Multiple sequence alignment - TraesCS2B01G394100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G394100 chr2B 100.000 3468 0 0 1 3468 559169883 559166416 0.000000e+00 6405.0
1 TraesCS2B01G394100 chr2B 95.366 928 29 4 2541 3468 393861081 393861994 0.000000e+00 1463.0
2 TraesCS2B01G394100 chr2B 93.184 939 59 5 2530 3468 665870190 665871123 0.000000e+00 1375.0
3 TraesCS2B01G394100 chr2B 87.317 954 96 12 2536 3468 769006735 769007684 0.000000e+00 1068.0
4 TraesCS2B01G394100 chr2B 81.152 382 67 3 1125 1505 760829734 760829357 5.630000e-78 302.0
5 TraesCS2B01G394100 chr2D 92.444 1469 103 6 1073 2540 477105416 477103955 0.000000e+00 2091.0
6 TraesCS2B01G394100 chr2D 95.082 793 33 3 1750 2540 477040760 477039972 0.000000e+00 1243.0
7 TraesCS2B01G394100 chr2D 95.646 689 29 1 1073 1760 477053134 477052446 0.000000e+00 1105.0
8 TraesCS2B01G394100 chr2D 90.196 255 23 1 43 295 477106695 477106441 7.170000e-87 331.0
9 TraesCS2B01G394100 chr2D 80.628 382 69 3 1125 1505 620399183 620398806 1.220000e-74 291.0
10 TraesCS2B01G394100 chr2D 97.521 121 3 0 608 728 477105815 477105695 1.260000e-49 207.0
11 TraesCS2B01G394100 chr2A 89.684 1648 143 19 900 2540 619514268 619512641 0.000000e+00 2076.0
12 TraesCS2B01G394100 chr2A 94.963 1211 57 2 1073 2280 619583913 619582704 0.000000e+00 1895.0
13 TraesCS2B01G394100 chr2A 89.412 255 25 1 43 295 619515251 619514997 1.550000e-83 320.0
14 TraesCS2B01G394100 chr2A 91.031 223 17 2 68 287 619585103 619584881 7.280000e-77 298.0
15 TraesCS2B01G394100 chr2A 95.385 130 4 1 2270 2397 619570449 619570320 4.540000e-49 206.0
16 TraesCS2B01G394100 chr2A 94.215 121 7 0 608 728 619514443 619514323 5.910000e-43 185.0
17 TraesCS2B01G394100 chr2A 88.976 127 12 2 608 732 619584293 619584167 4.630000e-34 156.0
18 TraesCS2B01G394100 chr2A 92.063 63 1 2 399 457 619514998 619514936 6.170000e-13 86.1
19 TraesCS2B01G394100 chr1B 93.676 933 54 5 2537 3468 549428550 549429478 0.000000e+00 1391.0
20 TraesCS2B01G394100 chr1B 92.259 943 58 4 2537 3468 667326076 667327014 0.000000e+00 1323.0
21 TraesCS2B01G394100 chr4B 92.949 936 54 8 2537 3468 568720208 568721135 0.000000e+00 1352.0
22 TraesCS2B01G394100 chr4B 76.526 1278 262 33 1090 2346 138276161 138277421 0.000000e+00 664.0
23 TraesCS2B01G394100 chr4B 76.037 1302 268 34 1090 2368 137702463 137703743 1.360000e-178 636.0
24 TraesCS2B01G394100 chr4B 85.593 118 9 2 455 564 15599907 15599790 2.190000e-22 117.0
25 TraesCS2B01G394100 chr4B 97.143 35 1 0 537 571 239803646 239803680 3.740000e-05 60.2
26 TraesCS2B01G394100 chr7B 91.578 938 61 6 2541 3468 549379287 549380216 0.000000e+00 1279.0
27 TraesCS2B01G394100 chr7B 92.683 123 8 1 279 400 695049273 695049395 3.560000e-40 176.0
28 TraesCS2B01G394100 chr7B 84.211 133 12 3 441 564 646630124 646630256 1.690000e-23 121.0
29 TraesCS2B01G394100 chr7B 100.000 32 0 0 535 566 186110022 186109991 3.740000e-05 60.2
30 TraesCS2B01G394100 chr7B 100.000 31 0 0 535 565 49371807 49371777 1.340000e-04 58.4
31 TraesCS2B01G394100 chr5B 90.675 933 65 10 2538 3468 680684159 680685071 0.000000e+00 1221.0
32 TraesCS2B01G394100 chr5B 87.778 900 77 17 2544 3418 638666942 638666051 0.000000e+00 1022.0
33 TraesCS2B01G394100 chr5B 86.301 584 46 11 2532 3093 658929147 658929718 3.830000e-169 604.0
34 TraesCS2B01G394100 chr5B 90.476 84 8 0 452 535 706729472 706729555 1.020000e-20 111.0
35 TraesCS2B01G394100 chr5B 81.667 120 14 1 455 566 618287142 618287261 3.690000e-15 93.5
36 TraesCS2B01G394100 chr4A 93.032 818 52 4 2651 3468 664490216 664491028 0.000000e+00 1190.0
37 TraesCS2B01G394100 chr4A 77.487 1297 260 25 1090 2368 480557699 480556417 0.000000e+00 749.0
38 TraesCS2B01G394100 chr4A 77.273 1298 246 40 1090 2368 481064721 481063454 0.000000e+00 717.0
39 TraesCS2B01G394100 chr4A 77.095 1301 258 32 1090 2368 479624688 479623406 0.000000e+00 715.0
40 TraesCS2B01G394100 chr4A 76.984 1273 265 21 1090 2346 479431007 479429747 0.000000e+00 702.0
41 TraesCS2B01G394100 chr4A 94.286 35 2 0 537 571 685756087 685756053 2.000000e-03 54.7
42 TraesCS2B01G394100 chr3B 87.421 954 93 12 2537 3468 708751143 708752091 0.000000e+00 1072.0
43 TraesCS2B01G394100 chr3B 93.983 698 36 6 2772 3468 543581282 543580590 0.000000e+00 1051.0
44 TraesCS2B01G394100 chr3B 84.426 122 11 3 455 568 147369826 147369947 2.830000e-21 113.0
45 TraesCS2B01G394100 chr3B 88.764 89 9 1 446 533 95458396 95458484 1.320000e-19 108.0
46 TraesCS2B01G394100 chr4D 77.237 1274 241 37 1114 2368 96892550 96893793 0.000000e+00 701.0
47 TraesCS2B01G394100 chr4D 76.643 1293 262 32 1098 2368 96712175 96713449 0.000000e+00 678.0
48 TraesCS2B01G394100 chr3D 78.660 403 74 11 1101 1500 26073546 26073939 1.230000e-64 257.0
49 TraesCS2B01G394100 chr3D 91.935 124 9 1 281 403 537907648 537907771 4.600000e-39 172.0
50 TraesCS2B01G394100 chr3D 85.714 119 9 2 455 565 208640708 208640590 6.080000e-23 119.0
51 TraesCS2B01G394100 chr6B 95.575 113 5 0 294 406 460495408 460495296 7.650000e-42 182.0
52 TraesCS2B01G394100 chr6B 85.833 120 9 2 455 566 563489230 563489349 1.690000e-23 121.0
53 TraesCS2B01G394100 chr5D 94.783 115 6 0 294 408 432989612 432989726 2.750000e-41 180.0
54 TraesCS2B01G394100 chr5D 95.495 111 4 1 291 400 408791890 408792000 3.560000e-40 176.0
55 TraesCS2B01G394100 chr5D 97.778 45 0 1 1 44 288600216 288600260 3.710000e-10 76.8
56 TraesCS2B01G394100 chrUn 92.683 123 8 1 279 400 347838503 347838625 3.560000e-40 176.0
57 TraesCS2B01G394100 chrUn 92.683 123 8 1 279 400 441816852 441816730 3.560000e-40 176.0
58 TraesCS2B01G394100 chrUn 97.778 45 0 1 1 44 310406426 310406382 3.710000e-10 76.8
59 TraesCS2B01G394100 chrUn 97.778 45 0 1 1 44 363295121 363295165 3.710000e-10 76.8
60 TraesCS2B01G394100 chrUn 97.778 45 0 1 1 44 363297152 363297196 3.710000e-10 76.8
61 TraesCS2B01G394100 chrUn 97.778 45 0 1 1 44 401503976 401504020 3.710000e-10 76.8
62 TraesCS2B01G394100 chrUn 97.778 45 0 1 1 44 407407489 407407445 3.710000e-10 76.8
63 TraesCS2B01G394100 chr6A 94.737 114 5 1 294 407 70933927 70934039 3.560000e-40 176.0
64 TraesCS2B01G394100 chr6A 97.778 45 0 1 1 44 590155769 590155813 3.710000e-10 76.8
65 TraesCS2B01G394100 chr7D 90.076 131 9 4 291 418 46680195 46680066 2.140000e-37 167.0
66 TraesCS2B01G394100 chr7D 84.298 121 11 2 455 567 192019269 192019149 1.020000e-20 111.0
67 TraesCS2B01G394100 chr7D 91.026 78 7 0 458 535 568751683 568751606 4.730000e-19 106.0
68 TraesCS2B01G394100 chr7D 97.778 45 0 1 1 44 235847557 235847513 3.710000e-10 76.8
69 TraesCS2B01G394100 chr3A 83.898 118 11 3 455 564 552777391 552777274 4.730000e-19 106.0
70 TraesCS2B01G394100 chr1A 97.778 45 0 1 1 44 471209610 471209654 3.710000e-10 76.8
71 TraesCS2B01G394100 chr1A 76.812 138 15 8 455 575 27378310 27378173 1.040000e-05 62.1
72 TraesCS2B01G394100 chr1A 77.600 125 13 6 455 564 332051403 332051527 1.040000e-05 62.1
73 TraesCS2B01G394100 chr5A 76.230 122 21 5 456 569 513846601 513846722 1.340000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G394100 chr2B 559166416 559169883 3467 True 6405.000000 6405 100.000000 1 3468 1 chr2B.!!$R1 3467
1 TraesCS2B01G394100 chr2B 393861081 393861994 913 False 1463.000000 1463 95.366000 2541 3468 1 chr2B.!!$F1 927
2 TraesCS2B01G394100 chr2B 665870190 665871123 933 False 1375.000000 1375 93.184000 2530 3468 1 chr2B.!!$F2 938
3 TraesCS2B01G394100 chr2B 769006735 769007684 949 False 1068.000000 1068 87.317000 2536 3468 1 chr2B.!!$F3 932
4 TraesCS2B01G394100 chr2D 477039972 477040760 788 True 1243.000000 1243 95.082000 1750 2540 1 chr2D.!!$R1 790
5 TraesCS2B01G394100 chr2D 477052446 477053134 688 True 1105.000000 1105 95.646000 1073 1760 1 chr2D.!!$R2 687
6 TraesCS2B01G394100 chr2D 477103955 477106695 2740 True 876.333333 2091 93.387000 43 2540 3 chr2D.!!$R4 2497
7 TraesCS2B01G394100 chr2A 619582704 619585103 2399 True 783.000000 1895 91.656667 68 2280 3 chr2A.!!$R3 2212
8 TraesCS2B01G394100 chr2A 619512641 619515251 2610 True 666.775000 2076 91.343500 43 2540 4 chr2A.!!$R2 2497
9 TraesCS2B01G394100 chr1B 549428550 549429478 928 False 1391.000000 1391 93.676000 2537 3468 1 chr1B.!!$F1 931
10 TraesCS2B01G394100 chr1B 667326076 667327014 938 False 1323.000000 1323 92.259000 2537 3468 1 chr1B.!!$F2 931
11 TraesCS2B01G394100 chr4B 568720208 568721135 927 False 1352.000000 1352 92.949000 2537 3468 1 chr4B.!!$F4 931
12 TraesCS2B01G394100 chr4B 138276161 138277421 1260 False 664.000000 664 76.526000 1090 2346 1 chr4B.!!$F2 1256
13 TraesCS2B01G394100 chr4B 137702463 137703743 1280 False 636.000000 636 76.037000 1090 2368 1 chr4B.!!$F1 1278
14 TraesCS2B01G394100 chr7B 549379287 549380216 929 False 1279.000000 1279 91.578000 2541 3468 1 chr7B.!!$F1 927
15 TraesCS2B01G394100 chr5B 680684159 680685071 912 False 1221.000000 1221 90.675000 2538 3468 1 chr5B.!!$F3 930
16 TraesCS2B01G394100 chr5B 638666051 638666942 891 True 1022.000000 1022 87.778000 2544 3418 1 chr5B.!!$R1 874
17 TraesCS2B01G394100 chr5B 658929147 658929718 571 False 604.000000 604 86.301000 2532 3093 1 chr5B.!!$F2 561
18 TraesCS2B01G394100 chr4A 664490216 664491028 812 False 1190.000000 1190 93.032000 2651 3468 1 chr4A.!!$F1 817
19 TraesCS2B01G394100 chr4A 480556417 480557699 1282 True 749.000000 749 77.487000 1090 2368 1 chr4A.!!$R3 1278
20 TraesCS2B01G394100 chr4A 481063454 481064721 1267 True 717.000000 717 77.273000 1090 2368 1 chr4A.!!$R4 1278
21 TraesCS2B01G394100 chr4A 479623406 479624688 1282 True 715.000000 715 77.095000 1090 2368 1 chr4A.!!$R2 1278
22 TraesCS2B01G394100 chr4A 479429747 479431007 1260 True 702.000000 702 76.984000 1090 2346 1 chr4A.!!$R1 1256
23 TraesCS2B01G394100 chr3B 708751143 708752091 948 False 1072.000000 1072 87.421000 2537 3468 1 chr3B.!!$F3 931
24 TraesCS2B01G394100 chr3B 543580590 543581282 692 True 1051.000000 1051 93.983000 2772 3468 1 chr3B.!!$R1 696
25 TraesCS2B01G394100 chr4D 96892550 96893793 1243 False 701.000000 701 77.237000 1114 2368 1 chr4D.!!$F2 1254
26 TraesCS2B01G394100 chr4D 96712175 96713449 1274 False 678.000000 678 76.643000 1098 2368 1 chr4D.!!$F1 1270

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 1432 0.027586 GGTCGCGTCATTACCAATGC 59.972 55.0 5.77 0.0 38.77 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2658 3326 1.454847 GGGTTGCCACACACCAGAA 60.455 57.895 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.922058 ATAAACGATCTTAAACTAAAGCTCGA 57.078 30.769 14.48 0.00 44.00 4.04
35 36 6.629182 AACGATCTTAAACTAAAGCTCGAC 57.371 37.500 14.48 0.00 44.00 4.20
36 37 5.952033 ACGATCTTAAACTAAAGCTCGACT 58.048 37.500 14.48 0.00 44.00 4.18
37 38 6.028987 ACGATCTTAAACTAAAGCTCGACTC 58.971 40.000 14.48 0.00 44.00 3.36
38 39 5.169915 CGATCTTAAACTAAAGCTCGACTCG 59.830 44.000 4.36 0.00 44.00 4.18
39 40 5.618056 TCTTAAACTAAAGCTCGACTCGA 57.382 39.130 0.29 0.29 0.00 4.04
40 41 6.192234 TCTTAAACTAAAGCTCGACTCGAT 57.808 37.500 0.62 0.00 34.61 3.59
41 42 6.256686 TCTTAAACTAAAGCTCGACTCGATC 58.743 40.000 0.62 0.00 34.61 3.69
59 60 1.376683 CGTGCCATTTCCCCTTCGA 60.377 57.895 0.00 0.00 0.00 3.71
66 67 3.356290 CCATTTCCCCTTCGAAAGTCAT 58.644 45.455 0.00 0.00 35.31 3.06
112 113 5.394738 TGTATCCCTCCTAAGATGTAGTGG 58.605 45.833 0.00 0.00 0.00 4.00
128 129 6.650427 TGTAGTGGGAGACATGACATATAC 57.350 41.667 0.00 0.00 0.00 1.47
201 204 3.294214 GCTTTCCCATGTGGAGATGAAT 58.706 45.455 0.00 0.00 46.24 2.57
268 271 3.495100 CCTGCTACAAGACAAACCTCTGT 60.495 47.826 0.00 0.00 0.00 3.41
273 277 2.443255 ACAAGACAAACCTCTGTCCCAT 59.557 45.455 0.24 0.00 45.77 4.00
308 312 2.547826 GGAATTACTCCCTTCGTTCGG 58.452 52.381 0.00 0.00 38.44 4.30
309 313 2.167075 GGAATTACTCCCTTCGTTCGGA 59.833 50.000 0.00 0.00 38.44 4.55
310 314 3.368739 GGAATTACTCCCTTCGTTCGGAA 60.369 47.826 0.00 0.00 38.44 4.30
311 315 4.439968 GAATTACTCCCTTCGTTCGGAAT 58.560 43.478 0.00 0.00 33.26 3.01
312 316 3.967332 TTACTCCCTTCGTTCGGAATT 57.033 42.857 0.00 0.00 33.26 2.17
313 317 5.603170 ATTACTCCCTTCGTTCGGAATTA 57.397 39.130 0.00 0.00 33.26 1.40
314 318 3.242549 ACTCCCTTCGTTCGGAATTAC 57.757 47.619 0.00 0.00 33.26 1.89
315 319 2.830321 ACTCCCTTCGTTCGGAATTACT 59.170 45.455 0.00 0.00 33.26 2.24
316 320 3.260128 ACTCCCTTCGTTCGGAATTACTT 59.740 43.478 0.00 0.00 33.26 2.24
317 321 3.592059 TCCCTTCGTTCGGAATTACTTG 58.408 45.455 0.00 0.00 33.26 3.16
318 322 3.007182 TCCCTTCGTTCGGAATTACTTGT 59.993 43.478 0.00 0.00 33.26 3.16
319 323 3.370061 CCCTTCGTTCGGAATTACTTGTC 59.630 47.826 0.00 0.00 33.26 3.18
320 324 3.991773 CCTTCGTTCGGAATTACTTGTCA 59.008 43.478 0.00 0.00 33.26 3.58
321 325 4.143179 CCTTCGTTCGGAATTACTTGTCAC 60.143 45.833 0.00 0.00 33.26 3.67
322 326 3.979948 TCGTTCGGAATTACTTGTCACA 58.020 40.909 0.00 0.00 0.00 3.58
323 327 4.370049 TCGTTCGGAATTACTTGTCACAA 58.630 39.130 0.00 0.00 0.00 3.33
324 328 4.809958 TCGTTCGGAATTACTTGTCACAAA 59.190 37.500 0.00 0.00 0.00 2.83
325 329 5.293814 TCGTTCGGAATTACTTGTCACAAAA 59.706 36.000 0.00 0.00 0.00 2.44
326 330 5.966503 CGTTCGGAATTACTTGTCACAAAAA 59.033 36.000 0.00 0.00 0.00 1.94
327 331 6.635239 CGTTCGGAATTACTTGTCACAAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
328 332 7.357206 CGTTCGGAATTACTTGTCACAAAAATG 60.357 37.037 0.00 0.00 0.00 2.32
329 333 6.442952 TCGGAATTACTTGTCACAAAAATGG 58.557 36.000 0.00 0.00 0.00 3.16
330 334 6.263392 TCGGAATTACTTGTCACAAAAATGGA 59.737 34.615 0.00 0.00 0.00 3.41
331 335 7.040062 TCGGAATTACTTGTCACAAAAATGGAT 60.040 33.333 0.00 0.00 0.00 3.41
332 336 7.062138 CGGAATTACTTGTCACAAAAATGGATG 59.938 37.037 0.00 0.00 0.00 3.51
333 337 7.872483 GGAATTACTTGTCACAAAAATGGATGT 59.128 33.333 0.00 0.00 0.00 3.06
334 338 9.906660 GAATTACTTGTCACAAAAATGGATGTA 57.093 29.630 0.00 0.00 0.00 2.29
337 341 7.765695 ACTTGTCACAAAAATGGATGTATCT 57.234 32.000 0.00 0.00 0.00 1.98
338 342 8.862325 ACTTGTCACAAAAATGGATGTATCTA 57.138 30.769 0.00 0.00 0.00 1.98
339 343 8.730680 ACTTGTCACAAAAATGGATGTATCTAC 58.269 33.333 0.00 0.00 0.00 2.59
340 344 8.628630 TTGTCACAAAAATGGATGTATCTACA 57.371 30.769 0.00 0.00 40.98 2.74
341 345 8.628630 TGTCACAAAAATGGATGTATCTACAA 57.371 30.769 0.00 0.00 39.99 2.41
342 346 8.511321 TGTCACAAAAATGGATGTATCTACAAC 58.489 33.333 0.00 0.00 39.99 3.32
343 347 8.730680 GTCACAAAAATGGATGTATCTACAACT 58.269 33.333 0.00 0.00 39.99 3.16
344 348 9.952030 TCACAAAAATGGATGTATCTACAACTA 57.048 29.630 0.00 0.00 39.99 2.24
353 357 9.740239 TGGATGTATCTACAACTAAAATACGTC 57.260 33.333 0.00 0.00 39.99 4.34
354 358 9.962783 GGATGTATCTACAACTAAAATACGTCT 57.037 33.333 0.00 0.00 39.99 4.18
375 379 9.530633 ACGTCTAGATACATTTATTTCTTGGAC 57.469 33.333 0.00 0.00 0.00 4.02
376 380 8.691727 CGTCTAGATACATTTATTTCTTGGACG 58.308 37.037 0.00 0.00 37.15 4.79
377 381 9.745880 GTCTAGATACATTTATTTCTTGGACGA 57.254 33.333 0.00 0.00 0.00 4.20
378 382 9.967346 TCTAGATACATTTATTTCTTGGACGAG 57.033 33.333 0.00 0.00 0.00 4.18
379 383 9.751542 CTAGATACATTTATTTCTTGGACGAGT 57.248 33.333 0.00 0.00 0.00 4.18
385 389 9.106070 ACATTTATTTCTTGGACGAGTAATACC 57.894 33.333 0.00 0.00 0.00 2.73
386 390 7.760131 TTTATTTCTTGGACGAGTAATACCG 57.240 36.000 0.00 0.94 0.00 4.02
387 391 5.587388 ATTTCTTGGACGAGTAATACCGA 57.413 39.130 7.96 0.00 0.00 4.69
388 392 5.389859 TTTCTTGGACGAGTAATACCGAA 57.610 39.130 7.96 0.00 0.00 4.30
389 393 4.361451 TCTTGGACGAGTAATACCGAAC 57.639 45.455 7.96 2.39 0.00 3.95
390 394 2.830772 TGGACGAGTAATACCGAACG 57.169 50.000 7.96 0.00 0.00 3.95
391 395 1.401552 TGGACGAGTAATACCGAACGG 59.598 52.381 11.83 11.83 42.03 4.44
392 396 1.670811 GGACGAGTAATACCGAACGGA 59.329 52.381 20.14 4.23 38.96 4.69
393 397 2.286654 GGACGAGTAATACCGAACGGAG 60.287 54.545 20.14 0.00 38.96 4.63
394 398 1.672881 ACGAGTAATACCGAACGGAGG 59.327 52.381 20.14 0.00 38.96 4.30
395 399 1.002033 CGAGTAATACCGAACGGAGGG 60.002 57.143 20.14 0.00 38.96 4.30
396 400 2.301346 GAGTAATACCGAACGGAGGGA 58.699 52.381 20.14 2.73 38.96 4.20
397 401 2.292845 GAGTAATACCGAACGGAGGGAG 59.707 54.545 20.14 0.00 38.96 4.30
461 470 6.127810 AAAAAGGTTTTTCGAGGTACTCAC 57.872 37.500 0.00 0.00 45.07 3.51
462 471 5.884232 AAAAAGGTTTTTCGAGGTACTCACT 59.116 36.000 0.00 0.00 45.07 3.41
463 472 6.037940 AAAAAGGTTTTTCGAGGTACTCACTC 59.962 38.462 0.00 0.00 45.07 3.51
464 473 8.806699 AAAAAGGTTTTTCGAGGTACTCACTCC 61.807 40.741 0.00 0.00 45.07 3.85
470 479 3.267908 AGGTACTCACTCCGTCCAG 57.732 57.895 0.00 0.00 0.00 3.86
471 480 0.697079 AGGTACTCACTCCGTCCAGA 59.303 55.000 0.00 0.00 0.00 3.86
472 481 1.075050 AGGTACTCACTCCGTCCAGAA 59.925 52.381 0.00 0.00 0.00 3.02
473 482 1.891150 GGTACTCACTCCGTCCAGAAA 59.109 52.381 0.00 0.00 0.00 2.52
474 483 2.496470 GGTACTCACTCCGTCCAGAAAT 59.504 50.000 0.00 0.00 0.00 2.17
475 484 3.698040 GGTACTCACTCCGTCCAGAAATA 59.302 47.826 0.00 0.00 0.00 1.40
476 485 3.870633 ACTCACTCCGTCCAGAAATAC 57.129 47.619 0.00 0.00 0.00 1.89
477 486 3.432378 ACTCACTCCGTCCAGAAATACT 58.568 45.455 0.00 0.00 0.00 2.12
478 487 3.833070 ACTCACTCCGTCCAGAAATACTT 59.167 43.478 0.00 0.00 0.00 2.24
479 488 4.177026 CTCACTCCGTCCAGAAATACTTG 58.823 47.826 0.00 0.00 0.00 3.16
480 489 3.576982 TCACTCCGTCCAGAAATACTTGT 59.423 43.478 0.00 0.00 0.00 3.16
481 490 3.927142 CACTCCGTCCAGAAATACTTGTC 59.073 47.826 0.00 0.00 0.00 3.18
482 491 3.179830 CTCCGTCCAGAAATACTTGTCG 58.820 50.000 0.00 0.00 0.00 4.35
483 492 2.821378 TCCGTCCAGAAATACTTGTCGA 59.179 45.455 0.00 0.00 0.00 4.20
484 493 3.256383 TCCGTCCAGAAATACTTGTCGAA 59.744 43.478 0.00 0.00 0.00 3.71
485 494 3.612860 CCGTCCAGAAATACTTGTCGAAG 59.387 47.826 0.00 0.00 35.07 3.79
486 495 4.482386 CGTCCAGAAATACTTGTCGAAGA 58.518 43.478 0.00 0.00 32.98 2.87
487 496 4.921515 CGTCCAGAAATACTTGTCGAAGAA 59.078 41.667 0.00 0.00 39.69 2.52
488 497 5.404366 CGTCCAGAAATACTTGTCGAAGAAA 59.596 40.000 0.00 0.00 39.69 2.52
489 498 6.090898 CGTCCAGAAATACTTGTCGAAGAAAT 59.909 38.462 0.00 0.00 39.69 2.17
490 499 7.237173 GTCCAGAAATACTTGTCGAAGAAATG 58.763 38.462 0.00 0.00 39.69 2.32
491 500 6.371548 TCCAGAAATACTTGTCGAAGAAATGG 59.628 38.462 0.00 0.00 39.69 3.16
492 501 6.371548 CCAGAAATACTTGTCGAAGAAATGGA 59.628 38.462 0.00 0.00 39.69 3.41
493 502 7.066284 CCAGAAATACTTGTCGAAGAAATGGAT 59.934 37.037 0.00 0.00 39.69 3.41
494 503 7.907045 CAGAAATACTTGTCGAAGAAATGGATG 59.093 37.037 0.00 0.00 39.69 3.51
495 504 7.824289 AGAAATACTTGTCGAAGAAATGGATGA 59.176 33.333 0.00 0.00 39.69 2.92
496 505 7.921786 AATACTTGTCGAAGAAATGGATGAA 57.078 32.000 0.00 0.00 39.69 2.57
497 506 7.921786 ATACTTGTCGAAGAAATGGATGAAA 57.078 32.000 0.00 0.00 39.69 2.69
498 507 6.633500 ACTTGTCGAAGAAATGGATGAAAA 57.367 33.333 0.00 0.00 39.69 2.29
499 508 7.219484 ACTTGTCGAAGAAATGGATGAAAAT 57.781 32.000 0.00 0.00 39.69 1.82
500 509 7.086376 ACTTGTCGAAGAAATGGATGAAAATG 58.914 34.615 0.00 0.00 39.69 2.32
501 510 5.953183 TGTCGAAGAAATGGATGAAAATGG 58.047 37.500 0.00 0.00 39.69 3.16
502 511 5.105797 TGTCGAAGAAATGGATGAAAATGGG 60.106 40.000 0.00 0.00 39.69 4.00
503 512 5.016173 TCGAAGAAATGGATGAAAATGGGT 58.984 37.500 0.00 0.00 0.00 4.51
504 513 5.104374 CGAAGAAATGGATGAAAATGGGTG 58.896 41.667 0.00 0.00 0.00 4.61
505 514 5.336690 CGAAGAAATGGATGAAAATGGGTGT 60.337 40.000 0.00 0.00 0.00 4.16
506 515 6.127758 CGAAGAAATGGATGAAAATGGGTGTA 60.128 38.462 0.00 0.00 0.00 2.90
507 516 7.416664 CGAAGAAATGGATGAAAATGGGTGTAT 60.417 37.037 0.00 0.00 0.00 2.29
508 517 7.352079 AGAAATGGATGAAAATGGGTGTATC 57.648 36.000 0.00 0.00 0.00 2.24
509 518 7.128077 AGAAATGGATGAAAATGGGTGTATCT 58.872 34.615 0.00 0.00 0.00 1.98
510 519 8.281531 AGAAATGGATGAAAATGGGTGTATCTA 58.718 33.333 0.00 0.00 0.00 1.98
511 520 9.082313 GAAATGGATGAAAATGGGTGTATCTAT 57.918 33.333 0.00 0.00 0.00 1.98
514 523 8.918202 TGGATGAAAATGGGTGTATCTATAAC 57.082 34.615 0.00 0.00 0.00 1.89
515 524 8.723365 TGGATGAAAATGGGTGTATCTATAACT 58.277 33.333 0.00 0.00 0.00 2.24
543 552 9.793252 AATTACGTTTAGATACATACGACAAGT 57.207 29.630 0.00 0.00 37.44 3.16
547 556 9.793252 ACGTTTAGATACATACGACAAGTATTT 57.207 29.630 0.00 0.00 43.12 1.40
553 562 9.017669 AGATACATACGACAAGTATTTTCGAAC 57.982 33.333 0.00 0.00 43.12 3.95
554 563 6.074398 ACATACGACAAGTATTTTCGAACG 57.926 37.500 0.00 0.00 43.12 3.95
555 564 5.061311 ACATACGACAAGTATTTTCGAACGG 59.939 40.000 0.00 0.00 43.12 4.44
556 565 3.641648 ACGACAAGTATTTTCGAACGGA 58.358 40.909 0.00 0.00 36.58 4.69
557 566 3.671928 ACGACAAGTATTTTCGAACGGAG 59.328 43.478 0.00 0.00 36.58 4.63
558 567 3.060363 CGACAAGTATTTTCGAACGGAGG 59.940 47.826 0.00 0.00 34.62 4.30
559 568 3.332034 ACAAGTATTTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
560 569 3.007182 ACAAGTATTTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
638 1204 4.140599 CTGCTCTTCCGGCGCTCT 62.141 66.667 7.64 0.00 0.00 4.09
643 1209 1.455032 TCTTCCGGCGCTCTCCATA 60.455 57.895 7.64 0.00 0.00 2.74
729 1297 4.687215 GACCTGCACAGAGCCGCA 62.687 66.667 0.00 0.00 44.83 5.69
753 1336 2.799371 CAGCGACCGGAGTAGGAC 59.201 66.667 9.46 0.00 34.73 3.85
760 1343 2.838225 CGGAGTAGGACCGCCCAT 60.838 66.667 0.00 0.00 43.74 4.00
762 1345 2.508751 GGAGTAGGACCGCCCATCC 61.509 68.421 0.00 0.00 37.41 3.51
763 1346 2.446036 AGTAGGACCGCCCATCCC 60.446 66.667 0.00 0.00 36.86 3.85
764 1347 2.766651 GTAGGACCGCCCATCCCA 60.767 66.667 0.00 0.00 36.86 4.37
765 1348 2.041430 TAGGACCGCCCATCCCAA 59.959 61.111 0.00 0.00 36.86 4.12
768 1351 4.424711 GACCGCCCATCCCAAGCA 62.425 66.667 0.00 0.00 0.00 3.91
769 1352 4.431131 ACCGCCCATCCCAAGCAG 62.431 66.667 0.00 0.00 0.00 4.24
772 1355 4.802051 GCCCATCCCAAGCAGCGA 62.802 66.667 0.00 0.00 0.00 4.93
773 1356 2.825836 CCCATCCCAAGCAGCGAC 60.826 66.667 0.00 0.00 0.00 5.19
774 1357 2.825836 CCATCCCAAGCAGCGACC 60.826 66.667 0.00 0.00 0.00 4.79
775 1358 2.825836 CATCCCAAGCAGCGACCC 60.826 66.667 0.00 0.00 0.00 4.46
776 1359 4.115199 ATCCCAAGCAGCGACCCC 62.115 66.667 0.00 0.00 0.00 4.95
778 1361 4.785453 CCCAAGCAGCGACCCCTC 62.785 72.222 0.00 0.00 0.00 4.30
779 1362 4.785453 CCAAGCAGCGACCCCTCC 62.785 72.222 0.00 0.00 0.00 4.30
780 1363 4.785453 CAAGCAGCGACCCCTCCC 62.785 72.222 0.00 0.00 0.00 4.30
787 1370 3.900892 CGACCCCTCCCGACGATG 61.901 72.222 0.00 0.00 0.00 3.84
788 1371 3.537874 GACCCCTCCCGACGATGG 61.538 72.222 0.00 0.00 0.00 3.51
789 1372 4.070265 ACCCCTCCCGACGATGGA 62.070 66.667 0.00 0.00 0.00 3.41
791 1374 2.442272 CCCTCCCGACGATGGAGT 60.442 66.667 16.07 0.00 46.64 3.85
792 1375 2.786495 CCCTCCCGACGATGGAGTG 61.786 68.421 16.07 4.31 46.64 3.51
793 1376 1.753078 CCTCCCGACGATGGAGTGA 60.753 63.158 16.07 0.00 46.64 3.41
794 1377 1.109920 CCTCCCGACGATGGAGTGAT 61.110 60.000 16.07 0.00 46.64 3.06
795 1378 0.031314 CTCCCGACGATGGAGTGATG 59.969 60.000 10.93 0.00 43.68 3.07
796 1379 1.068083 CCCGACGATGGAGTGATGG 59.932 63.158 0.00 0.00 0.00 3.51
797 1380 1.391933 CCCGACGATGGAGTGATGGA 61.392 60.000 0.00 0.00 0.00 3.41
798 1381 0.249073 CCGACGATGGAGTGATGGAC 60.249 60.000 0.00 0.00 0.00 4.02
799 1382 0.741326 CGACGATGGAGTGATGGACT 59.259 55.000 0.00 0.00 37.76 3.85
807 1390 1.561643 GAGTGATGGACTCCACAGGA 58.438 55.000 0.00 0.00 44.95 3.86
808 1391 1.205893 GAGTGATGGACTCCACAGGAC 59.794 57.143 0.00 0.00 44.95 3.85
809 1392 0.250513 GTGATGGACTCCACAGGACC 59.749 60.000 0.00 0.00 35.80 4.46
810 1393 0.909610 TGATGGACTCCACAGGACCC 60.910 60.000 0.00 0.00 35.80 4.46
811 1394 0.618968 GATGGACTCCACAGGACCCT 60.619 60.000 0.00 0.00 35.80 4.34
820 1403 2.187946 CAGGACCCTGGTCGATGC 59.812 66.667 10.10 0.00 45.41 3.91
821 1404 2.284625 AGGACCCTGGTCGATGCA 60.285 61.111 10.10 0.00 45.41 3.96
822 1405 2.125106 GGACCCTGGTCGATGCAC 60.125 66.667 10.10 0.00 45.41 4.57
823 1406 2.660064 GGACCCTGGTCGATGCACT 61.660 63.158 10.10 0.00 45.41 4.40
824 1407 1.153549 GACCCTGGTCGATGCACTC 60.154 63.158 0.00 0.00 35.30 3.51
825 1408 2.187946 CCCTGGTCGATGCACTCC 59.812 66.667 0.00 0.00 0.00 3.85
826 1409 2.659063 CCCTGGTCGATGCACTCCA 61.659 63.158 0.00 0.00 0.00 3.86
827 1410 1.448540 CCTGGTCGATGCACTCCAC 60.449 63.158 0.00 0.00 0.00 4.02
828 1411 1.807165 CTGGTCGATGCACTCCACG 60.807 63.158 0.00 0.00 0.00 4.94
829 1412 2.509336 GGTCGATGCACTCCACGG 60.509 66.667 0.00 0.00 0.00 4.94
830 1413 2.509336 GTCGATGCACTCCACGGG 60.509 66.667 0.00 0.00 0.00 5.28
831 1414 3.770040 TCGATGCACTCCACGGGG 61.770 66.667 0.00 0.00 0.00 5.73
832 1415 4.082523 CGATGCACTCCACGGGGT 62.083 66.667 2.12 0.00 34.93 4.95
833 1416 2.125106 GATGCACTCCACGGGGTC 60.125 66.667 2.12 0.00 34.93 4.46
834 1417 4.082523 ATGCACTCCACGGGGTCG 62.083 66.667 2.12 0.00 43.02 4.79
841 1424 4.752879 CCACGGGGTCGCGTCATT 62.753 66.667 5.77 0.00 40.63 2.57
842 1425 2.182284 CACGGGGTCGCGTCATTA 59.818 61.111 5.77 0.00 40.63 1.90
843 1426 2.162754 CACGGGGTCGCGTCATTAC 61.163 63.158 5.77 0.00 40.63 1.89
844 1427 2.584143 CGGGGTCGCGTCATTACC 60.584 66.667 5.77 5.55 0.00 2.85
845 1428 2.580276 GGGGTCGCGTCATTACCA 59.420 61.111 14.93 0.00 34.83 3.25
846 1429 1.078988 GGGGTCGCGTCATTACCAA 60.079 57.895 14.93 0.00 34.83 3.67
847 1430 0.463116 GGGGTCGCGTCATTACCAAT 60.463 55.000 14.93 0.00 34.83 3.16
848 1431 0.655733 GGGTCGCGTCATTACCAATG 59.344 55.000 14.93 0.00 40.28 2.82
849 1432 0.027586 GGTCGCGTCATTACCAATGC 59.972 55.000 5.77 0.00 38.77 3.56
850 1433 0.027586 GTCGCGTCATTACCAATGCC 59.972 55.000 5.77 0.00 38.77 4.40
851 1434 0.391793 TCGCGTCATTACCAATGCCA 60.392 50.000 5.77 0.00 38.77 4.92
852 1435 0.027979 CGCGTCATTACCAATGCCAG 59.972 55.000 0.00 0.00 38.77 4.85
853 1436 0.248621 GCGTCATTACCAATGCCAGC 60.249 55.000 0.00 0.00 38.77 4.85
854 1437 0.027979 CGTCATTACCAATGCCAGCG 59.972 55.000 0.00 0.00 38.77 5.18
855 1438 0.248621 GTCATTACCAATGCCAGCGC 60.249 55.000 0.00 0.00 38.77 5.92
856 1439 1.298563 CATTACCAATGCCAGCGCG 60.299 57.895 0.00 0.00 38.08 6.86
857 1440 2.480610 ATTACCAATGCCAGCGCGG 61.481 57.895 8.83 12.98 38.08 6.46
858 1441 3.910914 TTACCAATGCCAGCGCGGT 62.911 57.895 4.23 4.23 38.08 5.68
861 1444 4.465512 CAATGCCAGCGCGGTGAC 62.466 66.667 37.48 28.23 38.08 3.67
873 1456 4.980805 GGTGACCACGAGCGGCAA 62.981 66.667 1.45 0.00 0.00 4.52
874 1457 3.712881 GTGACCACGAGCGGCAAC 61.713 66.667 1.45 0.00 0.00 4.17
875 1458 4.228567 TGACCACGAGCGGCAACA 62.229 61.111 1.45 0.00 0.00 3.33
876 1459 2.742372 GACCACGAGCGGCAACAT 60.742 61.111 1.45 0.00 0.00 2.71
877 1460 3.027170 GACCACGAGCGGCAACATG 62.027 63.158 1.45 0.00 0.00 3.21
878 1461 3.049674 CCACGAGCGGCAACATGT 61.050 61.111 1.45 0.00 0.00 3.21
879 1462 2.616330 CCACGAGCGGCAACATGTT 61.616 57.895 4.92 4.92 0.00 2.71
880 1463 1.154413 CACGAGCGGCAACATGTTC 60.154 57.895 8.48 3.87 0.00 3.18
881 1464 2.096406 CGAGCGGCAACATGTTCG 59.904 61.111 8.48 11.61 0.00 3.95
882 1465 2.480555 GAGCGGCAACATGTTCGG 59.519 61.111 18.04 13.51 0.00 4.30
883 1466 3.039202 GAGCGGCAACATGTTCGGG 62.039 63.158 18.04 6.02 0.00 5.14
884 1467 4.776647 GCGGCAACATGTTCGGGC 62.777 66.667 18.04 14.32 0.00 6.13
885 1468 4.459331 CGGCAACATGTTCGGGCG 62.459 66.667 23.79 23.79 42.72 6.13
886 1469 4.776647 GGCAACATGTTCGGGCGC 62.777 66.667 8.48 8.70 0.00 6.53
887 1470 4.776647 GCAACATGTTCGGGCGCC 62.777 66.667 21.18 21.18 0.00 6.53
888 1471 3.361158 CAACATGTTCGGGCGCCA 61.361 61.111 30.85 7.48 0.00 5.69
889 1472 3.361977 AACATGTTCGGGCGCCAC 61.362 61.111 30.85 18.97 0.00 5.01
914 1497 1.971357 TGTCTTCTCAAGTGGGTCTCC 59.029 52.381 0.00 0.00 0.00 3.71
933 1516 2.046217 GTTCCTGTTCGGCCTCCC 60.046 66.667 0.00 0.00 0.00 4.30
961 1548 3.432378 ACTCGGATTACAAGTGAGGTCT 58.568 45.455 0.00 0.00 0.00 3.85
985 1575 0.462789 TTCCTATTCGGTTCGGCCTC 59.537 55.000 0.00 0.00 34.25 4.70
998 1588 2.112297 GCCTCGGTTGGTTCACCA 59.888 61.111 0.00 0.00 45.94 4.17
1012 1602 2.309528 TCACCAAGCGCCTATAAGTG 57.690 50.000 2.29 3.91 0.00 3.16
1015 1605 1.339631 ACCAAGCGCCTATAAGTGCAA 60.340 47.619 2.29 0.00 45.81 4.08
1061 1657 1.957177 TGCCTCGTACCAGATCAGATC 59.043 52.381 1.64 1.64 0.00 2.75
1062 1658 1.271102 GCCTCGTACCAGATCAGATCC 59.729 57.143 6.80 0.00 0.00 3.36
1063 1659 2.587522 CCTCGTACCAGATCAGATCCA 58.412 52.381 6.80 0.00 0.00 3.41
1065 1661 3.005261 CCTCGTACCAGATCAGATCCAAG 59.995 52.174 6.80 0.00 0.00 3.61
1066 1662 2.362397 TCGTACCAGATCAGATCCAAGC 59.638 50.000 6.80 0.00 0.00 4.01
1068 1664 1.588239 ACCAGATCAGATCCAAGCCA 58.412 50.000 6.80 0.00 0.00 4.75
1072 1668 3.380637 CCAGATCAGATCCAAGCCAAAAG 59.619 47.826 6.80 0.00 0.00 2.27
1073 1669 4.267536 CAGATCAGATCCAAGCCAAAAGA 58.732 43.478 6.80 0.00 0.00 2.52
1075 1671 5.184479 CAGATCAGATCCAAGCCAAAAGAAA 59.816 40.000 6.80 0.00 0.00 2.52
1076 1672 5.418209 AGATCAGATCCAAGCCAAAAGAAAG 59.582 40.000 6.80 0.00 0.00 2.62
1078 1674 4.895297 TCAGATCCAAGCCAAAAGAAAGTT 59.105 37.500 0.00 0.00 0.00 2.66
1079 1675 6.068010 TCAGATCCAAGCCAAAAGAAAGTTA 58.932 36.000 0.00 0.00 0.00 2.24
1080 1676 6.207417 TCAGATCCAAGCCAAAAGAAAGTTAG 59.793 38.462 0.00 0.00 0.00 2.34
1238 1873 2.814919 CGGTCTGTCTATACCAGCCTAG 59.185 54.545 0.00 0.00 35.35 3.02
1250 1885 2.587473 GCCTAGGCAGCGAGCTTC 60.587 66.667 29.33 0.00 44.79 3.86
1294 1929 0.827368 CTTGCCTCCTCTACACCTCC 59.173 60.000 0.00 0.00 0.00 4.30
1303 1938 0.738975 TCTACACCTCCGAATCTGCG 59.261 55.000 0.00 0.00 0.00 5.18
1456 2091 1.544691 TCCGAGCTACACCTTCTCAAC 59.455 52.381 0.00 0.00 0.00 3.18
1683 2318 0.761323 TTTCCTGACCCGTCCACAGA 60.761 55.000 0.00 0.00 34.07 3.41
1759 2394 3.181478 GGGTAGGAGATTGTAAGTGGACG 60.181 52.174 0.00 0.00 0.00 4.79
1789 2424 4.040461 CCGGTGGGTTATGACTATCAAGAT 59.960 45.833 0.00 0.00 0.00 2.40
1837 2472 1.151668 CCTTCACGAGCTTTGGACAG 58.848 55.000 0.00 0.00 0.00 3.51
2201 2854 4.122046 TGATGATACATGTGCTTCGGAAG 58.878 43.478 13.39 13.39 0.00 3.46
2231 2884 1.202770 GCTGCCGGGATATAGGTGTTT 60.203 52.381 2.18 0.00 0.00 2.83
2269 2922 6.609616 ACAACAAAAGGGAAGAAATTCTACCA 59.390 34.615 15.85 0.00 0.00 3.25
2346 3000 5.712917 GGATGAACTGGGGTTGTACAAATAA 59.287 40.000 10.51 0.00 35.58 1.40
2383 3039 1.040646 TGTAGCCCGCTTCTAGGATG 58.959 55.000 0.00 0.00 0.00 3.51
2466 3122 3.350219 ACAATAACGGAGGCATGTTCT 57.650 42.857 0.00 0.00 0.00 3.01
2485 3141 5.181245 TGTTCTGTTTATCTGGCTTGCTAAC 59.819 40.000 0.00 0.00 0.00 2.34
2523 3179 8.797266 AAACGTCTTCCTTTTTATGAATTGTC 57.203 30.769 0.00 0.00 0.00 3.18
2604 3272 4.050934 ACGTCTCGTGCGGCATGA 62.051 61.111 22.48 22.48 39.18 3.07
2871 3548 1.536676 CCACCTGAAACCACACCCT 59.463 57.895 0.00 0.00 0.00 4.34
2968 3650 5.769162 GGTAATCTCCCGATCTAACTACTGT 59.231 44.000 0.00 0.00 0.00 3.55
3099 3833 5.420725 AGATCTGCCATGTACTGTGTTAA 57.579 39.130 0.00 0.00 0.00 2.01
3160 3894 5.966853 TGGTAAATGGATGGATGTGTAGA 57.033 39.130 0.00 0.00 0.00 2.59
3270 4006 4.245660 CACCTATCATTGTCGTCAACTGT 58.754 43.478 0.00 0.00 36.33 3.55
3338 4075 2.184385 TCGAATCGAACGGTTAGCTC 57.816 50.000 1.57 0.00 31.06 4.09
3411 4150 2.710096 ATGCTGGTTACCTACGCATT 57.290 45.000 16.26 5.73 38.04 3.56
3430 4169 5.104374 GCATTGGAAATGTGATAACACTGG 58.896 41.667 4.65 0.00 46.07 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 6.256686 TCGAGTCGAGCTTTAGTTTAAGATC 58.743 40.000 12.09 0.00 37.23 2.75
16 17 6.192234 TCGAGTCGAGCTTTAGTTTAAGAT 57.808 37.500 12.09 0.00 0.00 2.40
17 18 5.618056 TCGAGTCGAGCTTTAGTTTAAGA 57.382 39.130 12.09 0.00 0.00 2.10
18 19 6.485253 GATCGAGTCGAGCTTTAGTTTAAG 57.515 41.667 22.81 0.00 39.28 1.85
33 34 0.931005 GGAAATGGCACGATCGAGTC 59.069 55.000 24.34 17.02 0.00 3.36
34 35 0.462047 GGGAAATGGCACGATCGAGT 60.462 55.000 24.34 0.00 0.00 4.18
35 36 1.160329 GGGGAAATGGCACGATCGAG 61.160 60.000 24.34 16.03 0.00 4.04
36 37 1.153249 GGGGAAATGGCACGATCGA 60.153 57.895 24.34 0.00 0.00 3.59
37 38 0.748005 AAGGGGAAATGGCACGATCG 60.748 55.000 14.88 14.88 0.00 3.69
38 39 1.025041 GAAGGGGAAATGGCACGATC 58.975 55.000 0.00 0.00 0.00 3.69
39 40 0.748005 CGAAGGGGAAATGGCACGAT 60.748 55.000 0.00 0.00 0.00 3.73
40 41 1.376683 CGAAGGGGAAATGGCACGA 60.377 57.895 0.00 0.00 0.00 4.35
41 42 0.958382 TTCGAAGGGGAAATGGCACG 60.958 55.000 0.00 0.00 0.00 5.34
106 107 6.650427 TGTATATGTCATGTCTCCCACTAC 57.350 41.667 0.00 0.00 0.00 2.73
128 129 9.196552 GAGAGGTTTTCTATGGAAATTTTGTTG 57.803 33.333 4.96 0.00 40.57 3.33
139 140 4.162040 AGGCATGAGAGGTTTTCTATGG 57.838 45.455 0.00 0.00 35.87 2.74
140 141 5.067023 GGAAAGGCATGAGAGGTTTTCTATG 59.933 44.000 0.00 0.00 35.87 2.23
150 151 1.005215 ACAAGGGGAAAGGCATGAGAG 59.995 52.381 0.00 0.00 0.00 3.20
201 204 2.378547 AGTGGCAAAAGGGAAGGACATA 59.621 45.455 0.00 0.00 0.00 2.29
248 251 3.494398 GGACAGAGGTTTGTCTTGTAGCA 60.494 47.826 6.17 0.00 45.32 3.49
291 295 4.482952 AATTCCGAACGAAGGGAGTAAT 57.517 40.909 0.00 0.00 32.78 1.89
293 297 4.019174 AGTAATTCCGAACGAAGGGAGTA 58.981 43.478 0.00 0.00 32.78 2.59
294 298 2.830321 AGTAATTCCGAACGAAGGGAGT 59.170 45.455 0.00 0.00 32.78 3.85
295 299 3.521947 AGTAATTCCGAACGAAGGGAG 57.478 47.619 0.00 0.00 32.78 4.30
296 300 3.007182 ACAAGTAATTCCGAACGAAGGGA 59.993 43.478 0.00 0.00 32.78 4.20
297 301 3.332034 ACAAGTAATTCCGAACGAAGGG 58.668 45.455 0.00 0.00 32.78 3.95
298 302 3.991773 TGACAAGTAATTCCGAACGAAGG 59.008 43.478 0.00 0.00 32.78 3.46
299 303 4.446385 TGTGACAAGTAATTCCGAACGAAG 59.554 41.667 0.00 0.00 32.78 3.79
300 304 4.370049 TGTGACAAGTAATTCCGAACGAA 58.630 39.130 0.00 0.00 34.14 3.85
301 305 3.979948 TGTGACAAGTAATTCCGAACGA 58.020 40.909 0.00 0.00 0.00 3.85
302 306 4.718858 TTGTGACAAGTAATTCCGAACG 57.281 40.909 0.00 0.00 0.00 3.95
303 307 7.096230 CCATTTTTGTGACAAGTAATTCCGAAC 60.096 37.037 0.00 0.00 0.00 3.95
304 308 6.920758 CCATTTTTGTGACAAGTAATTCCGAA 59.079 34.615 0.00 0.00 0.00 4.30
305 309 6.263392 TCCATTTTTGTGACAAGTAATTCCGA 59.737 34.615 0.00 0.00 0.00 4.55
306 310 6.442952 TCCATTTTTGTGACAAGTAATTCCG 58.557 36.000 0.00 0.00 0.00 4.30
307 311 7.872483 ACATCCATTTTTGTGACAAGTAATTCC 59.128 33.333 0.00 0.00 0.00 3.01
308 312 8.816640 ACATCCATTTTTGTGACAAGTAATTC 57.183 30.769 0.00 0.00 0.00 2.17
311 315 9.295825 AGATACATCCATTTTTGTGACAAGTAA 57.704 29.630 0.00 0.00 0.00 2.24
312 316 8.862325 AGATACATCCATTTTTGTGACAAGTA 57.138 30.769 0.00 0.00 0.00 2.24
313 317 7.765695 AGATACATCCATTTTTGTGACAAGT 57.234 32.000 0.00 0.00 0.00 3.16
314 318 8.729756 TGTAGATACATCCATTTTTGTGACAAG 58.270 33.333 0.00 0.00 0.00 3.16
315 319 8.628630 TGTAGATACATCCATTTTTGTGACAA 57.371 30.769 0.00 0.00 0.00 3.18
316 320 8.511321 GTTGTAGATACATCCATTTTTGTGACA 58.489 33.333 0.00 0.00 35.89 3.58
317 321 8.730680 AGTTGTAGATACATCCATTTTTGTGAC 58.269 33.333 0.00 0.00 35.89 3.67
318 322 8.862325 AGTTGTAGATACATCCATTTTTGTGA 57.138 30.769 0.00 0.00 35.89 3.58
327 331 9.740239 GACGTATTTTAGTTGTAGATACATCCA 57.260 33.333 0.00 0.00 35.89 3.41
328 332 9.962783 AGACGTATTTTAGTTGTAGATACATCC 57.037 33.333 0.00 0.00 35.89 3.51
349 353 9.530633 GTCCAAGAAATAAATGTATCTAGACGT 57.469 33.333 0.00 0.00 0.00 4.34
350 354 8.691727 CGTCCAAGAAATAAATGTATCTAGACG 58.308 37.037 0.00 10.60 39.85 4.18
351 355 9.745880 TCGTCCAAGAAATAAATGTATCTAGAC 57.254 33.333 0.00 0.00 0.00 2.59
352 356 9.967346 CTCGTCCAAGAAATAAATGTATCTAGA 57.033 33.333 0.00 0.00 0.00 2.43
353 357 9.751542 ACTCGTCCAAGAAATAAATGTATCTAG 57.248 33.333 0.00 0.00 0.00 2.43
359 363 9.106070 GGTATTACTCGTCCAAGAAATAAATGT 57.894 33.333 0.00 0.00 0.00 2.71
360 364 8.273557 CGGTATTACTCGTCCAAGAAATAAATG 58.726 37.037 0.00 0.00 0.00 2.32
361 365 8.199449 TCGGTATTACTCGTCCAAGAAATAAAT 58.801 33.333 0.00 0.00 0.00 1.40
362 366 7.546358 TCGGTATTACTCGTCCAAGAAATAAA 58.454 34.615 0.00 0.00 0.00 1.40
363 367 7.099266 TCGGTATTACTCGTCCAAGAAATAA 57.901 36.000 0.00 0.00 0.00 1.40
364 368 6.698008 TCGGTATTACTCGTCCAAGAAATA 57.302 37.500 0.00 0.00 0.00 1.40
365 369 5.587388 TCGGTATTACTCGTCCAAGAAAT 57.413 39.130 0.00 0.00 0.00 2.17
366 370 5.163513 GTTCGGTATTACTCGTCCAAGAAA 58.836 41.667 0.00 0.00 0.00 2.52
367 371 4.672542 CGTTCGGTATTACTCGTCCAAGAA 60.673 45.833 0.00 0.00 0.00 2.52
368 372 3.181507 CGTTCGGTATTACTCGTCCAAGA 60.182 47.826 0.00 0.00 0.00 3.02
369 373 3.103738 CGTTCGGTATTACTCGTCCAAG 58.896 50.000 0.00 0.00 0.00 3.61
370 374 2.159393 CCGTTCGGTATTACTCGTCCAA 60.159 50.000 2.82 0.00 0.00 3.53
371 375 1.401552 CCGTTCGGTATTACTCGTCCA 59.598 52.381 2.82 0.00 0.00 4.02
372 376 1.670811 TCCGTTCGGTATTACTCGTCC 59.329 52.381 11.04 0.00 0.00 4.79
373 377 2.286654 CCTCCGTTCGGTATTACTCGTC 60.287 54.545 11.04 0.00 0.00 4.20
374 378 1.672881 CCTCCGTTCGGTATTACTCGT 59.327 52.381 11.04 0.00 0.00 4.18
375 379 1.002033 CCCTCCGTTCGGTATTACTCG 60.002 57.143 11.04 0.00 0.00 4.18
376 380 2.292845 CTCCCTCCGTTCGGTATTACTC 59.707 54.545 11.04 0.00 0.00 2.59
377 381 2.305009 CTCCCTCCGTTCGGTATTACT 58.695 52.381 11.04 0.00 0.00 2.24
378 382 2.027385 ACTCCCTCCGTTCGGTATTAC 58.973 52.381 11.04 0.00 0.00 1.89
379 383 2.442236 ACTCCCTCCGTTCGGTATTA 57.558 50.000 11.04 0.00 0.00 0.98
380 384 2.442236 TACTCCCTCCGTTCGGTATT 57.558 50.000 11.04 0.00 0.00 1.89
381 385 2.671896 ATACTCCCTCCGTTCGGTAT 57.328 50.000 11.04 0.00 0.00 2.73
382 386 3.136443 TCTTATACTCCCTCCGTTCGGTA 59.864 47.826 11.04 0.00 0.00 4.02
383 387 2.092212 TCTTATACTCCCTCCGTTCGGT 60.092 50.000 11.04 0.00 0.00 4.69
384 388 2.292845 GTCTTATACTCCCTCCGTTCGG 59.707 54.545 4.74 4.74 0.00 4.30
385 389 3.212685 AGTCTTATACTCCCTCCGTTCG 58.787 50.000 0.00 0.00 30.33 3.95
386 390 4.213059 CGTAGTCTTATACTCCCTCCGTTC 59.787 50.000 0.00 0.00 39.80 3.95
387 391 4.133078 CGTAGTCTTATACTCCCTCCGTT 58.867 47.826 0.00 0.00 39.80 4.44
388 392 3.495806 CCGTAGTCTTATACTCCCTCCGT 60.496 52.174 0.00 0.00 39.80 4.69
389 393 3.072944 CCGTAGTCTTATACTCCCTCCG 58.927 54.545 0.00 0.00 39.80 4.63
390 394 3.819902 CACCGTAGTCTTATACTCCCTCC 59.180 52.174 0.00 0.00 39.80 4.30
391 395 4.712476 TCACCGTAGTCTTATACTCCCTC 58.288 47.826 0.00 0.00 39.80 4.30
392 396 4.785346 TCACCGTAGTCTTATACTCCCT 57.215 45.455 0.00 0.00 39.80 4.20
393 397 5.221204 CCTTTCACCGTAGTCTTATACTCCC 60.221 48.000 0.00 0.00 39.80 4.30
394 398 5.221204 CCCTTTCACCGTAGTCTTATACTCC 60.221 48.000 0.00 0.00 39.80 3.85
395 399 5.359292 ACCCTTTCACCGTAGTCTTATACTC 59.641 44.000 0.00 0.00 39.80 2.59
396 400 5.267587 ACCCTTTCACCGTAGTCTTATACT 58.732 41.667 0.00 0.00 42.62 2.12
397 401 5.588958 ACCCTTTCACCGTAGTCTTATAC 57.411 43.478 0.00 0.00 0.00 1.47
461 470 3.119602 TCGACAAGTATTTCTGGACGGAG 60.120 47.826 0.00 0.00 36.30 4.63
462 471 2.821378 TCGACAAGTATTTCTGGACGGA 59.179 45.455 0.00 0.00 36.30 4.69
463 472 3.226346 TCGACAAGTATTTCTGGACGG 57.774 47.619 0.00 0.00 36.30 4.79
464 473 4.482386 TCTTCGACAAGTATTTCTGGACG 58.518 43.478 0.00 0.00 36.80 4.79
465 474 6.780706 TTTCTTCGACAAGTATTTCTGGAC 57.219 37.500 0.00 0.00 0.00 4.02
466 475 6.371548 CCATTTCTTCGACAAGTATTTCTGGA 59.628 38.462 0.00 0.00 0.00 3.86
467 476 6.371548 TCCATTTCTTCGACAAGTATTTCTGG 59.628 38.462 0.00 0.00 0.00 3.86
468 477 7.364522 TCCATTTCTTCGACAAGTATTTCTG 57.635 36.000 0.00 0.00 0.00 3.02
469 478 7.824289 TCATCCATTTCTTCGACAAGTATTTCT 59.176 33.333 0.00 0.00 0.00 2.52
470 479 7.974675 TCATCCATTTCTTCGACAAGTATTTC 58.025 34.615 0.00 0.00 0.00 2.17
471 480 7.921786 TCATCCATTTCTTCGACAAGTATTT 57.078 32.000 0.00 0.00 0.00 1.40
472 481 7.921786 TTCATCCATTTCTTCGACAAGTATT 57.078 32.000 0.00 0.00 0.00 1.89
473 482 7.921786 TTTCATCCATTTCTTCGACAAGTAT 57.078 32.000 0.00 0.00 0.00 2.12
474 483 7.737972 TTTTCATCCATTTCTTCGACAAGTA 57.262 32.000 0.00 0.00 0.00 2.24
475 484 6.633500 TTTTCATCCATTTCTTCGACAAGT 57.367 33.333 0.00 0.00 0.00 3.16
476 485 6.529125 CCATTTTCATCCATTTCTTCGACAAG 59.471 38.462 0.00 0.00 0.00 3.16
477 486 6.389091 CCATTTTCATCCATTTCTTCGACAA 58.611 36.000 0.00 0.00 0.00 3.18
478 487 5.105797 CCCATTTTCATCCATTTCTTCGACA 60.106 40.000 0.00 0.00 0.00 4.35
479 488 5.105756 ACCCATTTTCATCCATTTCTTCGAC 60.106 40.000 0.00 0.00 0.00 4.20
480 489 5.016173 ACCCATTTTCATCCATTTCTTCGA 58.984 37.500 0.00 0.00 0.00 3.71
481 490 5.104374 CACCCATTTTCATCCATTTCTTCG 58.896 41.667 0.00 0.00 0.00 3.79
482 491 6.041423 ACACCCATTTTCATCCATTTCTTC 57.959 37.500 0.00 0.00 0.00 2.87
483 492 7.620888 AGATACACCCATTTTCATCCATTTCTT 59.379 33.333 0.00 0.00 0.00 2.52
484 493 7.128077 AGATACACCCATTTTCATCCATTTCT 58.872 34.615 0.00 0.00 0.00 2.52
485 494 7.352079 AGATACACCCATTTTCATCCATTTC 57.648 36.000 0.00 0.00 0.00 2.17
488 497 9.520515 GTTATAGATACACCCATTTTCATCCAT 57.479 33.333 0.00 0.00 0.00 3.41
489 498 8.723365 AGTTATAGATACACCCATTTTCATCCA 58.277 33.333 0.00 0.00 0.00 3.41
517 526 9.793252 ACTTGTCGTATGTATCTAAACGTAATT 57.207 29.630 0.00 0.00 36.73 1.40
521 530 9.793252 AAATACTTGTCGTATGTATCTAAACGT 57.207 29.630 0.00 0.00 38.78 3.99
527 536 9.017669 GTTCGAAAATACTTGTCGTATGTATCT 57.982 33.333 0.00 0.00 38.78 1.98
528 537 7.989405 CGTTCGAAAATACTTGTCGTATGTATC 59.011 37.037 0.00 0.00 38.78 2.24
529 538 7.043854 CCGTTCGAAAATACTTGTCGTATGTAT 60.044 37.037 0.00 0.00 38.78 2.29
530 539 6.251163 CCGTTCGAAAATACTTGTCGTATGTA 59.749 38.462 0.00 0.00 38.78 2.29
531 540 5.061311 CCGTTCGAAAATACTTGTCGTATGT 59.939 40.000 0.00 0.00 38.78 2.29
532 541 5.286797 TCCGTTCGAAAATACTTGTCGTATG 59.713 40.000 0.00 0.00 38.78 2.39
533 542 5.401550 TCCGTTCGAAAATACTTGTCGTAT 58.598 37.500 0.00 0.00 40.51 3.06
534 543 4.793071 TCCGTTCGAAAATACTTGTCGTA 58.207 39.130 0.00 0.00 36.21 3.43
535 544 3.641648 TCCGTTCGAAAATACTTGTCGT 58.358 40.909 0.00 0.00 36.21 4.34
536 545 3.060363 CCTCCGTTCGAAAATACTTGTCG 59.940 47.826 0.00 0.00 36.12 4.35
537 546 3.370061 CCCTCCGTTCGAAAATACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
538 547 3.007182 TCCCTCCGTTCGAAAATACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
539 548 3.592059 TCCCTCCGTTCGAAAATACTTG 58.408 45.455 0.00 0.00 0.00 3.16
540 549 3.260128 ACTCCCTCCGTTCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
541 550 2.830321 ACTCCCTCCGTTCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
542 551 3.242549 ACTCCCTCCGTTCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
543 552 5.603170 AATACTCCCTCCGTTCGAAAATA 57.397 39.130 0.00 0.00 0.00 1.40
544 553 4.482952 AATACTCCCTCCGTTCGAAAAT 57.517 40.909 0.00 0.00 0.00 1.82
545 554 3.967332 AATACTCCCTCCGTTCGAAAA 57.033 42.857 0.00 0.00 0.00 2.29
546 555 3.967332 AAATACTCCCTCCGTTCGAAA 57.033 42.857 0.00 0.00 0.00 3.46
547 556 3.967332 AAAATACTCCCTCCGTTCGAA 57.033 42.857 0.00 0.00 0.00 3.71
548 557 3.967332 AAAAATACTCCCTCCGTTCGA 57.033 42.857 0.00 0.00 0.00 3.71
600 609 2.899044 CGCCGGCGACCTTGAAAAA 61.899 57.895 44.86 0.00 42.83 1.94
638 1204 2.111384 GGTGAGCAAGGAGAGTATGGA 58.889 52.381 0.00 0.00 0.00 3.41
643 1209 1.821061 CGTGGGTGAGCAAGGAGAGT 61.821 60.000 0.00 0.00 0.00 3.24
729 1297 3.362399 CTCCGGTCGCTGCACTCAT 62.362 63.158 0.00 0.00 0.00 2.90
744 1327 2.508751 GGATGGGCGGTCCTACTCC 61.509 68.421 0.00 0.00 36.20 3.85
756 1339 2.825836 GTCGCTGCTTGGGATGGG 60.826 66.667 0.00 0.00 39.82 4.00
762 1345 4.785453 GGAGGGGTCGCTGCTTGG 62.785 72.222 0.00 0.00 0.00 3.61
763 1346 4.785453 GGGAGGGGTCGCTGCTTG 62.785 72.222 6.52 0.00 0.00 4.01
770 1353 3.900892 CATCGTCGGGAGGGGTCG 61.901 72.222 0.00 0.00 0.00 4.79
771 1354 3.537874 CCATCGTCGGGAGGGGTC 61.538 72.222 0.00 0.00 42.95 4.46
772 1355 4.070265 TCCATCGTCGGGAGGGGT 62.070 66.667 7.96 0.00 46.66 4.95
773 1356 3.227276 CTCCATCGTCGGGAGGGG 61.227 72.222 9.10 0.00 46.66 4.79
777 1360 1.391933 CCATCACTCCATCGTCGGGA 61.392 60.000 0.00 0.00 0.00 5.14
778 1361 1.068083 CCATCACTCCATCGTCGGG 59.932 63.158 0.00 0.00 0.00 5.14
779 1362 0.249073 GTCCATCACTCCATCGTCGG 60.249 60.000 0.00 0.00 0.00 4.79
780 1363 0.741326 AGTCCATCACTCCATCGTCG 59.259 55.000 0.00 0.00 0.00 5.12
781 1364 2.500509 GAGTCCATCACTCCATCGTC 57.499 55.000 0.00 0.00 45.47 4.20
789 1372 1.270907 GTCCTGTGGAGTCCATCACT 58.729 55.000 16.67 0.00 38.45 3.41
790 1373 0.250513 GGTCCTGTGGAGTCCATCAC 59.749 60.000 16.67 9.40 35.28 3.06
791 1374 0.909610 GGGTCCTGTGGAGTCCATCA 60.910 60.000 16.67 13.88 35.28 3.07
792 1375 0.618968 AGGGTCCTGTGGAGTCCATC 60.619 60.000 16.67 9.82 35.28 3.51
793 1376 0.911525 CAGGGTCCTGTGGAGTCCAT 60.912 60.000 16.67 0.00 39.10 3.41
794 1377 1.536418 CAGGGTCCTGTGGAGTCCA 60.536 63.158 8.12 8.12 39.10 4.02
795 1378 2.294078 CCAGGGTCCTGTGGAGTCC 61.294 68.421 15.09 0.73 42.15 3.85
796 1379 1.536662 ACCAGGGTCCTGTGGAGTC 60.537 63.158 15.09 0.00 42.15 3.36
797 1380 1.536662 GACCAGGGTCCTGTGGAGT 60.537 63.158 15.09 6.34 42.15 3.85
798 1381 2.650116 CGACCAGGGTCCTGTGGAG 61.650 68.421 15.09 3.34 42.15 3.86
799 1382 2.455960 ATCGACCAGGGTCCTGTGGA 62.456 60.000 15.09 9.54 42.15 4.02
800 1383 1.990060 ATCGACCAGGGTCCTGTGG 60.990 63.158 15.09 11.80 42.15 4.17
801 1384 1.219124 CATCGACCAGGGTCCTGTG 59.781 63.158 15.09 9.42 42.15 3.66
802 1385 2.660064 GCATCGACCAGGGTCCTGT 61.660 63.158 15.09 4.39 42.15 4.00
803 1386 2.187946 GCATCGACCAGGGTCCTG 59.812 66.667 12.66 9.94 41.76 3.86
804 1387 2.284625 TGCATCGACCAGGGTCCT 60.285 61.111 12.66 0.00 41.76 3.85
805 1388 2.125106 GTGCATCGACCAGGGTCC 60.125 66.667 12.66 0.00 41.76 4.46
806 1389 1.153549 GAGTGCATCGACCAGGGTC 60.154 63.158 8.44 8.44 41.40 4.46
807 1390 2.660064 GGAGTGCATCGACCAGGGT 61.660 63.158 0.00 0.00 0.00 4.34
808 1391 2.187946 GGAGTGCATCGACCAGGG 59.812 66.667 0.00 0.00 0.00 4.45
809 1392 1.448540 GTGGAGTGCATCGACCAGG 60.449 63.158 0.00 0.00 30.85 4.45
810 1393 1.807165 CGTGGAGTGCATCGACCAG 60.807 63.158 0.00 0.00 33.34 4.00
811 1394 2.261361 CGTGGAGTGCATCGACCA 59.739 61.111 0.00 0.00 33.34 4.02
812 1395 2.509336 CCGTGGAGTGCATCGACC 60.509 66.667 7.88 0.00 33.34 4.79
813 1396 2.509336 CCCGTGGAGTGCATCGAC 60.509 66.667 7.88 0.00 33.57 4.20
814 1397 3.770040 CCCCGTGGAGTGCATCGA 61.770 66.667 7.88 0.00 0.00 3.59
815 1398 4.082523 ACCCCGTGGAGTGCATCG 62.083 66.667 0.00 0.00 34.81 3.84
816 1399 2.125106 GACCCCGTGGAGTGCATC 60.125 66.667 0.00 0.00 34.81 3.91
817 1400 4.082523 CGACCCCGTGGAGTGCAT 62.083 66.667 0.00 0.00 34.81 3.96
826 1409 2.182537 GTAATGACGCGACCCCGT 59.817 61.111 15.93 0.00 45.30 5.28
827 1410 2.584143 GGTAATGACGCGACCCCG 60.584 66.667 15.93 0.00 39.16 5.73
828 1411 0.463116 ATTGGTAATGACGCGACCCC 60.463 55.000 15.93 4.88 31.80 4.95
829 1412 0.655733 CATTGGTAATGACGCGACCC 59.344 55.000 15.93 3.53 41.46 4.46
830 1413 0.027586 GCATTGGTAATGACGCGACC 59.972 55.000 15.93 10.55 41.46 4.79
831 1414 0.027586 GGCATTGGTAATGACGCGAC 59.972 55.000 15.93 7.62 41.46 5.19
832 1415 2.389386 GGCATTGGTAATGACGCGA 58.611 52.632 15.93 0.00 41.46 5.87
833 1416 4.996113 GGCATTGGTAATGACGCG 57.004 55.556 3.53 3.53 41.46 6.01
837 1420 1.713937 CGCGCTGGCATTGGTAATGA 61.714 55.000 5.56 0.00 41.46 2.57
838 1421 1.298563 CGCGCTGGCATTGGTAATG 60.299 57.895 5.56 0.00 41.85 1.90
839 1422 2.480610 CCGCGCTGGCATTGGTAAT 61.481 57.895 5.56 0.00 39.92 1.89
840 1423 3.130819 CCGCGCTGGCATTGGTAA 61.131 61.111 5.56 0.00 39.92 2.85
841 1424 4.402528 ACCGCGCTGGCATTGGTA 62.403 61.111 16.48 0.00 43.94 3.25
844 1427 4.465512 GTCACCGCGCTGGCATTG 62.466 66.667 16.48 8.99 43.94 2.82
856 1439 4.980805 TTGCCGCTCGTGGTCACC 62.981 66.667 0.00 0.00 0.00 4.02
857 1440 3.712881 GTTGCCGCTCGTGGTCAC 61.713 66.667 0.00 0.00 0.00 3.67
858 1441 3.529341 ATGTTGCCGCTCGTGGTCA 62.529 57.895 0.00 0.00 0.00 4.02
859 1442 2.742372 ATGTTGCCGCTCGTGGTC 60.742 61.111 0.00 0.00 0.00 4.02
860 1443 3.049674 CATGTTGCCGCTCGTGGT 61.050 61.111 0.00 0.00 0.00 4.16
861 1444 2.513065 GAACATGTTGCCGCTCGTGG 62.513 60.000 17.58 0.00 0.00 4.94
862 1445 1.154413 GAACATGTTGCCGCTCGTG 60.154 57.895 17.58 0.00 0.00 4.35
863 1446 2.667318 CGAACATGTTGCCGCTCGT 61.667 57.895 17.58 0.00 0.00 4.18
864 1447 2.096406 CGAACATGTTGCCGCTCG 59.904 61.111 17.58 8.47 0.00 5.03
865 1448 2.480555 CCGAACATGTTGCCGCTC 59.519 61.111 17.58 0.00 0.00 5.03
866 1449 3.055719 CCCGAACATGTTGCCGCT 61.056 61.111 17.58 0.00 0.00 5.52
867 1450 4.776647 GCCCGAACATGTTGCCGC 62.777 66.667 17.58 10.04 0.00 6.53
868 1451 4.459331 CGCCCGAACATGTTGCCG 62.459 66.667 17.58 14.03 0.00 5.69
869 1452 4.776647 GCGCCCGAACATGTTGCC 62.777 66.667 17.58 1.01 0.00 4.52
870 1453 4.776647 GGCGCCCGAACATGTTGC 62.777 66.667 18.11 12.45 0.00 4.17
871 1454 3.361158 TGGCGCCCGAACATGTTG 61.361 61.111 26.77 8.34 0.00 3.33
872 1455 3.361977 GTGGCGCCCGAACATGTT 61.362 61.111 26.77 11.78 0.00 2.71
885 1468 0.250467 TTGAGAAGACAGCTGGTGGC 60.250 55.000 19.93 8.40 42.19 5.01
886 1469 1.071385 ACTTGAGAAGACAGCTGGTGG 59.929 52.381 19.93 0.00 0.00 4.61
887 1470 2.141517 CACTTGAGAAGACAGCTGGTG 58.858 52.381 19.93 9.02 0.00 4.17
888 1471 1.071385 CCACTTGAGAAGACAGCTGGT 59.929 52.381 19.93 3.31 0.00 4.00
889 1472 1.610102 CCCACTTGAGAAGACAGCTGG 60.610 57.143 19.93 0.00 0.00 4.85
890 1473 1.071385 ACCCACTTGAGAAGACAGCTG 59.929 52.381 13.48 13.48 0.00 4.24
891 1474 1.346068 GACCCACTTGAGAAGACAGCT 59.654 52.381 0.00 0.00 0.00 4.24
892 1475 1.346068 AGACCCACTTGAGAAGACAGC 59.654 52.381 0.00 0.00 0.00 4.40
893 1476 2.028567 GGAGACCCACTTGAGAAGACAG 60.029 54.545 0.00 0.00 0.00 3.51
894 1477 1.971357 GGAGACCCACTTGAGAAGACA 59.029 52.381 0.00 0.00 0.00 3.41
895 1478 2.753055 GGAGACCCACTTGAGAAGAC 57.247 55.000 0.00 0.00 0.00 3.01
921 1504 1.186917 TAGAAACGGGAGGCCGAACA 61.187 55.000 0.00 0.00 36.94 3.18
933 1516 5.396484 TCACTTGTAATCCGAGTAGAAACG 58.604 41.667 0.00 0.00 35.47 3.60
937 1520 4.597004 ACCTCACTTGTAATCCGAGTAGA 58.403 43.478 0.00 0.00 35.47 2.59
998 1588 1.379527 GGTTGCACTTATAGGCGCTT 58.620 50.000 7.64 0.52 0.00 4.68
1036 1626 0.532573 ATCTGGTACGAGGCACACAG 59.467 55.000 4.95 0.00 0.00 3.66
1046 1642 2.546795 GGCTTGGATCTGATCTGGTACG 60.547 54.545 16.61 2.60 0.00 3.67
1061 1657 5.514274 TCACTAACTTTCTTTTGGCTTGG 57.486 39.130 0.00 0.00 0.00 3.61
1062 1658 6.693113 GTCTTCACTAACTTTCTTTTGGCTTG 59.307 38.462 0.00 0.00 0.00 4.01
1063 1659 6.183360 GGTCTTCACTAACTTTCTTTTGGCTT 60.183 38.462 0.00 0.00 0.00 4.35
1065 1661 5.507482 GGGTCTTCACTAACTTTCTTTTGGC 60.507 44.000 0.00 0.00 0.00 4.52
1066 1662 5.592688 TGGGTCTTCACTAACTTTCTTTTGG 59.407 40.000 0.00 0.00 0.00 3.28
1068 1664 5.593095 GGTGGGTCTTCACTAACTTTCTTTT 59.407 40.000 0.00 0.00 37.75 2.27
1072 1668 3.064931 CGGTGGGTCTTCACTAACTTTC 58.935 50.000 0.00 0.00 37.75 2.62
1073 1669 2.809299 GCGGTGGGTCTTCACTAACTTT 60.809 50.000 0.00 0.00 37.75 2.66
1075 1671 0.320697 GCGGTGGGTCTTCACTAACT 59.679 55.000 0.00 0.00 37.75 2.24
1076 1672 0.672711 GGCGGTGGGTCTTCACTAAC 60.673 60.000 0.00 0.00 37.75 2.34
1078 1674 2.642254 CGGCGGTGGGTCTTCACTA 61.642 63.158 0.00 0.00 37.75 2.74
1079 1675 4.003788 CGGCGGTGGGTCTTCACT 62.004 66.667 0.00 0.00 37.75 3.41
1080 1676 3.310860 ATCGGCGGTGGGTCTTCAC 62.311 63.158 7.21 0.00 36.95 3.18
1250 1885 2.332654 GGGGCCGTTTGTACAGCTG 61.333 63.158 13.48 13.48 0.00 4.24
1294 1929 1.421485 GTTGTCAGCCGCAGATTCG 59.579 57.895 0.00 0.00 0.00 3.34
1303 1938 2.914379 ACAAGCTACGTTGTCAGCC 58.086 52.632 4.45 0.00 35.71 4.85
1456 2091 0.608130 TCTGTTGACAGGTGATCGGG 59.392 55.000 10.97 0.00 43.91 5.14
1522 2157 1.348538 TAATTGTGCCTGCGTCGTCG 61.349 55.000 0.00 0.00 40.37 5.12
1759 2394 1.677633 ATAACCCACCGGCAGCAAC 60.678 57.895 0.00 0.00 0.00 4.17
1789 2424 1.496001 AGGCCATCCATGTAGATGCAA 59.504 47.619 5.01 0.00 41.98 4.08
1891 2526 6.284459 CCCTTGAGTATAAGTCTTCATGTCC 58.716 44.000 0.00 0.00 0.00 4.02
2201 2854 1.967319 TCCCGGCAGCAATTCTTATC 58.033 50.000 0.00 0.00 0.00 1.75
2231 2884 7.450903 TCCCTTTTGTTGTTTTCCAAGTTTAA 58.549 30.769 0.00 0.00 32.51 1.52
2346 3000 9.871238 CGGGCTACATAACTATAATAAGTCATT 57.129 33.333 0.00 0.00 0.00 2.57
2383 3039 7.201670 CGACCCTACTGGACCATTTTTAATAAC 60.202 40.741 0.00 0.00 38.00 1.89
2466 3122 3.670625 ACGTTAGCAAGCCAGATAAACA 58.329 40.909 0.00 0.00 0.00 2.83
2485 3141 7.230466 AGGAAGACGTTTAAATATAGCAACG 57.770 36.000 10.21 10.21 45.87 4.10
2523 3179 4.306600 GGACCCAAAACAAAACATGCTAG 58.693 43.478 0.00 0.00 0.00 3.42
2604 3272 4.892965 TGCGGGCTGGTTGCTGTT 62.893 61.111 0.00 0.00 42.39 3.16
2658 3326 1.454847 GGGTTGCCACACACCAGAA 60.455 57.895 0.00 0.00 0.00 3.02
2901 3583 0.608035 GAGGGCGTTGTTGGATTGGA 60.608 55.000 0.00 0.00 0.00 3.53
2968 3650 2.168521 CGCCAGGTAGAAGGATGAGAAA 59.831 50.000 0.00 0.00 0.00 2.52
3099 3833 9.939802 AATCTACAAAGAACTTACGGTTATCTT 57.060 29.630 0.00 0.00 38.41 2.40
3192 3927 9.927668 ATTTTTGACACCCTGTATTATTTCAAG 57.072 29.630 0.00 0.00 0.00 3.02
3411 4150 2.746904 CGCCAGTGTTATCACATTTCCA 59.253 45.455 6.70 0.00 46.01 3.53
3430 4169 4.394795 CTTGCATGTAGAAGTTAACACGC 58.605 43.478 8.61 2.79 35.49 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.