52
4602 4879 0.464013 TGCGACCGTTTTCCCAAAGA 60.464 50.000 0.00 0.00 0.00 2.52
4603 4880 0.040425 CTGCGACCGTTTTCCCAAAG 60.040 55.000 0.00 0.00 0.00 2.77
4604 4881 0.748729 ACTGCGACCGTTTTCCCAAA 60.749 50.000 0.00 0.00 0.00 3.28
4605 4882 0.748729 AACTGCGACCGTTTTCCCAA 60.749 50.000 0.00 0.00 0.00 4.12
4606 4883 1.153127 AACTGCGACCGTTTTCCCA 60.153 52.632 0.00 0.00 0.00 4.37
4607 4884 1.161563 TGAACTGCGACCGTTTTCCC 61.162 55.000 0.00 0.00 0.00 3.97
4608 4885 0.658897 TTGAACTGCGACCGTTTTCC 59.341 50.000 0.00 0.00 0.00 3.13
4609 4886 1.920272 GCTTGAACTGCGACCGTTTTC 60.920 52.381 0.00 0.00 0.00 2.29
4610 4887 0.028902 GCTTGAACTGCGACCGTTTT 59.971 50.000 0.00 0.00 0.00 2.43
4611 4888 1.647084 GCTTGAACTGCGACCGTTT 59.353 52.632 0.00 0.00 0.00 3.60
4612 4889 3.330275 GCTTGAACTGCGACCGTT 58.670 55.556 0.00 0.00 0.00 4.44
4654 4931 8.985922 TGAATCTGCACATATCCTAGCTATTAT 58.014 33.333 0.00 0.00 0.00 1.28
4763 5116 1.333619 CCCGGTTCAAAGTGTCACAAG 59.666 52.381 5.62 0.00 0.00 3.16
4895 5248 0.673956 GTCCTCTCCTTGCCCGTTTC 60.674 60.000 0.00 0.00 0.00 2.78
4899 5252 3.382832 ACGTCCTCTCCTTGCCCG 61.383 66.667 0.00 0.00 0.00 6.13
4901 5254 2.232298 CTCCACGTCCTCTCCTTGCC 62.232 65.000 0.00 0.00 0.00 4.52
4902 5255 1.216710 CTCCACGTCCTCTCCTTGC 59.783 63.158 0.00 0.00 0.00 4.01
4903 5256 1.067495 GTTCTCCACGTCCTCTCCTTG 60.067 57.143 0.00 0.00 0.00 3.61
4904 5257 1.258676 GTTCTCCACGTCCTCTCCTT 58.741 55.000 0.00 0.00 0.00 3.36
4905 5258 0.112606 TGTTCTCCACGTCCTCTCCT 59.887 55.000 0.00 0.00 0.00 3.69
4906 5259 0.528470 CTGTTCTCCACGTCCTCTCC 59.472 60.000 0.00 0.00 0.00 3.71
4907 5260 1.249407 ACTGTTCTCCACGTCCTCTC 58.751 55.000 0.00 0.00 0.00 3.20
4908 5261 2.581216 TACTGTTCTCCACGTCCTCT 57.419 50.000 0.00 0.00 0.00 3.69
4909 5262 3.655276 TTTACTGTTCTCCACGTCCTC 57.345 47.619 0.00 0.00 0.00 3.71
4910 5263 4.618920 ATTTTACTGTTCTCCACGTCCT 57.381 40.909 0.00 0.00 0.00 3.85
4911 5264 6.790285 TTTATTTTACTGTTCTCCACGTCC 57.210 37.500 0.00 0.00 0.00 4.79
4958 5311 8.607459 CAAACATTTGTACAAGTATGCCAAAAA 58.393 29.630 16.68 0.00 35.57 1.94
4959 5312 8.136057 CAAACATTTGTACAAGTATGCCAAAA 57.864 30.769 16.68 0.00 35.57 2.44
4960 5313 7.706281 CAAACATTTGTACAAGTATGCCAAA 57.294 32.000 16.68 0.00 36.05 3.28
4975 5328 5.441700 TTTACGTGCACAACAAACATTTG 57.558 34.783 18.64 2.77 43.62 2.32
4976 5329 6.654793 ATTTTACGTGCACAACAAACATTT 57.345 29.167 18.64 0.00 0.00 2.32
4977 5330 6.654793 AATTTTACGTGCACAACAAACATT 57.345 29.167 18.64 11.51 0.00 2.71
4978 5331 6.311445 TGAAATTTTACGTGCACAACAAACAT 59.689 30.769 18.64 4.51 0.00 2.71
4979 5332 5.633601 TGAAATTTTACGTGCACAACAAACA 59.366 32.000 18.64 5.00 0.00 2.83
4980 5333 6.083925 TGAAATTTTACGTGCACAACAAAC 57.916 33.333 18.64 2.63 0.00 2.93
4981 5334 6.291322 CGATGAAATTTTACGTGCACAACAAA 60.291 34.615 18.64 11.77 0.00 2.83
4982 5335 5.172232 CGATGAAATTTTACGTGCACAACAA 59.828 36.000 18.64 4.10 0.00 2.83
4983 5336 4.672862 CGATGAAATTTTACGTGCACAACA 59.327 37.500 18.64 0.00 0.00 3.33
4984 5337 4.431086 GCGATGAAATTTTACGTGCACAAC 60.431 41.667 18.64 0.00 0.00 3.32
4985 5338 3.666334 GCGATGAAATTTTACGTGCACAA 59.334 39.130 18.64 3.45 0.00 3.33
4986 5339 3.230355 GCGATGAAATTTTACGTGCACA 58.770 40.909 18.64 0.00 0.00 4.57
4987 5340 2.272700 CGCGATGAAATTTTACGTGCAC 59.727 45.455 6.82 6.82 0.00 4.57
4988 5341 2.157863 TCGCGATGAAATTTTACGTGCA 59.842 40.909 3.71 0.00 35.07 4.57
4989 5342 2.764768 TCGCGATGAAATTTTACGTGC 58.235 42.857 3.71 6.92 35.07 5.34
5000 5353 2.746904 ACCAATGTGATTTCGCGATGAA 59.253 40.909 10.88 1.65 33.85 2.57
5001 5354 2.351418 GACCAATGTGATTTCGCGATGA 59.649 45.455 10.88 1.56 0.00 2.92
5002 5355 2.708514 GACCAATGTGATTTCGCGATG 58.291 47.619 10.88 1.69 0.00 3.84
5003 5356 1.327460 CGACCAATGTGATTTCGCGAT 59.673 47.619 10.88 0.00 0.00 4.58
5004 5357 0.718904 CGACCAATGTGATTTCGCGA 59.281 50.000 3.71 3.71 0.00 5.87
5005 5358 0.718904 TCGACCAATGTGATTTCGCG 59.281 50.000 0.00 0.00 0.00 5.87
5006 5359 2.476185 CCTTCGACCAATGTGATTTCGC 60.476 50.000 0.00 0.00 0.00 4.70
5007 5360 2.742053 ACCTTCGACCAATGTGATTTCG 59.258 45.455 0.00 0.00 0.00 3.46
5008 5361 3.502211 ACACCTTCGACCAATGTGATTTC 59.498 43.478 0.00 0.00 34.96 2.17
5009 5362 3.253188 CACACCTTCGACCAATGTGATTT 59.747 43.478 11.09 0.00 42.63 2.17
5010 5363 2.813754 CACACCTTCGACCAATGTGATT 59.186 45.455 11.09 0.00 42.63 2.57
5011 5364 2.426522 CACACCTTCGACCAATGTGAT 58.573 47.619 11.09 0.00 42.63 3.06
5012 5365 1.542328 CCACACCTTCGACCAATGTGA 60.542 52.381 16.02 0.00 42.63 3.58
5013 5366 0.874390 CCACACCTTCGACCAATGTG 59.126 55.000 10.03 10.03 40.28 3.21
5014 5367 0.472471 ACCACACCTTCGACCAATGT 59.528 50.000 0.00 0.00 0.00 2.71
5015 5368 2.465860 TACCACACCTTCGACCAATG 57.534 50.000 0.00 0.00 0.00 2.82
5016 5369 3.495434 TTTACCACACCTTCGACCAAT 57.505 42.857 0.00 0.00 0.00 3.16
5017 5370 3.278668 TTTTACCACACCTTCGACCAA 57.721 42.857 0.00 0.00 0.00 3.67
5018 5371 3.278668 TTTTTACCACACCTTCGACCA 57.721 42.857 0.00 0.00 0.00 4.02
5036 5389 9.132521 CATTCTTAGAGCATCGATTTTGTTTTT 57.867 29.630 0.00 0.00 42.67 1.94
5037 5390 8.299570 ACATTCTTAGAGCATCGATTTTGTTTT 58.700 29.630 0.00 0.00 42.67 2.43
5038 5391 7.820648 ACATTCTTAGAGCATCGATTTTGTTT 58.179 30.769 0.00 0.00 42.67 2.83
5039 5392 7.383102 ACATTCTTAGAGCATCGATTTTGTT 57.617 32.000 0.00 0.00 42.67 2.83
5040 5393 6.992063 ACATTCTTAGAGCATCGATTTTGT 57.008 33.333 0.00 0.00 42.67 2.83
5041 5394 8.607459 AGTAACATTCTTAGAGCATCGATTTTG 58.393 33.333 0.00 0.00 42.67 2.44
5042 5395 8.723942 AGTAACATTCTTAGAGCATCGATTTT 57.276 30.769 0.00 0.00 42.67 1.82
5043 5396 8.723942 AAGTAACATTCTTAGAGCATCGATTT 57.276 30.769 0.00 0.00 42.67 2.17
5044 5397 9.250624 GTAAGTAACATTCTTAGAGCATCGATT 57.749 33.333 0.00 0.00 42.67 3.34
5045 5398 8.414003 TGTAAGTAACATTCTTAGAGCATCGAT 58.586 33.333 0.00 0.00 34.21 3.59
5046 5399 7.768240 TGTAAGTAACATTCTTAGAGCATCGA 58.232 34.615 0.00 0.00 34.21 3.59
5047 5400 7.987268 TGTAAGTAACATTCTTAGAGCATCG 57.013 36.000 0.00 0.00 34.21 3.84
5050 5403 8.504005 GCTTTTGTAAGTAACATTCTTAGAGCA 58.496 33.333 0.00 0.00 38.10 4.26
5051 5404 8.504005 TGCTTTTGTAAGTAACATTCTTAGAGC 58.496 33.333 0.00 0.00 38.10 4.09
5057 5410 9.260002 CCAAAATGCTTTTGTAAGTAACATTCT 57.740 29.630 15.52 0.00 46.53 2.40
5058 5411 9.255304 TCCAAAATGCTTTTGTAAGTAACATTC 57.745 29.630 15.52 0.00 46.53 2.67
5059 5412 9.260002 CTCCAAAATGCTTTTGTAAGTAACATT 57.740 29.630 15.52 0.00 46.53 2.71
5060 5413 7.384932 GCTCCAAAATGCTTTTGTAAGTAACAT 59.615 33.333 15.52 0.00 46.53 2.71
5061 5414 6.699642 GCTCCAAAATGCTTTTGTAAGTAACA 59.300 34.615 15.52 0.00 46.53 2.41
5062 5415 6.923508 AGCTCCAAAATGCTTTTGTAAGTAAC 59.076 34.615 15.52 5.59 46.53 2.50
5063 5416 7.049799 AGCTCCAAAATGCTTTTGTAAGTAA 57.950 32.000 15.52 0.00 46.53 2.24
5064 5417 6.648879 AGCTCCAAAATGCTTTTGTAAGTA 57.351 33.333 15.52 0.00 46.53 2.24
5065 5418 5.535753 AGCTCCAAAATGCTTTTGTAAGT 57.464 34.783 15.52 5.96 46.53 2.24
5074 5427 5.370679 ACAAAATCAAAGCTCCAAAATGCT 58.629 33.333 0.00 0.00 41.82 3.79
5075 5428 5.678132 ACAAAATCAAAGCTCCAAAATGC 57.322 34.783 0.00 0.00 0.00 3.56
5076 5429 8.914328 AAAAACAAAATCAAAGCTCCAAAATG 57.086 26.923 0.00 0.00 0.00 2.32
5099 5452 2.302260 TCGTGGAAGTCATGCCAAAAA 58.698 42.857 0.00 0.00 35.63 1.94
5100 5453 1.974265 TCGTGGAAGTCATGCCAAAA 58.026 45.000 0.00 0.00 35.63 2.44
5101 5454 1.974265 TTCGTGGAAGTCATGCCAAA 58.026 45.000 0.00 0.00 35.63 3.28
5102 5455 1.811965 CATTCGTGGAAGTCATGCCAA 59.188 47.619 0.00 0.00 35.63 4.52
5103 5456 1.271325 ACATTCGTGGAAGTCATGCCA 60.271 47.619 0.00 0.00 32.54 4.92
5104 5457 1.131126 CACATTCGTGGAAGTCATGCC 59.869 52.381 0.00 0.00 39.64 4.40
5105 5458 2.076100 TCACATTCGTGGAAGTCATGC 58.924 47.619 0.00 0.00 43.79 4.06
5106 5459 4.952262 AATCACATTCGTGGAAGTCATG 57.048 40.909 0.00 0.00 43.79 3.07
5107 5460 5.003160 TGAAATCACATTCGTGGAAGTCAT 58.997 37.500 0.00 0.00 43.79 3.06
5108 5461 4.384940 TGAAATCACATTCGTGGAAGTCA 58.615 39.130 0.00 0.00 43.79 3.41
5109 5462 5.122239 TCATGAAATCACATTCGTGGAAGTC 59.878 40.000 8.82 0.00 43.42 3.01
5110 5463 5.003160 TCATGAAATCACATTCGTGGAAGT 58.997 37.500 8.82 0.00 43.42 3.01
5111 5464 5.550232 TCATGAAATCACATTCGTGGAAG 57.450 39.130 8.82 0.00 43.42 3.46
5112 5465 5.647225 TCATCATGAAATCACATTCGTGGAA 59.353 36.000 0.00 0.00 43.42 3.53
5113 5466 5.184711 TCATCATGAAATCACATTCGTGGA 58.815 37.500 0.00 0.00 43.42 4.02
5114 5467 5.488645 TCATCATGAAATCACATTCGTGG 57.511 39.130 0.00 0.00 43.42 4.94
5115 5468 7.800015 TTTTCATCATGAAATCACATTCGTG 57.200 32.000 13.68 3.45 44.75 4.35
5116 5469 8.991243 AATTTTCATCATGAAATCACATTCGT 57.009 26.923 13.68 0.00 44.75 3.85
5135 5488 9.161684 GAATGTTTCTTGTGCATGAAAATTTTC 57.838 29.630 21.60 21.60 36.60 2.29
5136 5489 7.851963 CGAATGTTTCTTGTGCATGAAAATTTT 59.148 29.630 2.28 2.28 36.60 1.82
5137 5490 7.011295 ACGAATGTTTCTTGTGCATGAAAATTT 59.989 29.630 12.67 10.03 36.60 1.82
5138 5491 6.479660 ACGAATGTTTCTTGTGCATGAAAATT 59.520 30.769 12.67 13.23 36.60 1.82
5139 5492 5.984926 ACGAATGTTTCTTGTGCATGAAAAT 59.015 32.000 12.67 7.88 36.60 1.82
5140 5493 5.231779 CACGAATGTTTCTTGTGCATGAAAA 59.768 36.000 12.67 6.44 36.60 2.29
5141 5494 4.739228 CACGAATGTTTCTTGTGCATGAAA 59.261 37.500 0.00 8.54 33.74 2.69
5142 5495 4.036144 TCACGAATGTTTCTTGTGCATGAA 59.964 37.500 0.00 0.00 31.53 2.57
5143 5496 3.563390 TCACGAATGTTTCTTGTGCATGA 59.437 39.130 0.00 0.00 31.53 3.07
5144 5497 3.887741 TCACGAATGTTTCTTGTGCATG 58.112 40.909 0.00 0.00 31.53 4.06
5145 5498 4.566545 TTCACGAATGTTTCTTGTGCAT 57.433 36.364 0.00 0.00 31.53 3.96
5146 5499 4.142491 ACTTTCACGAATGTTTCTTGTGCA 60.142 37.500 0.00 0.00 31.53 4.57
5147 5500 4.351192 ACTTTCACGAATGTTTCTTGTGC 58.649 39.130 0.00 0.00 31.53 4.57
5148 5501 7.132213 ACATACTTTCACGAATGTTTCTTGTG 58.868 34.615 3.94 0.00 31.53 3.33
5149 5502 7.011950 TGACATACTTTCACGAATGTTTCTTGT 59.988 33.333 3.94 4.31 32.87 3.16
5150 5503 7.321271 GTGACATACTTTCACGAATGTTTCTTG 59.679 37.037 3.94 1.86 34.41 3.02
5151 5504 7.352739 GTGACATACTTTCACGAATGTTTCTT 58.647 34.615 3.94 0.00 34.41 2.52
5152 5505 6.073222 GGTGACATACTTTCACGAATGTTTCT 60.073 38.462 3.94 0.00 43.75 2.52
5153 5506 6.077838 GGTGACATACTTTCACGAATGTTTC 58.922 40.000 3.94 1.20 43.75 2.78
5154 5507 5.529430 TGGTGACATACTTTCACGAATGTTT 59.471 36.000 3.94 0.00 43.75 2.83
5155 5508 5.060506 TGGTGACATACTTTCACGAATGTT 58.939 37.500 3.94 0.00 43.75 2.71
5156 5509 4.637276 TGGTGACATACTTTCACGAATGT 58.363 39.130 0.00 4.07 43.75 2.71
5157 5510 5.605564 TTGGTGACATACTTTCACGAATG 57.394 39.130 0.00 0.00 43.75 2.67
5158 5511 6.627395 TTTTGGTGACATACTTTCACGAAT 57.373 33.333 0.00 0.00 43.75 3.34
5159 5512 6.438259 TTTTTGGTGACATACTTTCACGAA 57.562 33.333 0.00 0.00 43.75 3.85
5203 5556 6.030548 TGGTGTGAACAGTGAAATCAAAAA 57.969 33.333 0.00 0.00 0.00 1.94
5204 5557 5.394005 CCTGGTGTGAACAGTGAAATCAAAA 60.394 40.000 0.00 0.00 34.16 2.44
5205 5558 4.097741 CCTGGTGTGAACAGTGAAATCAAA 59.902 41.667 0.00 0.00 34.16 2.69
5206 5559 3.631686 CCTGGTGTGAACAGTGAAATCAA 59.368 43.478 0.00 0.00 34.16 2.57
5207 5560 3.118075 TCCTGGTGTGAACAGTGAAATCA 60.118 43.478 0.00 0.00 34.16 2.57
5208 5561 3.476552 TCCTGGTGTGAACAGTGAAATC 58.523 45.455 0.00 0.00 34.16 2.17
5209 5562 3.480470 CTCCTGGTGTGAACAGTGAAAT 58.520 45.455 0.00 0.00 34.16 2.17
5210 5563 2.917933 CTCCTGGTGTGAACAGTGAAA 58.082 47.619 0.00 0.00 34.16 2.69
5211 5564 1.475034 GCTCCTGGTGTGAACAGTGAA 60.475 52.381 0.00 0.00 34.16 3.18
5212 5565 0.106708 GCTCCTGGTGTGAACAGTGA 59.893 55.000 0.00 0.00 34.16 3.41
5213 5566 0.179048 TGCTCCTGGTGTGAACAGTG 60.179 55.000 0.00 0.00 34.16 3.66
5214 5567 0.767375 ATGCTCCTGGTGTGAACAGT 59.233 50.000 0.00 0.00 34.16 3.55
5215 5568 1.901591 AATGCTCCTGGTGTGAACAG 58.098 50.000 0.00 0.00 35.74 3.16
5216 5569 1.955778 CAAATGCTCCTGGTGTGAACA 59.044 47.619 0.00 0.00 0.00 3.18
5217 5570 1.336240 GCAAATGCTCCTGGTGTGAAC 60.336 52.381 0.00 0.00 38.21 3.18
5218 5571 0.961019 GCAAATGCTCCTGGTGTGAA 59.039 50.000 0.00 0.00 38.21 3.18
5219 5572 2.644887 GCAAATGCTCCTGGTGTGA 58.355 52.632 0.00 0.00 38.21 3.58
5230 5583 1.098050 CTACACCCAGGAGCAAATGC 58.902 55.000 0.00 0.00 42.49 3.56
5231 5584 2.787473 TCTACACCCAGGAGCAAATG 57.213 50.000 0.00 0.00 0.00 2.32
5232 5585 3.624777 CATTCTACACCCAGGAGCAAAT 58.375 45.455 0.00 0.00 0.00 2.32
5233 5586 2.290896 CCATTCTACACCCAGGAGCAAA 60.291 50.000 0.00 0.00 0.00 3.68
5234 5587 1.281867 CCATTCTACACCCAGGAGCAA 59.718 52.381 0.00 0.00 0.00 3.91
5235 5588 0.911769 CCATTCTACACCCAGGAGCA 59.088 55.000 0.00 0.00 0.00 4.26
5236 5589 0.912486 ACCATTCTACACCCAGGAGC 59.088 55.000 0.00 0.00 0.00 4.70
5237 5590 3.375699 AGTACCATTCTACACCCAGGAG 58.624 50.000 0.00 0.00 0.00 3.69
5238 5591 3.484953 AGTACCATTCTACACCCAGGA 57.515 47.619 0.00 0.00 0.00 3.86
5239 5592 4.514401 GAAAGTACCATTCTACACCCAGG 58.486 47.826 0.00 0.00 0.00 4.45
5240 5593 4.181578 CGAAAGTACCATTCTACACCCAG 58.818 47.826 7.25 0.00 0.00 4.45
5241 5594 3.055675 CCGAAAGTACCATTCTACACCCA 60.056 47.826 7.25 0.00 0.00 4.51
5242 5595 3.528532 CCGAAAGTACCATTCTACACCC 58.471 50.000 7.25 0.00 0.00 4.61
5243 5596 2.934553 GCCGAAAGTACCATTCTACACC 59.065 50.000 7.25 0.00 0.00 4.16
5244 5597 3.592059 TGCCGAAAGTACCATTCTACAC 58.408 45.455 7.25 0.00 0.00 2.90
5245 5598 3.965379 TGCCGAAAGTACCATTCTACA 57.035 42.857 7.25 3.33 0.00 2.74
5246 5599 3.621715 CCTTGCCGAAAGTACCATTCTAC 59.378 47.826 7.25 1.29 33.66 2.59
5247 5600 3.516300 TCCTTGCCGAAAGTACCATTCTA 59.484 43.478 7.25 0.00 33.66 2.10
5248 5601 2.304761 TCCTTGCCGAAAGTACCATTCT 59.695 45.455 7.25 0.00 33.66 2.40
5249 5602 2.678336 CTCCTTGCCGAAAGTACCATTC 59.322 50.000 0.00 0.00 33.66 2.67
5250 5603 2.304761 TCTCCTTGCCGAAAGTACCATT 59.695 45.455 0.00 0.00 33.66 3.16
5251 5604 1.906574 TCTCCTTGCCGAAAGTACCAT 59.093 47.619 0.00 0.00 33.66 3.55
5252 5605 1.344065 TCTCCTTGCCGAAAGTACCA 58.656 50.000 0.00 0.00 33.66 3.25
5253 5606 2.289506 ACTTCTCCTTGCCGAAAGTACC 60.290 50.000 0.00 0.00 33.66 3.34
5254 5607 3.041508 ACTTCTCCTTGCCGAAAGTAC 57.958 47.619 0.00 0.00 33.66 2.73
5255 5608 3.764237 AACTTCTCCTTGCCGAAAGTA 57.236 42.857 0.00 0.00 33.66 2.24
5256 5609 2.640316 AACTTCTCCTTGCCGAAAGT 57.360 45.000 0.00 0.00 33.66 2.66
5257 5610 3.990318 AAAACTTCTCCTTGCCGAAAG 57.010 42.857 0.00 0.00 35.47 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.