Multiple sequence alignment - TraesCS2B01G392600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G392600 chr2B 100.000 2501 0 0 574 3074 556847855 556845355 0.000000e+00 4619.0
1 TraesCS2B01G392600 chr2B 86.301 1022 135 3 1058 2075 556981913 556980893 0.000000e+00 1107.0
2 TraesCS2B01G392600 chr2B 100.000 263 0 0 1 263 556848428 556848166 1.280000e-133 486.0
3 TraesCS2B01G392600 chr2B 81.413 538 81 15 2231 2757 59649153 59648624 3.660000e-114 422.0
4 TraesCS2B01G392600 chr2B 92.857 98 5 1 1 96 359304573 359304670 1.150000e-29 141.0
5 TraesCS2B01G392600 chr2D 94.572 1179 57 4 1005 2177 476039775 476038598 0.000000e+00 1816.0
6 TraesCS2B01G392600 chr2D 85.378 1019 144 3 1061 2075 476260815 476259798 0.000000e+00 1051.0
7 TraesCS2B01G392600 chr2D 80.764 811 148 6 1263 2065 16492716 16491906 7.240000e-176 627.0
8 TraesCS2B01G392600 chr2D 85.174 317 39 5 2762 3074 648396802 648396490 4.950000e-83 318.0
9 TraesCS2B01G392600 chr2D 86.111 180 14 3 1 178 635846900 635846730 1.880000e-42 183.0
10 TraesCS2B01G392600 chr2A 94.211 1192 62 5 1005 2190 617956367 617955177 0.000000e+00 1812.0
11 TraesCS2B01G392600 chr2A 85.628 995 138 3 1085 2075 618041652 618040659 0.000000e+00 1040.0
12 TraesCS2B01G392600 chr2A 80.470 553 53 19 621 1128 617972031 617971489 3.740000e-99 372.0
13 TraesCS2B01G392600 chr3D 82.528 973 158 11 1109 2075 8381257 8382223 0.000000e+00 845.0
14 TraesCS2B01G392600 chr3D 86.520 319 37 5 2762 3074 375703791 375704109 2.270000e-91 346.0
15 TraesCS2B01G392600 chr3D 85.761 309 43 1 2762 3069 587704458 587704766 2.960000e-85 326.0
16 TraesCS2B01G392600 chr3D 91.837 98 6 1 1 96 351091829 351091732 5.350000e-28 135.0
17 TraesCS2B01G392600 chr3A 82.116 945 163 6 1133 2075 12491855 12490915 0.000000e+00 804.0
18 TraesCS2B01G392600 chr3A 81.869 535 86 9 2229 2757 717908286 717908815 1.010000e-119 440.0
19 TraesCS2B01G392600 chr4D 82.892 567 84 10 2195 2757 502041745 502041188 5.920000e-137 497.0
20 TraesCS2B01G392600 chr5A 81.898 569 102 1 2190 2757 684694424 684693856 2.140000e-131 479.0
21 TraesCS2B01G392600 chr5B 82.231 529 81 11 2224 2746 472531811 472531290 7.820000e-121 444.0
22 TraesCS2B01G392600 chr5D 81.716 536 86 12 2227 2757 312122242 312121714 1.310000e-118 436.0
23 TraesCS2B01G392600 chr5D 84.830 323 43 3 2757 3073 223295273 223295595 1.380000e-83 320.0
24 TraesCS2B01G392600 chr5D 84.830 323 42 3 2757 3073 223234370 223234691 4.950000e-83 318.0
25 TraesCS2B01G392600 chr5D 92.857 98 5 1 1 96 295551329 295551232 1.150000e-29 141.0
26 TraesCS2B01G392600 chr5D 83.951 81 11 1 674 752 393558121 393558201 3.290000e-10 76.8
27 TraesCS2B01G392600 chr7A 81.273 534 87 13 2231 2757 732866007 732865480 1.320000e-113 420.0
28 TraesCS2B01G392600 chr3B 81.333 525 81 14 2230 2742 74811175 74811694 7.930000e-111 411.0
29 TraesCS2B01G392600 chr3B 85.079 315 41 4 2762 3071 443766695 443767008 1.780000e-82 316.0
30 TraesCS2B01G392600 chr4B 80.510 549 80 21 2229 2757 576395290 576394749 2.220000e-106 396.0
31 TraesCS2B01G392600 chr6D 85.580 319 35 5 2762 3073 37734961 37734647 1.060000e-84 324.0
32 TraesCS2B01G392600 chr6D 85.714 315 34 5 2762 3069 134685140 134684830 3.820000e-84 322.0
33 TraesCS2B01G392600 chr1D 84.132 334 42 5 2748 3074 361190716 361190387 2.300000e-81 313.0
34 TraesCS2B01G392600 chr1D 81.560 282 21 14 1 259 453794324 453794051 1.450000e-48 204.0
35 TraesCS2B01G392600 chr4A 84.672 274 19 15 1 259 735071409 735071674 5.090000e-63 252.0
36 TraesCS2B01G392600 chr7B 83.594 256 28 5 1 250 44585824 44585577 8.570000e-56 228.0
37 TraesCS2B01G392600 chr6B 81.139 281 23 10 1 259 49668573 49668301 6.720000e-47 198.0
38 TraesCS2B01G392600 chr6B 85.976 164 13 8 1 162 634328836 634328991 1.900000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G392600 chr2B 556845355 556848428 3073 True 2552.5 4619 100.000 1 3074 2 chr2B.!!$R3 3073
1 TraesCS2B01G392600 chr2B 556980893 556981913 1020 True 1107.0 1107 86.301 1058 2075 1 chr2B.!!$R2 1017
2 TraesCS2B01G392600 chr2B 59648624 59649153 529 True 422.0 422 81.413 2231 2757 1 chr2B.!!$R1 526
3 TraesCS2B01G392600 chr2D 476038598 476039775 1177 True 1816.0 1816 94.572 1005 2177 1 chr2D.!!$R2 1172
4 TraesCS2B01G392600 chr2D 476259798 476260815 1017 True 1051.0 1051 85.378 1061 2075 1 chr2D.!!$R3 1014
5 TraesCS2B01G392600 chr2D 16491906 16492716 810 True 627.0 627 80.764 1263 2065 1 chr2D.!!$R1 802
6 TraesCS2B01G392600 chr2A 617955177 617956367 1190 True 1812.0 1812 94.211 1005 2190 1 chr2A.!!$R1 1185
7 TraesCS2B01G392600 chr2A 618040659 618041652 993 True 1040.0 1040 85.628 1085 2075 1 chr2A.!!$R3 990
8 TraesCS2B01G392600 chr2A 617971489 617972031 542 True 372.0 372 80.470 621 1128 1 chr2A.!!$R2 507
9 TraesCS2B01G392600 chr3D 8381257 8382223 966 False 845.0 845 82.528 1109 2075 1 chr3D.!!$F1 966
10 TraesCS2B01G392600 chr3A 12490915 12491855 940 True 804.0 804 82.116 1133 2075 1 chr3A.!!$R1 942
11 TraesCS2B01G392600 chr3A 717908286 717908815 529 False 440.0 440 81.869 2229 2757 1 chr3A.!!$F1 528
12 TraesCS2B01G392600 chr4D 502041188 502041745 557 True 497.0 497 82.892 2195 2757 1 chr4D.!!$R1 562
13 TraesCS2B01G392600 chr5A 684693856 684694424 568 True 479.0 479 81.898 2190 2757 1 chr5A.!!$R1 567
14 TraesCS2B01G392600 chr5B 472531290 472531811 521 True 444.0 444 82.231 2224 2746 1 chr5B.!!$R1 522
15 TraesCS2B01G392600 chr5D 312121714 312122242 528 True 436.0 436 81.716 2227 2757 1 chr5D.!!$R2 530
16 TraesCS2B01G392600 chr7A 732865480 732866007 527 True 420.0 420 81.273 2231 2757 1 chr7A.!!$R1 526
17 TraesCS2B01G392600 chr3B 74811175 74811694 519 False 411.0 411 81.333 2230 2742 1 chr3B.!!$F1 512
18 TraesCS2B01G392600 chr4B 576394749 576395290 541 True 396.0 396 80.510 2229 2757 1 chr4B.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.029567 CACAGATCCTAGACGTCGGC 59.970 60.0 10.46 0.0 0.0 5.54 F
615 616 0.328258 ACTCCGACCCCTTTTCATGG 59.672 55.0 0.00 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1029 1069 1.123861 TGCAGAGAGAGGCTGTGGTT 61.124 55.0 0.00 0.0 38.29 3.67 R
2372 2448 0.102300 CGGATCCGAGTGTGTGCATA 59.898 55.0 30.62 0.0 42.83 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.278513 CCGACCCCCACTGCCAAA 62.279 66.667 0.00 0.00 0.00 3.28
38 39 2.035626 CGACCCCCACTGCCAAAT 59.964 61.111 0.00 0.00 0.00 2.32
39 40 2.046285 CGACCCCCACTGCCAAATC 61.046 63.158 0.00 0.00 0.00 2.17
40 41 1.682344 GACCCCCACTGCCAAATCC 60.682 63.158 0.00 0.00 0.00 3.01
41 42 2.755469 CCCCCACTGCCAAATCCG 60.755 66.667 0.00 0.00 0.00 4.18
42 43 2.755469 CCCCACTGCCAAATCCGG 60.755 66.667 0.00 0.00 0.00 5.14
83 84 4.821589 GCGCCACCTCCCGAGAAG 62.822 72.222 0.00 0.00 0.00 2.85
84 85 4.148825 CGCCACCTCCCGAGAAGG 62.149 72.222 0.00 0.00 40.63 3.46
123 124 4.760047 ACCCGCCGCACACAGATC 62.760 66.667 0.00 0.00 0.00 2.75
125 126 4.457496 CCGCCGCACACAGATCCT 62.457 66.667 0.00 0.00 0.00 3.24
126 127 2.494445 CGCCGCACACAGATCCTA 59.506 61.111 0.00 0.00 0.00 2.94
127 128 1.589993 CGCCGCACACAGATCCTAG 60.590 63.158 0.00 0.00 0.00 3.02
128 129 1.816537 GCCGCACACAGATCCTAGA 59.183 57.895 0.00 0.00 0.00 2.43
129 130 0.528684 GCCGCACACAGATCCTAGAC 60.529 60.000 0.00 0.00 0.00 2.59
130 131 0.248661 CCGCACACAGATCCTAGACG 60.249 60.000 0.00 0.00 0.00 4.18
131 132 0.452184 CGCACACAGATCCTAGACGT 59.548 55.000 0.00 0.00 0.00 4.34
132 133 1.532090 CGCACACAGATCCTAGACGTC 60.532 57.143 7.70 7.70 0.00 4.34
133 134 1.532090 GCACACAGATCCTAGACGTCG 60.532 57.143 10.46 0.00 0.00 5.12
134 135 1.064208 CACACAGATCCTAGACGTCGG 59.936 57.143 10.46 6.53 0.00 4.79
135 136 0.029567 CACAGATCCTAGACGTCGGC 59.970 60.000 10.46 0.00 0.00 5.54
136 137 1.280142 CAGATCCTAGACGTCGGCG 59.720 63.158 8.42 8.42 44.93 6.46
137 138 2.051166 GATCCTAGACGTCGGCGC 60.051 66.667 10.50 0.00 42.83 6.53
138 139 3.858632 GATCCTAGACGTCGGCGCG 62.859 68.421 10.50 19.04 42.83 6.86
203 204 4.812476 CCATCGCCACCGCTCGAA 62.812 66.667 0.00 0.00 38.28 3.71
204 205 3.257561 CATCGCCACCGCTCGAAG 61.258 66.667 0.00 0.00 38.28 3.79
205 206 3.449227 ATCGCCACCGCTCGAAGA 61.449 61.111 0.00 0.00 38.28 2.87
206 207 3.701604 ATCGCCACCGCTCGAAGAC 62.702 63.158 0.00 0.00 38.28 3.01
239 240 4.767255 GCACCACGAGCAGAGGGG 62.767 72.222 0.00 0.00 37.04 4.79
240 241 4.087892 CACCACGAGCAGAGGGGG 62.088 72.222 0.00 0.00 34.66 5.40
241 242 4.316823 ACCACGAGCAGAGGGGGA 62.317 66.667 0.00 0.00 34.66 4.81
242 243 3.003173 CCACGAGCAGAGGGGGAA 61.003 66.667 0.00 0.00 0.00 3.97
243 244 2.592993 CCACGAGCAGAGGGGGAAA 61.593 63.158 0.00 0.00 0.00 3.13
244 245 1.078848 CACGAGCAGAGGGGGAAAG 60.079 63.158 0.00 0.00 0.00 2.62
245 246 2.294078 ACGAGCAGAGGGGGAAAGG 61.294 63.158 0.00 0.00 0.00 3.11
246 247 2.273776 GAGCAGAGGGGGAAAGGC 59.726 66.667 0.00 0.00 0.00 4.35
247 248 3.342477 AGCAGAGGGGGAAAGGCC 61.342 66.667 0.00 0.00 0.00 5.19
590 591 2.505982 GCGGGCCAGAGAGCATAA 59.494 61.111 7.23 0.00 0.00 1.90
591 592 1.153168 GCGGGCCAGAGAGCATAAA 60.153 57.895 7.23 0.00 0.00 1.40
592 593 0.536006 GCGGGCCAGAGAGCATAAAT 60.536 55.000 7.23 0.00 0.00 1.40
593 594 1.972872 CGGGCCAGAGAGCATAAATT 58.027 50.000 4.39 0.00 0.00 1.82
594 595 2.301346 CGGGCCAGAGAGCATAAATTT 58.699 47.619 4.39 0.00 0.00 1.82
595 596 2.689983 CGGGCCAGAGAGCATAAATTTT 59.310 45.455 4.39 0.00 0.00 1.82
596 597 3.882888 CGGGCCAGAGAGCATAAATTTTA 59.117 43.478 4.39 0.00 0.00 1.52
597 598 4.261197 CGGGCCAGAGAGCATAAATTTTAC 60.261 45.833 4.39 0.00 0.00 2.01
598 599 4.889995 GGGCCAGAGAGCATAAATTTTACT 59.110 41.667 4.39 0.00 0.00 2.24
599 600 5.009110 GGGCCAGAGAGCATAAATTTTACTC 59.991 44.000 4.39 1.48 0.00 2.59
600 601 5.009110 GGCCAGAGAGCATAAATTTTACTCC 59.991 44.000 0.00 0.00 0.00 3.85
601 602 5.277538 GCCAGAGAGCATAAATTTTACTCCG 60.278 44.000 0.00 0.00 0.00 4.63
602 603 6.049149 CCAGAGAGCATAAATTTTACTCCGA 58.951 40.000 0.00 0.00 0.00 4.55
603 604 6.018669 CCAGAGAGCATAAATTTTACTCCGAC 60.019 42.308 0.00 0.00 0.00 4.79
604 605 6.018669 CAGAGAGCATAAATTTTACTCCGACC 60.019 42.308 0.00 0.00 0.00 4.79
605 606 5.123936 AGAGCATAAATTTTACTCCGACCC 58.876 41.667 0.00 0.00 0.00 4.46
606 607 4.204799 AGCATAAATTTTACTCCGACCCC 58.795 43.478 0.00 0.00 0.00 4.95
607 608 4.079958 AGCATAAATTTTACTCCGACCCCT 60.080 41.667 0.00 0.00 0.00 4.79
608 609 4.643334 GCATAAATTTTACTCCGACCCCTT 59.357 41.667 0.00 0.00 0.00 3.95
609 610 5.126545 GCATAAATTTTACTCCGACCCCTTT 59.873 40.000 0.00 0.00 0.00 3.11
610 611 6.350696 GCATAAATTTTACTCCGACCCCTTTT 60.351 38.462 0.00 0.00 0.00 2.27
611 612 5.717078 AAATTTTACTCCGACCCCTTTTC 57.283 39.130 0.00 0.00 0.00 2.29
612 613 3.860968 TTTTACTCCGACCCCTTTTCA 57.139 42.857 0.00 0.00 0.00 2.69
613 614 4.376225 TTTTACTCCGACCCCTTTTCAT 57.624 40.909 0.00 0.00 0.00 2.57
614 615 3.343941 TTACTCCGACCCCTTTTCATG 57.656 47.619 0.00 0.00 0.00 3.07
615 616 0.328258 ACTCCGACCCCTTTTCATGG 59.672 55.000 0.00 0.00 0.00 3.66
616 617 0.618458 CTCCGACCCCTTTTCATGGA 59.382 55.000 0.00 0.00 0.00 3.41
617 618 0.618458 TCCGACCCCTTTTCATGGAG 59.382 55.000 0.00 0.00 0.00 3.86
618 619 0.328258 CCGACCCCTTTTCATGGAGT 59.672 55.000 0.00 0.00 0.00 3.85
619 620 1.557832 CCGACCCCTTTTCATGGAGTA 59.442 52.381 0.00 0.00 0.00 2.59
628 629 8.440771 ACCCCTTTTCATGGAGTATATTTAGAG 58.559 37.037 0.00 0.00 0.00 2.43
639 640 9.094578 TGGAGTATATTTAGAGAGAAGATTGGG 57.905 37.037 0.00 0.00 0.00 4.12
650 651 5.451354 AGAGAAGATTGGGTAGAGGAGTAC 58.549 45.833 0.00 0.00 0.00 2.73
652 653 5.590818 AGAAGATTGGGTAGAGGAGTACAA 58.409 41.667 0.00 0.00 0.00 2.41
653 654 5.659079 AGAAGATTGGGTAGAGGAGTACAAG 59.341 44.000 0.00 0.00 0.00 3.16
659 668 4.460382 TGGGTAGAGGAGTACAAGTTTACG 59.540 45.833 0.00 0.00 0.00 3.18
661 670 3.589495 AGAGGAGTACAAGTTTACGGC 57.411 47.619 0.00 0.00 0.00 5.68
673 682 3.454375 AGTTTACGGCGGATAAGTGATG 58.546 45.455 13.24 0.00 0.00 3.07
682 692 2.772287 GGATAAGTGATGGCTAGGTGC 58.228 52.381 0.00 0.00 41.94 5.01
709 719 8.352942 CAGTTAGTGGAGTAAAGCAGAAATTTT 58.647 33.333 0.00 0.00 0.00 1.82
710 720 9.569122 AGTTAGTGGAGTAAAGCAGAAATTTTA 57.431 29.630 0.00 0.00 0.00 1.52
711 721 9.608617 GTTAGTGGAGTAAAGCAGAAATTTTAC 57.391 33.333 0.00 0.19 0.00 2.01
712 722 9.569122 TTAGTGGAGTAAAGCAGAAATTTTACT 57.431 29.630 8.82 8.82 41.34 2.24
714 724 8.568794 AGTGGAGTAAAGCAGAAATTTTACTTC 58.431 33.333 10.03 8.98 39.48 3.01
715 725 8.349983 GTGGAGTAAAGCAGAAATTTTACTTCA 58.650 33.333 11.96 11.96 40.95 3.02
716 726 8.349983 TGGAGTAAAGCAGAAATTTTACTTCAC 58.650 33.333 11.96 7.02 39.34 3.18
717 727 8.349983 GGAGTAAAGCAGAAATTTTACTTCACA 58.650 33.333 10.03 0.00 39.48 3.58
718 728 9.730420 GAGTAAAGCAGAAATTTTACTTCACAA 57.270 29.630 10.03 0.00 39.48 3.33
731 741 8.449251 TTTTACTTCACAAACCGGTTATAAGT 57.551 30.769 22.60 25.06 0.00 2.24
736 746 4.865925 TCACAAACCGGTTATAAGTGATCG 59.134 41.667 27.03 14.83 30.43 3.69
752 762 4.163458 AGTGATCGGTTAGAAATGCCCTTA 59.837 41.667 0.00 0.00 0.00 2.69
803 813 2.550830 AGTTCAGGCAAACTCGACAT 57.449 45.000 0.00 0.00 34.37 3.06
804 814 2.417719 AGTTCAGGCAAACTCGACATC 58.582 47.619 0.00 0.00 34.37 3.06
806 816 2.744202 GTTCAGGCAAACTCGACATCAT 59.256 45.455 0.00 0.00 0.00 2.45
896 921 3.059166 AGCCACATTTTCGTTTGCATTC 58.941 40.909 0.00 0.00 0.00 2.67
948 980 6.772664 CGCGAACGTTTTGTTTATTGTTTAAG 59.227 34.615 0.00 0.00 42.09 1.85
949 981 6.563547 GCGAACGTTTTGTTTATTGTTTAAGC 59.436 34.615 0.46 0.00 42.09 3.09
959 991 5.570234 TTATTGTTTAAGCCACCCGATTC 57.430 39.130 0.00 0.00 0.00 2.52
963 995 3.829601 TGTTTAAGCCACCCGATTCATTT 59.170 39.130 0.00 0.00 0.00 2.32
966 998 1.680338 AGCCACCCGATTCATTTAGC 58.320 50.000 0.00 0.00 0.00 3.09
967 999 1.212935 AGCCACCCGATTCATTTAGCT 59.787 47.619 0.00 0.00 0.00 3.32
971 1003 3.560068 CCACCCGATTCATTTAGCTGTAC 59.440 47.826 0.00 0.00 0.00 2.90
981 1013 6.614694 TCATTTAGCTGTACCCTTCAGTTA 57.385 37.500 0.00 0.00 35.60 2.24
982 1014 7.195374 TCATTTAGCTGTACCCTTCAGTTAT 57.805 36.000 0.00 0.00 35.60 1.89
983 1015 8.313944 TCATTTAGCTGTACCCTTCAGTTATA 57.686 34.615 0.00 0.00 35.60 0.98
984 1016 8.202137 TCATTTAGCTGTACCCTTCAGTTATAC 58.798 37.037 0.00 0.00 35.60 1.47
985 1017 7.729124 TTTAGCTGTACCCTTCAGTTATACT 57.271 36.000 0.00 0.00 35.60 2.12
986 1018 8.827832 TTTAGCTGTACCCTTCAGTTATACTA 57.172 34.615 0.00 0.00 35.60 1.82
987 1019 8.827832 TTAGCTGTACCCTTCAGTTATACTAA 57.172 34.615 0.00 0.00 35.60 2.24
988 1020 7.916077 AGCTGTACCCTTCAGTTATACTAAT 57.084 36.000 0.00 0.00 35.60 1.73
1037 1077 3.756434 TCTGCAATTACCTTAACCACAGC 59.244 43.478 0.00 0.00 0.00 4.40
1081 1126 2.239654 TCCTCCTCCATGCGAATCTTTT 59.760 45.455 0.00 0.00 0.00 2.27
1201 1252 1.066716 AGCTTTACCGCCACGACAATA 60.067 47.619 0.00 0.00 0.00 1.90
1287 1338 1.356979 CTCGGACATCATCGTCGCT 59.643 57.895 0.00 0.00 36.73 4.93
1612 1667 1.069227 ACTTCGCGAACAAATTCAGGC 60.069 47.619 19.38 0.00 34.14 4.85
1615 1670 0.179189 CGCGAACAAATTCAGGCTCC 60.179 55.000 0.00 0.00 34.14 4.70
1666 1721 2.202756 CCGCCGACTACTTCTGCC 60.203 66.667 0.00 0.00 30.88 4.85
1779 1834 5.049060 CAGGTACGAAGAGATGAATCGAGAT 60.049 44.000 1.03 0.00 0.00 2.75
2075 2134 0.618981 TCCGGTCTCTCTGTCTAGCA 59.381 55.000 0.00 0.00 0.00 3.49
2076 2135 1.004394 TCCGGTCTCTCTGTCTAGCAA 59.996 52.381 0.00 0.00 0.00 3.91
2128 2188 6.260714 AGCGTCACTCATATCATTTGCAAATA 59.739 34.615 23.69 9.86 0.00 1.40
2251 2315 4.320456 CAGTGGAGGTGCGGTGCT 62.320 66.667 0.00 0.00 0.00 4.40
2266 2331 1.148273 TGCTTGAGGGTGTGGTGTC 59.852 57.895 0.00 0.00 0.00 3.67
2269 2334 0.105964 CTTGAGGGTGTGGTGTCGAA 59.894 55.000 0.00 0.00 0.00 3.71
2372 2448 0.460284 GTCGTCGTGCAATCCATCCT 60.460 55.000 0.00 0.00 0.00 3.24
2373 2449 1.107945 TCGTCGTGCAATCCATCCTA 58.892 50.000 0.00 0.00 0.00 2.94
2381 2457 2.300433 GCAATCCATCCTATGCACACA 58.700 47.619 0.00 0.00 38.63 3.72
2392 2468 3.188786 GCACACACTCGGATCCGC 61.189 66.667 29.62 8.82 39.59 5.54
2396 2472 1.519455 CACACTCGGATCCGCTTCC 60.519 63.158 29.62 0.00 39.59 3.46
2406 2482 2.584608 CCGCTTCCTCGGGTGAAT 59.415 61.111 0.00 0.00 45.38 2.57
2415 2491 0.830648 CTCGGGTGAATGCCTAAGGA 59.169 55.000 0.00 0.00 0.00 3.36
2423 2499 0.696501 AATGCCTAAGGACCGGTTGT 59.303 50.000 9.42 0.00 0.00 3.32
2495 2572 3.676093 GAAGAACTTTGGATCCCGTTCT 58.324 45.455 24.35 24.35 45.64 3.01
2509 2586 1.675641 GTTCTTGCGCTCCATGGGT 60.676 57.895 13.02 0.00 0.00 4.51
2558 2636 2.173669 GTCCGCCGATGATGTGGTG 61.174 63.158 0.00 0.00 34.90 4.17
2589 2669 1.804151 GCTTCTTGTGTGGCAACGATA 59.196 47.619 0.00 0.00 42.51 2.92
2611 2692 1.671379 GCTTCGGGTGGAGTTGGTC 60.671 63.158 0.00 0.00 0.00 4.02
2738 2822 0.173481 CGATGACATGAGACGGGTGT 59.827 55.000 0.00 0.00 0.00 4.16
2742 2826 0.242825 GACATGAGACGGGTGTTCGA 59.757 55.000 0.00 0.00 0.00 3.71
2750 2834 2.030401 CGGGTGTTCGATTTCGGCA 61.030 57.895 0.00 0.00 40.29 5.69
2758 2842 2.486966 GATTTCGGCACTGGCTGC 59.513 61.111 0.52 0.00 46.35 5.25
2759 2843 2.034687 ATTTCGGCACTGGCTGCT 59.965 55.556 0.00 0.00 46.25 4.24
2760 2844 0.744414 GATTTCGGCACTGGCTGCTA 60.744 55.000 0.00 0.00 46.25 3.49
2761 2845 0.322456 ATTTCGGCACTGGCTGCTAA 60.322 50.000 0.00 0.00 46.25 3.09
2762 2846 0.955428 TTTCGGCACTGGCTGCTAAG 60.955 55.000 0.00 0.18 46.25 2.18
2763 2847 2.046892 CGGCACTGGCTGCTAAGT 60.047 61.111 0.00 0.87 46.25 2.24
2764 2848 1.218047 CGGCACTGGCTGCTAAGTA 59.782 57.895 0.00 0.00 46.25 2.24
2765 2849 0.391130 CGGCACTGGCTGCTAAGTAA 60.391 55.000 0.00 0.00 46.25 2.24
2766 2850 1.821216 GGCACTGGCTGCTAAGTAAA 58.179 50.000 0.00 0.00 46.25 2.01
2767 2851 2.369394 GGCACTGGCTGCTAAGTAAAT 58.631 47.619 0.00 0.00 46.25 1.40
2768 2852 3.541632 GGCACTGGCTGCTAAGTAAATA 58.458 45.455 0.00 0.00 46.25 1.40
2769 2853 3.561725 GGCACTGGCTGCTAAGTAAATAG 59.438 47.826 0.00 0.00 46.25 1.73
2770 2854 3.561725 GCACTGGCTGCTAAGTAAATAGG 59.438 47.826 0.00 0.00 43.33 2.57
2771 2855 4.130118 CACTGGCTGCTAAGTAAATAGGG 58.870 47.826 0.00 0.00 0.00 3.53
2772 2856 4.037927 ACTGGCTGCTAAGTAAATAGGGA 58.962 43.478 0.00 0.00 0.00 4.20
2773 2857 4.473559 ACTGGCTGCTAAGTAAATAGGGAA 59.526 41.667 0.00 0.00 0.00 3.97
2774 2858 5.132816 ACTGGCTGCTAAGTAAATAGGGAAT 59.867 40.000 0.00 0.00 0.00 3.01
2775 2859 6.013554 TGGCTGCTAAGTAAATAGGGAATT 57.986 37.500 0.00 0.00 0.00 2.17
2776 2860 6.431722 TGGCTGCTAAGTAAATAGGGAATTT 58.568 36.000 0.00 0.00 40.87 1.82
2777 2861 6.895204 TGGCTGCTAAGTAAATAGGGAATTTT 59.105 34.615 0.00 0.00 38.71 1.82
2778 2862 7.398904 TGGCTGCTAAGTAAATAGGGAATTTTT 59.601 33.333 0.00 0.00 38.71 1.94
2815 2899 6.246420 CCATGAGTAAATTACTAGCATGGC 57.754 41.667 26.79 8.95 45.81 4.40
2816 2900 5.764686 CCATGAGTAAATTACTAGCATGGCA 59.235 40.000 26.79 13.08 45.81 4.92
2817 2901 6.432162 CCATGAGTAAATTACTAGCATGGCAT 59.568 38.462 26.79 14.35 45.81 4.40
2818 2902 6.866010 TGAGTAAATTACTAGCATGGCATG 57.134 37.500 22.99 22.99 39.59 4.06
2819 2903 5.764686 TGAGTAAATTACTAGCATGGCATGG 59.235 40.000 27.48 14.27 39.59 3.66
2820 2904 5.940617 AGTAAATTACTAGCATGGCATGGA 58.059 37.500 27.48 0.00 37.23 3.41
2821 2905 5.765182 AGTAAATTACTAGCATGGCATGGAC 59.235 40.000 27.48 12.80 37.23 4.02
2822 2906 3.862877 ATTACTAGCATGGCATGGACA 57.137 42.857 27.48 5.33 0.00 4.02
2823 2907 2.916702 TACTAGCATGGCATGGACAG 57.083 50.000 27.48 13.76 0.00 3.51
2824 2908 1.206878 ACTAGCATGGCATGGACAGA 58.793 50.000 27.48 4.89 0.00 3.41
2825 2909 1.561076 ACTAGCATGGCATGGACAGAA 59.439 47.619 27.48 2.86 0.00 3.02
2826 2910 2.025981 ACTAGCATGGCATGGACAGAAA 60.026 45.455 27.48 0.67 0.00 2.52
2827 2911 2.154567 AGCATGGCATGGACAGAAAT 57.845 45.000 27.48 0.00 0.00 2.17
2828 2912 3.301794 AGCATGGCATGGACAGAAATA 57.698 42.857 27.48 0.00 0.00 1.40
2829 2913 3.634504 AGCATGGCATGGACAGAAATAA 58.365 40.909 27.48 0.00 0.00 1.40
2830 2914 4.220724 AGCATGGCATGGACAGAAATAAT 58.779 39.130 27.48 0.00 0.00 1.28
2831 2915 5.387788 AGCATGGCATGGACAGAAATAATA 58.612 37.500 27.48 0.00 0.00 0.98
2832 2916 5.475909 AGCATGGCATGGACAGAAATAATAG 59.524 40.000 27.48 0.00 0.00 1.73
2833 2917 5.706916 CATGGCATGGACAGAAATAATAGC 58.293 41.667 19.80 0.00 0.00 2.97
2834 2918 4.790937 TGGCATGGACAGAAATAATAGCA 58.209 39.130 0.00 0.00 0.00 3.49
2835 2919 5.387788 TGGCATGGACAGAAATAATAGCAT 58.612 37.500 0.00 0.00 0.00 3.79
2836 2920 6.541907 TGGCATGGACAGAAATAATAGCATA 58.458 36.000 0.00 0.00 0.00 3.14
2837 2921 6.430925 TGGCATGGACAGAAATAATAGCATAC 59.569 38.462 0.00 0.00 0.00 2.39
2838 2922 6.656693 GGCATGGACAGAAATAATAGCATACT 59.343 38.462 0.00 0.00 0.00 2.12
2839 2923 7.824289 GGCATGGACAGAAATAATAGCATACTA 59.176 37.037 0.00 0.00 0.00 1.82
2840 2924 9.219603 GCATGGACAGAAATAATAGCATACTAA 57.780 33.333 0.00 0.00 30.45 2.24
2854 2938 6.395089 AGCATACTAATATTCAATCACGCG 57.605 37.500 3.53 3.53 0.00 6.01
2855 2939 6.156519 AGCATACTAATATTCAATCACGCGA 58.843 36.000 15.93 0.00 0.00 5.87
2856 2940 6.309009 AGCATACTAATATTCAATCACGCGAG 59.691 38.462 15.93 4.59 0.00 5.03
2857 2941 4.974103 ACTAATATTCAATCACGCGAGC 57.026 40.909 15.93 0.00 0.00 5.03
2858 2942 4.368315 ACTAATATTCAATCACGCGAGCA 58.632 39.130 15.93 0.00 0.00 4.26
2859 2943 3.592381 AATATTCAATCACGCGAGCAC 57.408 42.857 15.93 0.00 0.00 4.40
2860 2944 2.003196 TATTCAATCACGCGAGCACA 57.997 45.000 15.93 0.00 0.00 4.57
2861 2945 1.372582 ATTCAATCACGCGAGCACAT 58.627 45.000 15.93 0.00 0.00 3.21
2862 2946 2.003196 TTCAATCACGCGAGCACATA 57.997 45.000 15.93 0.00 0.00 2.29
2863 2947 1.277326 TCAATCACGCGAGCACATAC 58.723 50.000 15.93 0.00 0.00 2.39
2864 2948 1.135112 TCAATCACGCGAGCACATACT 60.135 47.619 15.93 0.00 0.00 2.12
2865 2949 2.098443 TCAATCACGCGAGCACATACTA 59.902 45.455 15.93 0.00 0.00 1.82
2866 2950 2.121116 ATCACGCGAGCACATACTAC 57.879 50.000 15.93 0.00 0.00 2.73
2867 2951 0.247934 TCACGCGAGCACATACTACG 60.248 55.000 15.93 0.00 0.00 3.51
2868 2952 1.585521 ACGCGAGCACATACTACGC 60.586 57.895 15.93 0.00 44.64 4.42
2869 2953 1.298413 CGCGAGCACATACTACGCT 60.298 57.895 0.00 0.00 45.64 5.07
2870 2954 0.041576 CGCGAGCACATACTACGCTA 60.042 55.000 0.00 0.00 45.64 4.26
2871 2955 1.596220 CGCGAGCACATACTACGCTAA 60.596 52.381 0.00 0.00 45.64 3.09
2872 2956 2.662700 GCGAGCACATACTACGCTAAT 58.337 47.619 0.00 0.00 44.67 1.73
2873 2957 3.050619 GCGAGCACATACTACGCTAATT 58.949 45.455 0.00 0.00 44.67 1.40
2874 2958 3.121328 GCGAGCACATACTACGCTAATTG 60.121 47.826 0.00 0.00 44.67 2.32
2875 2959 3.121328 CGAGCACATACTACGCTAATTGC 60.121 47.826 0.00 0.00 35.75 3.56
2876 2960 3.792401 AGCACATACTACGCTAATTGCA 58.208 40.909 0.00 0.00 43.06 4.08
2877 2961 3.804325 AGCACATACTACGCTAATTGCAG 59.196 43.478 0.00 0.00 43.06 4.41
2878 2962 3.802139 GCACATACTACGCTAATTGCAGA 59.198 43.478 0.00 0.00 43.06 4.26
2879 2963 4.318121 GCACATACTACGCTAATTGCAGAC 60.318 45.833 0.00 0.00 43.06 3.51
2880 2964 4.803613 CACATACTACGCTAATTGCAGACA 59.196 41.667 0.00 0.00 43.06 3.41
2881 2965 5.043903 ACATACTACGCTAATTGCAGACAG 58.956 41.667 0.00 0.00 43.06 3.51
2882 2966 3.868757 ACTACGCTAATTGCAGACAGA 57.131 42.857 0.00 0.00 43.06 3.41
2883 2967 4.392921 ACTACGCTAATTGCAGACAGAT 57.607 40.909 0.00 0.00 43.06 2.90
2884 2968 4.363999 ACTACGCTAATTGCAGACAGATC 58.636 43.478 0.00 0.00 43.06 2.75
2885 2969 3.533606 ACGCTAATTGCAGACAGATCT 57.466 42.857 0.00 0.00 43.06 2.75
2886 2970 4.655762 ACGCTAATTGCAGACAGATCTA 57.344 40.909 0.00 0.00 43.06 1.98
2887 2971 4.363999 ACGCTAATTGCAGACAGATCTAC 58.636 43.478 0.00 0.00 43.06 2.59
2888 2972 3.423536 CGCTAATTGCAGACAGATCTACG 59.576 47.826 0.00 0.00 43.06 3.51
2889 2973 4.363999 GCTAATTGCAGACAGATCTACGT 58.636 43.478 0.00 0.00 42.31 3.57
2890 2974 5.520632 GCTAATTGCAGACAGATCTACGTA 58.479 41.667 0.00 0.00 42.31 3.57
2891 2975 6.153067 GCTAATTGCAGACAGATCTACGTAT 58.847 40.000 0.00 0.00 42.31 3.06
2892 2976 7.306213 GCTAATTGCAGACAGATCTACGTATA 58.694 38.462 0.00 0.00 42.31 1.47
2893 2977 7.808381 GCTAATTGCAGACAGATCTACGTATAA 59.192 37.037 0.00 0.00 42.31 0.98
2894 2978 9.847706 CTAATTGCAGACAGATCTACGTATAAT 57.152 33.333 0.00 0.00 32.25 1.28
2896 2980 9.627395 AATTGCAGACAGATCTACGTATAATAC 57.373 33.333 0.00 0.00 32.25 1.89
2897 2981 7.981102 TGCAGACAGATCTACGTATAATACT 57.019 36.000 0.00 0.00 32.25 2.12
2898 2982 9.498176 TTGCAGACAGATCTACGTATAATACTA 57.502 33.333 0.00 0.00 32.25 1.82
2899 2983 9.152595 TGCAGACAGATCTACGTATAATACTAG 57.847 37.037 0.00 0.00 32.25 2.57
2900 2984 9.153721 GCAGACAGATCTACGTATAATACTAGT 57.846 37.037 0.00 0.00 32.25 2.57
2912 2996 9.820725 ACGTATAATACTAGTATGGCAAAAACA 57.179 29.630 16.11 0.00 0.00 2.83
2918 3002 9.908152 AATACTAGTATGGCAAAAACAGAAAAC 57.092 29.630 16.11 0.00 0.00 2.43
2919 3003 7.341445 ACTAGTATGGCAAAAACAGAAAACA 57.659 32.000 0.00 0.00 0.00 2.83
2920 3004 7.425606 ACTAGTATGGCAAAAACAGAAAACAG 58.574 34.615 0.00 0.00 0.00 3.16
2921 3005 6.220726 AGTATGGCAAAAACAGAAAACAGT 57.779 33.333 0.00 0.00 0.00 3.55
2922 3006 7.341445 AGTATGGCAAAAACAGAAAACAGTA 57.659 32.000 0.00 0.00 0.00 2.74
2923 3007 7.425606 AGTATGGCAAAAACAGAAAACAGTAG 58.574 34.615 0.00 0.00 0.00 2.57
2924 3008 5.004922 TGGCAAAAACAGAAAACAGTAGG 57.995 39.130 0.00 0.00 0.00 3.18
2925 3009 4.707448 TGGCAAAAACAGAAAACAGTAGGA 59.293 37.500 0.00 0.00 0.00 2.94
2926 3010 5.163561 TGGCAAAAACAGAAAACAGTAGGAG 60.164 40.000 0.00 0.00 0.00 3.69
2927 3011 5.163550 GGCAAAAACAGAAAACAGTAGGAGT 60.164 40.000 0.00 0.00 0.00 3.85
2928 3012 5.743872 GCAAAAACAGAAAACAGTAGGAGTG 59.256 40.000 0.00 0.00 0.00 3.51
2929 3013 6.265577 CAAAAACAGAAAACAGTAGGAGTGG 58.734 40.000 0.00 0.00 0.00 4.00
2930 3014 3.771577 ACAGAAAACAGTAGGAGTGGG 57.228 47.619 0.00 0.00 0.00 4.61
2931 3015 3.314693 ACAGAAAACAGTAGGAGTGGGA 58.685 45.455 0.00 0.00 0.00 4.37
2932 3016 3.910627 ACAGAAAACAGTAGGAGTGGGAT 59.089 43.478 0.00 0.00 0.00 3.85
2933 3017 5.091552 ACAGAAAACAGTAGGAGTGGGATA 58.908 41.667 0.00 0.00 0.00 2.59
2934 3018 5.546499 ACAGAAAACAGTAGGAGTGGGATAA 59.454 40.000 0.00 0.00 0.00 1.75
2935 3019 6.043938 ACAGAAAACAGTAGGAGTGGGATAAA 59.956 38.462 0.00 0.00 0.00 1.40
2936 3020 6.371825 CAGAAAACAGTAGGAGTGGGATAAAC 59.628 42.308 0.00 0.00 0.00 2.01
2937 3021 4.467198 AACAGTAGGAGTGGGATAAACG 57.533 45.455 0.00 0.00 0.00 3.60
2938 3022 3.705051 ACAGTAGGAGTGGGATAAACGA 58.295 45.455 0.00 0.00 0.00 3.85
2939 3023 3.700038 ACAGTAGGAGTGGGATAAACGAG 59.300 47.826 0.00 0.00 0.00 4.18
2940 3024 3.700038 CAGTAGGAGTGGGATAAACGAGT 59.300 47.826 0.00 0.00 0.00 4.18
2941 3025 4.159879 CAGTAGGAGTGGGATAAACGAGTT 59.840 45.833 0.00 0.00 0.00 3.01
2942 3026 5.359009 CAGTAGGAGTGGGATAAACGAGTTA 59.641 44.000 0.00 0.00 0.00 2.24
2943 3027 6.040616 CAGTAGGAGTGGGATAAACGAGTTAT 59.959 42.308 0.00 0.00 34.97 1.89
2944 3028 7.230108 CAGTAGGAGTGGGATAAACGAGTTATA 59.770 40.741 0.00 0.00 32.26 0.98
2945 3029 6.402456 AGGAGTGGGATAAACGAGTTATAC 57.598 41.667 0.00 0.00 32.26 1.47
2950 3034 5.144692 GGGATAAACGAGTTATACCCTCC 57.855 47.826 11.63 3.81 44.83 4.30
2951 3035 4.590222 GGGATAAACGAGTTATACCCTCCA 59.410 45.833 11.63 0.00 44.83 3.86
2952 3036 5.279356 GGGATAAACGAGTTATACCCTCCAG 60.279 48.000 11.63 0.00 44.83 3.86
2953 3037 5.303845 GGATAAACGAGTTATACCCTCCAGT 59.696 44.000 0.00 0.00 32.26 4.00
2954 3038 6.491403 GGATAAACGAGTTATACCCTCCAGTA 59.509 42.308 0.00 0.00 32.26 2.74
2955 3039 5.848833 AAACGAGTTATACCCTCCAGTAG 57.151 43.478 0.00 0.00 0.00 2.57
2956 3040 3.830121 ACGAGTTATACCCTCCAGTAGG 58.170 50.000 0.00 0.00 46.09 3.18
2957 3041 2.557490 CGAGTTATACCCTCCAGTAGGC 59.443 54.545 0.00 0.00 45.03 3.93
2958 3042 2.557490 GAGTTATACCCTCCAGTAGGCG 59.443 54.545 0.00 0.00 45.03 5.52
2959 3043 2.176364 AGTTATACCCTCCAGTAGGCGA 59.824 50.000 0.00 0.00 45.03 5.54
2960 3044 2.557490 GTTATACCCTCCAGTAGGCGAG 59.443 54.545 0.00 0.00 45.03 5.03
2961 3045 0.178958 ATACCCTCCAGTAGGCGAGG 60.179 60.000 0.00 0.00 45.03 4.63
2962 3046 2.923634 TACCCTCCAGTAGGCGAGGC 62.924 65.000 0.30 0.00 45.03 4.70
2963 3047 2.759973 CCTCCAGTAGGCGAGGCA 60.760 66.667 0.00 0.00 39.36 4.75
2964 3048 2.790791 CCTCCAGTAGGCGAGGCAG 61.791 68.421 0.00 0.00 39.36 4.85
2965 3049 1.754621 CTCCAGTAGGCGAGGCAGA 60.755 63.158 0.00 0.00 33.74 4.26
2966 3050 1.304962 TCCAGTAGGCGAGGCAGAA 60.305 57.895 0.00 0.00 33.74 3.02
2967 3051 1.142748 CCAGTAGGCGAGGCAGAAG 59.857 63.158 0.00 0.00 0.00 2.85
2968 3052 1.520342 CAGTAGGCGAGGCAGAAGC 60.520 63.158 0.00 0.00 41.10 3.86
3001 3085 4.660938 GGCGTCCTTGGTGGCCTT 62.661 66.667 3.32 0.00 42.29 4.35
3002 3086 3.056328 GCGTCCTTGGTGGCCTTC 61.056 66.667 3.32 0.00 35.26 3.46
3003 3087 2.750350 CGTCCTTGGTGGCCTTCT 59.250 61.111 3.32 0.00 35.26 2.85
3004 3088 1.073199 CGTCCTTGGTGGCCTTCTT 59.927 57.895 3.32 0.00 35.26 2.52
3005 3089 1.237285 CGTCCTTGGTGGCCTTCTTG 61.237 60.000 3.32 0.00 35.26 3.02
3006 3090 0.178990 GTCCTTGGTGGCCTTCTTGT 60.179 55.000 3.32 0.00 35.26 3.16
3007 3091 0.110486 TCCTTGGTGGCCTTCTTGTC 59.890 55.000 3.32 0.00 35.26 3.18
3008 3092 1.237285 CCTTGGTGGCCTTCTTGTCG 61.237 60.000 3.32 0.00 0.00 4.35
3009 3093 1.228124 TTGGTGGCCTTCTTGTCGG 60.228 57.895 3.32 0.00 0.00 4.79
3010 3094 3.056328 GGTGGCCTTCTTGTCGGC 61.056 66.667 3.32 0.00 45.55 5.54
3014 3098 2.815647 GCCTTCTTGTCGGCCTCG 60.816 66.667 0.00 0.00 40.43 4.63
3015 3099 2.970639 CCTTCTTGTCGGCCTCGA 59.029 61.111 0.00 0.00 43.86 4.04
3016 3100 1.153745 CCTTCTTGTCGGCCTCGAG 60.154 63.158 5.13 5.13 46.91 4.04
3017 3101 1.807573 CTTCTTGTCGGCCTCGAGC 60.808 63.158 6.99 2.33 46.91 5.03
3018 3102 2.219325 CTTCTTGTCGGCCTCGAGCT 62.219 60.000 6.99 0.00 46.91 4.09
3019 3103 1.816863 TTCTTGTCGGCCTCGAGCTT 61.817 55.000 6.99 0.00 46.91 3.74
3020 3104 1.807573 CTTGTCGGCCTCGAGCTTC 60.808 63.158 6.99 0.00 46.91 3.86
3021 3105 2.219325 CTTGTCGGCCTCGAGCTTCT 62.219 60.000 6.99 0.00 46.91 2.85
3022 3106 2.103340 GTCGGCCTCGAGCTTCTC 59.897 66.667 6.99 0.00 46.91 2.87
3023 3107 2.361230 TCGGCCTCGAGCTTCTCA 60.361 61.111 6.99 0.00 40.88 3.27
3024 3108 2.103934 CGGCCTCGAGCTTCTCAG 59.896 66.667 6.99 0.00 43.05 3.35
3033 3117 4.177229 GCTTCTCAGCGACCAGAC 57.823 61.111 0.00 0.00 35.91 3.51
3034 3118 1.803519 GCTTCTCAGCGACCAGACG 60.804 63.158 0.00 0.00 35.91 4.18
3035 3119 1.876664 CTTCTCAGCGACCAGACGA 59.123 57.895 0.00 0.00 35.09 4.20
3036 3120 0.453793 CTTCTCAGCGACCAGACGAT 59.546 55.000 0.00 0.00 35.09 3.73
3037 3121 0.452184 TTCTCAGCGACCAGACGATC 59.548 55.000 0.00 0.00 35.09 3.69
3038 3122 1.297967 CTCAGCGACCAGACGATCG 60.298 63.158 14.88 14.88 41.32 3.69
3039 3123 2.278206 CAGCGACCAGACGATCGG 60.278 66.667 20.98 3.61 38.78 4.18
3040 3124 4.194720 AGCGACCAGACGATCGGC 62.195 66.667 20.98 18.17 38.78 5.54
3050 3134 2.711311 CGATCGGCGTCGGACTAA 59.289 61.111 10.62 0.00 37.94 2.24
3051 3135 1.368969 CGATCGGCGTCGGACTAAG 60.369 63.158 10.62 0.00 37.94 2.18
3052 3136 1.769098 CGATCGGCGTCGGACTAAGA 61.769 60.000 10.62 2.98 37.94 2.10
3053 3137 0.316854 GATCGGCGTCGGACTAAGAC 60.317 60.000 10.62 0.00 36.95 3.01
3054 3138 1.028330 ATCGGCGTCGGACTAAGACA 61.028 55.000 10.62 0.00 38.46 3.41
3055 3139 1.028330 TCGGCGTCGGACTAAGACAT 61.028 55.000 10.62 0.00 38.46 3.06
3056 3140 0.866061 CGGCGTCGGACTAAGACATG 60.866 60.000 0.00 0.00 38.46 3.21
3057 3141 0.454600 GGCGTCGGACTAAGACATGA 59.545 55.000 0.00 0.00 38.46 3.07
3058 3142 1.067212 GGCGTCGGACTAAGACATGAT 59.933 52.381 0.00 0.00 38.46 2.45
3059 3143 2.120232 GCGTCGGACTAAGACATGATG 58.880 52.381 0.00 0.00 38.46 3.07
3060 3144 2.223502 GCGTCGGACTAAGACATGATGA 60.224 50.000 0.00 0.00 38.46 2.92
3061 3145 3.551046 GCGTCGGACTAAGACATGATGAT 60.551 47.826 0.00 0.00 38.46 2.45
3062 3146 3.977579 CGTCGGACTAAGACATGATGATG 59.022 47.826 0.00 0.00 38.46 3.07
3063 3147 4.261197 CGTCGGACTAAGACATGATGATGA 60.261 45.833 0.00 0.00 38.46 2.92
3064 3148 5.563671 CGTCGGACTAAGACATGATGATGAT 60.564 44.000 0.00 0.00 38.46 2.45
3065 3149 5.632764 GTCGGACTAAGACATGATGATGATG 59.367 44.000 0.00 0.00 38.42 3.07
3066 3150 5.536161 TCGGACTAAGACATGATGATGATGA 59.464 40.000 0.00 0.00 33.36 2.92
3067 3151 6.040842 TCGGACTAAGACATGATGATGATGAA 59.959 38.462 0.00 0.00 33.36 2.57
3068 3152 6.365518 CGGACTAAGACATGATGATGATGAAG 59.634 42.308 0.00 0.00 33.36 3.02
3069 3153 7.440198 GGACTAAGACATGATGATGATGAAGA 58.560 38.462 0.00 0.00 33.36 2.87
3070 3154 7.384660 GGACTAAGACATGATGATGATGAAGAC 59.615 40.741 0.00 0.00 33.36 3.01
3071 3155 6.922407 ACTAAGACATGATGATGATGAAGACG 59.078 38.462 0.00 0.00 33.36 4.18
3072 3156 5.526506 AGACATGATGATGATGAAGACGA 57.473 39.130 0.00 0.00 33.36 4.20
3073 3157 5.288015 AGACATGATGATGATGAAGACGAC 58.712 41.667 0.00 0.00 33.36 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.583882 ATTTGGCAGTGGGGGTCGG 62.584 63.158 0.00 0.00 0.00 4.79
21 22 2.035626 ATTTGGCAGTGGGGGTCG 59.964 61.111 0.00 0.00 0.00 4.79
22 23 1.682344 GGATTTGGCAGTGGGGGTC 60.682 63.158 0.00 0.00 0.00 4.46
23 24 2.445155 GGATTTGGCAGTGGGGGT 59.555 61.111 0.00 0.00 0.00 4.95
24 25 2.755469 CGGATTTGGCAGTGGGGG 60.755 66.667 0.00 0.00 0.00 5.40
25 26 2.755469 CCGGATTTGGCAGTGGGG 60.755 66.667 0.00 0.00 0.00 4.96
43 44 4.247380 GCCTCCTGCTGGATCCGG 62.247 72.222 16.98 16.98 42.29 5.14
44 45 3.457625 CTGCCTCCTGCTGGATCCG 62.458 68.421 13.33 3.14 42.29 4.18
45 46 2.322638 GACTGCCTCCTGCTGGATCC 62.323 65.000 13.33 4.20 42.29 3.36
46 47 1.145819 GACTGCCTCCTGCTGGATC 59.854 63.158 13.33 8.70 42.29 3.36
47 48 2.373707 GGACTGCCTCCTGCTGGAT 61.374 63.158 13.33 0.00 42.29 3.41
48 49 3.005539 GGACTGCCTCCTGCTGGA 61.006 66.667 12.29 12.29 42.74 3.86
49 50 4.463879 CGGACTGCCTCCTGCTGG 62.464 72.222 2.58 2.58 42.74 4.85
66 67 4.821589 CTTCTCGGGAGGTGGCGC 62.822 72.222 0.00 0.00 0.00 6.53
67 68 4.148825 CCTTCTCGGGAGGTGGCG 62.149 72.222 0.00 0.00 0.00 5.69
106 107 4.760047 GATCTGTGTGCGGCGGGT 62.760 66.667 9.78 0.00 0.00 5.28
108 109 2.960957 CTAGGATCTGTGTGCGGCGG 62.961 65.000 9.78 0.00 0.00 6.13
109 110 1.589993 CTAGGATCTGTGTGCGGCG 60.590 63.158 0.51 0.51 0.00 6.46
110 111 0.528684 GTCTAGGATCTGTGTGCGGC 60.529 60.000 0.00 0.00 0.00 6.53
111 112 0.248661 CGTCTAGGATCTGTGTGCGG 60.249 60.000 0.00 0.00 0.00 5.69
112 113 0.452184 ACGTCTAGGATCTGTGTGCG 59.548 55.000 0.00 0.00 0.00 5.34
113 114 1.532090 CGACGTCTAGGATCTGTGTGC 60.532 57.143 14.70 0.00 0.00 4.57
114 115 1.064208 CCGACGTCTAGGATCTGTGTG 59.936 57.143 14.70 0.00 0.00 3.82
115 116 1.380524 CCGACGTCTAGGATCTGTGT 58.619 55.000 14.70 0.00 0.00 3.72
116 117 0.029567 GCCGACGTCTAGGATCTGTG 59.970 60.000 14.70 0.00 0.00 3.66
117 118 1.437772 CGCCGACGTCTAGGATCTGT 61.438 60.000 14.70 0.00 33.53 3.41
118 119 1.280142 CGCCGACGTCTAGGATCTG 59.720 63.158 14.70 0.00 33.53 2.90
119 120 2.544698 GCGCCGACGTCTAGGATCT 61.545 63.158 14.70 0.00 42.83 2.75
120 121 2.051166 GCGCCGACGTCTAGGATC 60.051 66.667 14.70 0.35 42.83 3.36
121 122 3.950254 CGCGCCGACGTCTAGGAT 61.950 66.667 14.70 0.00 42.83 3.24
186 187 4.812476 TTCGAGCGGTGGCGATGG 62.812 66.667 0.00 0.00 46.35 3.51
187 188 3.257561 CTTCGAGCGGTGGCGATG 61.258 66.667 0.00 0.00 46.35 3.84
188 189 3.449227 TCTTCGAGCGGTGGCGAT 61.449 61.111 0.00 0.00 46.35 4.58
189 190 4.415332 GTCTTCGAGCGGTGGCGA 62.415 66.667 0.00 0.00 46.35 5.54
217 218 3.716006 CTGCTCGTGGTGCGTTGG 61.716 66.667 0.00 0.00 42.13 3.77
218 219 2.661537 TCTGCTCGTGGTGCGTTG 60.662 61.111 0.00 0.00 42.13 4.10
219 220 2.356313 CTCTGCTCGTGGTGCGTT 60.356 61.111 0.00 0.00 42.13 4.84
220 221 4.363990 CCTCTGCTCGTGGTGCGT 62.364 66.667 0.00 0.00 42.13 5.24
222 223 4.767255 CCCCTCTGCTCGTGGTGC 62.767 72.222 0.00 0.00 0.00 5.01
223 224 4.087892 CCCCCTCTGCTCGTGGTG 62.088 72.222 0.00 0.00 0.00 4.17
224 225 3.846405 TTCCCCCTCTGCTCGTGGT 62.846 63.158 0.00 0.00 0.00 4.16
225 226 2.527951 CTTTCCCCCTCTGCTCGTGG 62.528 65.000 0.00 0.00 0.00 4.94
226 227 1.078848 CTTTCCCCCTCTGCTCGTG 60.079 63.158 0.00 0.00 0.00 4.35
227 228 2.294078 CCTTTCCCCCTCTGCTCGT 61.294 63.158 0.00 0.00 0.00 4.18
228 229 2.586792 CCTTTCCCCCTCTGCTCG 59.413 66.667 0.00 0.00 0.00 5.03
229 230 2.273776 GCCTTTCCCCCTCTGCTC 59.726 66.667 0.00 0.00 0.00 4.26
230 231 3.342477 GGCCTTTCCCCCTCTGCT 61.342 66.667 0.00 0.00 0.00 4.24
573 574 0.536006 ATTTATGCTCTCTGGCCCGC 60.536 55.000 0.00 0.00 0.00 6.13
574 575 1.972872 AATTTATGCTCTCTGGCCCG 58.027 50.000 0.00 0.00 0.00 6.13
575 576 4.889995 AGTAAAATTTATGCTCTCTGGCCC 59.110 41.667 0.00 0.00 0.00 5.80
576 577 5.009110 GGAGTAAAATTTATGCTCTCTGGCC 59.991 44.000 0.00 0.00 0.00 5.36
577 578 5.277538 CGGAGTAAAATTTATGCTCTCTGGC 60.278 44.000 13.65 0.00 0.00 4.85
578 579 6.018669 GTCGGAGTAAAATTTATGCTCTCTGG 60.019 42.308 13.65 1.19 0.00 3.86
579 580 6.018669 GGTCGGAGTAAAATTTATGCTCTCTG 60.019 42.308 13.65 11.28 0.00 3.35
580 581 6.049790 GGTCGGAGTAAAATTTATGCTCTCT 58.950 40.000 13.65 0.00 0.00 3.10
581 582 5.236695 GGGTCGGAGTAAAATTTATGCTCTC 59.763 44.000 13.65 8.07 0.00 3.20
582 583 5.123936 GGGTCGGAGTAAAATTTATGCTCT 58.876 41.667 13.65 1.51 0.00 4.09
583 584 4.275196 GGGGTCGGAGTAAAATTTATGCTC 59.725 45.833 0.00 1.07 0.00 4.26
584 585 4.079958 AGGGGTCGGAGTAAAATTTATGCT 60.080 41.667 0.00 0.00 0.00 3.79
585 586 4.204799 AGGGGTCGGAGTAAAATTTATGC 58.795 43.478 0.00 0.00 0.00 3.14
586 587 6.769134 AAAGGGGTCGGAGTAAAATTTATG 57.231 37.500 0.00 0.00 0.00 1.90
587 588 6.949463 TGAAAAGGGGTCGGAGTAAAATTTAT 59.051 34.615 0.00 0.00 0.00 1.40
588 589 6.305411 TGAAAAGGGGTCGGAGTAAAATTTA 58.695 36.000 0.00 0.00 0.00 1.40
589 590 5.141910 TGAAAAGGGGTCGGAGTAAAATTT 58.858 37.500 0.00 0.00 0.00 1.82
590 591 4.732065 TGAAAAGGGGTCGGAGTAAAATT 58.268 39.130 0.00 0.00 0.00 1.82
591 592 4.376225 TGAAAAGGGGTCGGAGTAAAAT 57.624 40.909 0.00 0.00 0.00 1.82
592 593 3.860968 TGAAAAGGGGTCGGAGTAAAA 57.139 42.857 0.00 0.00 0.00 1.52
593 594 3.560453 CCATGAAAAGGGGTCGGAGTAAA 60.560 47.826 0.00 0.00 0.00 2.01
594 595 2.026636 CCATGAAAAGGGGTCGGAGTAA 60.027 50.000 0.00 0.00 0.00 2.24
595 596 1.557832 CCATGAAAAGGGGTCGGAGTA 59.442 52.381 0.00 0.00 0.00 2.59
596 597 0.328258 CCATGAAAAGGGGTCGGAGT 59.672 55.000 0.00 0.00 0.00 3.85
597 598 0.618458 TCCATGAAAAGGGGTCGGAG 59.382 55.000 0.00 0.00 0.00 4.63
598 599 0.618458 CTCCATGAAAAGGGGTCGGA 59.382 55.000 0.00 0.00 0.00 4.55
599 600 0.328258 ACTCCATGAAAAGGGGTCGG 59.672 55.000 0.00 0.00 33.59 4.79
600 601 3.560636 ATACTCCATGAAAAGGGGTCG 57.439 47.619 0.00 0.00 39.65 4.79
601 602 8.437575 TCTAAATATACTCCATGAAAAGGGGTC 58.562 37.037 0.00 0.00 39.65 4.46
602 603 8.344939 TCTAAATATACTCCATGAAAAGGGGT 57.655 34.615 0.00 0.00 43.76 4.95
603 604 8.660435 TCTCTAAATATACTCCATGAAAAGGGG 58.340 37.037 0.00 0.00 0.00 4.79
604 605 9.717942 CTCTCTAAATATACTCCATGAAAAGGG 57.282 37.037 0.00 0.00 0.00 3.95
613 614 9.094578 CCCAATCTTCTCTCTAAATATACTCCA 57.905 37.037 0.00 0.00 0.00 3.86
614 615 9.095700 ACCCAATCTTCTCTCTAAATATACTCC 57.904 37.037 0.00 0.00 0.00 3.85
619 620 9.320295 CCTCTACCCAATCTTCTCTCTAAATAT 57.680 37.037 0.00 0.00 0.00 1.28
628 629 5.202004 TGTACTCCTCTACCCAATCTTCTC 58.798 45.833 0.00 0.00 0.00 2.87
639 640 4.419280 GCCGTAAACTTGTACTCCTCTAC 58.581 47.826 0.00 0.00 0.00 2.59
650 651 3.255725 TCACTTATCCGCCGTAAACTTG 58.744 45.455 0.00 0.00 0.00 3.16
652 653 3.454375 CATCACTTATCCGCCGTAAACT 58.546 45.455 0.00 0.00 0.00 2.66
653 654 2.542595 CCATCACTTATCCGCCGTAAAC 59.457 50.000 0.00 0.00 0.00 2.01
659 668 1.338200 CCTAGCCATCACTTATCCGCC 60.338 57.143 0.00 0.00 0.00 6.13
661 670 2.868044 GCACCTAGCCATCACTTATCCG 60.868 54.545 0.00 0.00 37.23 4.18
682 692 4.537135 TCTGCTTTACTCCACTAACTGG 57.463 45.455 0.00 0.00 42.29 4.00
684 694 8.465273 AAAATTTCTGCTTTACTCCACTAACT 57.535 30.769 0.00 0.00 0.00 2.24
687 697 9.569122 AAGTAAAATTTCTGCTTTACTCCACTA 57.431 29.630 7.47 0.00 43.97 2.74
692 702 9.730420 TTGTGAAGTAAAATTTCTGCTTTACTC 57.270 29.630 17.34 3.75 43.97 2.59
699 709 5.174943 CCGGTTTGTGAAGTAAAATTTCTGC 59.825 40.000 0.00 0.00 0.00 4.26
701 711 6.459670 ACCGGTTTGTGAAGTAAAATTTCT 57.540 33.333 0.00 0.00 0.00 2.52
709 719 6.757237 TCACTTATAACCGGTTTGTGAAGTA 58.243 36.000 27.64 4.63 31.30 2.24
710 720 5.613329 TCACTTATAACCGGTTTGTGAAGT 58.387 37.500 27.64 23.31 31.30 3.01
711 721 6.455113 CGATCACTTATAACCGGTTTGTGAAG 60.455 42.308 30.04 25.32 36.70 3.02
712 722 5.349270 CGATCACTTATAACCGGTTTGTGAA 59.651 40.000 30.04 20.81 36.70 3.18
714 724 4.033587 CCGATCACTTATAACCGGTTTGTG 59.966 45.833 27.64 25.20 33.02 3.33
715 725 4.186159 CCGATCACTTATAACCGGTTTGT 58.814 43.478 27.64 17.08 33.02 2.83
716 726 4.186159 ACCGATCACTTATAACCGGTTTG 58.814 43.478 27.64 17.33 46.64 2.93
717 727 4.476628 ACCGATCACTTATAACCGGTTT 57.523 40.909 27.64 15.51 46.64 3.27
731 741 3.644966 AAGGGCATTTCTAACCGATCA 57.355 42.857 0.00 0.00 0.00 2.92
736 746 6.241645 AGCAGATATAAGGGCATTTCTAACC 58.758 40.000 0.00 0.00 0.00 2.85
791 801 4.152402 ACAGTACAATGATGTCGAGTTTGC 59.848 41.667 0.00 0.00 41.05 3.68
792 802 5.845985 ACAGTACAATGATGTCGAGTTTG 57.154 39.130 0.00 0.00 41.05 2.93
793 803 9.084164 GTAATACAGTACAATGATGTCGAGTTT 57.916 33.333 0.00 0.00 41.05 2.66
803 813 4.403113 TCTGCCCGTAATACAGTACAATGA 59.597 41.667 0.00 0.00 33.12 2.57
804 814 4.689071 TCTGCCCGTAATACAGTACAATG 58.311 43.478 0.00 0.00 33.12 2.82
806 816 5.347620 AATCTGCCCGTAATACAGTACAA 57.652 39.130 0.00 0.00 33.12 2.41
868 878 0.808755 CGAAAATGTGGCTGGTACCC 59.191 55.000 10.07 0.00 0.00 3.69
887 912 5.112052 CGCGTTATTCTATTCGAATGCAAAC 59.888 40.000 20.87 14.64 42.22 2.93
896 921 1.714348 GCGTGCGCGTTATTCTATTCG 60.714 52.381 22.18 0.00 40.81 3.34
948 980 1.334869 CAGCTAAATGAATCGGGTGGC 59.665 52.381 0.00 0.00 0.00 5.01
949 981 2.643551 ACAGCTAAATGAATCGGGTGG 58.356 47.619 0.00 0.00 0.00 4.61
959 991 8.204836 AGTATAACTGAAGGGTACAGCTAAATG 58.795 37.037 0.00 0.00 38.74 2.32
963 995 9.430399 AATTAGTATAACTGAAGGGTACAGCTA 57.570 33.333 0.00 0.00 38.74 3.32
1015 1047 3.756434 GCTGTGGTTAAGGTAATTGCAGA 59.244 43.478 0.00 0.00 0.00 4.26
1025 1065 2.093764 CAGAGAGAGGCTGTGGTTAAGG 60.094 54.545 0.00 0.00 34.41 2.69
1029 1069 1.123861 TGCAGAGAGAGGCTGTGGTT 61.124 55.000 0.00 0.00 38.29 3.67
1037 1077 2.740981 GACATTGTGTTGCAGAGAGAGG 59.259 50.000 0.00 0.00 0.00 3.69
1287 1338 4.077184 CCGGACTTGGGCAGCGTA 62.077 66.667 0.00 0.00 0.00 4.42
1647 1702 2.571757 CAGAAGTAGTCGGCGGCA 59.428 61.111 16.23 0.00 0.00 5.69
1742 1797 1.272490 CGTACCTGAAGAAGAGCACCA 59.728 52.381 0.00 0.00 0.00 4.17
1772 1827 4.286320 GTGCCGCCGGATCTCGAT 62.286 66.667 7.68 0.00 42.43 3.59
1801 1856 2.642254 ATCCGACGAACTCCGCCAA 61.642 57.895 0.00 0.00 43.32 4.52
2075 2134 6.485648 GTCGAATAATATTACACCCCAGCTTT 59.514 38.462 0.00 0.00 0.00 3.51
2076 2135 5.995897 GTCGAATAATATTACACCCCAGCTT 59.004 40.000 0.00 0.00 0.00 3.74
2128 2188 3.744426 CGGTAAAAACTCACGAGGAATGT 59.256 43.478 0.00 0.00 0.00 2.71
2186 2250 3.656045 CACCACCACGGCGGAAAC 61.656 66.667 13.24 0.00 39.03 2.78
2251 2315 0.179067 GTTCGACACCACACCCTCAA 60.179 55.000 0.00 0.00 0.00 3.02
2318 2392 2.430382 AAACGACGTCCACGGATGCT 62.430 55.000 10.58 0.00 44.95 3.79
2364 2438 2.224137 CGAGTGTGTGCATAGGATGGAT 60.224 50.000 0.00 0.00 31.75 3.41
2372 2448 0.102300 CGGATCCGAGTGTGTGCATA 59.898 55.000 30.62 0.00 42.83 3.14
2373 2449 1.153568 CGGATCCGAGTGTGTGCAT 60.154 57.895 30.62 0.00 42.83 3.96
2381 2457 2.482333 CGAGGAAGCGGATCCGAGT 61.482 63.158 37.64 23.33 44.60 4.18
2392 2468 0.830648 TAGGCATTCACCCGAGGAAG 59.169 55.000 0.00 0.00 0.00 3.46
2396 2472 0.830648 TCCTTAGGCATTCACCCGAG 59.169 55.000 0.00 0.00 0.00 4.63
2406 2482 1.373435 CACAACCGGTCCTTAGGCA 59.627 57.895 8.04 0.00 0.00 4.75
2473 2550 2.094762 ACGGGATCCAAAGTTCTTCG 57.905 50.000 15.23 6.90 0.00 3.79
2509 2586 2.358615 AATGCTGCGAGCGTCCAA 60.359 55.556 3.78 0.00 46.26 3.53
2537 2614 1.153568 CACATCATCGGCGGACACT 60.154 57.895 7.21 0.00 0.00 3.55
2558 2636 1.441016 CAAGAAGCCGCGCAGAAAC 60.441 57.895 8.75 0.00 0.00 2.78
2589 2669 2.520536 AACTCCACCCGAAGCTGCT 61.521 57.895 0.00 0.00 0.00 4.24
2611 2692 3.066900 CGACTACCAAGACCCATCTACAG 59.933 52.174 0.00 0.00 33.57 2.74
2738 2822 1.003839 AGCCAGTGCCGAAATCGAA 60.004 52.632 4.04 0.00 38.69 3.71
2750 2834 4.037927 TCCCTATTTACTTAGCAGCCAGT 58.962 43.478 0.57 0.57 0.00 4.00
2793 2877 6.866010 TGCCATGCTAGTAATTTACTCATG 57.134 37.500 20.80 20.80 39.15 3.07
2794 2878 6.432162 CCATGCCATGCTAGTAATTTACTCAT 59.568 38.462 12.26 8.31 40.14 2.90
2795 2879 5.764686 CCATGCCATGCTAGTAATTTACTCA 59.235 40.000 12.26 6.41 40.14 3.41
2796 2880 5.997746 TCCATGCCATGCTAGTAATTTACTC 59.002 40.000 12.26 0.88 40.14 2.59
2797 2881 5.765182 GTCCATGCCATGCTAGTAATTTACT 59.235 40.000 13.36 13.36 42.68 2.24
2798 2882 5.530915 TGTCCATGCCATGCTAGTAATTTAC 59.469 40.000 0.00 0.00 0.00 2.01
2799 2883 5.689835 TGTCCATGCCATGCTAGTAATTTA 58.310 37.500 0.00 0.00 0.00 1.40
2800 2884 4.535781 TGTCCATGCCATGCTAGTAATTT 58.464 39.130 0.00 0.00 0.00 1.82
2801 2885 4.139786 CTGTCCATGCCATGCTAGTAATT 58.860 43.478 0.00 0.00 0.00 1.40
2802 2886 3.392285 TCTGTCCATGCCATGCTAGTAAT 59.608 43.478 0.00 0.00 0.00 1.89
2803 2887 2.771372 TCTGTCCATGCCATGCTAGTAA 59.229 45.455 0.00 0.00 0.00 2.24
2804 2888 2.397597 TCTGTCCATGCCATGCTAGTA 58.602 47.619 0.00 0.00 0.00 1.82
2805 2889 1.206878 TCTGTCCATGCCATGCTAGT 58.793 50.000 0.00 0.00 0.00 2.57
2806 2890 2.336945 TTCTGTCCATGCCATGCTAG 57.663 50.000 0.00 0.00 0.00 3.42
2807 2891 2.804986 TTTCTGTCCATGCCATGCTA 57.195 45.000 0.00 0.00 0.00 3.49
2808 2892 2.154567 ATTTCTGTCCATGCCATGCT 57.845 45.000 0.00 0.00 0.00 3.79
2809 2893 4.595762 ATTATTTCTGTCCATGCCATGC 57.404 40.909 0.00 0.00 0.00 4.06
2810 2894 5.242171 TGCTATTATTTCTGTCCATGCCATG 59.758 40.000 0.00 0.00 0.00 3.66
2811 2895 5.387788 TGCTATTATTTCTGTCCATGCCAT 58.612 37.500 0.00 0.00 0.00 4.40
2812 2896 4.790937 TGCTATTATTTCTGTCCATGCCA 58.209 39.130 0.00 0.00 0.00 4.92
2813 2897 5.972107 ATGCTATTATTTCTGTCCATGCC 57.028 39.130 0.00 0.00 0.00 4.40
2814 2898 7.678947 AGTATGCTATTATTTCTGTCCATGC 57.321 36.000 0.00 0.00 0.00 4.06
2828 2912 8.595533 CGCGTGATTGAATATTAGTATGCTATT 58.404 33.333 0.00 0.00 0.00 1.73
2829 2913 7.973944 TCGCGTGATTGAATATTAGTATGCTAT 59.026 33.333 5.77 0.00 0.00 2.97
2830 2914 7.309920 TCGCGTGATTGAATATTAGTATGCTA 58.690 34.615 5.77 0.00 0.00 3.49
2831 2915 6.156519 TCGCGTGATTGAATATTAGTATGCT 58.843 36.000 5.77 0.00 0.00 3.79
2832 2916 6.389622 TCGCGTGATTGAATATTAGTATGC 57.610 37.500 5.77 0.00 0.00 3.14
2833 2917 6.089417 TGCTCGCGTGATTGAATATTAGTATG 59.911 38.462 13.13 0.00 0.00 2.39
2834 2918 6.089551 GTGCTCGCGTGATTGAATATTAGTAT 59.910 38.462 13.13 0.00 0.00 2.12
2835 2919 5.401376 GTGCTCGCGTGATTGAATATTAGTA 59.599 40.000 13.13 0.00 0.00 1.82
2836 2920 4.209288 GTGCTCGCGTGATTGAATATTAGT 59.791 41.667 13.13 0.00 0.00 2.24
2837 2921 4.209080 TGTGCTCGCGTGATTGAATATTAG 59.791 41.667 13.13 0.00 0.00 1.73
2838 2922 4.116238 TGTGCTCGCGTGATTGAATATTA 58.884 39.130 13.13 0.00 0.00 0.98
2839 2923 2.935849 TGTGCTCGCGTGATTGAATATT 59.064 40.909 13.13 0.00 0.00 1.28
2840 2924 2.549926 TGTGCTCGCGTGATTGAATAT 58.450 42.857 13.13 0.00 0.00 1.28
2841 2925 2.003196 TGTGCTCGCGTGATTGAATA 57.997 45.000 13.13 0.00 0.00 1.75
2842 2926 1.372582 ATGTGCTCGCGTGATTGAAT 58.627 45.000 13.13 0.00 0.00 2.57
2843 2927 1.658596 GTATGTGCTCGCGTGATTGAA 59.341 47.619 13.13 0.00 0.00 2.69
2844 2928 1.135112 AGTATGTGCTCGCGTGATTGA 60.135 47.619 13.13 0.00 0.00 2.57
2845 2929 1.280982 AGTATGTGCTCGCGTGATTG 58.719 50.000 13.13 0.00 0.00 2.67
2846 2930 2.460918 GTAGTATGTGCTCGCGTGATT 58.539 47.619 13.13 0.00 0.00 2.57
2847 2931 1.597199 CGTAGTATGTGCTCGCGTGAT 60.597 52.381 13.13 0.00 0.00 3.06
2848 2932 0.247934 CGTAGTATGTGCTCGCGTGA 60.248 55.000 13.13 0.00 0.00 4.35
2849 2933 1.798368 GCGTAGTATGTGCTCGCGTG 61.798 60.000 5.77 4.44 37.74 5.34
2850 2934 1.585521 GCGTAGTATGTGCTCGCGT 60.586 57.895 5.77 0.00 37.74 6.01
2851 2935 3.212538 GCGTAGTATGTGCTCGCG 58.787 61.111 0.00 0.00 37.74 5.87
2852 2936 2.115348 TTAGCGTAGTATGTGCTCGC 57.885 50.000 0.00 0.00 45.82 5.03
2853 2937 3.121328 GCAATTAGCGTAGTATGTGCTCG 60.121 47.826 0.00 0.00 40.06 5.03
2854 2938 4.376450 GCAATTAGCGTAGTATGTGCTC 57.624 45.455 0.00 0.00 40.06 4.26
2867 2951 4.363999 ACGTAGATCTGTCTGCAATTAGC 58.636 43.478 5.18 0.00 45.96 3.09
2868 2952 9.847706 ATTATACGTAGATCTGTCTGCAATTAG 57.152 33.333 5.18 0.00 36.96 1.73
2870 2954 9.627395 GTATTATACGTAGATCTGTCTGCAATT 57.373 33.333 5.18 0.00 36.96 2.32
2871 2955 9.015367 AGTATTATACGTAGATCTGTCTGCAAT 57.985 33.333 5.18 1.56 36.96 3.56
2872 2956 8.392372 AGTATTATACGTAGATCTGTCTGCAA 57.608 34.615 5.18 0.00 36.96 4.08
2873 2957 7.981102 AGTATTATACGTAGATCTGTCTGCA 57.019 36.000 5.18 0.00 36.96 4.41
2874 2958 9.153721 ACTAGTATTATACGTAGATCTGTCTGC 57.846 37.037 5.18 0.00 35.87 4.26
2886 2970 9.820725 TGTTTTTGCCATACTAGTATTATACGT 57.179 29.630 12.87 0.00 0.00 3.57
2892 2976 9.908152 GTTTTCTGTTTTTGCCATACTAGTATT 57.092 29.630 12.87 0.00 0.00 1.89
2893 2977 9.073475 TGTTTTCTGTTTTTGCCATACTAGTAT 57.927 29.630 9.71 9.71 0.00 2.12
2894 2978 8.453238 TGTTTTCTGTTTTTGCCATACTAGTA 57.547 30.769 4.77 4.77 0.00 1.82
2895 2979 7.068226 ACTGTTTTCTGTTTTTGCCATACTAGT 59.932 33.333 0.00 0.00 0.00 2.57
2896 2980 7.425606 ACTGTTTTCTGTTTTTGCCATACTAG 58.574 34.615 0.00 0.00 0.00 2.57
2897 2981 7.341445 ACTGTTTTCTGTTTTTGCCATACTA 57.659 32.000 0.00 0.00 0.00 1.82
2898 2982 6.220726 ACTGTTTTCTGTTTTTGCCATACT 57.779 33.333 0.00 0.00 0.00 2.12
2899 2983 6.640907 CCTACTGTTTTCTGTTTTTGCCATAC 59.359 38.462 0.00 0.00 34.05 2.39
2900 2984 6.547880 TCCTACTGTTTTCTGTTTTTGCCATA 59.452 34.615 0.00 0.00 34.05 2.74
2901 2985 5.362430 TCCTACTGTTTTCTGTTTTTGCCAT 59.638 36.000 0.00 0.00 34.05 4.40
2902 2986 4.707448 TCCTACTGTTTTCTGTTTTTGCCA 59.293 37.500 0.00 0.00 34.05 4.92
2903 2987 5.163550 ACTCCTACTGTTTTCTGTTTTTGCC 60.164 40.000 0.00 0.00 34.05 4.52
2904 2988 5.743872 CACTCCTACTGTTTTCTGTTTTTGC 59.256 40.000 0.00 0.00 34.05 3.68
2905 2989 6.265577 CCACTCCTACTGTTTTCTGTTTTTG 58.734 40.000 0.00 0.00 34.05 2.44
2906 2990 5.359860 CCCACTCCTACTGTTTTCTGTTTTT 59.640 40.000 0.00 0.00 34.05 1.94
2907 2991 4.887655 CCCACTCCTACTGTTTTCTGTTTT 59.112 41.667 0.00 0.00 34.05 2.43
2908 2992 4.165372 TCCCACTCCTACTGTTTTCTGTTT 59.835 41.667 0.00 0.00 34.05 2.83
2909 2993 3.714798 TCCCACTCCTACTGTTTTCTGTT 59.285 43.478 0.00 0.00 34.05 3.16
2910 2994 3.314693 TCCCACTCCTACTGTTTTCTGT 58.685 45.455 0.00 0.00 36.09 3.41
2911 2995 4.559862 ATCCCACTCCTACTGTTTTCTG 57.440 45.455 0.00 0.00 0.00 3.02
2912 2996 6.473758 GTTTATCCCACTCCTACTGTTTTCT 58.526 40.000 0.00 0.00 0.00 2.52
2913 2997 5.350640 CGTTTATCCCACTCCTACTGTTTTC 59.649 44.000 0.00 0.00 0.00 2.29
2914 2998 5.012354 TCGTTTATCCCACTCCTACTGTTTT 59.988 40.000 0.00 0.00 0.00 2.43
2915 2999 4.529377 TCGTTTATCCCACTCCTACTGTTT 59.471 41.667 0.00 0.00 0.00 2.83
2916 3000 4.091549 TCGTTTATCCCACTCCTACTGTT 58.908 43.478 0.00 0.00 0.00 3.16
2917 3001 3.700038 CTCGTTTATCCCACTCCTACTGT 59.300 47.826 0.00 0.00 0.00 3.55
2918 3002 3.700038 ACTCGTTTATCCCACTCCTACTG 59.300 47.826 0.00 0.00 0.00 2.74
2919 3003 3.978610 ACTCGTTTATCCCACTCCTACT 58.021 45.455 0.00 0.00 0.00 2.57
2920 3004 4.732672 AACTCGTTTATCCCACTCCTAC 57.267 45.455 0.00 0.00 0.00 3.18
2921 3005 6.491403 GGTATAACTCGTTTATCCCACTCCTA 59.509 42.308 0.00 0.00 32.31 2.94
2922 3006 5.303845 GGTATAACTCGTTTATCCCACTCCT 59.696 44.000 0.00 0.00 32.31 3.69
2923 3007 5.510349 GGGTATAACTCGTTTATCCCACTCC 60.510 48.000 14.63 0.00 37.41 3.85
2924 3008 5.303845 AGGGTATAACTCGTTTATCCCACTC 59.696 44.000 18.07 6.41 38.63 3.51
2925 3009 5.214293 AGGGTATAACTCGTTTATCCCACT 58.786 41.667 18.07 7.94 38.63 4.00
2926 3010 5.510349 GGAGGGTATAACTCGTTTATCCCAC 60.510 48.000 18.07 14.66 38.63 4.61
2927 3011 4.590222 GGAGGGTATAACTCGTTTATCCCA 59.410 45.833 18.07 0.00 38.63 4.37
2928 3012 4.590222 TGGAGGGTATAACTCGTTTATCCC 59.410 45.833 13.15 13.15 37.57 3.85
2929 3013 5.303845 ACTGGAGGGTATAACTCGTTTATCC 59.696 44.000 0.00 0.00 35.82 2.59
2930 3014 6.402456 ACTGGAGGGTATAACTCGTTTATC 57.598 41.667 0.00 0.00 35.82 1.75
2931 3015 6.492772 CCTACTGGAGGGTATAACTCGTTTAT 59.507 42.308 0.00 0.00 42.39 1.40
2932 3016 5.829924 CCTACTGGAGGGTATAACTCGTTTA 59.170 44.000 0.00 0.00 42.39 2.01
2933 3017 4.648307 CCTACTGGAGGGTATAACTCGTTT 59.352 45.833 0.00 0.00 42.39 3.60
2934 3018 4.213513 CCTACTGGAGGGTATAACTCGTT 58.786 47.826 0.00 0.00 42.39 3.85
2935 3019 3.830121 CCTACTGGAGGGTATAACTCGT 58.170 50.000 0.00 0.00 42.39 4.18
2936 3020 2.557490 GCCTACTGGAGGGTATAACTCG 59.443 54.545 8.30 0.00 46.81 4.18
2937 3021 2.557490 CGCCTACTGGAGGGTATAACTC 59.443 54.545 8.30 0.00 46.81 3.01
2938 3022 2.176364 TCGCCTACTGGAGGGTATAACT 59.824 50.000 8.30 0.00 46.81 2.24
2939 3023 2.557490 CTCGCCTACTGGAGGGTATAAC 59.443 54.545 8.30 0.00 46.81 1.89
2940 3024 2.490351 CCTCGCCTACTGGAGGGTATAA 60.490 54.545 8.30 0.00 46.81 0.98
2941 3025 1.075050 CCTCGCCTACTGGAGGGTATA 59.925 57.143 8.30 0.00 46.81 1.47
2942 3026 0.178958 CCTCGCCTACTGGAGGGTAT 60.179 60.000 8.30 0.00 46.81 2.73
2943 3027 1.229359 CCTCGCCTACTGGAGGGTA 59.771 63.158 8.30 0.00 46.81 3.69
2944 3028 2.042843 CCTCGCCTACTGGAGGGT 60.043 66.667 8.30 0.00 46.81 4.34
2947 3031 1.323271 TTCTGCCTCGCCTACTGGAG 61.323 60.000 0.00 0.00 34.57 3.86
2948 3032 1.304962 TTCTGCCTCGCCTACTGGA 60.305 57.895 0.00 0.00 34.57 3.86
2949 3033 1.142748 CTTCTGCCTCGCCTACTGG 59.857 63.158 0.00 0.00 0.00 4.00
2950 3034 1.520342 GCTTCTGCCTCGCCTACTG 60.520 63.158 0.00 0.00 0.00 2.74
2951 3035 2.896443 GCTTCTGCCTCGCCTACT 59.104 61.111 0.00 0.00 0.00 2.57
2988 3072 0.110486 GACAAGAAGGCCACCAAGGA 59.890 55.000 5.01 0.00 41.22 3.36
2989 3073 1.237285 CGACAAGAAGGCCACCAAGG 61.237 60.000 5.01 0.00 41.84 3.61
2990 3074 1.237285 CCGACAAGAAGGCCACCAAG 61.237 60.000 5.01 0.00 0.00 3.61
2991 3075 1.228124 CCGACAAGAAGGCCACCAA 60.228 57.895 5.01 0.00 0.00 3.67
2992 3076 2.429930 CCGACAAGAAGGCCACCA 59.570 61.111 5.01 0.00 0.00 4.17
2998 3082 1.153745 CTCGAGGCCGACAAGAAGG 60.154 63.158 3.91 0.00 40.30 3.46
2999 3083 1.807573 GCTCGAGGCCGACAAGAAG 60.808 63.158 15.58 0.00 40.30 2.85
3000 3084 1.816863 AAGCTCGAGGCCGACAAGAA 61.817 55.000 15.58 0.00 43.05 2.52
3001 3085 2.214181 GAAGCTCGAGGCCGACAAGA 62.214 60.000 15.58 0.00 43.05 3.02
3002 3086 1.807573 GAAGCTCGAGGCCGACAAG 60.808 63.158 15.58 0.00 43.05 3.16
3003 3087 2.214181 GAGAAGCTCGAGGCCGACAA 62.214 60.000 15.58 0.00 43.05 3.18
3004 3088 2.676822 AGAAGCTCGAGGCCGACA 60.677 61.111 15.58 0.00 43.05 4.35
3005 3089 2.103340 GAGAAGCTCGAGGCCGAC 59.897 66.667 15.58 0.00 43.05 4.79
3006 3090 2.361230 TGAGAAGCTCGAGGCCGA 60.361 61.111 15.58 0.00 43.05 5.54
3007 3091 2.103934 CTGAGAAGCTCGAGGCCG 59.896 66.667 15.58 0.00 43.05 6.13
3008 3092 2.202864 GCTGAGAAGCTCGAGGCC 60.203 66.667 15.58 0.00 43.05 5.19
3009 3093 2.581953 CGCTGAGAAGCTCGAGGC 60.582 66.667 15.58 6.03 42.19 4.70
3010 3094 1.226547 GTCGCTGAGAAGCTCGAGG 60.227 63.158 15.58 0.00 32.35 4.63
3011 3095 1.226547 GGTCGCTGAGAAGCTCGAG 60.227 63.158 8.45 8.45 32.35 4.04
3012 3096 1.927608 CTGGTCGCTGAGAAGCTCGA 61.928 60.000 0.00 0.00 32.35 4.04
3013 3097 1.515952 CTGGTCGCTGAGAAGCTCG 60.516 63.158 0.00 0.00 32.35 5.03
3014 3098 0.457681 GTCTGGTCGCTGAGAAGCTC 60.458 60.000 0.00 0.00 0.00 4.09
3015 3099 1.589113 GTCTGGTCGCTGAGAAGCT 59.411 57.895 0.00 0.00 0.00 3.74
3016 3100 1.803519 CGTCTGGTCGCTGAGAAGC 60.804 63.158 0.00 0.00 0.00 3.86
3017 3101 0.453793 ATCGTCTGGTCGCTGAGAAG 59.546 55.000 0.00 0.00 0.00 2.85
3018 3102 0.452184 GATCGTCTGGTCGCTGAGAA 59.548 55.000 0.00 0.00 0.00 2.87
3019 3103 1.706287 CGATCGTCTGGTCGCTGAGA 61.706 60.000 7.03 0.00 0.00 3.27
3020 3104 1.297967 CGATCGTCTGGTCGCTGAG 60.298 63.158 7.03 0.00 0.00 3.35
3021 3105 2.761195 CCGATCGTCTGGTCGCTGA 61.761 63.158 15.09 0.00 36.57 4.26
3022 3106 2.278206 CCGATCGTCTGGTCGCTG 60.278 66.667 15.09 0.00 36.57 5.18
3023 3107 4.194720 GCCGATCGTCTGGTCGCT 62.195 66.667 15.09 0.00 36.57 4.93
3033 3117 1.368969 CTTAGTCCGACGCCGATCG 60.369 63.158 8.51 8.51 45.38 3.69
3034 3118 0.316854 GTCTTAGTCCGACGCCGATC 60.317 60.000 0.00 0.00 38.22 3.69
3035 3119 1.028330 TGTCTTAGTCCGACGCCGAT 61.028 55.000 0.00 0.00 38.22 4.18
3036 3120 1.028330 ATGTCTTAGTCCGACGCCGA 61.028 55.000 0.00 0.00 38.22 5.54
3037 3121 0.866061 CATGTCTTAGTCCGACGCCG 60.866 60.000 0.00 0.00 34.17 6.46
3038 3122 0.454600 TCATGTCTTAGTCCGACGCC 59.545 55.000 0.00 0.00 34.17 5.68
3039 3123 2.120232 CATCATGTCTTAGTCCGACGC 58.880 52.381 0.00 0.00 34.17 5.19
3040 3124 3.692791 TCATCATGTCTTAGTCCGACG 57.307 47.619 0.00 0.00 34.17 5.12
3041 3125 5.188327 TCATCATCATGTCTTAGTCCGAC 57.812 43.478 0.00 0.00 0.00 4.79
3042 3126 5.536161 TCATCATCATCATGTCTTAGTCCGA 59.464 40.000 0.00 0.00 0.00 4.55
3043 3127 5.776744 TCATCATCATCATGTCTTAGTCCG 58.223 41.667 0.00 0.00 0.00 4.79
3044 3128 7.384660 GTCTTCATCATCATCATGTCTTAGTCC 59.615 40.741 0.00 0.00 0.00 3.85
3045 3129 7.114670 CGTCTTCATCATCATCATGTCTTAGTC 59.885 40.741 0.00 0.00 0.00 2.59
3046 3130 6.922407 CGTCTTCATCATCATCATGTCTTAGT 59.078 38.462 0.00 0.00 0.00 2.24
3047 3131 7.114670 GTCGTCTTCATCATCATCATGTCTTAG 59.885 40.741 0.00 0.00 0.00 2.18
3048 3132 6.920210 GTCGTCTTCATCATCATCATGTCTTA 59.080 38.462 0.00 0.00 0.00 2.10
3049 3133 5.752472 GTCGTCTTCATCATCATCATGTCTT 59.248 40.000 0.00 0.00 0.00 3.01
3050 3134 5.288015 GTCGTCTTCATCATCATCATGTCT 58.712 41.667 0.00 0.00 0.00 3.41
3051 3135 5.573296 GTCGTCTTCATCATCATCATGTC 57.427 43.478 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.