Multiple sequence alignment - TraesCS2B01G393500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G393500 chr2B 100.000 2489 0 0 1 2489 557990657 557988169 0.000000e+00 4597.0
1 TraesCS2B01G393500 chr2B 90.064 312 31 0 132 443 559192938 559193249 2.980000e-109 405.0
2 TraesCS2B01G393500 chr2B 88.350 309 36 0 132 440 559416548 559416240 3.020000e-99 372.0
3 TraesCS2B01G393500 chr2B 85.503 338 46 2 995 1332 558284056 558284390 1.420000e-92 350.0
4 TraesCS2B01G393500 chr2B 85.583 326 44 2 132 454 559306645 559306320 3.070000e-89 339.0
5 TraesCS2B01G393500 chr2B 85.039 127 18 1 1366 1492 558289396 558289521 7.230000e-26 128.0
6 TraesCS2B01G393500 chr2B 80.508 118 16 4 1831 1944 484885646 484885760 1.590000e-12 84.2
7 TraesCS2B01G393500 chr2A 94.850 835 30 7 992 1821 619215481 619216307 0.000000e+00 1291.0
8 TraesCS2B01G393500 chr2A 93.719 812 32 6 1 801 619206204 619207007 0.000000e+00 1199.0
9 TraesCS2B01G393500 chr2A 94.499 509 20 4 1824 2327 619216346 619216851 0.000000e+00 778.0
10 TraesCS2B01G393500 chr2A 91.079 482 12 10 2020 2489 619216852 619217314 7.560000e-175 623.0
11 TraesCS2B01G393500 chr2A 89.697 330 33 1 132 461 619628001 619628329 1.060000e-113 420.0
12 TraesCS2B01G393500 chr2A 88.673 309 35 0 132 440 619765533 619765225 6.500000e-101 377.0
13 TraesCS2B01G393500 chr2A 83.902 205 24 2 790 994 619208912 619209107 1.180000e-43 187.0
14 TraesCS2B01G393500 chr2D 92.787 818 43 6 995 1807 476849416 476850222 0.000000e+00 1170.0
15 TraesCS2B01G393500 chr2D 91.484 822 27 16 1 811 476840237 476841026 0.000000e+00 1090.0
16 TraesCS2B01G393500 chr2D 83.160 481 74 6 995 1473 476913725 476914200 1.370000e-117 433.0
17 TraesCS2B01G393500 chr2D 88.788 330 37 0 132 461 477264448 477264777 2.980000e-109 405.0
18 TraesCS2B01G393500 chr2D 89.508 305 32 0 132 436 477394450 477394146 1.080000e-103 387.0
19 TraesCS2B01G393500 chr2D 74.220 481 108 13 1001 1476 55357160 55356691 1.180000e-43 187.0
20 TraesCS2B01G393500 chr2D 81.143 175 28 4 1886 2059 648259836 648259666 4.320000e-28 135.0
21 TraesCS2B01G393500 chr2D 81.250 160 26 4 1892 2049 410020479 410020636 2.600000e-25 126.0
22 TraesCS2B01G393500 chr5D 74.590 488 116 7 995 1478 506168052 506168535 9.020000e-50 207.0
23 TraesCS2B01G393500 chr4A 85.185 162 21 3 1885 2043 596458908 596458747 1.980000e-36 163.0
24 TraesCS2B01G393500 chr7B 79.476 229 30 10 1833 2044 624698906 624699134 1.990000e-31 147.0
25 TraesCS2B01G393500 chr1D 86.364 132 16 2 1893 2023 372522609 372522739 2.580000e-30 143.0
26 TraesCS2B01G393500 chr5A 82.143 168 26 4 1881 2045 608709387 608709221 9.280000e-30 141.0
27 TraesCS2B01G393500 chr6D 85.000 140 16 5 1886 2021 347703475 347703337 1.200000e-28 137.0
28 TraesCS2B01G393500 chr7A 83.784 148 18 5 1880 2022 229278259 229278405 4.320000e-28 135.0
29 TraesCS2B01G393500 chr4D 79.032 124 18 5 1832 1947 466833692 466833569 7.380000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G393500 chr2B 557988169 557990657 2488 True 4597.000000 4597 100.0000 1 2489 1 chr2B.!!$R1 2488
1 TraesCS2B01G393500 chr2A 619215481 619217314 1833 False 897.333333 1291 93.4760 992 2489 3 chr2A.!!$F3 1497
2 TraesCS2B01G393500 chr2A 619206204 619209107 2903 False 693.000000 1199 88.8105 1 994 2 chr2A.!!$F2 993
3 TraesCS2B01G393500 chr2D 476849416 476850222 806 False 1170.000000 1170 92.7870 995 1807 1 chr2D.!!$F3 812
4 TraesCS2B01G393500 chr2D 476840237 476841026 789 False 1090.000000 1090 91.4840 1 811 1 chr2D.!!$F2 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 232 0.037303 TGAAGGGCTGCTTGAGGAAG 59.963 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1746 3689 0.468226 TCGTAATCAGGGCCATGTCC 59.532 55.0 18.43 2.96 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.642071 TGAATCAGCTAAATCAAGCAAAAAC 57.358 32.000 0.00 0.00 45.30 2.43
217 232 0.037303 TGAAGGGCTGCTTGAGGAAG 59.963 55.000 0.00 0.00 0.00 3.46
421 436 1.856265 GCACCGGCTTGTCCAAGAAG 61.856 60.000 11.12 3.69 40.79 2.85
589 604 2.305853 CGCCATGGCTTCTCGATCG 61.306 63.158 33.07 9.36 39.32 3.69
590 605 1.068083 GCCATGGCTTCTCGATCGA 59.932 57.895 29.98 18.32 38.26 3.59
591 606 0.320247 GCCATGGCTTCTCGATCGAT 60.320 55.000 29.98 0.00 38.26 3.59
592 607 1.707632 CCATGGCTTCTCGATCGATC 58.292 55.000 19.78 15.68 0.00 3.69
690 711 2.359850 GATGCCAGCCGTGTTCCA 60.360 61.111 0.00 0.00 0.00 3.53
738 760 5.424757 TCCTATTGGAACTGGAATACAACG 58.575 41.667 0.00 0.00 39.87 4.10
743 765 2.423577 GAACTGGAATACAACGGTGCT 58.576 47.619 0.00 0.00 0.00 4.40
749 771 0.676782 AATACAACGGTGCTCTGCCC 60.677 55.000 0.00 0.00 0.00 5.36
778 800 1.107114 GAAGAGGACTCCGATGCTGA 58.893 55.000 0.00 0.00 0.00 4.26
824 2762 6.478344 CCTCCTTCAAAATTCTATCTCGTGAG 59.522 42.308 0.00 0.00 0.00 3.51
826 2764 7.036220 TCCTTCAAAATTCTATCTCGTGAGTC 58.964 38.462 0.00 0.00 0.00 3.36
827 2765 6.813649 CCTTCAAAATTCTATCTCGTGAGTCA 59.186 38.462 0.00 0.00 0.00 3.41
828 2766 7.331934 CCTTCAAAATTCTATCTCGTGAGTCAA 59.668 37.037 0.00 0.00 0.00 3.18
829 2767 7.818493 TCAAAATTCTATCTCGTGAGTCAAG 57.182 36.000 0.00 0.00 0.00 3.02
833 2771 4.489306 TCTATCTCGTGAGTCAAGGAGA 57.511 45.455 21.11 21.11 39.62 3.71
834 2772 4.844884 TCTATCTCGTGAGTCAAGGAGAA 58.155 43.478 22.14 13.74 38.85 2.87
835 2773 5.254115 TCTATCTCGTGAGTCAAGGAGAAA 58.746 41.667 22.14 12.27 38.85 2.52
836 2774 3.644884 TCTCGTGAGTCAAGGAGAAAC 57.355 47.619 18.15 0.00 32.92 2.78
837 2775 2.296471 TCTCGTGAGTCAAGGAGAAACC 59.704 50.000 18.15 0.00 32.92 3.27
838 2776 1.343465 TCGTGAGTCAAGGAGAAACCC 59.657 52.381 6.22 0.00 40.05 4.11
839 2777 1.070134 CGTGAGTCAAGGAGAAACCCA 59.930 52.381 0.00 0.00 40.05 4.51
840 2778 2.484770 CGTGAGTCAAGGAGAAACCCAA 60.485 50.000 0.00 0.00 40.05 4.12
841 2779 3.142174 GTGAGTCAAGGAGAAACCCAAG 58.858 50.000 0.00 0.00 40.05 3.61
842 2780 2.106511 TGAGTCAAGGAGAAACCCAAGG 59.893 50.000 0.00 0.00 40.05 3.61
843 2781 2.372172 GAGTCAAGGAGAAACCCAAGGA 59.628 50.000 0.00 0.00 40.05 3.36
850 2788 3.399305 AGGAGAAACCCAAGGAAACAGAT 59.601 43.478 0.00 0.00 40.05 2.90
859 2797 3.007635 CAAGGAAACAGATACCGGAACC 58.992 50.000 9.46 0.00 0.00 3.62
866 2804 2.233922 ACAGATACCGGAACCAACTCTG 59.766 50.000 9.46 11.17 35.82 3.35
871 2809 0.605589 CCGGAACCAACTCTGGAACC 60.606 60.000 0.00 0.48 46.92 3.62
884 2822 1.886542 CTGGAACCAAACCTACCAAGC 59.113 52.381 0.00 0.00 0.00 4.01
894 2832 1.076332 CCTACCAAGCTCCGTTTTCG 58.924 55.000 0.00 0.00 43.67 3.46
902 2840 2.835027 AGCTCCGTTTTCGTTTCTTCT 58.165 42.857 0.00 0.00 42.35 2.85
904 2842 3.626217 AGCTCCGTTTTCGTTTCTTCTTT 59.374 39.130 0.00 0.00 42.35 2.52
905 2843 3.966844 GCTCCGTTTTCGTTTCTTCTTTC 59.033 43.478 0.00 0.00 42.35 2.62
906 2844 4.260661 GCTCCGTTTTCGTTTCTTCTTTCT 60.261 41.667 0.00 0.00 42.35 2.52
907 2845 5.729732 GCTCCGTTTTCGTTTCTTCTTTCTT 60.730 40.000 0.00 0.00 42.35 2.52
912 2850 7.061326 CCGTTTTCGTTTCTTCTTTCTTTCAAA 59.939 33.333 0.00 0.00 42.35 2.69
935 2873 5.295152 ACCGATACATAAAGAACCCGATTC 58.705 41.667 0.00 0.00 37.62 2.52
954 2892 5.174035 CGATTCTTACTAGCAATCTCCAACG 59.826 44.000 0.00 0.00 0.00 4.10
955 2893 4.386867 TCTTACTAGCAATCTCCAACGG 57.613 45.455 0.00 0.00 0.00 4.44
980 2918 1.201921 CGGAAAAGAACCGCGATTCTG 60.202 52.381 18.33 0.00 43.74 3.02
1154 3092 2.909006 AGTTCAAGCTCTCCTTCCATGA 59.091 45.455 0.00 0.00 0.00 3.07
1158 3096 1.949799 AGCTCTCCTTCCATGACAGT 58.050 50.000 0.00 0.00 0.00 3.55
1236 3174 1.956869 TGTCTGACATGGTGGAGGAT 58.043 50.000 6.36 0.00 0.00 3.24
1298 3236 0.175073 AAGGCGGTCATCGAGGTAAC 59.825 55.000 0.00 0.00 42.43 2.50
1335 3273 1.153647 CGCGGCTGTGTCCATAGAA 60.154 57.895 0.00 0.00 0.00 2.10
1338 3276 1.405526 GCGGCTGTGTCCATAGAAGAA 60.406 52.381 0.00 0.00 0.00 2.52
1479 3417 1.285962 CATGTCCTTGACCCCTCCATT 59.714 52.381 0.00 0.00 0.00 3.16
1495 3433 4.590647 CCTCCATTGAGAGCTAGGTCAATA 59.409 45.833 23.18 8.31 40.64 1.90
1523 3461 0.039617 CGCCTGATTTTGTTTCGGCA 60.040 50.000 0.00 0.00 34.56 5.69
1547 3485 2.036089 GCCCACGTAGAGGAGGAATAAG 59.964 54.545 2.78 0.00 42.26 1.73
1548 3486 3.297736 CCCACGTAGAGGAGGAATAAGT 58.702 50.000 0.00 0.00 42.26 2.24
1549 3487 3.068307 CCCACGTAGAGGAGGAATAAGTG 59.932 52.174 0.00 0.00 42.26 3.16
1550 3488 3.952323 CCACGTAGAGGAGGAATAAGTGA 59.048 47.826 0.00 0.00 42.26 3.41
1551 3489 4.401519 CCACGTAGAGGAGGAATAAGTGAA 59.598 45.833 0.00 0.00 42.26 3.18
1552 3490 5.069251 CCACGTAGAGGAGGAATAAGTGAAT 59.931 44.000 0.00 0.00 42.26 2.57
1553 3491 6.264744 CCACGTAGAGGAGGAATAAGTGAATA 59.735 42.308 0.00 0.00 42.26 1.75
1554 3492 7.201884 CCACGTAGAGGAGGAATAAGTGAATAA 60.202 40.741 0.00 0.00 42.26 1.40
1599 3537 7.505248 TCATGCTATTTTACAAGCCATGGAATA 59.495 33.333 18.40 7.72 37.97 1.75
1647 3586 0.514691 CAAGAGAAGTTCTGCGTGCC 59.485 55.000 10.90 0.00 35.91 5.01
1840 3819 0.469331 TCCAGACAGTCGGACAAGGT 60.469 55.000 11.27 5.41 0.00 3.50
1887 3867 0.029567 CGCTAGAGGGATGACACGAC 59.970 60.000 0.00 0.00 0.00 4.34
1898 3878 4.712425 ACACGACGGTAGTGCGGC 62.712 66.667 19.32 0.00 42.94 6.53
1947 3927 2.034685 GGTCGTCCGGTATAGGGTTTAC 59.965 54.545 0.00 0.00 0.00 2.01
1949 3929 3.381590 GTCGTCCGGTATAGGGTTTACTT 59.618 47.826 0.00 0.00 0.00 2.24
1950 3930 4.023291 TCGTCCGGTATAGGGTTTACTTT 58.977 43.478 0.00 0.00 0.00 2.66
1951 3931 4.097892 TCGTCCGGTATAGGGTTTACTTTC 59.902 45.833 0.00 0.00 0.00 2.62
2025 4005 9.801873 ATTATGTCCAAACTTAAATGAAATCGG 57.198 29.630 0.00 0.00 31.20 4.18
2049 4029 8.369588 CGGTCATGTTTGTTTAAATTTTATCCG 58.630 33.333 0.00 0.00 0.00 4.18
2112 4096 2.030562 CCGAGTTCAACCCACGCT 59.969 61.111 0.00 0.00 0.00 5.07
2121 4105 1.176527 CAACCCACGCTCATTCCAAT 58.823 50.000 0.00 0.00 0.00 3.16
2133 4117 5.352569 CGCTCATTCCAATATAGGATGTTCC 59.647 44.000 0.00 0.00 37.56 3.62
2148 4132 6.884832 AGGATGTTCCATAAAATAGACGACA 58.115 36.000 0.00 0.00 39.61 4.35
2306 4580 0.901827 TCTTCAGCTGGAATACCGCA 59.098 50.000 15.13 0.00 39.42 5.69
2333 4607 2.029518 GCCCAGGTGCTGCAAAAC 59.970 61.111 2.77 0.00 0.00 2.43
2345 4619 2.771089 CTGCAAAACCTCTAGCAGTCA 58.229 47.619 0.00 0.00 46.92 3.41
2448 4722 8.674263 AGATTTTCTTCTTAGTATCTGCCATG 57.326 34.615 0.00 0.00 0.00 3.66
2453 4727 3.242867 TCTTAGTATCTGCCATGGAGGG 58.757 50.000 18.40 4.19 38.09 4.30
2454 4728 2.030027 TAGTATCTGCCATGGAGGGG 57.970 55.000 18.40 1.42 38.09 4.79
2455 4729 0.769776 AGTATCTGCCATGGAGGGGG 60.770 60.000 18.40 0.00 38.09 5.40
2461 4735 3.023116 CCATGGAGGGGGCCTTGA 61.023 66.667 5.56 0.00 35.67 3.02
2462 4736 2.625460 CCATGGAGGGGGCCTTGAA 61.625 63.158 5.56 0.00 35.67 2.69
2463 4737 1.622499 CATGGAGGGGGCCTTGAAT 59.378 57.895 0.84 0.00 35.67 2.57
2482 4766 8.855110 CCTTGAATCATATATATCTAGTCGCCT 58.145 37.037 0.00 0.00 0.00 5.52
2483 4767 9.676195 CTTGAATCATATATATCTAGTCGCCTG 57.324 37.037 0.00 0.00 0.00 4.85
2484 4768 8.753497 TGAATCATATATATCTAGTCGCCTGT 57.247 34.615 0.00 0.00 0.00 4.00
2486 4770 9.457110 GAATCATATATATCTAGTCGCCTGTTG 57.543 37.037 0.00 0.00 0.00 3.33
2487 4771 6.796426 TCATATATATCTAGTCGCCTGTTGC 58.204 40.000 0.00 0.00 0.00 4.17
2488 4772 6.603599 TCATATATATCTAGTCGCCTGTTGCT 59.396 38.462 0.00 0.00 38.05 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.746115 TGCTGTTTTTGCTTGATTTAGCTG 59.254 37.500 0.00 0.00 41.76 4.24
25 26 1.639298 GCTTGTAGGAAGCCGTGCTG 61.639 60.000 0.00 0.00 39.62 4.41
46 47 0.966179 TGGTGCGTCTGCTCTCTTTA 59.034 50.000 0.00 0.00 43.34 1.85
50 61 0.108424 AGATTGGTGCGTCTGCTCTC 60.108 55.000 0.00 0.00 43.34 3.20
99 114 2.262292 CTTCCCGCCCGTCGTTTA 59.738 61.111 0.00 0.00 36.19 2.01
119 134 3.818180 TCAGCGGTAAAACCCAAAACTA 58.182 40.909 0.00 0.00 33.75 2.24
412 427 2.436824 GAGCGGGCCTTCTTGGAC 60.437 66.667 0.84 0.00 45.48 4.02
589 604 0.234365 GTACGTAGCCCGAGACGATC 59.766 60.000 0.00 0.00 41.60 3.69
590 605 1.493950 CGTACGTAGCCCGAGACGAT 61.494 60.000 7.22 0.00 45.50 3.73
591 606 2.167219 CGTACGTAGCCCGAGACGA 61.167 63.158 7.22 0.00 45.50 4.20
592 607 2.167219 TCGTACGTAGCCCGAGACG 61.167 63.158 16.05 14.54 44.69 4.18
593 608 1.086634 AGTCGTACGTAGCCCGAGAC 61.087 60.000 16.05 2.39 40.70 3.36
601 616 0.979811 CCGCAAACAGTCGTACGTAG 59.020 55.000 16.05 8.83 0.00 3.51
634 649 0.966875 ATATATACGCGGACGCCCCA 60.967 55.000 12.47 0.00 45.53 4.96
690 711 1.541379 GGTAAACCCCGCAACAGAAT 58.459 50.000 0.00 0.00 0.00 2.40
738 760 1.401905 CGATAAAAAGGGCAGAGCACC 59.598 52.381 0.00 0.00 28.43 5.01
743 765 3.370527 CCTCTTCCGATAAAAAGGGCAGA 60.371 47.826 0.00 0.00 0.00 4.26
778 800 3.063704 TGGGGCGTCGTATCGTGT 61.064 61.111 0.00 0.00 0.00 4.49
824 2762 2.951229 TCCTTGGGTTTCTCCTTGAC 57.049 50.000 0.00 0.00 36.25 3.18
826 2764 3.295973 TGTTTCCTTGGGTTTCTCCTTG 58.704 45.455 0.00 0.00 36.25 3.61
827 2765 3.204382 TCTGTTTCCTTGGGTTTCTCCTT 59.796 43.478 0.00 0.00 36.25 3.36
828 2766 2.783510 TCTGTTTCCTTGGGTTTCTCCT 59.216 45.455 0.00 0.00 36.25 3.69
829 2767 3.223674 TCTGTTTCCTTGGGTTTCTCC 57.776 47.619 0.00 0.00 0.00 3.71
833 2771 3.418047 CGGTATCTGTTTCCTTGGGTTT 58.582 45.455 0.00 0.00 0.00 3.27
834 2772 2.290705 CCGGTATCTGTTTCCTTGGGTT 60.291 50.000 0.00 0.00 0.00 4.11
835 2773 1.280998 CCGGTATCTGTTTCCTTGGGT 59.719 52.381 0.00 0.00 0.00 4.51
836 2774 1.557832 TCCGGTATCTGTTTCCTTGGG 59.442 52.381 0.00 0.00 0.00 4.12
837 2775 3.007635 GTTCCGGTATCTGTTTCCTTGG 58.992 50.000 0.00 0.00 0.00 3.61
838 2776 3.007635 GGTTCCGGTATCTGTTTCCTTG 58.992 50.000 0.00 0.00 0.00 3.61
839 2777 2.640826 TGGTTCCGGTATCTGTTTCCTT 59.359 45.455 0.00 0.00 0.00 3.36
840 2778 2.262637 TGGTTCCGGTATCTGTTTCCT 58.737 47.619 0.00 0.00 0.00 3.36
841 2779 2.745821 GTTGGTTCCGGTATCTGTTTCC 59.254 50.000 0.00 0.00 0.00 3.13
842 2780 3.671716 AGTTGGTTCCGGTATCTGTTTC 58.328 45.455 0.00 0.00 0.00 2.78
843 2781 3.326880 AGAGTTGGTTCCGGTATCTGTTT 59.673 43.478 0.00 0.00 0.00 2.83
850 2788 1.345415 GTTCCAGAGTTGGTTCCGGTA 59.655 52.381 0.00 0.00 45.26 4.02
859 2797 3.146847 GGTAGGTTTGGTTCCAGAGTTG 58.853 50.000 0.00 0.00 0.00 3.16
866 2804 2.160205 GAGCTTGGTAGGTTTGGTTCC 58.840 52.381 0.00 0.00 30.79 3.62
871 2809 1.892209 AACGGAGCTTGGTAGGTTTG 58.108 50.000 0.00 0.00 30.79 2.93
884 2822 5.405331 AGAAAGAAGAAACGAAAACGGAG 57.595 39.130 0.00 0.00 0.00 4.63
894 2832 8.126700 TGTATCGGTTTGAAAGAAAGAAGAAAC 58.873 33.333 0.00 0.00 0.00 2.78
902 2840 9.887406 GTTCTTTATGTATCGGTTTGAAAGAAA 57.113 29.630 8.10 0.00 40.89 2.52
904 2842 7.120138 GGGTTCTTTATGTATCGGTTTGAAAGA 59.880 37.037 0.00 0.00 31.46 2.52
905 2843 7.248437 GGGTTCTTTATGTATCGGTTTGAAAG 58.752 38.462 0.00 0.00 0.00 2.62
906 2844 6.128227 CGGGTTCTTTATGTATCGGTTTGAAA 60.128 38.462 0.00 0.00 0.00 2.69
907 2845 5.352016 CGGGTTCTTTATGTATCGGTTTGAA 59.648 40.000 0.00 0.00 0.00 2.69
912 2850 4.950205 ATCGGGTTCTTTATGTATCGGT 57.050 40.909 0.00 0.00 0.00 4.69
935 2873 4.386867 TCCGTTGGAGATTGCTAGTAAG 57.613 45.455 0.00 0.00 0.00 2.34
936 2874 4.404394 TGATCCGTTGGAGATTGCTAGTAA 59.596 41.667 0.00 0.00 34.05 2.24
939 2877 3.126831 GTGATCCGTTGGAGATTGCTAG 58.873 50.000 0.00 0.00 34.05 3.42
980 2918 6.641062 CACATAGAAAATCGATCGAGAAACC 58.359 40.000 23.84 10.94 0.00 3.27
1154 3092 2.214181 GAGGATGGCGACGACACTGT 62.214 60.000 4.98 0.00 0.00 3.55
1158 3096 1.215382 CTTGAGGATGGCGACGACA 59.785 57.895 5.51 5.51 0.00 4.35
1195 3133 0.601057 TCGGCTTGATCACTGAACGA 59.399 50.000 0.00 3.29 0.00 3.85
1236 3174 3.983229 TGGCAAGCCAGATTCATCA 57.017 47.368 10.24 0.00 41.89 3.07
1298 3236 2.695314 GCTATGGTGCCTTCTTCGG 58.305 57.895 0.00 0.00 0.00 4.30
1335 3273 7.696992 ATTACAACCACCGAATAACATTTCT 57.303 32.000 0.00 0.00 0.00 2.52
1338 3276 7.887381 TGAAATTACAACCACCGAATAACATT 58.113 30.769 0.00 0.00 0.00 2.71
1479 3417 4.098044 CGTCCTTTATTGACCTAGCTCTCA 59.902 45.833 0.00 0.00 0.00 3.27
1495 3433 1.535462 CAAAATCAGGCGTCGTCCTTT 59.465 47.619 5.60 0.00 33.25 3.11
1523 3461 1.762460 CCTCCTCTACGTGGGCCAT 60.762 63.158 10.70 0.00 0.00 4.40
1552 3490 9.967346 GCATGAAACTAGTATGAGACTATGTTA 57.033 33.333 8.08 0.00 39.98 2.41
1553 3491 8.700051 AGCATGAAACTAGTATGAGACTATGTT 58.300 33.333 8.08 0.00 39.98 2.71
1554 3492 8.243961 AGCATGAAACTAGTATGAGACTATGT 57.756 34.615 8.08 0.00 39.98 2.29
1647 3586 5.982890 AATTACCCAAAAGGATGACTGTG 57.017 39.130 0.00 0.00 39.89 3.66
1746 3689 0.468226 TCGTAATCAGGGCCATGTCC 59.532 55.000 18.43 2.96 0.00 4.02
1817 3760 1.733399 GTCCGACTGTCTGGAACGC 60.733 63.158 18.32 7.23 35.67 4.84
1821 3764 0.469331 ACCTTGTCCGACTGTCTGGA 60.469 55.000 14.47 14.47 0.00 3.86
1912 3892 2.181021 GACCACCTCGTAGGCGTG 59.819 66.667 1.36 0.00 39.63 5.34
2008 3988 8.977505 CAAACATGACCGATTTCATTTAAGTTT 58.022 29.630 0.00 0.00 33.74 2.66
2014 3994 8.879342 TTAAACAAACATGACCGATTTCATTT 57.121 26.923 0.00 0.00 33.74 2.32
2025 4005 9.198837 ACCGGATAAAATTTAAACAAACATGAC 57.801 29.630 9.46 0.00 0.00 3.06
2049 4029 9.859692 GCGTAACAAGATAGATATAAACAAACC 57.140 33.333 0.00 0.00 0.00 3.27
2059 4039 5.666462 TGGCTTTGCGTAACAAGATAGATA 58.334 37.500 0.00 0.00 40.06 1.98
2133 4117 8.526218 ACTGCTATCATGTCGTCTATTTTATG 57.474 34.615 0.00 0.00 0.00 1.90
2148 4132 7.552687 TCGTTTTAATTCCTGAACTGCTATCAT 59.447 33.333 0.00 0.00 0.00 2.45
2306 4580 1.003355 CACCTGGGCGTCAATGAGT 60.003 57.895 0.00 0.00 0.00 3.41
2333 4607 1.859302 ACCTCCTTGACTGCTAGAGG 58.141 55.000 2.85 2.85 34.74 3.69
2345 4619 3.181454 CCTGTGTCTGTTGTTACCTCCTT 60.181 47.826 0.00 0.00 0.00 3.36
2448 4722 1.149101 TATGATTCAAGGCCCCCTCC 58.851 55.000 0.00 0.00 30.89 4.30
2453 4727 8.085296 CGACTAGATATATATGATTCAAGGCCC 58.915 40.741 0.00 0.00 0.00 5.80
2454 4728 7.596995 GCGACTAGATATATATGATTCAAGGCC 59.403 40.741 0.00 0.00 0.00 5.19
2455 4729 7.596995 GGCGACTAGATATATATGATTCAAGGC 59.403 40.741 0.00 0.00 0.00 4.35
2456 4730 8.855110 AGGCGACTAGATATATATGATTCAAGG 58.145 37.037 0.00 0.00 40.61 3.61
2457 4731 9.676195 CAGGCGACTAGATATATATGATTCAAG 57.324 37.037 0.00 0.00 40.21 3.02
2458 4732 9.190317 ACAGGCGACTAGATATATATGATTCAA 57.810 33.333 0.00 0.00 40.21 2.69
2459 4733 8.753497 ACAGGCGACTAGATATATATGATTCA 57.247 34.615 0.00 0.00 40.21 2.57
2461 4735 7.923344 GCAACAGGCGACTAGATATATATGATT 59.077 37.037 0.00 0.00 40.21 2.57
2462 4736 7.429633 GCAACAGGCGACTAGATATATATGAT 58.570 38.462 0.00 0.00 40.21 2.45
2463 4737 6.796426 GCAACAGGCGACTAGATATATATGA 58.204 40.000 0.00 0.00 40.21 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.