Multiple sequence alignment - TraesCS2B01G394000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G394000 chr2B 100.000 5220 0 0 2016 7235 558285299 558290518 0.000000e+00 9640.0
1 TraesCS2B01G394000 chr2B 92.524 4026 260 35 2112 6115 189924947 189928953 0.000000e+00 5729.0
2 TraesCS2B01G394000 chr2B 93.098 3912 241 25 2220 6116 316853977 316850080 0.000000e+00 5701.0
3 TraesCS2B01G394000 chr2B 100.000 1730 0 0 1 1730 558283284 558285013 0.000000e+00 3195.0
4 TraesCS2B01G394000 chr2B 91.921 557 34 9 1141 1690 312921067 312920515 0.000000e+00 769.0
5 TraesCS2B01G394000 chr2B 91.697 554 40 5 1142 1690 443344208 443343656 0.000000e+00 763.0
6 TraesCS2B01G394000 chr2B 85.503 338 46 2 773 1107 557989663 557989326 4.150000e-92 350.0
7 TraesCS2B01G394000 chr2B 85.039 127 18 1 6113 6238 557989292 557989166 2.120000e-25 128.0
8 TraesCS2B01G394000 chr6B 93.293 3996 240 20 2136 6116 145261780 145265762 0.000000e+00 5869.0
9 TraesCS2B01G394000 chr6B 93.142 3966 241 24 2112 6059 145269398 145273350 0.000000e+00 5788.0
10 TraesCS2B01G394000 chr6B 92.516 4022 267 27 2112 6116 285630299 285634303 0.000000e+00 5729.0
11 TraesCS2B01G394000 chr6B 92.458 4031 262 37 2112 6116 423494940 423498954 0.000000e+00 5722.0
12 TraesCS2B01G394000 chr6B 93.384 529 31 4 1142 1668 543516279 543515753 0.000000e+00 780.0
13 TraesCS2B01G394000 chr6B 91.892 555 38 7 1141 1690 186334627 186335179 0.000000e+00 769.0
14 TraesCS2B01G394000 chr6B 91.589 214 15 3 2112 2322 285623789 285624002 7.100000e-75 292.0
15 TraesCS2B01G394000 chr1B 93.595 3903 232 17 2221 6116 438911277 438907386 0.000000e+00 5806.0
16 TraesCS2B01G394000 chr1B 93.419 3905 238 18 2216 6114 438918837 438914946 0.000000e+00 5770.0
17 TraesCS2B01G394000 chr1B 93.439 3856 232 17 2261 6111 107176800 107180639 0.000000e+00 5699.0
18 TraesCS2B01G394000 chr1B 90.373 3885 312 41 2252 6116 23524006 23520164 0.000000e+00 5046.0
19 TraesCS2B01G394000 chr1B 90.089 3814 318 37 2252 6048 23531733 23527963 0.000000e+00 4894.0
20 TraesCS2B01G394000 chr3B 94.136 3786 210 12 2336 6116 354891621 354895399 0.000000e+00 5751.0
21 TraesCS2B01G394000 chr3B 91.892 555 37 7 1142 1690 669553739 669554291 0.000000e+00 769.0
22 TraesCS2B01G394000 chr3B 91.697 554 39 6 1142 1690 669546170 669546721 0.000000e+00 761.0
23 TraesCS2B01G394000 chr3B 90.000 590 44 13 1142 1718 273311287 273311874 0.000000e+00 749.0
24 TraesCS2B01G394000 chr4B 87.178 3923 418 68 2225 6116 556742973 556746841 0.000000e+00 4379.0
25 TraesCS2B01G394000 chr2D 92.995 1142 76 4 1 1141 476912955 476914093 0.000000e+00 1663.0
26 TraesCS2B01G394000 chr2D 91.243 354 30 1 6117 6469 476914098 476914451 1.410000e-131 481.0
27 TraesCS2B01G394000 chr2D 83.981 412 37 8 6825 7235 476955168 476955551 1.150000e-97 368.0
28 TraesCS2B01G394000 chr2D 83.844 359 55 2 752 1107 476849395 476849753 8.990000e-89 339.0
29 TraesCS2B01G394000 chr2D 93.846 130 7 1 6341 6469 476935140 476935269 2.060000e-45 195.0
30 TraesCS2B01G394000 chr2D 85.075 134 17 3 6117 6249 476849792 476849923 4.550000e-27 134.0
31 TraesCS2B01G394000 chr7D 87.942 1103 118 8 1 1102 205139126 205138038 0.000000e+00 1286.0
32 TraesCS2B01G394000 chr5B 87.500 1088 129 6 1 1087 579039942 579041023 0.000000e+00 1249.0
33 TraesCS2B01G394000 chr5B 85.636 1100 129 16 1 1086 578826671 578827755 0.000000e+00 1129.0
34 TraesCS2B01G394000 chr5B 92.463 544 35 5 1141 1679 35481150 35481692 0.000000e+00 773.0
35 TraesCS2B01G394000 chr2A 93.333 690 41 4 1 686 619238325 619239013 0.000000e+00 1014.0
36 TraesCS2B01G394000 chr2A 87.645 518 48 5 628 1141 619239015 619239520 8.090000e-164 588.0
37 TraesCS2B01G394000 chr2A 84.055 577 85 7 1 575 619209189 619209760 3.820000e-152 549.0
38 TraesCS2B01G394000 chr2A 89.305 374 33 3 6111 6477 619239522 619239895 5.110000e-126 462.0
39 TraesCS2B01G394000 chr2A 85.352 355 49 2 756 1107 619215467 619215821 1.480000e-96 364.0
40 TraesCS2B01G394000 chr2A 92.308 234 17 1 7003 7235 619240505 619240738 1.500000e-86 331.0
41 TraesCS2B01G394000 chr2A 80.623 289 28 15 6706 6984 619240250 619240520 1.590000e-46 198.0
42 TraesCS2B01G394000 chr2A 85.827 127 17 1 6113 6238 619215855 619215981 4.550000e-27 134.0
43 TraesCS2B01G394000 chr5D 86.379 881 111 7 1 880 472404107 472404979 0.000000e+00 953.0
44 TraesCS2B01G394000 chrUn 93.762 529 29 4 1142 1668 391302473 391302999 0.000000e+00 791.0
45 TraesCS2B01G394000 chr7A 85.516 649 89 5 1 648 217230509 217229865 0.000000e+00 673.0
46 TraesCS2B01G394000 chr7A 87.147 319 41 0 784 1102 217222950 217222632 5.330000e-96 363.0
47 TraesCS2B01G394000 chr3A 88.571 70 8 0 46 115 77916657 77916726 1.290000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G394000 chr2B 558283284 558290518 7234 False 6417.5 9640 100.0000 1 7235 2 chr2B.!!$F2 7234
1 TraesCS2B01G394000 chr2B 189924947 189928953 4006 False 5729.0 5729 92.5240 2112 6115 1 chr2B.!!$F1 4003
2 TraesCS2B01G394000 chr2B 316850080 316853977 3897 True 5701.0 5701 93.0980 2220 6116 1 chr2B.!!$R2 3896
3 TraesCS2B01G394000 chr2B 312920515 312921067 552 True 769.0 769 91.9210 1141 1690 1 chr2B.!!$R1 549
4 TraesCS2B01G394000 chr2B 443343656 443344208 552 True 763.0 763 91.6970 1142 1690 1 chr2B.!!$R3 548
5 TraesCS2B01G394000 chr6B 145261780 145273350 11570 False 5828.5 5869 93.2175 2112 6116 2 chr6B.!!$F5 4004
6 TraesCS2B01G394000 chr6B 285630299 285634303 4004 False 5729.0 5729 92.5160 2112 6116 1 chr6B.!!$F3 4004
7 TraesCS2B01G394000 chr6B 423494940 423498954 4014 False 5722.0 5722 92.4580 2112 6116 1 chr6B.!!$F4 4004
8 TraesCS2B01G394000 chr6B 543515753 543516279 526 True 780.0 780 93.3840 1142 1668 1 chr6B.!!$R1 526
9 TraesCS2B01G394000 chr6B 186334627 186335179 552 False 769.0 769 91.8920 1141 1690 1 chr6B.!!$F1 549
10 TraesCS2B01G394000 chr1B 438907386 438918837 11451 True 5788.0 5806 93.5070 2216 6116 2 chr1B.!!$R2 3900
11 TraesCS2B01G394000 chr1B 107176800 107180639 3839 False 5699.0 5699 93.4390 2261 6111 1 chr1B.!!$F1 3850
12 TraesCS2B01G394000 chr1B 23520164 23531733 11569 True 4970.0 5046 90.2310 2252 6116 2 chr1B.!!$R1 3864
13 TraesCS2B01G394000 chr3B 354891621 354895399 3778 False 5751.0 5751 94.1360 2336 6116 1 chr3B.!!$F2 3780
14 TraesCS2B01G394000 chr3B 669553739 669554291 552 False 769.0 769 91.8920 1142 1690 1 chr3B.!!$F4 548
15 TraesCS2B01G394000 chr3B 669546170 669546721 551 False 761.0 761 91.6970 1142 1690 1 chr3B.!!$F3 548
16 TraesCS2B01G394000 chr3B 273311287 273311874 587 False 749.0 749 90.0000 1142 1718 1 chr3B.!!$F1 576
17 TraesCS2B01G394000 chr4B 556742973 556746841 3868 False 4379.0 4379 87.1780 2225 6116 1 chr4B.!!$F1 3891
18 TraesCS2B01G394000 chr2D 476912955 476914451 1496 False 1072.0 1663 92.1190 1 6469 2 chr2D.!!$F4 6468
19 TraesCS2B01G394000 chr2D 476849395 476849923 528 False 236.5 339 84.4595 752 6249 2 chr2D.!!$F3 5497
20 TraesCS2B01G394000 chr7D 205138038 205139126 1088 True 1286.0 1286 87.9420 1 1102 1 chr7D.!!$R1 1101
21 TraesCS2B01G394000 chr5B 579039942 579041023 1081 False 1249.0 1249 87.5000 1 1087 1 chr5B.!!$F3 1086
22 TraesCS2B01G394000 chr5B 578826671 578827755 1084 False 1129.0 1129 85.6360 1 1086 1 chr5B.!!$F2 1085
23 TraesCS2B01G394000 chr5B 35481150 35481692 542 False 773.0 773 92.4630 1141 1679 1 chr5B.!!$F1 538
24 TraesCS2B01G394000 chr2A 619209189 619209760 571 False 549.0 549 84.0550 1 575 1 chr2A.!!$F1 574
25 TraesCS2B01G394000 chr2A 619238325 619240738 2413 False 518.6 1014 88.6428 1 7235 5 chr2A.!!$F3 7234
26 TraesCS2B01G394000 chr2A 619215467 619215981 514 False 249.0 364 85.5895 756 6238 2 chr2A.!!$F2 5482
27 TraesCS2B01G394000 chr5D 472404107 472404979 872 False 953.0 953 86.3790 1 880 1 chr5D.!!$F1 879
28 TraesCS2B01G394000 chrUn 391302473 391302999 526 False 791.0 791 93.7620 1142 1668 1 chrUn.!!$F1 526
29 TraesCS2B01G394000 chr7A 217229865 217230509 644 True 673.0 673 85.5160 1 648 1 chr7A.!!$R2 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 188 0.448593 CTCGACGAGTTCCTCTCCAC 59.551 60.0 16.83 0.0 39.84 4.02 F
1115 1195 0.601311 GCCGTCTCCATGAGGTATGC 60.601 60.0 0.00 0.0 35.37 3.14 F
1609 1692 0.250513 ACCGCTCCTCATTTGGACTC 59.749 55.0 0.00 0.0 31.94 3.36 F
1610 1693 0.539051 CCGCTCCTCATTTGGACTCT 59.461 55.0 0.00 0.0 31.94 3.24 F
3239 11382 0.413037 TCCATCCATGCCCCTGTTTT 59.587 50.0 0.00 0.0 0.00 2.43 F
4460 12611 0.599204 GTTCGTCTCCGCTTGGTTCA 60.599 55.0 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 1673 0.250513 GAGTCCAAATGAGGAGCGGT 59.749 55.000 0.00 0.00 38.64 5.68 R
2382 2481 1.067250 GAGCTCCGGATGCAGAGAC 59.933 63.158 22.44 8.86 31.43 3.36 R
3217 11360 1.533187 ACAGGGGCATGGATGGATAA 58.467 50.000 0.00 0.00 0.00 1.75 R
3396 11539 3.821033 GCACCCAACAGTAAGAAGACATT 59.179 43.478 0.00 0.00 0.00 2.71 R
4994 13149 0.539438 GGTGGTGGTGAGGCAAATGA 60.539 55.000 0.00 0.00 0.00 2.57 R
6242 18008 0.529833 ATCACGAGGCTGAGTCACTG 59.470 55.000 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 187 1.306642 GCTCGACGAGTTCCTCTCCA 61.307 60.000 24.80 0.00 39.84 3.86
184 188 0.448593 CTCGACGAGTTCCTCTCCAC 59.551 60.000 16.83 0.00 39.84 4.02
219 223 2.750637 TCGAGGACCACTCCGAGC 60.751 66.667 0.00 0.00 43.57 5.03
425 429 2.683933 ATCGGCTCCGTCCTTGGT 60.684 61.111 8.28 0.00 40.74 3.67
427 431 3.382832 CGGCTCCGTCCTTGGTCT 61.383 66.667 0.00 0.00 34.35 3.85
432 436 1.152204 TCCGTCCTTGGTCTGGGAA 60.152 57.895 0.00 0.00 33.01 3.97
532 536 2.639286 CACCGCCAACAAGCTGTC 59.361 61.111 0.00 0.00 0.00 3.51
581 585 2.264480 CCCTTCATGCACCGTCGA 59.736 61.111 0.00 0.00 0.00 4.20
582 586 2.100631 CCCTTCATGCACCGTCGAC 61.101 63.158 5.18 5.18 0.00 4.20
585 589 1.674611 CTTCATGCACCGTCGACGTC 61.675 60.000 33.49 22.41 37.74 4.34
586 590 3.532792 CATGCACCGTCGACGTCG 61.533 66.667 33.49 31.30 41.45 5.12
630 634 2.297701 GGTTCAAGGTGCTCAAACTCA 58.702 47.619 0.00 0.00 0.00 3.41
648 652 2.749621 CTCAGGTACCAAATGGCTCAAC 59.250 50.000 15.94 0.00 39.32 3.18
728 796 4.357142 CAATGCATTACATCTTGCTCACC 58.643 43.478 12.53 0.00 38.34 4.02
748 816 1.204704 CTCTGTTGATAGGCCGACACA 59.795 52.381 0.00 0.00 0.00 3.72
804 872 2.568546 TCTTCCTCCCTGATGCCTTA 57.431 50.000 0.00 0.00 0.00 2.69
936 1016 1.292223 GTCCTTCCACAGCAGCGTA 59.708 57.895 0.00 0.00 0.00 4.42
1074 1154 1.120530 AGGCGGTCATCGAGGTAAAT 58.879 50.000 0.00 0.00 42.43 1.40
1109 1189 2.202987 GGCTGCCGTCTCCATGAG 60.203 66.667 1.35 0.00 0.00 2.90
1115 1195 0.601311 GCCGTCTCCATGAGGTATGC 60.601 60.000 0.00 0.00 35.37 3.14
1124 1204 2.562738 CCATGAGGTATGCGGACATAGA 59.437 50.000 0.00 0.00 39.44 1.98
1129 1209 3.990469 GAGGTATGCGGACATAGAATGTG 59.010 47.826 0.00 0.00 45.03 3.21
1168 1248 4.592192 CGGATCCGATGCGCCAGT 62.592 66.667 30.62 0.00 42.83 4.00
1186 1266 3.314553 CAGTTGTCCGTCAGTTATTCGT 58.685 45.455 0.00 0.00 0.00 3.85
1192 1272 1.058695 CCGTCAGTTATTCGTCGTTGC 59.941 52.381 0.00 0.00 0.00 4.17
1231 1311 6.073657 GCTTGTGTGTTGCATTTTATCATGTT 60.074 34.615 0.00 0.00 0.00 2.71
1572 1655 1.303091 TGCTCTCGGTCGTTCGATCA 61.303 55.000 6.30 1.41 38.55 2.92
1590 1673 2.558821 CGATTGCGTGGCCGAAAA 59.441 55.556 0.00 0.00 34.65 2.29
1591 1674 1.795962 CGATTGCGTGGCCGAAAAC 60.796 57.895 0.00 0.00 34.65 2.43
1592 1675 1.443702 GATTGCGTGGCCGAAAACC 60.444 57.895 0.00 0.00 34.65 3.27
1593 1676 3.262142 ATTGCGTGGCCGAAAACCG 62.262 57.895 0.00 0.00 34.65 4.44
1596 1679 4.084888 CGTGGCCGAAAACCGCTC 62.085 66.667 0.00 0.00 35.46 5.03
1597 1680 3.733960 GTGGCCGAAAACCGCTCC 61.734 66.667 0.00 0.00 36.84 4.70
1598 1681 3.948719 TGGCCGAAAACCGCTCCT 61.949 61.111 0.00 0.00 36.84 3.69
1599 1682 3.125573 GGCCGAAAACCGCTCCTC 61.126 66.667 0.00 0.00 36.84 3.71
1600 1683 2.358247 GCCGAAAACCGCTCCTCA 60.358 61.111 0.00 0.00 36.84 3.86
1601 1684 1.745489 GCCGAAAACCGCTCCTCAT 60.745 57.895 0.00 0.00 36.84 2.90
1602 1685 1.305930 GCCGAAAACCGCTCCTCATT 61.306 55.000 0.00 0.00 36.84 2.57
1603 1686 1.165270 CCGAAAACCGCTCCTCATTT 58.835 50.000 0.00 0.00 36.84 2.32
1604 1687 1.135689 CCGAAAACCGCTCCTCATTTG 60.136 52.381 0.00 0.00 36.84 2.32
1605 1688 1.135689 CGAAAACCGCTCCTCATTTGG 60.136 52.381 0.00 0.00 0.00 3.28
1606 1689 2.159382 GAAAACCGCTCCTCATTTGGA 58.841 47.619 0.00 0.00 34.52 3.53
1607 1690 1.534729 AAACCGCTCCTCATTTGGAC 58.465 50.000 0.00 0.00 31.94 4.02
1608 1691 0.693049 AACCGCTCCTCATTTGGACT 59.307 50.000 0.00 0.00 31.94 3.85
1609 1692 0.250513 ACCGCTCCTCATTTGGACTC 59.749 55.000 0.00 0.00 31.94 3.36
1610 1693 0.539051 CCGCTCCTCATTTGGACTCT 59.461 55.000 0.00 0.00 31.94 3.24
1611 1694 1.472376 CCGCTCCTCATTTGGACTCTC 60.472 57.143 0.00 0.00 31.94 3.20
1612 1695 1.472376 CGCTCCTCATTTGGACTCTCC 60.472 57.143 0.00 0.00 36.96 3.71
1613 1696 1.836802 GCTCCTCATTTGGACTCTCCT 59.163 52.381 0.00 0.00 37.46 3.69
1614 1697 3.034635 GCTCCTCATTTGGACTCTCCTA 58.965 50.000 0.00 0.00 37.46 2.94
1615 1698 3.452627 GCTCCTCATTTGGACTCTCCTAA 59.547 47.826 0.00 0.00 37.46 2.69
1616 1699 4.682050 GCTCCTCATTTGGACTCTCCTAAC 60.682 50.000 0.00 0.00 34.30 2.34
1617 1700 4.689062 TCCTCATTTGGACTCTCCTAACT 58.311 43.478 0.00 0.00 34.30 2.24
1618 1701 4.712337 TCCTCATTTGGACTCTCCTAACTC 59.288 45.833 0.00 0.00 34.30 3.01
1619 1702 4.141824 CCTCATTTGGACTCTCCTAACTCC 60.142 50.000 0.00 0.00 34.30 3.85
1620 1703 3.775316 TCATTTGGACTCTCCTAACTCCC 59.225 47.826 0.00 0.00 34.30 4.30
1621 1704 3.562108 TTTGGACTCTCCTAACTCCCT 57.438 47.619 0.00 0.00 37.46 4.20
1622 1705 2.830651 TGGACTCTCCTAACTCCCTC 57.169 55.000 0.00 0.00 37.46 4.30
1623 1706 2.289467 TGGACTCTCCTAACTCCCTCT 58.711 52.381 0.00 0.00 37.46 3.69
1624 1707 3.471879 TGGACTCTCCTAACTCCCTCTA 58.528 50.000 0.00 0.00 37.46 2.43
1625 1708 3.202595 TGGACTCTCCTAACTCCCTCTAC 59.797 52.174 0.00 0.00 37.46 2.59
1626 1709 3.435457 GGACTCTCCTAACTCCCTCTACC 60.435 56.522 0.00 0.00 32.53 3.18
1627 1710 3.460712 GACTCTCCTAACTCCCTCTACCT 59.539 52.174 0.00 0.00 0.00 3.08
1628 1711 4.644010 ACTCTCCTAACTCCCTCTACCTA 58.356 47.826 0.00 0.00 0.00 3.08
1629 1712 5.237134 ACTCTCCTAACTCCCTCTACCTAT 58.763 45.833 0.00 0.00 0.00 2.57
1630 1713 6.400725 ACTCTCCTAACTCCCTCTACCTATA 58.599 44.000 0.00 0.00 0.00 1.31
1631 1714 6.856140 ACTCTCCTAACTCCCTCTACCTATAA 59.144 42.308 0.00 0.00 0.00 0.98
1632 1715 7.353058 ACTCTCCTAACTCCCTCTACCTATAAA 59.647 40.741 0.00 0.00 0.00 1.40
1633 1716 8.303338 TCTCCTAACTCCCTCTACCTATAAAT 57.697 38.462 0.00 0.00 0.00 1.40
1634 1717 8.744365 TCTCCTAACTCCCTCTACCTATAAATT 58.256 37.037 0.00 0.00 0.00 1.82
1637 1720 8.751242 CCTAACTCCCTCTACCTATAAATTAGC 58.249 40.741 0.00 0.00 0.00 3.09
1638 1721 7.556416 AACTCCCTCTACCTATAAATTAGCC 57.444 40.000 0.00 0.00 0.00 3.93
1639 1722 6.024247 ACTCCCTCTACCTATAAATTAGCCC 58.976 44.000 0.00 0.00 0.00 5.19
1640 1723 5.347978 TCCCTCTACCTATAAATTAGCCCC 58.652 45.833 0.00 0.00 0.00 5.80
1641 1724 4.473922 CCCTCTACCTATAAATTAGCCCCC 59.526 50.000 0.00 0.00 0.00 5.40
1642 1725 5.351405 CCTCTACCTATAAATTAGCCCCCT 58.649 45.833 0.00 0.00 0.00 4.79
1643 1726 5.425862 CCTCTACCTATAAATTAGCCCCCTC 59.574 48.000 0.00 0.00 0.00 4.30
1644 1727 5.347978 TCTACCTATAAATTAGCCCCCTCC 58.652 45.833 0.00 0.00 0.00 4.30
1645 1728 3.266374 ACCTATAAATTAGCCCCCTCCC 58.734 50.000 0.00 0.00 0.00 4.30
1646 1729 2.581246 CCTATAAATTAGCCCCCTCCCC 59.419 54.545 0.00 0.00 0.00 4.81
1647 1730 1.467969 ATAAATTAGCCCCCTCCCCC 58.532 55.000 0.00 0.00 0.00 5.40
1648 1731 1.063654 TAAATTAGCCCCCTCCCCCG 61.064 60.000 0.00 0.00 0.00 5.73
1649 1732 2.868790 AAATTAGCCCCCTCCCCCGA 62.869 60.000 0.00 0.00 0.00 5.14
1650 1733 2.868790 AATTAGCCCCCTCCCCCGAA 62.869 60.000 0.00 0.00 0.00 4.30
1651 1734 2.868790 ATTAGCCCCCTCCCCCGAAA 62.869 60.000 0.00 0.00 0.00 3.46
1652 1735 2.868790 TTAGCCCCCTCCCCCGAAAT 62.869 60.000 0.00 0.00 0.00 2.17
1653 1736 4.205484 GCCCCCTCCCCCGAAATC 62.205 72.222 0.00 0.00 0.00 2.17
1654 1737 2.368329 CCCCCTCCCCCGAAATCT 60.368 66.667 0.00 0.00 0.00 2.40
1655 1738 2.452937 CCCCCTCCCCCGAAATCTC 61.453 68.421 0.00 0.00 0.00 2.75
1656 1739 2.808206 CCCCTCCCCCGAAATCTCG 61.808 68.421 0.00 0.00 45.02 4.04
1687 1770 3.361977 TTTTTCCTCTGCGCCGGC 61.362 61.111 19.07 19.07 40.52 6.13
1708 1791 4.760047 CGCTCCCCGTCCAACCTG 62.760 72.222 0.00 0.00 0.00 4.00
1709 1792 3.637273 GCTCCCCGTCCAACCTGT 61.637 66.667 0.00 0.00 0.00 4.00
1710 1793 2.347490 CTCCCCGTCCAACCTGTG 59.653 66.667 0.00 0.00 0.00 3.66
1711 1794 3.901797 CTCCCCGTCCAACCTGTGC 62.902 68.421 0.00 0.00 0.00 4.57
1719 1802 3.124270 CAACCTGTGCGCGCCATA 61.124 61.111 30.77 13.83 0.00 2.74
1720 1803 2.124736 AACCTGTGCGCGCCATAT 60.125 55.556 30.77 13.39 0.00 1.78
1721 1804 2.472059 AACCTGTGCGCGCCATATG 61.472 57.895 30.77 15.59 0.00 1.78
1722 1805 3.653009 CCTGTGCGCGCCATATGG 61.653 66.667 30.77 18.07 38.53 2.74
2083 2166 4.219999 GCTCGCAGCTCCTCCTCC 62.220 72.222 0.00 0.00 38.45 4.30
2084 2167 3.535962 CTCGCAGCTCCTCCTCCC 61.536 72.222 0.00 0.00 0.00 4.30
2241 2324 2.684104 CCTCCTCCTCCTCCGTCA 59.316 66.667 0.00 0.00 0.00 4.35
2364 2463 9.533831 AGTCCCAGATTTTAGTAATTTTCATGT 57.466 29.630 0.00 0.00 0.00 3.21
2382 2481 2.693797 GTCATGTTTGACCTGCTGTG 57.306 50.000 0.00 0.00 45.45 3.66
2395 2494 1.812922 GCTGTGTCTCTGCATCCGG 60.813 63.158 0.00 0.00 40.09 5.14
2532 10674 7.750229 AAGAGTGCTTCATAATGTTTTCTGA 57.250 32.000 0.00 0.00 0.00 3.27
2558 10700 5.403246 TCTGTTATCAGAACGAGCTCTTTC 58.597 41.667 21.95 21.95 46.17 2.62
2577 10719 6.918626 TCTTTCGTCATTTTTGCCATGATTA 58.081 32.000 0.00 0.00 33.22 1.75
2642 10784 7.178628 TGAACTAGGCTATGTCTTCTTTACAGT 59.821 37.037 0.00 0.00 0.00 3.55
2685 10827 5.247862 TGTGATCAATGTGTTGACTAGCAT 58.752 37.500 0.00 0.00 46.43 3.79
2718 10860 4.638304 ACTAGGCTTCGTGTTAATGTTGT 58.362 39.130 0.00 0.00 0.00 3.32
2721 10863 4.855531 AGGCTTCGTGTTAATGTTGTTTC 58.144 39.130 0.00 0.00 0.00 2.78
2778 10920 7.217200 TGTAAACTTGTTGCTACAGAGAGATT 58.783 34.615 13.89 7.83 35.28 2.40
2819 10961 5.506708 ACTTCAGTAAGGGTGTTTTGAACT 58.493 37.500 0.00 0.00 37.01 3.01
2930 11072 3.252215 TGTTTCCTGGCAGATTGTTTACG 59.748 43.478 17.94 0.00 0.00 3.18
2943 11085 9.549509 GCAGATTGTTTACGTGTTATTCAATTA 57.450 29.630 0.00 0.00 0.00 1.40
2993 11135 3.138884 TGCTATGGACTTGTTCTTGCA 57.861 42.857 0.00 0.00 0.00 4.08
3092 11235 4.980434 TCGAGCTTGTTAAGTAGTGTTCAC 59.020 41.667 0.00 0.00 0.00 3.18
3140 11283 9.541143 TGAATCTGTTATTTCGTGATGCTATAA 57.459 29.630 0.00 0.00 0.00 0.98
3217 11360 8.051535 ACATGTTTTGATCTACATCTCATCCTT 58.948 33.333 0.00 0.00 32.88 3.36
3239 11382 0.413037 TCCATCCATGCCCCTGTTTT 59.587 50.000 0.00 0.00 0.00 2.43
3245 11388 2.978278 TCCATGCCCCTGTTTTCATTTT 59.022 40.909 0.00 0.00 0.00 1.82
3249 11392 5.279910 CCATGCCCCTGTTTTCATTTTTAGA 60.280 40.000 0.00 0.00 0.00 2.10
3304 11447 4.325028 TGCTTGAAAATGTTGCTGTCAT 57.675 36.364 0.00 0.00 0.00 3.06
3335 11478 9.575868 TTTACATTAAGTTCACTTGTTCCCATA 57.424 29.630 2.26 0.00 37.40 2.74
3390 11533 1.475682 GCTCTTGCCATGCTTAGCTTT 59.524 47.619 5.60 0.00 0.00 3.51
3396 11539 4.862902 TGCCATGCTTAGCTTTACAAAA 57.137 36.364 5.60 0.00 0.00 2.44
3618 11763 5.121105 TGAGTAGAATCATGCCATGTCTTG 58.879 41.667 4.31 0.00 0.00 3.02
3958 12106 7.201644 CCGTTTTGAGTGTGCTCTATATGAAAT 60.202 37.037 0.00 0.00 42.13 2.17
4254 12403 8.563123 TTACCGGAATTGTTATATGTTGTTCA 57.437 30.769 9.46 0.00 0.00 3.18
4302 12451 6.141560 TGTGTTGTTCTTGTTTGCATCATA 57.858 33.333 0.00 0.00 0.00 2.15
4378 12528 4.084011 TCATGTCTTGTTCATGTGTGGA 57.916 40.909 5.94 0.00 42.03 4.02
4417 12567 5.989777 GTGTGCTTCTTCTTGTTAGTTCCTA 59.010 40.000 0.00 0.00 0.00 2.94
4449 12600 1.129998 TCGTGAGGATTCGTTCGTCTC 59.870 52.381 10.51 7.26 39.48 3.36
4460 12611 0.599204 GTTCGTCTCCGCTTGGTTCA 60.599 55.000 0.00 0.00 0.00 3.18
4597 12748 2.775351 GCTATGTTGCGCCACCTAA 58.225 52.632 9.38 0.00 0.00 2.69
4624 12775 5.598005 CCTGTTTATCAAGCCATCCCAAATA 59.402 40.000 0.00 0.00 0.00 1.40
4629 12780 1.410153 CAAGCCATCCCAAATAGCCAC 59.590 52.381 0.00 0.00 0.00 5.01
4645 12797 2.901839 AGCCACGAACCTCTAACCTTTA 59.098 45.455 0.00 0.00 0.00 1.85
4946 13101 0.621609 TTTATGGGACCCCCTTGACG 59.378 55.000 8.45 0.00 45.70 4.35
4969 13124 5.154222 GGTTCGCTTTGAATAAAACTCCTG 58.846 41.667 0.00 0.00 39.21 3.86
5143 13305 2.283529 GGGGCAACTCGAGGTCTGA 61.284 63.158 18.41 0.00 0.00 3.27
5260 13424 5.912955 GGTCTTGTTTTACCATTGTCGAAAG 59.087 40.000 0.00 0.00 35.73 2.62
5306 13470 0.688087 GATCGGGTCTTCCTGGGAGT 60.688 60.000 0.97 0.00 40.36 3.85
5392 13557 1.234821 AATCTTTCGAAAGCCGTGCA 58.765 45.000 29.10 14.05 39.75 4.57
5453 13619 6.879458 GGTTGTAGATAACTTGACACCAGATT 59.121 38.462 0.00 0.00 0.00 2.40
5511 13677 1.027792 GTCTCTTCTCGGCGGAGTCT 61.028 60.000 19.51 0.00 41.26 3.24
5533 13699 2.557317 GGAAGTGAACACGGTTTCTGA 58.443 47.619 0.00 0.00 36.20 3.27
5786 13954 3.849563 ACAGTTGCAGGTACAGGTTTA 57.150 42.857 0.00 0.00 0.00 2.01
5789 13957 4.041691 ACAGTTGCAGGTACAGGTTTATCT 59.958 41.667 0.00 0.00 0.00 1.98
5796 13964 6.058183 GCAGGTACAGGTTTATCTGATGATT 58.942 40.000 0.00 0.00 38.11 2.57
5907 14079 1.056660 AGGGTGGATGTCGTTTGAGT 58.943 50.000 0.00 0.00 0.00 3.41
5927 14099 5.652014 TGAGTTTTCTGTTTGTGTTCCATCT 59.348 36.000 0.00 0.00 0.00 2.90
6060 14232 3.497118 CAAAAGCGTTTCAATATGCGGA 58.503 40.909 0.00 0.00 35.20 5.54
6093 14265 2.173996 TGGGACCTTCGAGTTCCTTTTT 59.826 45.455 3.93 0.00 36.24 1.94
6242 18008 3.457099 ACGAGGACTAGGTCGTCTC 57.543 57.895 15.17 6.42 46.17 3.36
6257 18023 0.170116 GTCTCAGTGACTCAGCCTCG 59.830 60.000 0.00 0.00 42.21 4.63
6271 18156 4.606961 TCAGCCTCGTGATTTTGTTTTTC 58.393 39.130 0.00 0.00 0.00 2.29
6323 18211 1.114627 GATTTGGATCCCAGTTGGCC 58.885 55.000 9.90 0.00 33.81 5.36
6335 18390 6.274322 TCCCAGTTGGCCTAATAATAATGT 57.726 37.500 3.32 0.00 0.00 2.71
6405 19186 7.249147 TGTGCCTTTTGTTTCATTTGATTTTG 58.751 30.769 0.00 0.00 0.00 2.44
6477 19460 1.465200 TTCGACCATGTCACACGGGA 61.465 55.000 4.34 0.00 32.09 5.14
6479 19462 1.741770 GACCATGTCACACGGGAGC 60.742 63.158 4.34 0.00 32.09 4.70
6481 19464 0.902984 ACCATGTCACACGGGAGCTA 60.903 55.000 4.34 0.00 0.00 3.32
6482 19465 0.460284 CCATGTCACACGGGAGCTAC 60.460 60.000 0.00 0.00 0.00 3.58
6484 19467 1.749063 CATGTCACACGGGAGCTACTA 59.251 52.381 0.00 0.00 0.00 1.82
6487 19470 0.395311 TCACACGGGAGCTACTAGGG 60.395 60.000 0.00 0.00 0.00 3.53
6488 19471 0.395311 CACACGGGAGCTACTAGGGA 60.395 60.000 0.00 0.00 0.00 4.20
6489 19472 0.556747 ACACGGGAGCTACTAGGGAT 59.443 55.000 0.00 0.00 0.00 3.85
6490 19473 1.249407 CACGGGAGCTACTAGGGATC 58.751 60.000 0.00 0.00 0.00 3.36
6493 19476 1.074084 CGGGAGCTACTAGGGATCAGA 59.926 57.143 0.00 0.00 0.00 3.27
6495 19478 2.109304 GGGAGCTACTAGGGATCAGACT 59.891 54.545 0.00 0.00 0.00 3.24
6496 19479 3.331294 GGGAGCTACTAGGGATCAGACTA 59.669 52.174 0.00 0.00 0.00 2.59
6497 19480 4.329392 GGAGCTACTAGGGATCAGACTAC 58.671 52.174 0.00 0.00 0.00 2.73
6500 19483 3.244491 GCTACTAGGGATCAGACTACCGA 60.244 52.174 0.00 0.00 0.00 4.69
6502 19485 4.023726 ACTAGGGATCAGACTACCGATC 57.976 50.000 0.00 0.00 37.83 3.69
6509 19492 5.012328 GATCAGACTACCGATCCTTTGTT 57.988 43.478 0.00 0.00 33.37 2.83
6511 19494 4.817517 TCAGACTACCGATCCTTTGTTTC 58.182 43.478 0.00 0.00 0.00 2.78
6512 19495 3.933332 CAGACTACCGATCCTTTGTTTCC 59.067 47.826 0.00 0.00 0.00 3.13
6515 19498 4.514401 ACTACCGATCCTTTGTTTCCATC 58.486 43.478 0.00 0.00 0.00 3.51
6516 19499 3.433306 ACCGATCCTTTGTTTCCATCA 57.567 42.857 0.00 0.00 0.00 3.07
6517 19500 3.347216 ACCGATCCTTTGTTTCCATCAG 58.653 45.455 0.00 0.00 0.00 2.90
6518 19501 3.009033 ACCGATCCTTTGTTTCCATCAGA 59.991 43.478 0.00 0.00 0.00 3.27
6520 19503 4.256920 CGATCCTTTGTTTCCATCAGACT 58.743 43.478 0.00 0.00 0.00 3.24
6521 19504 5.419542 CGATCCTTTGTTTCCATCAGACTA 58.580 41.667 0.00 0.00 0.00 2.59
6522 19505 5.521735 CGATCCTTTGTTTCCATCAGACTAG 59.478 44.000 0.00 0.00 0.00 2.57
6523 19506 5.825593 TCCTTTGTTTCCATCAGACTAGT 57.174 39.130 0.00 0.00 0.00 2.57
6534 19517 2.180276 TCAGACTAGTGGAAGAAGGCC 58.820 52.381 0.00 0.00 0.00 5.19
6538 19521 0.460987 CTAGTGGAAGAAGGCCGCAG 60.461 60.000 0.00 0.00 38.38 5.18
6556 19539 5.560966 CGCAGGGTTACAAGAATAACATT 57.439 39.130 0.00 0.00 36.87 2.71
6558 19541 5.650543 GCAGGGTTACAAGAATAACATTGG 58.349 41.667 0.00 0.00 36.87 3.16
6559 19542 5.185056 GCAGGGTTACAAGAATAACATTGGT 59.815 40.000 0.00 0.00 36.87 3.67
6560 19543 6.625081 GCAGGGTTACAAGAATAACATTGGTC 60.625 42.308 0.00 0.00 36.87 4.02
6562 19545 5.413523 GGGTTACAAGAATAACATTGGTCGT 59.586 40.000 0.00 0.00 36.87 4.34
6564 19547 6.402875 GGTTACAAGAATAACATTGGTCGTCC 60.403 42.308 0.00 0.00 36.87 4.79
6565 19548 3.682858 ACAAGAATAACATTGGTCGTCCG 59.317 43.478 0.00 0.00 36.30 4.79
6566 19549 3.880047 AGAATAACATTGGTCGTCCGA 57.120 42.857 0.00 0.00 36.30 4.55
6567 19550 4.402056 AGAATAACATTGGTCGTCCGAT 57.598 40.909 0.00 0.00 38.30 4.18
6569 19552 4.099573 AGAATAACATTGGTCGTCCGATCT 59.900 41.667 0.00 0.00 35.76 2.75
6570 19553 2.010145 AACATTGGTCGTCCGATCTG 57.990 50.000 0.00 0.00 35.76 2.90
6572 19555 0.175760 CATTGGTCGTCCGATCTGGT 59.824 55.000 0.00 0.00 35.76 4.00
6574 19557 1.771565 TTGGTCGTCCGATCTGGTAT 58.228 50.000 1.28 0.00 39.52 2.73
6577 19560 1.606903 GTCGTCCGATCTGGTATCCT 58.393 55.000 0.00 0.00 39.52 3.24
6580 19563 1.267261 CGTCCGATCTGGTATCCTCAC 59.733 57.143 3.97 0.00 39.52 3.51
6583 19566 1.001268 CCGATCTGGTATCCTCACACG 60.001 57.143 0.00 0.00 0.00 4.49
6591 19574 4.813027 TGGTATCCTCACACGTAGTTTTC 58.187 43.478 0.00 0.00 41.61 2.29
6592 19575 4.525487 TGGTATCCTCACACGTAGTTTTCT 59.475 41.667 0.00 0.00 41.61 2.52
6594 19577 5.930569 GGTATCCTCACACGTAGTTTTCTTT 59.069 40.000 0.00 0.00 41.61 2.52
6598 19581 6.339730 TCCTCACACGTAGTTTTCTTTGTTA 58.660 36.000 0.00 0.00 41.61 2.41
6600 19583 7.496591 TCCTCACACGTAGTTTTCTTTGTTAAT 59.503 33.333 0.00 0.00 41.61 1.40
6601 19584 8.126700 CCTCACACGTAGTTTTCTTTGTTAATT 58.873 33.333 0.00 0.00 41.61 1.40
6602 19585 8.829514 TCACACGTAGTTTTCTTTGTTAATTG 57.170 30.769 0.00 0.00 41.61 2.32
6603 19586 7.429920 TCACACGTAGTTTTCTTTGTTAATTGC 59.570 33.333 0.00 0.00 41.61 3.56
6604 19587 7.431084 CACACGTAGTTTTCTTTGTTAATTGCT 59.569 33.333 0.00 0.00 41.61 3.91
6606 19589 8.259194 CACGTAGTTTTCTTTGTTAATTGCTTG 58.741 33.333 0.00 0.00 41.61 4.01
6609 19592 7.848223 AGTTTTCTTTGTTAATTGCTTGCTT 57.152 28.000 0.00 0.00 0.00 3.91
6612 19595 5.528043 TCTTTGTTAATTGCTTGCTTCCA 57.472 34.783 0.00 0.00 0.00 3.53
6614 19597 6.344500 TCTTTGTTAATTGCTTGCTTCCAAA 58.656 32.000 0.00 0.00 0.00 3.28
6620 19603 1.473258 TGCTTGCTTCCAAACACTGT 58.527 45.000 0.00 0.00 0.00 3.55
6624 19607 1.180907 TGCTTCCAAACACTGTTGCA 58.819 45.000 0.00 0.00 0.00 4.08
6628 19611 0.100325 TCCAAACACTGTTGCAAGCG 59.900 50.000 0.00 0.00 0.00 4.68
6629 19612 0.871163 CCAAACACTGTTGCAAGCGG 60.871 55.000 0.00 2.71 0.00 5.52
6630 19613 1.226945 AAACACTGTTGCAAGCGGC 60.227 52.632 0.00 0.00 45.13 6.53
6648 19631 1.205064 CAACGGCTGAAGTTGCGAG 59.795 57.895 0.00 0.00 41.77 5.03
6649 19632 2.607892 AACGGCTGAAGTTGCGAGC 61.608 57.895 0.00 0.00 0.00 5.03
6650 19633 3.043713 CGGCTGAAGTTGCGAGCA 61.044 61.111 0.00 0.00 34.20 4.26
6651 19634 2.866028 GGCTGAAGTTGCGAGCAG 59.134 61.111 0.00 0.00 34.20 4.24
6653 19636 1.206072 GCTGAAGTTGCGAGCAGTG 59.794 57.895 0.00 0.00 32.70 3.66
6655 19638 0.788995 CTGAAGTTGCGAGCAGTGAG 59.211 55.000 0.00 0.00 0.00 3.51
6656 19639 0.601046 TGAAGTTGCGAGCAGTGAGG 60.601 55.000 0.00 0.00 0.00 3.86
6657 19640 1.294659 GAAGTTGCGAGCAGTGAGGG 61.295 60.000 0.00 0.00 0.00 4.30
6658 19641 3.426568 GTTGCGAGCAGTGAGGGC 61.427 66.667 0.00 0.00 0.00 5.19
6662 19645 2.507992 CGAGCAGTGAGGGCGAAG 60.508 66.667 0.00 0.00 36.08 3.79
6664 19647 1.004440 GAGCAGTGAGGGCGAAGTT 60.004 57.895 0.00 0.00 36.08 2.66
6666 19649 2.970974 GCAGTGAGGGCGAAGTTGC 61.971 63.158 0.00 0.00 0.00 4.17
6668 19651 1.148273 AGTGAGGGCGAAGTTGCAA 59.852 52.632 0.00 0.00 36.28 4.08
6679 19662 4.963815 GTTGCAAACGGGGTGATG 57.036 55.556 0.00 0.00 36.92 3.07
6680 19663 1.372872 GTTGCAAACGGGGTGATGC 60.373 57.895 0.00 0.00 36.92 3.91
6682 19665 1.804396 TTGCAAACGGGGTGATGCTG 61.804 55.000 0.00 0.00 39.49 4.41
6683 19666 2.568090 CAAACGGGGTGATGCTGC 59.432 61.111 0.00 0.00 0.00 5.25
6685 19668 1.973281 AAACGGGGTGATGCTGCTG 60.973 57.895 0.00 0.00 0.00 4.41
6688 19671 4.783621 GGGGTGATGCTGCTGCGA 62.784 66.667 11.21 0.80 43.34 5.10
6689 19672 3.200593 GGGTGATGCTGCTGCGAG 61.201 66.667 11.21 0.00 43.34 5.03
6690 19673 3.200593 GGTGATGCTGCTGCGAGG 61.201 66.667 11.21 0.00 43.34 4.63
6714 19823 1.143183 GGCCGGCGACTAGAATTCA 59.857 57.895 22.54 0.00 0.00 2.57
6777 19886 0.659427 CAGCCAACATCTACGCATGG 59.341 55.000 0.00 0.00 0.00 3.66
6782 19891 3.758300 CCAACATCTACGCATGGTTTTC 58.242 45.455 0.00 0.00 0.00 2.29
6798 19908 4.097135 TGGTTTTCTTTTCATCGAAGCACA 59.903 37.500 0.00 0.00 0.00 4.57
6842 19972 5.063204 TGAACAAAACTCCACCTCATACAG 58.937 41.667 0.00 0.00 0.00 2.74
6854 19984 1.147824 CATACAGGAGGGGCAGCAG 59.852 63.158 0.00 0.00 0.00 4.24
6857 19987 2.176202 TACAGGAGGGGCAGCAGGTA 62.176 60.000 0.00 0.00 0.00 3.08
6858 19988 2.124996 AGGAGGGGCAGCAGGTAA 59.875 61.111 0.00 0.00 0.00 2.85
6861 19991 1.078143 GAGGGGCAGCAGGTAACAG 60.078 63.158 0.00 0.00 41.41 3.16
6862 19992 1.538876 AGGGGCAGCAGGTAACAGA 60.539 57.895 0.00 0.00 41.41 3.41
6889 20019 0.391793 GAAAGAAGGTCAGGCCCTCG 60.392 60.000 0.00 0.00 38.26 4.63
6905 20035 1.021202 CTCGGGCTTGACAACAACAA 58.979 50.000 0.00 0.00 32.27 2.83
6909 20039 1.203523 GGGCTTGACAACAACAACACA 59.796 47.619 0.00 0.00 32.27 3.72
6910 20040 2.353208 GGGCTTGACAACAACAACACAA 60.353 45.455 0.00 0.00 32.27 3.33
6911 20041 2.923020 GGCTTGACAACAACAACACAAG 59.077 45.455 0.00 0.00 38.07 3.16
6913 20043 2.254918 TGACAACAACAACACAAGCG 57.745 45.000 0.00 0.00 0.00 4.68
6914 20044 0.913876 GACAACAACAACACAAGCGC 59.086 50.000 0.00 0.00 0.00 5.92
6915 20045 0.242286 ACAACAACAACACAAGCGCA 59.758 45.000 11.47 0.00 0.00 6.09
6916 20046 0.639756 CAACAACAACACAAGCGCAC 59.360 50.000 11.47 0.00 0.00 5.34
6919 20049 1.191096 CAACAACACAAGCGCACTTC 58.809 50.000 11.47 0.00 32.29 3.01
6921 20051 0.378257 ACAACACAAGCGCACTTCAG 59.622 50.000 11.47 0.00 32.29 3.02
6922 20052 0.931662 CAACACAAGCGCACTTCAGC 60.932 55.000 11.47 0.00 32.29 4.26
6923 20053 1.375853 AACACAAGCGCACTTCAGCA 61.376 50.000 11.47 0.00 32.29 4.41
6927 20057 0.385223 CAAGCGCACTTCAGCAAGAC 60.385 55.000 11.47 0.00 32.29 3.01
6938 20068 0.103937 CAGCAAGACCGAGGAGATCC 59.896 60.000 0.00 0.00 0.00 3.36
6952 20082 0.191314 AGATCCTACCAGCCCCCTAC 59.809 60.000 0.00 0.00 0.00 3.18
6953 20083 0.105142 GATCCTACCAGCCCCCTACA 60.105 60.000 0.00 0.00 0.00 2.74
7098 20954 2.614057 GGTAACCAGGATGATCGCAAAG 59.386 50.000 0.00 0.00 39.69 2.77
7113 20970 0.184933 CAAAGGACACCCCCAAGACA 59.815 55.000 0.00 0.00 34.66 3.41
7116 20973 1.228154 GGACACCCCCAAGACACAC 60.228 63.158 0.00 0.00 0.00 3.82
7118 20975 0.535102 GACACCCCCAAGACACACAG 60.535 60.000 0.00 0.00 0.00 3.66
7155 21012 2.860136 GCAACAGCAAAACCTTCACTTC 59.140 45.455 0.00 0.00 0.00 3.01
7163 21020 2.896745 AACCTTCACTTCGTTACCGT 57.103 45.000 0.00 0.00 35.01 4.83
7178 21035 4.396854 CGTAGGGTTGTCGCTAGC 57.603 61.111 4.06 4.06 39.24 3.42
7189 21046 0.873743 GTCGCTAGCAGCATCTCCAC 60.874 60.000 16.45 0.00 42.58 4.02
7190 21047 1.142531 CGCTAGCAGCATCTCCACA 59.857 57.895 16.45 0.00 42.58 4.17
7196 21053 0.248565 GCAGCATCTCCACAGACTCA 59.751 55.000 0.00 0.00 0.00 3.41
7214 21071 5.189342 AGACTCACATCAGATCCACAGAATT 59.811 40.000 0.00 0.00 0.00 2.17
7228 21085 0.694771 AGAATTGGTCCTCAGCAGCA 59.305 50.000 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 44 2.119484 TAACACCAGGTTGCCTCCCG 62.119 60.000 0.00 0.00 40.73 5.14
42 46 1.751437 GATAACACCAGGTTGCCTCC 58.249 55.000 0.00 0.00 40.73 4.30
45 49 1.654023 GGCGATAACACCAGGTTGCC 61.654 60.000 0.00 0.00 40.73 4.52
125 129 1.158484 CGAGGACGCCGAGTATCTCA 61.158 60.000 0.00 0.00 34.76 3.27
161 165 4.117661 AGGAACTCGTCGAGCGCC 62.118 66.667 22.00 21.16 41.07 6.53
425 429 0.322322 ACGGCGTTATTGTTCCCAGA 59.678 50.000 6.77 0.00 0.00 3.86
427 431 1.001746 TGTACGGCGTTATTGTTCCCA 59.998 47.619 21.24 0.00 0.00 4.37
432 436 0.737019 CGGGTGTACGGCGTTATTGT 60.737 55.000 21.24 0.00 0.00 2.71
471 475 3.054655 TCCCACTTGCCCTTGAAGTATAC 60.055 47.826 0.00 0.00 32.27 1.47
578 582 1.154093 GATGAACTGGCGACGTCGA 60.154 57.895 39.74 20.18 43.02 4.20
581 585 2.809601 GCGATGAACTGGCGACGT 60.810 61.111 0.00 0.00 0.00 4.34
586 590 4.166011 GCACCGCGATGAACTGGC 62.166 66.667 3.51 0.00 0.00 4.85
630 634 1.613255 CCGTTGAGCCATTTGGTACCT 60.613 52.381 14.36 0.00 37.57 3.08
728 796 1.204704 TGTGTCGGCCTATCAACAGAG 59.795 52.381 0.00 0.00 0.00 3.35
748 816 3.103738 GTGTACGCTTGTTACGATCGAT 58.896 45.455 24.34 8.79 0.00 3.59
884 964 1.614525 ACCCGGAACTCCCTAACCC 60.615 63.158 0.73 0.00 0.00 4.11
936 1016 2.027377 CAGCTTCTTCAGGATGGTGACT 60.027 50.000 0.00 0.00 44.85 3.41
993 1073 0.738762 CACGCTCCACCATGTCAGAG 60.739 60.000 0.00 0.00 0.00 3.35
1074 1154 1.522092 CGCTATGGTGCCCTCTTCA 59.478 57.895 0.00 0.00 0.00 3.02
1092 1172 2.202987 CTCATGGAGACGGCAGCC 60.203 66.667 0.00 0.00 0.00 4.85
1109 1189 2.480419 GCACATTCTATGTCCGCATACC 59.520 50.000 0.00 0.00 42.70 2.73
1115 1195 3.670523 CGTGATAGCACATTCTATGTCCG 59.329 47.826 12.28 0.00 45.41 4.79
1124 1204 0.391130 ACACCGCGTGATAGCACATT 60.391 50.000 12.28 0.00 45.41 2.71
1129 1209 1.915093 CGTTACACCGCGTGATAGC 59.085 57.895 4.92 0.00 36.96 2.97
1168 1248 2.030893 ACGACGAATAACTGACGGACAA 60.031 45.455 0.00 0.00 0.00 3.18
1186 1266 1.068402 CAAATGACATGGCAGCAACGA 60.068 47.619 7.63 0.00 0.00 3.85
1192 1272 2.288579 ACACAAGCAAATGACATGGCAG 60.289 45.455 7.63 0.00 0.00 4.85
1490 1572 1.077858 GGGCTGCAAAGAGAGAGGG 60.078 63.158 0.50 0.00 0.00 4.30
1579 1662 4.084888 GAGCGGTTTTCGGCCACG 62.085 66.667 2.24 0.00 45.38 4.94
1580 1663 3.733960 GGAGCGGTTTTCGGCCAC 61.734 66.667 2.24 0.00 45.38 5.01
1581 1664 3.894547 GAGGAGCGGTTTTCGGCCA 62.895 63.158 2.24 0.00 45.38 5.36
1582 1665 3.125573 GAGGAGCGGTTTTCGGCC 61.126 66.667 0.00 0.00 45.38 6.13
1583 1666 1.305930 AATGAGGAGCGGTTTTCGGC 61.306 55.000 0.00 0.00 44.74 5.54
1584 1667 1.135689 CAAATGAGGAGCGGTTTTCGG 60.136 52.381 0.00 0.00 39.69 4.30
1585 1668 1.135689 CCAAATGAGGAGCGGTTTTCG 60.136 52.381 0.00 0.00 42.76 3.46
1586 1669 2.095212 GTCCAAATGAGGAGCGGTTTTC 60.095 50.000 0.00 0.00 38.64 2.29
1587 1670 1.886542 GTCCAAATGAGGAGCGGTTTT 59.113 47.619 0.00 0.00 38.64 2.43
1588 1671 1.073923 AGTCCAAATGAGGAGCGGTTT 59.926 47.619 0.00 0.00 38.64 3.27
1589 1672 0.693049 AGTCCAAATGAGGAGCGGTT 59.307 50.000 0.00 0.00 38.64 4.44
1590 1673 0.250513 GAGTCCAAATGAGGAGCGGT 59.749 55.000 0.00 0.00 38.64 5.68
1591 1674 0.539051 AGAGTCCAAATGAGGAGCGG 59.461 55.000 0.00 0.00 38.64 5.52
1592 1675 1.472376 GGAGAGTCCAAATGAGGAGCG 60.472 57.143 0.00 0.00 38.64 5.03
1593 1676 1.836802 AGGAGAGTCCAAATGAGGAGC 59.163 52.381 0.00 0.00 39.61 4.70
1594 1677 4.714308 AGTTAGGAGAGTCCAAATGAGGAG 59.286 45.833 0.00 0.00 39.61 3.69
1595 1678 4.689062 AGTTAGGAGAGTCCAAATGAGGA 58.311 43.478 0.00 0.00 39.61 3.71
1596 1679 4.141824 GGAGTTAGGAGAGTCCAAATGAGG 60.142 50.000 0.00 0.00 39.61 3.86
1597 1680 4.141824 GGGAGTTAGGAGAGTCCAAATGAG 60.142 50.000 0.00 0.00 40.31 2.90
1598 1681 3.775316 GGGAGTTAGGAGAGTCCAAATGA 59.225 47.826 0.00 0.00 40.31 2.57
1599 1682 3.777522 AGGGAGTTAGGAGAGTCCAAATG 59.222 47.826 0.00 0.00 40.31 2.32
1600 1683 4.034410 GAGGGAGTTAGGAGAGTCCAAAT 58.966 47.826 0.00 0.00 40.31 2.32
1601 1684 3.077695 AGAGGGAGTTAGGAGAGTCCAAA 59.922 47.826 0.00 0.00 40.31 3.28
1602 1685 2.655407 AGAGGGAGTTAGGAGAGTCCAA 59.345 50.000 0.00 0.00 40.31 3.53
1603 1686 2.289467 AGAGGGAGTTAGGAGAGTCCA 58.711 52.381 0.00 0.00 40.31 4.02
1604 1687 3.435457 GGTAGAGGGAGTTAGGAGAGTCC 60.435 56.522 0.00 0.00 38.24 3.85
1605 1688 3.460712 AGGTAGAGGGAGTTAGGAGAGTC 59.539 52.174 0.00 0.00 0.00 3.36
1606 1689 3.476953 AGGTAGAGGGAGTTAGGAGAGT 58.523 50.000 0.00 0.00 0.00 3.24
1607 1690 5.853572 ATAGGTAGAGGGAGTTAGGAGAG 57.146 47.826 0.00 0.00 0.00 3.20
1608 1691 7.718399 TTTATAGGTAGAGGGAGTTAGGAGA 57.282 40.000 0.00 0.00 0.00 3.71
1609 1692 8.959676 AATTTATAGGTAGAGGGAGTTAGGAG 57.040 38.462 0.00 0.00 0.00 3.69
1611 1694 8.751242 GCTAATTTATAGGTAGAGGGAGTTAGG 58.249 40.741 0.00 0.00 0.00 2.69
1612 1695 8.751242 GGCTAATTTATAGGTAGAGGGAGTTAG 58.249 40.741 0.00 0.00 0.00 2.34
1613 1696 7.677319 GGGCTAATTTATAGGTAGAGGGAGTTA 59.323 40.741 0.00 0.00 0.00 2.24
1614 1697 6.501102 GGGCTAATTTATAGGTAGAGGGAGTT 59.499 42.308 0.00 0.00 0.00 3.01
1615 1698 6.024247 GGGCTAATTTATAGGTAGAGGGAGT 58.976 44.000 0.00 0.00 0.00 3.85
1616 1699 5.425862 GGGGCTAATTTATAGGTAGAGGGAG 59.574 48.000 0.00 0.00 0.00 4.30
1617 1700 5.347978 GGGGCTAATTTATAGGTAGAGGGA 58.652 45.833 0.00 0.00 0.00 4.20
1618 1701 4.473922 GGGGGCTAATTTATAGGTAGAGGG 59.526 50.000 0.00 0.00 0.00 4.30
1619 1702 5.351405 AGGGGGCTAATTTATAGGTAGAGG 58.649 45.833 0.00 0.00 0.00 3.69
1620 1703 5.425862 GGAGGGGGCTAATTTATAGGTAGAG 59.574 48.000 0.00 0.00 0.00 2.43
1621 1704 5.347978 GGAGGGGGCTAATTTATAGGTAGA 58.652 45.833 0.00 0.00 0.00 2.59
1622 1705 4.473922 GGGAGGGGGCTAATTTATAGGTAG 59.526 50.000 0.00 0.00 0.00 3.18
1623 1706 4.441757 GGGAGGGGGCTAATTTATAGGTA 58.558 47.826 0.00 0.00 0.00 3.08
1624 1707 3.266374 GGGAGGGGGCTAATTTATAGGT 58.734 50.000 0.00 0.00 0.00 3.08
1625 1708 2.581246 GGGGAGGGGGCTAATTTATAGG 59.419 54.545 0.00 0.00 0.00 2.57
1626 1709 2.581246 GGGGGAGGGGGCTAATTTATAG 59.419 54.545 0.00 0.00 0.00 1.31
1627 1710 2.651190 GGGGGAGGGGGCTAATTTATA 58.349 52.381 0.00 0.00 0.00 0.98
1628 1711 1.467969 GGGGGAGGGGGCTAATTTAT 58.532 55.000 0.00 0.00 0.00 1.40
1629 1712 1.063654 CGGGGGAGGGGGCTAATTTA 61.064 60.000 0.00 0.00 0.00 1.40
1630 1713 2.391972 CGGGGGAGGGGGCTAATTT 61.392 63.158 0.00 0.00 0.00 1.82
1631 1714 2.776963 CGGGGGAGGGGGCTAATT 60.777 66.667 0.00 0.00 0.00 1.40
1632 1715 2.868790 TTTCGGGGGAGGGGGCTAAT 62.869 60.000 0.00 0.00 0.00 1.73
1633 1716 2.868790 ATTTCGGGGGAGGGGGCTAA 62.869 60.000 0.00 0.00 0.00 3.09
1634 1717 3.356766 ATTTCGGGGGAGGGGGCTA 62.357 63.158 0.00 0.00 0.00 3.93
1635 1718 4.779486 ATTTCGGGGGAGGGGGCT 62.779 66.667 0.00 0.00 0.00 5.19
1636 1719 4.205484 GATTTCGGGGGAGGGGGC 62.205 72.222 0.00 0.00 0.00 5.80
1637 1720 2.368329 AGATTTCGGGGGAGGGGG 60.368 66.667 0.00 0.00 0.00 5.40
1638 1721 2.808206 CGAGATTTCGGGGGAGGGG 61.808 68.421 0.00 0.00 43.05 4.79
1639 1722 2.822399 CGAGATTTCGGGGGAGGG 59.178 66.667 0.00 0.00 43.05 4.30
1647 1730 1.800681 GGGTTTGCCCGAGATTTCG 59.199 57.895 0.00 0.00 46.51 3.46
1670 1753 3.361977 GCCGGCGCAGAGGAAAAA 61.362 61.111 12.58 0.00 34.03 1.94
1691 1774 4.760047 CAGGTTGGACGGGGAGCG 62.760 72.222 0.00 0.00 0.00 5.03
1692 1775 3.637273 ACAGGTTGGACGGGGAGC 61.637 66.667 0.00 0.00 0.00 4.70
1693 1776 2.347490 CACAGGTTGGACGGGGAG 59.653 66.667 0.00 0.00 0.00 4.30
1694 1777 3.948719 GCACAGGTTGGACGGGGA 61.949 66.667 0.00 0.00 0.00 4.81
1702 1785 2.472059 ATATGGCGCGCACAGGTTG 61.472 57.895 34.42 0.00 0.00 3.77
1703 1786 2.124736 ATATGGCGCGCACAGGTT 60.125 55.556 34.42 15.27 0.00 3.50
1704 1787 2.896854 CATATGGCGCGCACAGGT 60.897 61.111 34.42 15.97 0.00 4.00
1705 1788 3.653009 CCATATGGCGCGCACAGG 61.653 66.667 34.42 21.69 0.00 4.00
2066 2149 4.219999 GGAGGAGGAGCTGCGAGC 62.220 72.222 0.00 0.47 42.84 5.03
2067 2150 3.535962 GGGAGGAGGAGCTGCGAG 61.536 72.222 0.00 0.00 0.00 5.03
2226 2309 1.075970 CCATGACGGAGGAGGAGGA 60.076 63.158 0.00 0.00 36.56 3.71
2364 2463 2.158769 AGACACAGCAGGTCAAACATGA 60.159 45.455 0.00 0.00 37.74 3.07
2382 2481 1.067250 GAGCTCCGGATGCAGAGAC 59.933 63.158 22.44 8.86 31.43 3.36
2395 2494 2.733593 ACGCACGAAACGGAGCTC 60.734 61.111 4.71 4.71 31.84 4.09
2558 10700 6.310956 ACACATTAATCATGGCAAAAATGACG 59.689 34.615 13.79 8.88 36.89 4.35
2577 10719 3.939740 ACCTCATAGGATGCACACATT 57.060 42.857 0.00 0.00 37.67 2.71
2642 10784 7.987750 TCACAAAAATACATAGTAAGCACCA 57.012 32.000 0.00 0.00 0.00 4.17
2685 10827 2.677836 CGAAGCCTAGTTTGCATGCTTA 59.322 45.455 20.33 3.93 41.97 3.09
2718 10860 4.689612 ACAGCAGAACAGGAACTAGAAA 57.310 40.909 0.00 0.00 36.02 2.52
2721 10863 7.173218 TGAAAATAACAGCAGAACAGGAACTAG 59.827 37.037 0.00 0.00 36.02 2.57
2778 10920 8.969260 ACTGAAGTATCTCAAAATATGCATGA 57.031 30.769 10.16 0.00 0.00 3.07
2845 10987 4.192429 ACTCCATAATTGCAACAAAGGC 57.808 40.909 0.00 0.00 0.00 4.35
3092 11235 2.855180 CCTAGCAAAACAGCAACATCG 58.145 47.619 0.00 0.00 36.85 3.84
3209 11352 4.015084 GGCATGGATGGATAAAGGATGAG 58.985 47.826 0.00 0.00 0.00 2.90
3217 11360 1.533187 ACAGGGGCATGGATGGATAA 58.467 50.000 0.00 0.00 0.00 1.75
3239 11382 7.452880 ACAAGCTACAGCAATCTAAAAATGA 57.547 32.000 3.70 0.00 45.16 2.57
3245 11388 8.206867 AGATATGAACAAGCTACAGCAATCTAA 58.793 33.333 3.70 0.00 45.16 2.10
3249 11392 6.459298 GCAAGATATGAACAAGCTACAGCAAT 60.459 38.462 3.70 0.00 45.16 3.56
3304 11447 8.514330 AACAAGTGAACTTAATGTAAACAGGA 57.486 30.769 0.00 0.00 34.28 3.86
3335 11478 4.018490 TGCATGGATCACTAGCAAAACAT 58.982 39.130 0.00 0.00 31.42 2.71
3390 11533 7.558444 ACCCAACAGTAAGAAGACATTTTTGTA 59.442 33.333 0.00 0.00 0.00 2.41
3396 11539 3.821033 GCACCCAACAGTAAGAAGACATT 59.179 43.478 0.00 0.00 0.00 2.71
3517 11660 6.203808 TGATAGCACTCACGTAAACATAGT 57.796 37.500 0.00 0.00 0.00 2.12
3536 11679 9.425248 AGCCAAAAAGGATCAGAAAATATGATA 57.575 29.630 0.00 0.00 41.22 2.15
3958 12106 5.902613 AGCTACATGCAATTCTAAGCAAA 57.097 34.783 0.00 0.00 44.88 3.68
4254 12403 1.544246 GGCAAGTTTAAATGAGGCCGT 59.456 47.619 0.00 0.00 0.00 5.68
4302 12451 3.920231 TGAAGCTACTCATGGCAAGAT 57.080 42.857 0.00 0.00 33.98 2.40
4378 12528 3.287222 AGCACACAACATGGTAAACACT 58.713 40.909 0.00 0.00 0.00 3.55
4417 12567 0.999406 CCTCACGATCGCAACGAAAT 59.001 50.000 16.60 0.00 39.99 2.17
4460 12611 1.546476 AGAAGACGAACGGATGAAGCT 59.454 47.619 0.00 0.00 0.00 3.74
4591 12742 4.156008 GGCTTGATAAACAGGTGTTAGGTG 59.844 45.833 0.00 0.00 37.25 4.00
4597 12748 3.356290 GGATGGCTTGATAAACAGGTGT 58.644 45.455 0.00 0.00 0.00 4.16
4624 12775 1.349067 AAGGTTAGAGGTTCGTGGCT 58.651 50.000 0.00 0.00 0.00 4.75
4629 12780 4.891260 AGGTGTTAAAGGTTAGAGGTTCG 58.109 43.478 0.00 0.00 0.00 3.95
4645 12797 3.571590 TGGTTTGCATAGGAAAGGTGTT 58.428 40.909 0.00 0.00 0.00 3.32
4799 12953 7.847848 TCTTCCACCCTTTACCAAGTATATAGT 59.152 37.037 0.00 0.00 0.00 2.12
4946 13101 5.154222 CAGGAGTTTTATTCAAAGCGAACC 58.846 41.667 0.00 0.00 36.12 3.62
4994 13149 0.539438 GGTGGTGGTGAGGCAAATGA 60.539 55.000 0.00 0.00 0.00 2.57
5143 13305 2.835764 TGGGTCAGCCTACGAGTAAAAT 59.164 45.455 0.00 0.00 34.45 1.82
5260 13424 2.362736 GGAATCCCGGTTTACAAGACC 58.637 52.381 0.00 0.00 0.00 3.85
5306 13470 4.261489 GCGATCAACGAAGGAATAGACCTA 60.261 45.833 0.00 0.00 45.77 3.08
5392 13557 1.003580 CCCATCTGCCTATAACCGCAT 59.996 52.381 0.00 0.00 33.78 4.73
5453 13619 3.738399 CGGTTGATGCGTTTTAATTCGA 58.262 40.909 4.41 0.00 0.00 3.71
5480 13646 2.625790 GAGAAGAGACCATCACGGCTAT 59.374 50.000 0.00 0.00 39.03 2.97
5511 13677 1.210967 AGAAACCGTGTTCACTTCCCA 59.789 47.619 1.53 0.00 0.00 4.37
5533 13699 7.224522 ACTCCTACTTACGTCAAACATAACT 57.775 36.000 0.00 0.00 0.00 2.24
5786 13954 3.785486 TCTCGCGTCAAAATCATCAGAT 58.215 40.909 5.77 0.00 35.53 2.90
5789 13957 1.660607 GCTCTCGCGTCAAAATCATCA 59.339 47.619 5.77 0.00 0.00 3.07
5927 14099 2.654863 TCAGAGCATCATCCGACTACA 58.345 47.619 0.00 0.00 37.82 2.74
6060 14232 2.897823 AGGTCCCACCAAGGATAGAT 57.102 50.000 0.00 0.00 41.95 1.98
6093 14265 1.003118 GCCCAATATGCGACCCTATCA 59.997 52.381 0.00 0.00 0.00 2.15
6189 17149 2.909965 TGCCCCGCAAAGACAACC 60.910 61.111 0.00 0.00 34.76 3.77
6242 18008 0.529833 ATCACGAGGCTGAGTCACTG 59.470 55.000 0.00 0.00 0.00 3.66
6257 18023 5.735427 TCACGAGAACGAAAAACAAAATCAC 59.265 36.000 0.00 0.00 42.66 3.06
6271 18156 4.493350 GCAAAATCATCATTCACGAGAACG 59.507 41.667 0.00 0.00 45.75 3.95
6405 19186 3.188048 CCATGCACACAGTTCTTCTCTTC 59.812 47.826 0.00 0.00 0.00 2.87
6477 19460 3.244630 CGGTAGTCTGATCCCTAGTAGCT 60.245 52.174 0.00 0.00 0.00 3.32
6479 19462 4.620589 TCGGTAGTCTGATCCCTAGTAG 57.379 50.000 0.00 0.00 0.00 2.57
6481 19464 4.023726 GATCGGTAGTCTGATCCCTAGT 57.976 50.000 5.93 0.00 45.64 2.57
6487 19470 9.669065 TGGAAACAAAGGATCGGTAGTCTGATC 62.669 44.444 8.11 8.11 44.79 2.92
6488 19471 5.420409 GAAACAAAGGATCGGTAGTCTGAT 58.580 41.667 0.00 0.00 41.79 2.90
6489 19472 4.322499 GGAAACAAAGGATCGGTAGTCTGA 60.322 45.833 0.00 0.00 0.00 3.27
6490 19473 3.933332 GGAAACAAAGGATCGGTAGTCTG 59.067 47.826 0.00 0.00 0.00 3.51
6502 19485 6.968070 TTCCACTAGTCTGATGGAAACAAAGG 60.968 42.308 14.32 0.00 46.93 3.11
6503 19486 5.997746 TTCCACTAGTCTGATGGAAACAAAG 59.002 40.000 14.32 0.00 46.93 2.77
6504 19487 5.935945 TTCCACTAGTCTGATGGAAACAAA 58.064 37.500 14.32 0.00 46.93 2.83
6511 19494 3.431486 GCCTTCTTCCACTAGTCTGATGG 60.431 52.174 0.00 2.50 34.58 3.51
6512 19495 3.431486 GGCCTTCTTCCACTAGTCTGATG 60.431 52.174 0.00 0.00 0.00 3.07
6515 19498 1.134965 CGGCCTTCTTCCACTAGTCTG 60.135 57.143 0.00 0.00 0.00 3.51
6516 19499 1.187087 CGGCCTTCTTCCACTAGTCT 58.813 55.000 0.00 0.00 0.00 3.24
6517 19500 0.460459 GCGGCCTTCTTCCACTAGTC 60.460 60.000 0.00 0.00 0.00 2.59
6518 19501 1.192146 TGCGGCCTTCTTCCACTAGT 61.192 55.000 0.00 0.00 0.00 2.57
6520 19503 1.596934 CTGCGGCCTTCTTCCACTA 59.403 57.895 0.00 0.00 0.00 2.74
6521 19504 2.348998 CTGCGGCCTTCTTCCACT 59.651 61.111 0.00 0.00 0.00 4.00
6522 19505 2.747855 CCTGCGGCCTTCTTCCAC 60.748 66.667 0.00 0.00 0.00 4.02
6523 19506 4.033776 CCCTGCGGCCTTCTTCCA 62.034 66.667 0.00 0.00 0.00 3.53
6528 19511 1.302993 TTGTAACCCTGCGGCCTTC 60.303 57.895 0.00 0.00 0.00 3.46
6530 19513 1.774894 TTCTTGTAACCCTGCGGCCT 61.775 55.000 0.00 0.00 0.00 5.19
6534 19517 5.331902 CAATGTTATTCTTGTAACCCTGCG 58.668 41.667 0.00 0.00 34.43 5.18
6538 19521 5.413523 ACGACCAATGTTATTCTTGTAACCC 59.586 40.000 0.00 0.00 34.43 4.11
6540 19523 6.540205 GGACGACCAATGTTATTCTTGTAAC 58.460 40.000 0.00 0.00 34.57 2.50
6542 19525 4.865925 CGGACGACCAATGTTATTCTTGTA 59.134 41.667 4.48 0.00 35.59 2.41
6543 19526 3.682858 CGGACGACCAATGTTATTCTTGT 59.317 43.478 4.48 0.00 35.59 3.16
6544 19527 3.930229 TCGGACGACCAATGTTATTCTTG 59.070 43.478 4.48 0.00 35.59 3.02
6546 19529 3.880047 TCGGACGACCAATGTTATTCT 57.120 42.857 4.48 0.00 35.59 2.40
6548 19531 4.119862 CAGATCGGACGACCAATGTTATT 58.880 43.478 4.48 0.00 35.59 1.40
6549 19532 3.492656 CCAGATCGGACGACCAATGTTAT 60.493 47.826 4.48 0.00 36.56 1.89
6550 19533 2.159156 CCAGATCGGACGACCAATGTTA 60.159 50.000 4.48 0.00 36.56 2.41
6552 19535 0.175760 CCAGATCGGACGACCAATGT 59.824 55.000 4.48 0.00 36.56 2.71
6555 19538 1.679680 GATACCAGATCGGACGACCAA 59.320 52.381 4.48 0.00 38.63 3.67
6556 19539 1.315690 GATACCAGATCGGACGACCA 58.684 55.000 4.48 0.00 38.63 4.02
6558 19541 1.536331 GAGGATACCAGATCGGACGAC 59.464 57.143 10.05 0.00 38.63 4.34
6559 19542 1.142262 TGAGGATACCAGATCGGACGA 59.858 52.381 10.05 0.00 38.63 4.20
6560 19543 1.267261 GTGAGGATACCAGATCGGACG 59.733 57.143 10.05 0.00 38.63 4.79
6562 19545 2.307768 GTGTGAGGATACCAGATCGGA 58.692 52.381 10.05 0.00 38.63 4.55
6564 19547 1.676529 ACGTGTGAGGATACCAGATCG 59.323 52.381 0.00 0.00 37.17 3.69
6565 19548 3.884091 ACTACGTGTGAGGATACCAGATC 59.116 47.826 0.00 0.00 37.17 2.75
6566 19549 3.899726 ACTACGTGTGAGGATACCAGAT 58.100 45.455 0.00 0.00 37.17 2.90
6567 19550 3.361281 ACTACGTGTGAGGATACCAGA 57.639 47.619 0.00 0.00 37.17 3.86
6569 19552 4.525487 AGAAAACTACGTGTGAGGATACCA 59.475 41.667 0.00 0.00 37.17 3.25
6570 19553 5.069501 AGAAAACTACGTGTGAGGATACC 57.930 43.478 0.00 0.00 37.17 2.73
6572 19555 6.518493 ACAAAGAAAACTACGTGTGAGGATA 58.482 36.000 0.00 0.00 0.00 2.59
6574 19557 4.761975 ACAAAGAAAACTACGTGTGAGGA 58.238 39.130 0.00 0.00 0.00 3.71
6577 19560 7.429920 GCAATTAACAAAGAAAACTACGTGTGA 59.570 33.333 0.00 0.00 0.00 3.58
6580 19563 7.908193 AGCAATTAACAAAGAAAACTACGTG 57.092 32.000 0.00 0.00 0.00 4.49
6583 19566 8.352752 AGCAAGCAATTAACAAAGAAAACTAC 57.647 30.769 0.00 0.00 0.00 2.73
6587 19570 6.820656 TGGAAGCAAGCAATTAACAAAGAAAA 59.179 30.769 0.00 0.00 0.00 2.29
6591 19574 6.036953 TGTTTGGAAGCAAGCAATTAACAAAG 59.963 34.615 0.00 0.00 0.00 2.77
6592 19575 5.877012 TGTTTGGAAGCAAGCAATTAACAAA 59.123 32.000 0.00 0.00 0.00 2.83
6594 19577 4.808364 GTGTTTGGAAGCAAGCAATTAACA 59.192 37.500 0.00 0.00 0.00 2.41
6598 19581 3.118665 ACAGTGTTTGGAAGCAAGCAATT 60.119 39.130 0.00 0.00 0.00 2.32
6600 19583 1.824230 ACAGTGTTTGGAAGCAAGCAA 59.176 42.857 0.00 0.00 0.00 3.91
6601 19584 1.473258 ACAGTGTTTGGAAGCAAGCA 58.527 45.000 0.00 0.00 0.00 3.91
6602 19585 2.195922 CAACAGTGTTTGGAAGCAAGC 58.804 47.619 5.57 0.00 0.00 4.01
6603 19586 2.195922 GCAACAGTGTTTGGAAGCAAG 58.804 47.619 5.57 0.00 0.00 4.01
6604 19587 1.547820 TGCAACAGTGTTTGGAAGCAA 59.452 42.857 13.73 1.05 31.87 3.91
6606 19589 2.195922 CTTGCAACAGTGTTTGGAAGC 58.804 47.619 18.88 14.26 44.64 3.86
6609 19592 0.100325 CGCTTGCAACAGTGTTTGGA 59.900 50.000 5.57 0.68 0.00 3.53
6612 19595 1.226945 GCCGCTTGCAACAGTGTTT 60.227 52.632 5.57 0.00 40.77 2.83
6624 19607 3.357079 CTTCAGCCGTTGCCGCTT 61.357 61.111 0.00 0.00 38.69 4.68
6630 19613 1.205064 CTCGCAACTTCAGCCGTTG 59.795 57.895 0.00 0.00 43.41 4.10
6631 19614 2.607892 GCTCGCAACTTCAGCCGTT 61.608 57.895 0.00 0.00 0.00 4.44
6632 19615 3.044305 GCTCGCAACTTCAGCCGT 61.044 61.111 0.00 0.00 0.00 5.68
6633 19616 3.020026 CTGCTCGCAACTTCAGCCG 62.020 63.158 0.00 0.00 31.68 5.52
6634 19617 1.963338 ACTGCTCGCAACTTCAGCC 60.963 57.895 0.00 0.00 31.68 4.85
6635 19618 1.206072 CACTGCTCGCAACTTCAGC 59.794 57.895 0.00 0.00 0.00 4.26
6637 19620 0.601046 CCTCACTGCTCGCAACTTCA 60.601 55.000 0.00 0.00 0.00 3.02
6638 19621 1.294659 CCCTCACTGCTCGCAACTTC 61.295 60.000 0.00 0.00 0.00 3.01
6640 19623 2.345244 CCCTCACTGCTCGCAACT 59.655 61.111 0.00 0.00 0.00 3.16
6641 19624 3.426568 GCCCTCACTGCTCGCAAC 61.427 66.667 0.00 0.00 0.00 4.17
6645 19628 2.507992 CTTCGCCCTCACTGCTCG 60.508 66.667 0.00 0.00 0.00 5.03
6646 19629 1.004440 AACTTCGCCCTCACTGCTC 60.004 57.895 0.00 0.00 0.00 4.26
6648 19631 2.970974 GCAACTTCGCCCTCACTGC 61.971 63.158 0.00 0.00 0.00 4.40
6649 19632 1.165907 TTGCAACTTCGCCCTCACTG 61.166 55.000 0.00 0.00 0.00 3.66
6650 19633 0.465460 TTTGCAACTTCGCCCTCACT 60.465 50.000 0.00 0.00 0.00 3.41
6651 19634 0.317854 GTTTGCAACTTCGCCCTCAC 60.318 55.000 0.00 0.00 0.00 3.51
6653 19636 1.082104 CGTTTGCAACTTCGCCCTC 60.082 57.895 0.00 0.00 0.00 4.30
6655 19638 2.050442 CCGTTTGCAACTTCGCCC 60.050 61.111 0.00 0.00 0.00 6.13
6656 19639 2.050442 CCCGTTTGCAACTTCGCC 60.050 61.111 0.00 0.00 0.00 5.54
6657 19640 2.050442 CCCCGTTTGCAACTTCGC 60.050 61.111 0.00 0.00 0.00 4.70
6658 19641 1.008995 CACCCCGTTTGCAACTTCG 60.009 57.895 0.00 4.73 0.00 3.79
6659 19642 0.958822 ATCACCCCGTTTGCAACTTC 59.041 50.000 0.00 0.00 0.00 3.01
6662 19645 1.372872 GCATCACCCCGTTTGCAAC 60.373 57.895 0.00 0.00 35.22 4.17
6664 19647 2.115052 AGCATCACCCCGTTTGCA 59.885 55.556 0.00 0.00 37.56 4.08
6666 19649 1.973281 AGCAGCATCACCCCGTTTG 60.973 57.895 0.00 0.00 0.00 2.93
6668 19651 2.360350 CAGCAGCATCACCCCGTT 60.360 61.111 0.00 0.00 0.00 4.44
6674 19657 2.125391 TCCTCGCAGCAGCATCAC 60.125 61.111 0.82 0.00 42.27 3.06
6675 19658 2.186125 CTCCTCGCAGCAGCATCA 59.814 61.111 0.82 0.00 42.27 3.07
6676 19659 3.270839 GCTCCTCGCAGCAGCATC 61.271 66.667 0.82 0.00 42.27 3.91
6680 19663 4.869440 CCTCGCTCCTCGCAGCAG 62.869 72.222 0.00 0.00 39.62 4.24
6693 19676 2.351336 AATTCTAGTCGCCGGCCTCG 62.351 60.000 23.46 9.46 0.00 4.63
6695 19678 1.327690 TGAATTCTAGTCGCCGGCCT 61.328 55.000 23.46 16.09 0.00 5.19
6697 19680 1.365699 TTTGAATTCTAGTCGCCGGC 58.634 50.000 19.07 19.07 0.00 6.13
6698 19681 4.332819 AGAAATTTGAATTCTAGTCGCCGG 59.667 41.667 7.05 0.00 35.43 6.13
6699 19682 5.063438 TGAGAAATTTGAATTCTAGTCGCCG 59.937 40.000 7.05 0.00 37.26 6.46
6701 19684 8.902040 ATTTGAGAAATTTGAATTCTAGTCGC 57.098 30.769 7.05 1.51 37.26 5.19
6747 19856 1.367346 TGTTGGCTGGGGTGAATCTA 58.633 50.000 0.00 0.00 0.00 1.98
6749 19858 1.106285 GATGTTGGCTGGGGTGAATC 58.894 55.000 0.00 0.00 0.00 2.52
6777 19886 5.034152 TGTGTGCTTCGATGAAAAGAAAAC 58.966 37.500 1.89 0.00 0.00 2.43
6798 19908 4.005650 CAGTTCTGTGGTCATTAGCATGT 58.994 43.478 0.00 0.00 35.16 3.21
6807 19917 4.331968 AGTTTTGTTCAGTTCTGTGGTCA 58.668 39.130 0.00 0.00 0.00 4.02
6810 19920 3.694072 TGGAGTTTTGTTCAGTTCTGTGG 59.306 43.478 0.00 0.00 0.00 4.17
6842 19972 2.272471 GTTACCTGCTGCCCCTCC 59.728 66.667 0.00 0.00 0.00 4.30
6843 19973 1.078143 CTGTTACCTGCTGCCCCTC 60.078 63.158 0.00 0.00 0.00 4.30
6845 19975 0.251165 TTTCTGTTACCTGCTGCCCC 60.251 55.000 0.00 0.00 0.00 5.80
6846 19976 1.616159 TTTTCTGTTACCTGCTGCCC 58.384 50.000 0.00 0.00 0.00 5.36
6889 20019 1.203523 TGTGTTGTTGTTGTCAAGCCC 59.796 47.619 0.00 0.00 33.97 5.19
6905 20035 1.375853 TTGCTGAAGTGCGCTTGTGT 61.376 50.000 19.04 0.00 34.61 3.72
6909 20039 1.510480 GGTCTTGCTGAAGTGCGCTT 61.510 55.000 13.41 13.41 37.71 4.68
6910 20040 1.963338 GGTCTTGCTGAAGTGCGCT 60.963 57.895 9.73 0.00 35.36 5.92
6911 20041 2.558313 GGTCTTGCTGAAGTGCGC 59.442 61.111 0.00 0.00 35.36 6.09
6913 20043 1.294659 CCTCGGTCTTGCTGAAGTGC 61.295 60.000 0.00 0.00 31.00 4.40
6914 20044 0.318441 TCCTCGGTCTTGCTGAAGTG 59.682 55.000 0.00 0.00 31.00 3.16
6915 20045 0.605589 CTCCTCGGTCTTGCTGAAGT 59.394 55.000 0.00 0.00 31.00 3.01
6916 20046 0.891373 TCTCCTCGGTCTTGCTGAAG 59.109 55.000 0.00 0.00 31.00 3.02
6919 20049 0.103937 GGATCTCCTCGGTCTTGCTG 59.896 60.000 0.00 0.00 0.00 4.41
6921 20051 1.338655 GTAGGATCTCCTCGGTCTTGC 59.661 57.143 1.00 0.00 44.77 4.01
6922 20052 1.957877 GGTAGGATCTCCTCGGTCTTG 59.042 57.143 1.00 0.00 44.77 3.02
6923 20053 1.569548 TGGTAGGATCTCCTCGGTCTT 59.430 52.381 1.00 0.00 44.77 3.01
6927 20057 1.182385 GGCTGGTAGGATCTCCTCGG 61.182 65.000 1.00 0.00 44.77 4.63
6938 20068 2.567615 GACATATGTAGGGGGCTGGTAG 59.432 54.545 8.71 0.00 0.00 3.18
6952 20082 7.783090 ACTGTGATTAGAGCTTTGACATATG 57.217 36.000 0.00 0.00 0.00 1.78
6997 20127 9.125026 CCTTTCCAGCTATACTGTGATTTTATT 57.875 33.333 0.00 0.00 45.68 1.40
6999 20129 6.542370 GCCTTTCCAGCTATACTGTGATTTTA 59.458 38.462 0.00 0.00 45.68 1.52
7001 20131 4.884164 GCCTTTCCAGCTATACTGTGATTT 59.116 41.667 0.00 0.00 45.68 2.17
7002 20132 4.080356 TGCCTTTCCAGCTATACTGTGATT 60.080 41.667 0.00 0.00 45.68 2.57
7006 20136 4.301072 TTTGCCTTTCCAGCTATACTGT 57.699 40.909 0.00 0.00 45.68 3.55
7007 20137 4.096984 CCTTTTGCCTTTCCAGCTATACTG 59.903 45.833 0.00 0.00 46.77 2.74
7008 20138 4.273318 CCTTTTGCCTTTCCAGCTATACT 58.727 43.478 0.00 0.00 0.00 2.12
7011 20141 1.827344 GCCTTTTGCCTTTCCAGCTAT 59.173 47.619 0.00 0.00 0.00 2.97
7012 20142 1.256812 GCCTTTTGCCTTTCCAGCTA 58.743 50.000 0.00 0.00 0.00 3.32
7014 20144 0.322648 ATGCCTTTTGCCTTTCCAGC 59.677 50.000 0.00 0.00 40.16 4.85
7017 20147 3.588955 CAGTTATGCCTTTTGCCTTTCC 58.411 45.455 0.00 0.00 40.16 3.13
7024 20154 3.320541 TGTGGTTCCAGTTATGCCTTTTG 59.679 43.478 0.00 0.00 0.00 2.44
7035 20165 3.496160 GGTTGTGATACTGTGGTTCCAGT 60.496 47.826 0.00 0.00 46.94 4.00
7042 20172 3.738982 TGAAGTGGTTGTGATACTGTGG 58.261 45.455 0.00 0.00 0.00 4.17
7098 20954 1.228154 GTGTGTCTTGGGGGTGTCC 60.228 63.158 0.00 0.00 0.00 4.02
7113 20970 1.237285 GCATTTGGCTCGGTCTGTGT 61.237 55.000 0.00 0.00 40.25 3.72
7116 20973 1.798735 CTGCATTTGGCTCGGTCTG 59.201 57.895 0.00 0.00 45.15 3.51
7118 20975 1.865788 TTGCTGCATTTGGCTCGGTC 61.866 55.000 1.84 0.00 45.15 4.79
7163 21020 1.254975 TGCTGCTAGCGACAACCCTA 61.255 55.000 10.77 0.00 46.26 3.53
7175 21032 1.753649 GAGTCTGTGGAGATGCTGCTA 59.246 52.381 0.00 0.00 0.00 3.49
7178 21035 1.274447 TGTGAGTCTGTGGAGATGCTG 59.726 52.381 0.00 0.00 0.00 4.41
7189 21046 3.446516 TCTGTGGATCTGATGTGAGTCTG 59.553 47.826 0.00 0.00 0.00 3.51
7190 21047 3.706183 TCTGTGGATCTGATGTGAGTCT 58.294 45.455 0.00 0.00 0.00 3.24
7196 21053 4.521146 GACCAATTCTGTGGATCTGATGT 58.479 43.478 0.00 0.00 41.65 3.06
7214 21071 2.745698 CTGTGCTGCTGAGGACCA 59.254 61.111 0.00 0.00 39.75 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.