Multiple sequence alignment - TraesCS2B01G391800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G391800 chr2B 100.000 4910 0 0 1 4910 556197464 556202373 0.000000e+00 9068
1 TraesCS2B01G391800 chr2B 93.137 102 5 2 4468 4568 160691310 160691410 1.100000e-31 148
2 TraesCS2B01G391800 chr2B 89.474 114 7 5 4474 4584 648033139 648033028 6.630000e-29 139
3 TraesCS2B01G391800 chr2A 95.492 2285 80 7 2198 4473 617646732 617649002 0.000000e+00 3627
4 TraesCS2B01G391800 chr2A 92.181 1637 72 22 253 1874 617645111 617646706 0.000000e+00 2263
5 TraesCS2B01G391800 chr2A 93.539 356 17 2 4557 4910 617654757 617655108 4.350000e-145 525
6 TraesCS2B01G391800 chr2A 94.961 258 10 3 1 256 617644830 617645086 7.660000e-108 401
7 TraesCS2B01G391800 chr2D 94.230 2097 81 14 2187 4252 475090755 475092842 0.000000e+00 3166
8 TraesCS2B01G391800 chr2D 90.881 1645 91 30 253 1874 475089119 475090727 0.000000e+00 2152
9 TraesCS2B01G391800 chr2D 92.938 354 20 2 4558 4910 475093066 475093415 1.220000e-140 510
10 TraesCS2B01G391800 chr2D 94.949 198 8 2 2195 2391 20825461 20825265 4.770000e-80 309
11 TraesCS2B01G391800 chr2D 95.833 192 7 1 2198 2389 60313557 60313367 4.770000e-80 309
12 TraesCS2B01G391800 chr2D 92.562 121 8 1 1859 1979 111321394 111321513 6.530000e-39 172
13 TraesCS2B01G391800 chr2D 98.387 62 1 0 4378 4439 475092893 475092954 5.200000e-20 110
14 TraesCS2B01G391800 chr4B 91.883 579 40 5 1300 1874 564752347 564751772 0.000000e+00 802
15 TraesCS2B01G391800 chr4B 96.354 192 6 1 2198 2389 672586961 672586771 1.030000e-81 315
16 TraesCS2B01G391800 chr4B 97.222 108 3 0 1872 1979 115062717 115062824 3.020000e-42 183
17 TraesCS2B01G391800 chr4B 96.396 111 4 0 1873 1983 330778909 330778799 3.020000e-42 183
18 TraesCS2B01G391800 chr7A 91.192 579 44 5 1300 1874 289953156 289953731 0.000000e+00 780
19 TraesCS2B01G391800 chr1B 91.192 579 44 5 1300 1874 124074211 124073636 0.000000e+00 780
20 TraesCS2B01G391800 chr1B 91.019 579 44 6 1300 1874 85713213 85712639 0.000000e+00 774
21 TraesCS2B01G391800 chr1B 96.354 192 6 1 2198 2389 85712613 85712423 1.030000e-81 315
22 TraesCS2B01G391800 chr1B 90.179 112 4 6 4473 4582 7551885 7551779 6.630000e-29 139
23 TraesCS2B01G391800 chr5A 91.019 579 45 5 1300 1874 671854617 671855192 0.000000e+00 774
24 TraesCS2B01G391800 chr5A 90.909 110 5 3 4455 4559 640692665 640692774 5.120000e-30 143
25 TraesCS2B01G391800 chr4A 90.893 582 46 5 1297 1874 738693187 738693765 0.000000e+00 774
26 TraesCS2B01G391800 chr4A 90.767 574 45 6 1300 1869 493269715 493269146 0.000000e+00 760
27 TraesCS2B01G391800 chr4A 96.354 192 6 1 2198 2389 738693791 738693981 1.030000e-81 315
28 TraesCS2B01G391800 chrUn 98.942 189 2 0 2010 2198 19890769 19890957 6.090000e-89 339
29 TraesCS2B01G391800 chrUn 94.271 192 9 1 2198 2389 126389252 126389441 4.810000e-75 292
30 TraesCS2B01G391800 chrUn 93.519 108 3 4 4470 4575 122302097 122302202 1.830000e-34 158
31 TraesCS2B01G391800 chrUn 95.745 94 2 2 4475 4566 82709980 82710073 3.060000e-32 150
32 TraesCS2B01G391800 chrUn 95.652 92 3 1 4471 4561 15864256 15864347 3.960000e-31 147
33 TraesCS2B01G391800 chrUn 90.741 108 7 3 4474 4580 97273099 97273204 1.840000e-29 141
34 TraesCS2B01G391800 chr5D 98.942 189 2 0 2010 2198 236022595 236022783 6.090000e-89 339
35 TraesCS2B01G391800 chr5D 95.312 192 8 1 2198 2389 551209322 551209512 2.220000e-78 303
36 TraesCS2B01G391800 chr5D 95.575 113 5 0 1868 1980 408792005 408791893 1.090000e-41 182
37 TraesCS2B01G391800 chr5B 98.942 189 2 0 2009 2197 567157835 567157647 6.090000e-89 339
38 TraesCS2B01G391800 chr7B 99.459 185 1 0 2013 2197 168758380 168758196 2.190000e-88 337
39 TraesCS2B01G391800 chr7B 96.354 192 6 1 2198 2389 113941341 113941151 1.030000e-81 315
40 TraesCS2B01G391800 chr7B 94.500 200 8 3 2194 2393 671363601 671363405 6.170000e-79 305
41 TraesCS2B01G391800 chr7B 94.017 117 7 0 1868 1984 297402297 297402181 1.400000e-40 178
42 TraesCS2B01G391800 chr7B 92.523 107 4 4 4464 4567 709505010 709504905 3.060000e-32 150
43 TraesCS2B01G391800 chr3B 98.942 189 1 1 2010 2197 226085872 226085684 2.190000e-88 337
44 TraesCS2B01G391800 chr3B 96.875 192 6 0 2198 2389 777670623 777670814 6.130000e-84 322
45 TraesCS2B01G391800 chr3B 96.364 110 4 0 1870 1979 425384039 425384148 1.090000e-41 182
46 TraesCS2B01G391800 chr6D 98.925 186 2 0 2013 2198 291261939 291261754 2.830000e-87 333
47 TraesCS2B01G391800 chr6D 98.413 189 3 0 2010 2198 381237100 381237288 2.830000e-87 333
48 TraesCS2B01G391800 chr6D 96.629 89 2 1 4471 4558 408688794 408688706 3.960000e-31 147
49 TraesCS2B01G391800 chr6D 95.604 91 3 1 4474 4563 379808968 379809058 1.420000e-30 145
50 TraesCS2B01G391800 chr6D 96.552 87 2 1 4474 4559 383526423 383526509 5.120000e-30 143
51 TraesCS2B01G391800 chr6D 96.512 86 2 1 4474 4558 400294353 400294268 1.840000e-29 141
52 TraesCS2B01G391800 chr6D 90.000 110 7 4 4474 4580 304427807 304427915 6.630000e-29 139
53 TraesCS2B01G391800 chr6D 95.402 87 3 1 4474 4559 305130426 305130340 2.380000e-28 137
54 TraesCS2B01G391800 chr6D 95.402 87 2 2 4474 4559 385666131 385666046 2.380000e-28 137
55 TraesCS2B01G391800 chr6D 95.402 87 2 2 4474 4558 470724260 470724174 2.380000e-28 137
56 TraesCS2B01G391800 chr6D 95.349 86 3 1 4474 4558 26359216 26359301 8.570000e-28 135
57 TraesCS2B01G391800 chr6D 92.473 93 5 2 4470 4561 145462375 145462284 1.110000e-26 132
58 TraesCS2B01G391800 chr6D 91.000 100 5 4 4471 4568 160314782 160314879 1.110000e-26 132
59 TraesCS2B01G391800 chr1D 98.925 186 2 0 2013 2198 86848795 86848610 2.830000e-87 333
60 TraesCS2B01G391800 chr1D 98.925 186 2 0 2013 2198 383825487 383825302 2.830000e-87 333
61 TraesCS2B01G391800 chr1D 95.536 112 5 0 1869 1980 429589000 429589111 3.900000e-41 180
62 TraesCS2B01G391800 chr1D 97.778 90 1 1 4473 4561 53262048 53261959 2.370000e-33 154
63 TraesCS2B01G391800 chr1D 93.204 103 4 3 4476 4577 12153558 12153658 1.100000e-31 148
64 TraesCS2B01G391800 chr1D 93.204 103 4 3 4476 4577 13295820 13295720 1.100000e-31 148
65 TraesCS2B01G391800 chr1D 94.737 95 3 2 4473 4566 97421642 97421549 3.960000e-31 147
66 TraesCS2B01G391800 chr1D 96.629 89 2 1 4474 4561 107173677 107173589 3.960000e-31 147
67 TraesCS2B01G391800 chr1D 96.552 87 3 0 4474 4560 481558774 481558688 1.420000e-30 145
68 TraesCS2B01G391800 chr7D 96.354 192 6 1 2198 2389 543342602 543342412 1.030000e-81 315
69 TraesCS2B01G391800 chr7D 95.833 192 7 1 2198 2389 26668997 26668807 4.770000e-80 309
70 TraesCS2B01G391800 chr7D 95.833 192 7 1 2198 2389 40629504 40629314 4.770000e-80 309
71 TraesCS2B01G391800 chr7D 95.833 192 7 1 2198 2389 613747990 613748180 4.770000e-80 309
72 TraesCS2B01G391800 chr7D 93.204 103 4 3 4476 4577 21884033 21884133 1.100000e-31 148
73 TraesCS2B01G391800 chr7D 93.204 103 4 3 4476 4577 28893357 28893257 1.100000e-31 148
74 TraesCS2B01G391800 chr3D 95.833 192 7 1 2198 2389 98584812 98584622 4.770000e-80 309
75 TraesCS2B01G391800 chr3D 94.792 192 9 1 2198 2389 501322486 501322296 1.030000e-76 298
76 TraesCS2B01G391800 chr3D 94.792 192 9 1 2198 2389 580207480 580207670 1.030000e-76 298
77 TraesCS2B01G391800 chr3D 94.792 192 9 1 2198 2389 583552942 583552752 1.030000e-76 298
78 TraesCS2B01G391800 chr3D 95.495 111 5 0 1873 1983 41211720 41211610 1.400000e-40 178
79 TraesCS2B01G391800 chr4D 94.271 192 10 1 2198 2389 448038049 448037859 4.810000e-75 292
80 TraesCS2B01G391800 chr4D 93.939 99 5 1 4465 4562 9296458 9296556 1.100000e-31 148
81 TraesCS2B01G391800 chr3A 94.737 114 6 0 1870 1983 192851421 192851308 1.400000e-40 178
82 TraesCS2B01G391800 chr3A 97.802 91 1 1 4474 4563 550433878 550433968 6.580000e-34 156
83 TraesCS2B01G391800 chr1A 94.118 102 1 5 4474 4572 56623811 56623712 3.060000e-32 150
84 TraesCS2B01G391800 chr6A 93.939 99 4 2 4474 4570 369574638 369574540 1.100000e-31 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G391800 chr2B 556197464 556202373 4909 False 9068.0 9068 100.000000 1 4910 1 chr2B.!!$F2 4909
1 TraesCS2B01G391800 chr2A 617644830 617649002 4172 False 2097.0 3627 94.211333 1 4473 3 chr2A.!!$F2 4472
2 TraesCS2B01G391800 chr2D 475089119 475093415 4296 False 1484.5 3166 94.109000 253 4910 4 chr2D.!!$F2 4657
3 TraesCS2B01G391800 chr4B 564751772 564752347 575 True 802.0 802 91.883000 1300 1874 1 chr4B.!!$R2 574
4 TraesCS2B01G391800 chr7A 289953156 289953731 575 False 780.0 780 91.192000 1300 1874 1 chr7A.!!$F1 574
5 TraesCS2B01G391800 chr1B 124073636 124074211 575 True 780.0 780 91.192000 1300 1874 1 chr1B.!!$R2 574
6 TraesCS2B01G391800 chr1B 85712423 85713213 790 True 544.5 774 93.686500 1300 2389 2 chr1B.!!$R3 1089
7 TraesCS2B01G391800 chr5A 671854617 671855192 575 False 774.0 774 91.019000 1300 1874 1 chr5A.!!$F2 574
8 TraesCS2B01G391800 chr4A 493269146 493269715 569 True 760.0 760 90.767000 1300 1869 1 chr4A.!!$R1 569
9 TraesCS2B01G391800 chr4A 738693187 738693981 794 False 544.5 774 93.623500 1297 2389 2 chr4A.!!$F1 1092

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 565 0.109723 GAGTTTGGGGTGTACCTGCA 59.890 55.0 0.44 0.00 40.03 4.41 F
983 1036 0.953471 CGTCGCCATTTCCACTTCCA 60.953 55.0 0.00 0.00 0.00 3.53 F
1888 1947 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.0 13.34 13.34 0.00 4.55 F
2143 2202 0.042274 GCAATGTGTTTTGCCAACGC 60.042 50.0 3.10 3.10 44.94 4.84 F
3284 3346 0.032017 GGAGAGGACTTAGGCCAGGA 60.032 60.0 6.97 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1407 1461 0.102844 ATTATGCATGGCACCAACGC 59.897 50.0 10.16 7.35 43.04 4.84 R
2131 2190 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.0 0.00 0.00 42.47 2.43 R
3284 3346 0.038455 AGACACAGTCTCGGGCTACT 59.962 55.0 0.00 0.00 38.71 2.57 R
3904 3966 1.117994 TCTCTGCCTGCCATCTACAG 58.882 55.0 0.00 0.00 34.82 2.74 R
4460 4634 0.036671 GGGAGTAACTGGGAACACGG 60.037 60.0 0.00 0.00 35.60 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 5.292589 GCATGCCATACAAATTTGAAAGAGG 59.707 40.000 24.64 17.15 0.00 3.69
66 67 4.322650 GCCATACAAATTTGAAAGAGGGCA 60.323 41.667 24.64 0.00 36.57 5.36
146 147 4.096382 CGTTTTGGCAAGATATTAGCAGGT 59.904 41.667 0.00 0.00 0.00 4.00
218 220 5.940470 ACCTATATGGCACTAGCATTAAAGC 59.060 40.000 0.00 0.00 44.61 3.51
226 228 4.051922 CACTAGCATTAAAGCCTACCTCG 58.948 47.826 0.00 0.00 34.23 4.63
238 240 1.502231 CTACCTCGATTTCGGCATGG 58.498 55.000 0.00 1.33 40.29 3.66
325 355 4.245660 CAATCTCGTCCAGCTAAAACTCA 58.754 43.478 0.00 0.00 0.00 3.41
334 364 5.351740 GTCCAGCTAAAACTCACAACTATCC 59.648 44.000 0.00 0.00 0.00 2.59
335 365 5.012664 TCCAGCTAAAACTCACAACTATCCA 59.987 40.000 0.00 0.00 0.00 3.41
336 366 5.882557 CCAGCTAAAACTCACAACTATCCAT 59.117 40.000 0.00 0.00 0.00 3.41
337 367 7.047891 CCAGCTAAAACTCACAACTATCCATA 58.952 38.462 0.00 0.00 0.00 2.74
339 369 9.113838 CAGCTAAAACTCACAACTATCCATAAT 57.886 33.333 0.00 0.00 0.00 1.28
352 391 7.726033 ACTATCCATAATACTAGCTTCCCTG 57.274 40.000 0.00 0.00 0.00 4.45
358 397 1.781786 TACTAGCTTCCCTGGAGCTG 58.218 55.000 17.58 11.01 39.46 4.24
382 421 0.189574 TCCACCAATGCTCCCCAAAA 59.810 50.000 0.00 0.00 0.00 2.44
405 444 2.589442 GCAACCCGACGGACAACA 60.589 61.111 17.49 0.00 0.00 3.33
407 446 1.866237 CAACCCGACGGACAACATG 59.134 57.895 17.49 0.00 0.00 3.21
454 493 2.582202 CTACTCGAAACGGCCGCGTA 62.582 60.000 28.58 15.20 0.00 4.42
484 523 5.237779 TGGAAAAACGAGAATAAGTGGACAC 59.762 40.000 0.00 0.00 0.00 3.67
486 525 4.345859 AAACGAGAATAAGTGGACACCA 57.654 40.909 0.00 0.00 0.00 4.17
515 554 2.939103 CGCCTAAGATTCAGAGTTTGGG 59.061 50.000 0.00 0.00 0.00 4.12
526 565 0.109723 GAGTTTGGGGTGTACCTGCA 59.890 55.000 0.44 0.00 40.03 4.41
603 642 4.717313 GGCCGGCGGAGAAGGTTT 62.717 66.667 33.44 0.00 0.00 3.27
796 836 1.363807 GGCACACCACTTTGGAAGC 59.636 57.895 0.00 0.00 40.96 3.86
802 842 2.102925 ACACCACTTTGGAAGCCAATTG 59.897 45.455 0.00 0.00 43.55 2.32
868 908 1.238439 CCAAGATTCGTGTGCAGGTT 58.762 50.000 0.00 0.00 0.00 3.50
929 970 3.712881 GCGGCGTTCCAGTGTGTC 61.713 66.667 9.37 0.00 0.00 3.67
930 971 2.279851 CGGCGTTCCAGTGTGTCA 60.280 61.111 0.00 0.00 0.00 3.58
931 972 2.594962 CGGCGTTCCAGTGTGTCAC 61.595 63.158 0.00 0.00 34.10 3.67
932 973 2.251642 GGCGTTCCAGTGTGTCACC 61.252 63.158 0.00 0.00 34.49 4.02
934 975 1.145156 CGTTCCAGTGTGTCACCCA 59.855 57.895 0.00 0.00 34.49 4.51
974 1027 3.894547 AACCTCCGCGTCGCCATTT 62.895 57.895 12.44 0.00 0.00 2.32
977 1030 4.380781 TCCGCGTCGCCATTTCCA 62.381 61.111 12.44 0.00 0.00 3.53
978 1031 4.160635 CCGCGTCGCCATTTCCAC 62.161 66.667 12.44 0.00 0.00 4.02
979 1032 3.118454 CGCGTCGCCATTTCCACT 61.118 61.111 12.44 0.00 0.00 4.00
980 1033 2.677003 CGCGTCGCCATTTCCACTT 61.677 57.895 12.44 0.00 0.00 3.16
981 1034 1.134694 GCGTCGCCATTTCCACTTC 59.865 57.895 5.75 0.00 0.00 3.01
982 1035 1.794222 CGTCGCCATTTCCACTTCC 59.206 57.895 0.00 0.00 0.00 3.46
983 1036 0.953471 CGTCGCCATTTCCACTTCCA 60.953 55.000 0.00 0.00 0.00 3.53
1179 1232 2.305009 CCTCAGATTCTCCCATTTGCC 58.695 52.381 0.00 0.00 0.00 4.52
1260 1313 1.382692 GCAGAAGCAGAAGATGGGGC 61.383 60.000 0.00 0.00 41.58 5.80
1298 1351 2.573869 CTCATGCACGTCTCCGGT 59.426 61.111 0.00 0.00 38.78 5.28
1315 1368 1.172812 GGTCCTGCAGGTGTTTGGTC 61.173 60.000 31.58 12.47 36.34 4.02
1371 1424 3.436243 TCCTTTGTTTGGTGGTTCTGTT 58.564 40.909 0.00 0.00 0.00 3.16
1376 1429 3.157881 TGTTTGGTGGTTCTGTTGTGAA 58.842 40.909 0.00 0.00 0.00 3.18
1380 1433 1.065551 GGTGGTTCTGTTGTGAACTGC 59.934 52.381 7.22 1.85 44.02 4.40
1383 1436 1.668751 GGTTCTGTTGTGAACTGCGAA 59.331 47.619 7.22 0.00 44.02 4.70
1385 1438 3.496884 GGTTCTGTTGTGAACTGCGAATA 59.503 43.478 7.22 0.00 44.02 1.75
1386 1439 4.377431 GGTTCTGTTGTGAACTGCGAATAG 60.377 45.833 7.22 0.00 44.02 1.73
1391 1444 2.337583 TGTGAACTGCGAATAGAGTGC 58.662 47.619 0.00 0.00 0.00 4.40
1406 1460 7.593273 CGAATAGAGTGCTTAAATCTTCGATCT 59.407 37.037 0.00 0.00 29.15 2.75
1407 1461 8.586570 AATAGAGTGCTTAAATCTTCGATCTG 57.413 34.615 0.00 0.00 0.00 2.90
1409 1463 3.553511 AGTGCTTAAATCTTCGATCTGCG 59.446 43.478 0.00 0.00 42.69 5.18
1413 1467 4.783450 GCTTAAATCTTCGATCTGCGTTGG 60.783 45.833 0.00 0.00 41.80 3.77
1449 1507 5.087323 TGACTAGTGGAGTTGAGAGGATTT 58.913 41.667 0.00 0.00 39.06 2.17
1544 1602 5.618236 AGTAACAGTCCATCATGATCCATG 58.382 41.667 4.86 5.31 42.60 3.66
1553 1611 3.851458 TCATGATCCATGTAGCTTGCT 57.149 42.857 0.00 0.00 41.98 3.91
1743 1801 5.238214 CCAAACATAGATCTAGAAGCTTGCC 59.762 44.000 2.10 0.00 0.00 4.52
1810 1868 9.844790 CTTGCATAAACATTTCACTTCATTCTA 57.155 29.630 0.00 0.00 0.00 2.10
1879 1938 9.661954 TTAGAGATTCTAATTCATGTACTCCCT 57.338 33.333 0.00 0.00 34.30 4.20
1880 1939 8.189119 AGAGATTCTAATTCATGTACTCCCTC 57.811 38.462 0.00 0.00 0.00 4.30
1881 1940 7.234577 AGAGATTCTAATTCATGTACTCCCTCC 59.765 40.741 0.00 0.00 0.00 4.30
1882 1941 5.531122 TTCTAATTCATGTACTCCCTCCG 57.469 43.478 0.00 0.00 0.00 4.63
1883 1942 4.543689 TCTAATTCATGTACTCCCTCCGT 58.456 43.478 0.00 0.00 0.00 4.69
1884 1943 4.960469 TCTAATTCATGTACTCCCTCCGTT 59.040 41.667 0.00 0.00 0.00 4.44
1885 1944 3.821421 ATTCATGTACTCCCTCCGTTC 57.179 47.619 0.00 0.00 0.00 3.95
1886 1945 1.100510 TCATGTACTCCCTCCGTTCG 58.899 55.000 0.00 0.00 0.00 3.95
1887 1946 0.102481 CATGTACTCCCTCCGTTCGG 59.898 60.000 4.74 4.74 0.00 4.30
1888 1947 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
1889 1948 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
1890 1949 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
1891 1950 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
1892 1951 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1893 1952 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1894 1953 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1895 1954 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
1896 1955 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
1897 1956 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
1898 1957 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
1899 1958 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79
1900 1959 1.135315 CCGTTCGGAATTACTCGTCCA 60.135 52.381 5.19 0.00 33.10 4.02
1901 1960 2.598589 CGTTCGGAATTACTCGTCCAA 58.401 47.619 0.00 0.00 33.10 3.53
1902 1961 2.988493 CGTTCGGAATTACTCGTCCAAA 59.012 45.455 0.00 0.00 33.10 3.28
1903 1962 3.429543 CGTTCGGAATTACTCGTCCAAAA 59.570 43.478 0.00 0.00 33.10 2.44
1904 1963 4.084433 CGTTCGGAATTACTCGTCCAAAAA 60.084 41.667 0.00 0.00 33.10 1.94
1943 2002 9.277783 AGATGCATTTTAGTTGTAGATACATCC 57.722 33.333 0.00 0.00 35.89 3.51
1944 2003 8.978874 ATGCATTTTAGTTGTAGATACATCCA 57.021 30.769 0.00 0.00 35.89 3.41
1945 2004 8.978874 TGCATTTTAGTTGTAGATACATCCAT 57.021 30.769 0.00 0.00 35.89 3.41
1946 2005 9.407380 TGCATTTTAGTTGTAGATACATCCATT 57.593 29.630 0.00 0.00 35.89 3.16
1972 2031 9.672086 TTTTATGACAAGTAATTTTGAACGGAG 57.328 29.630 0.00 0.00 0.00 4.63
1973 2032 5.682943 TGACAAGTAATTTTGAACGGAGG 57.317 39.130 0.00 0.00 0.00 4.30
1974 2033 4.517453 TGACAAGTAATTTTGAACGGAGGG 59.483 41.667 0.00 0.00 0.00 4.30
1975 2034 4.721132 ACAAGTAATTTTGAACGGAGGGA 58.279 39.130 0.00 0.00 0.00 4.20
1976 2035 4.760204 ACAAGTAATTTTGAACGGAGGGAG 59.240 41.667 0.00 0.00 0.00 4.30
1977 2036 4.635699 AGTAATTTTGAACGGAGGGAGT 57.364 40.909 0.00 0.00 0.00 3.85
1978 2037 5.750352 AGTAATTTTGAACGGAGGGAGTA 57.250 39.130 0.00 0.00 0.00 2.59
1996 2055 4.263506 GGAGTATGATGGTATCAAAGGGGG 60.264 50.000 0.00 0.00 43.50 5.40
2007 2066 3.713826 TCAAAGGGGGTCATTGTACTC 57.286 47.619 0.00 0.00 0.00 2.59
2008 2067 2.983192 TCAAAGGGGGTCATTGTACTCA 59.017 45.455 0.00 0.00 0.00 3.41
2012 2071 4.772886 AGGGGGTCATTGTACTCATAAC 57.227 45.455 0.00 0.00 0.00 1.89
2015 2074 5.908831 AGGGGGTCATTGTACTCATAACATA 59.091 40.000 0.00 0.00 0.00 2.29
2016 2075 6.043243 AGGGGGTCATTGTACTCATAACATAG 59.957 42.308 0.00 0.00 0.00 2.23
2019 2078 7.441458 GGGGTCATTGTACTCATAACATAGTTC 59.559 40.741 0.00 0.00 0.00 3.01
2020 2079 7.985184 GGGTCATTGTACTCATAACATAGTTCA 59.015 37.037 0.00 0.00 0.00 3.18
2021 2080 9.378551 GGTCATTGTACTCATAACATAGTTCAA 57.621 33.333 0.00 0.00 37.39 2.69
2046 2105 3.509266 GCTAGGCGTTAATTGTGCG 57.491 52.632 0.00 0.00 0.00 5.34
2047 2106 0.725117 GCTAGGCGTTAATTGTGCGT 59.275 50.000 0.00 0.00 0.00 5.24
2048 2107 1.129811 GCTAGGCGTTAATTGTGCGTT 59.870 47.619 0.00 0.00 0.00 4.84
2049 2108 2.413634 GCTAGGCGTTAATTGTGCGTTT 60.414 45.455 0.00 0.00 0.00 3.60
2050 2109 2.785713 AGGCGTTAATTGTGCGTTTT 57.214 40.000 0.00 0.00 0.00 2.43
2051 2110 2.389998 AGGCGTTAATTGTGCGTTTTG 58.610 42.857 0.00 0.00 0.00 2.44
2052 2111 1.136748 GGCGTTAATTGTGCGTTTTGC 60.137 47.619 0.00 0.00 46.70 3.68
2053 2112 1.136748 GCGTTAATTGTGCGTTTTGCC 60.137 47.619 0.00 0.00 45.60 4.52
2054 2113 2.120232 CGTTAATTGTGCGTTTTGCCA 58.880 42.857 0.00 0.00 45.60 4.92
2055 2114 2.097637 CGTTAATTGTGCGTTTTGCCAC 60.098 45.455 0.00 0.00 45.60 5.01
2056 2115 2.141535 TAATTGTGCGTTTTGCCACC 57.858 45.000 0.00 0.00 45.60 4.61
2057 2116 0.873743 AATTGTGCGTTTTGCCACCG 60.874 50.000 0.00 0.00 45.60 4.94
2058 2117 4.560856 TGTGCGTTTTGCCACCGC 62.561 61.111 0.00 0.00 45.60 5.68
2061 2120 4.279043 GCGTTTTGCCACCGCCTT 62.279 61.111 0.00 0.00 41.50 4.35
2062 2121 2.354539 CGTTTTGCCACCGCCTTG 60.355 61.111 0.00 0.00 0.00 3.61
2063 2122 2.661537 GTTTTGCCACCGCCTTGC 60.662 61.111 0.00 0.00 0.00 4.01
2075 2134 1.502190 GCCTTGCGCTTTACTGACC 59.498 57.895 9.73 0.00 0.00 4.02
2076 2135 1.234615 GCCTTGCGCTTTACTGACCA 61.235 55.000 9.73 0.00 0.00 4.02
2077 2136 1.234821 CCTTGCGCTTTACTGACCAA 58.765 50.000 9.73 0.00 0.00 3.67
2078 2137 1.606668 CCTTGCGCTTTACTGACCAAA 59.393 47.619 9.73 0.00 0.00 3.28
2079 2138 2.350772 CCTTGCGCTTTACTGACCAAAG 60.351 50.000 9.73 0.00 36.32 2.77
2082 2141 3.384702 GCTTTACTGACCAAAGCGC 57.615 52.632 0.00 0.00 45.88 5.92
2083 2142 0.591170 GCTTTACTGACCAAAGCGCA 59.409 50.000 11.47 0.00 45.88 6.09
2084 2143 1.200020 GCTTTACTGACCAAAGCGCAT 59.800 47.619 11.47 0.00 45.88 4.73
2085 2144 2.855180 CTTTACTGACCAAAGCGCATG 58.145 47.619 11.47 8.38 0.00 4.06
2086 2145 0.521291 TTACTGACCAAAGCGCATGC 59.479 50.000 11.47 7.91 43.24 4.06
2100 2159 2.693797 GCATGCTTATGCGCAGTTAT 57.306 45.000 18.32 0.10 44.10 1.89
2101 2160 2.313234 GCATGCTTATGCGCAGTTATG 58.687 47.619 18.32 15.92 44.10 1.90
2115 2174 4.864916 CAGTTATGCACAGATTAAGCGT 57.135 40.909 0.00 0.00 0.00 5.07
2116 2175 5.966636 CAGTTATGCACAGATTAAGCGTA 57.033 39.130 0.00 0.00 0.00 4.42
2117 2176 5.967469 CAGTTATGCACAGATTAAGCGTAG 58.033 41.667 0.00 0.00 32.03 3.51
2118 2177 5.520288 CAGTTATGCACAGATTAAGCGTAGT 59.480 40.000 0.00 0.00 32.03 2.73
2119 2178 6.036083 CAGTTATGCACAGATTAAGCGTAGTT 59.964 38.462 0.00 0.00 32.03 2.24
2120 2179 7.222031 CAGTTATGCACAGATTAAGCGTAGTTA 59.778 37.037 0.00 0.00 32.03 2.24
2121 2180 7.926555 AGTTATGCACAGATTAAGCGTAGTTAT 59.073 33.333 0.00 0.00 32.03 1.89
2122 2181 5.966636 TGCACAGATTAAGCGTAGTTATG 57.033 39.130 0.00 0.00 0.00 1.90
2123 2182 4.270084 TGCACAGATTAAGCGTAGTTATGC 59.730 41.667 0.00 0.00 38.47 3.14
2124 2183 4.606232 GCACAGATTAAGCGTAGTTATGCG 60.606 45.833 0.00 0.00 42.84 4.73
2133 2192 3.383546 CGTAGTTATGCGCAATGTGTT 57.616 42.857 17.11 0.00 0.00 3.32
2134 2193 3.742786 CGTAGTTATGCGCAATGTGTTT 58.257 40.909 17.11 0.00 0.00 2.83
2135 2194 4.155449 CGTAGTTATGCGCAATGTGTTTT 58.845 39.130 17.11 0.00 0.00 2.43
2136 2195 4.028977 CGTAGTTATGCGCAATGTGTTTTG 59.971 41.667 17.11 0.00 0.00 2.44
2137 2196 2.730928 AGTTATGCGCAATGTGTTTTGC 59.269 40.909 17.11 0.00 46.70 3.68
2143 2202 0.042274 GCAATGTGTTTTGCCAACGC 60.042 50.000 3.10 3.10 44.94 4.84
2144 2203 0.581053 CAATGTGTTTTGCCAACGCC 59.419 50.000 6.90 0.00 0.00 5.68
2145 2204 0.463620 AATGTGTTTTGCCAACGCCT 59.536 45.000 6.90 0.00 0.00 5.52
2146 2205 1.323412 ATGTGTTTTGCCAACGCCTA 58.677 45.000 6.90 0.00 0.00 3.93
2147 2206 0.665835 TGTGTTTTGCCAACGCCTAG 59.334 50.000 6.90 0.00 0.00 3.02
2148 2207 0.948678 GTGTTTTGCCAACGCCTAGA 59.051 50.000 0.00 0.00 0.00 2.43
2149 2208 1.069227 GTGTTTTGCCAACGCCTAGAG 60.069 52.381 0.00 0.00 0.00 2.43
2150 2209 0.109735 GTTTTGCCAACGCCTAGAGC 60.110 55.000 0.00 0.00 38.52 4.09
2151 2210 1.241315 TTTTGCCAACGCCTAGAGCC 61.241 55.000 0.00 0.00 38.78 4.70
2152 2211 2.124507 TTTGCCAACGCCTAGAGCCT 62.125 55.000 0.00 0.00 38.78 4.58
2153 2212 1.261938 TTGCCAACGCCTAGAGCCTA 61.262 55.000 0.00 0.00 38.78 3.93
2154 2213 1.068250 GCCAACGCCTAGAGCCTAG 59.932 63.158 0.00 3.06 38.78 3.02
2155 2214 1.742768 CCAACGCCTAGAGCCTAGG 59.257 63.158 18.85 18.85 38.78 3.02
2160 2219 4.350441 CCTAGAGCCTAGGCGCGC 62.350 72.222 28.76 25.94 45.41 6.86
2161 2220 3.291383 CTAGAGCCTAGGCGCGCT 61.291 66.667 32.29 25.96 45.41 5.92
2162 2221 2.833582 TAGAGCCTAGGCGCGCTT 60.834 61.111 32.29 27.46 45.41 4.68
2163 2222 1.516365 CTAGAGCCTAGGCGCGCTTA 61.516 60.000 32.29 27.04 45.41 3.09
2164 2223 1.105167 TAGAGCCTAGGCGCGCTTAA 61.105 55.000 32.29 15.41 45.41 1.85
2165 2224 2.356818 AGAGCCTAGGCGCGCTTAAG 62.357 60.000 32.29 22.56 45.41 1.85
2166 2225 3.640992 GCCTAGGCGCGCTTAAGC 61.641 66.667 32.29 28.27 37.78 3.09
2291 2350 4.581824 CCCATATGTTACTTTGCTCTGCAT 59.418 41.667 1.24 0.00 38.76 3.96
2664 2725 6.186957 TGCATGATTTAACATTGGTACCTCT 58.813 36.000 14.36 0.00 0.00 3.69
2665 2726 6.095300 TGCATGATTTAACATTGGTACCTCTG 59.905 38.462 14.36 12.60 0.00 3.35
2666 2727 6.318648 GCATGATTTAACATTGGTACCTCTGA 59.681 38.462 14.36 0.00 0.00 3.27
2667 2728 7.013655 GCATGATTTAACATTGGTACCTCTGAT 59.986 37.037 14.36 7.75 0.00 2.90
2668 2729 8.906867 CATGATTTAACATTGGTACCTCTGATT 58.093 33.333 14.36 9.49 0.00 2.57
2669 2730 8.506168 TGATTTAACATTGGTACCTCTGATTC 57.494 34.615 14.36 1.57 0.00 2.52
2806 2868 9.561069 AAACTTCTGACTAACAATGTAATCTGT 57.439 29.630 0.00 0.00 0.00 3.41
2818 2880 7.433680 ACAATGTAATCTGTAGCGACATATGA 58.566 34.615 10.38 0.00 34.24 2.15
3234 3296 0.976641 TGTTCAGGTGCCTTCGAGAT 59.023 50.000 0.00 0.00 0.00 2.75
3284 3346 0.032017 GGAGAGGACTTAGGCCAGGA 60.032 60.000 6.97 0.00 0.00 3.86
3540 3602 3.108376 ACCCCCTTTAGCTTCTAGTCTG 58.892 50.000 0.00 0.00 0.00 3.51
3681 3743 2.304761 TGGAACCACATTCTACCCTGTC 59.695 50.000 0.00 0.00 37.48 3.51
3708 3770 6.306117 GCAAATGCAAATTATTTGTTCTTGCC 59.694 34.615 24.77 15.54 43.80 4.52
3750 3812 4.637977 GCAATGGAGAGGAGGTTTCTTAAG 59.362 45.833 0.00 0.00 0.00 1.85
3762 3824 2.737252 GTTTCTTAAGTGGAGAGCACCG 59.263 50.000 1.63 0.00 0.00 4.94
3816 3878 3.875727 CACCTGCTGATAGGAATGTTCTG 59.124 47.826 5.54 0.00 40.42 3.02
3832 3894 0.179004 TCTGTTTCGTGGCATTGGGT 60.179 50.000 0.00 0.00 0.00 4.51
3848 3910 3.269347 GTTACGGATGGCGCGCAT 61.269 61.111 34.42 23.43 0.00 4.73
3904 3966 3.669251 ATTTAGCCGTAGATCAGCTCC 57.331 47.619 0.00 0.00 38.06 4.70
3980 4049 3.607741 CATCTGCTGAACAACCAGAGAT 58.392 45.455 0.00 0.00 38.82 2.75
4013 4082 3.428999 CGTGGTACCTCGTTCATCTCATT 60.429 47.826 24.64 0.00 0.00 2.57
4023 4092 6.254589 CCTCGTTCATCTCATTCAGACTTAAC 59.745 42.308 0.00 0.00 32.26 2.01
4060 4129 5.433526 TCCGGGATAGAATTTTGGTTACTG 58.566 41.667 0.00 0.00 0.00 2.74
4095 4164 8.837389 GTTTATAACAAACAGAACTGAAGGTCT 58.163 33.333 8.87 0.00 0.00 3.85
4131 4200 5.120674 TGTTGCTCGTGTTGAAGAGATATTG 59.879 40.000 0.00 0.00 36.65 1.90
4195 4286 4.996758 GTGAAAGGTTAATTTTGGCAGCAT 59.003 37.500 0.00 0.00 0.00 3.79
4245 4336 1.807377 GCAATGCAGCCTGTTGTTTGT 60.807 47.619 0.00 0.00 0.00 2.83
4256 4347 4.380023 GCCTGTTGTTTGTGTGTACTTTGA 60.380 41.667 0.00 0.00 0.00 2.69
4271 4362 6.145209 GTGTACTTTGATCGATGATCCTCATG 59.855 42.308 0.54 0.00 37.20 3.07
4304 4395 7.277981 GTCATGAAGTGTTTATGGTAGTACAGG 59.722 40.741 0.00 0.00 0.00 4.00
4356 4447 9.185192 GATAGCTTTGTTAATCCATTGTATTGC 57.815 33.333 0.00 0.00 0.00 3.56
4368 4466 4.400251 CCATTGTATTGCAGTTGATCACCT 59.600 41.667 0.00 0.00 0.00 4.00
4455 4629 1.104577 GGTGTTGTTTTCTCGGGGCA 61.105 55.000 0.00 0.00 0.00 5.36
4460 4634 1.816074 TGTTTTCTCGGGGCATGTAC 58.184 50.000 0.00 0.00 0.00 2.90
4473 4647 1.880646 GCATGTACCGTGTTCCCAGTT 60.881 52.381 0.00 0.00 0.00 3.16
4474 4648 2.613474 GCATGTACCGTGTTCCCAGTTA 60.613 50.000 0.00 0.00 0.00 2.24
4475 4649 2.818130 TGTACCGTGTTCCCAGTTAC 57.182 50.000 0.00 0.00 0.00 2.50
4476 4650 2.318908 TGTACCGTGTTCCCAGTTACT 58.681 47.619 0.00 0.00 0.00 2.24
4477 4651 2.297033 TGTACCGTGTTCCCAGTTACTC 59.703 50.000 0.00 0.00 0.00 2.59
4478 4652 0.683412 ACCGTGTTCCCAGTTACTCC 59.317 55.000 0.00 0.00 0.00 3.85
4479 4653 0.036671 CCGTGTTCCCAGTTACTCCC 60.037 60.000 0.00 0.00 0.00 4.30
4480 4654 0.974383 CGTGTTCCCAGTTACTCCCT 59.026 55.000 0.00 0.00 0.00 4.20
4481 4655 1.067071 CGTGTTCCCAGTTACTCCCTC 60.067 57.143 0.00 0.00 0.00 4.30
4482 4656 1.278413 GTGTTCCCAGTTACTCCCTCC 59.722 57.143 0.00 0.00 0.00 4.30
4483 4657 0.535797 GTTCCCAGTTACTCCCTCCG 59.464 60.000 0.00 0.00 0.00 4.63
4484 4658 0.115745 TTCCCAGTTACTCCCTCCGT 59.884 55.000 0.00 0.00 0.00 4.69
4485 4659 0.115745 TCCCAGTTACTCCCTCCGTT 59.884 55.000 0.00 0.00 0.00 4.44
4486 4660 0.535797 CCCAGTTACTCCCTCCGTTC 59.464 60.000 0.00 0.00 0.00 3.95
4487 4661 0.535797 CCAGTTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
4488 4662 1.263356 CAGTTACTCCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
4489 4663 1.621814 CAGTTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
4490 4664 2.038033 CAGTTACTCCCTCCGTTCCAAA 59.962 50.000 0.00 0.00 0.00 3.28
4491 4665 2.707257 AGTTACTCCCTCCGTTCCAAAA 59.293 45.455 0.00 0.00 0.00 2.44
4492 4666 3.329814 AGTTACTCCCTCCGTTCCAAAAT 59.670 43.478 0.00 0.00 0.00 1.82
4493 4667 4.533311 AGTTACTCCCTCCGTTCCAAAATA 59.467 41.667 0.00 0.00 0.00 1.40
4494 4668 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4495 4669 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4496 4670 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4497 4671 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4498 4672 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4499 4673 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4500 4674 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
4501 4675 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
4502 4676 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4503 4677 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
4504 4678 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4505 4679 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4506 4680 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
4507 4681 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
4508 4682 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
4544 4718 8.122472 AGTAAAAGTTGGGTCATCTATTTTGG 57.878 34.615 0.00 0.00 0.00 3.28
4545 4719 7.947890 AGTAAAAGTTGGGTCATCTATTTTGGA 59.052 33.333 0.00 0.00 0.00 3.53
4546 4720 7.610580 AAAAGTTGGGTCATCTATTTTGGAA 57.389 32.000 0.00 0.00 0.00 3.53
4547 4721 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
4548 4722 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
4549 4723 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
4550 4724 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
4551 4725 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
4552 4726 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
4553 4727 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4554 4728 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4555 4729 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4556 4730 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4599 4773 0.751452 TGTATATGCGCCGTTACCCA 59.249 50.000 4.18 0.00 0.00 4.51
4604 4778 2.357760 GCGCCGTTACCCACTTGA 60.358 61.111 0.00 0.00 0.00 3.02
4608 4782 1.530323 GCCGTTACCCACTTGATTGT 58.470 50.000 0.00 0.00 0.00 2.71
4623 4797 7.432252 CCACTTGATTGTTGTCTCAAAACTTAC 59.568 37.037 0.00 0.00 31.40 2.34
4648 4822 4.993584 CAGTTCAGAGCTTCTGTATGTGTT 59.006 41.667 11.37 0.00 44.58 3.32
4649 4823 4.993584 AGTTCAGAGCTTCTGTATGTGTTG 59.006 41.667 11.37 0.00 44.58 3.33
4668 4842 9.825972 ATGTGTTGAGTAGTTTAAATTTCATCG 57.174 29.630 0.00 0.00 0.00 3.84
4670 4844 9.659830 GTGTTGAGTAGTTTAAATTTCATCGTT 57.340 29.630 0.00 0.00 0.00 3.85
4709 4883 5.691896 AGCATTGAATGAAGATCAGGATCA 58.308 37.500 9.76 0.00 40.22 2.92
4717 4891 3.949754 TGAAGATCAGGATCATGTTTGGC 59.050 43.478 7.33 0.00 40.22 4.52
4731 4905 6.294473 TCATGTTTGGCAAATTTACCACATT 58.706 32.000 16.74 0.00 35.10 2.71
4736 4910 9.429359 TGTTTGGCAAATTTACCACATTAATAG 57.571 29.630 16.74 0.00 35.10 1.73
4744 4918 9.474313 AAATTTACCACATTAATAGGCTCAGAA 57.526 29.630 0.00 0.00 0.00 3.02
4766 4940 1.266178 GCCCCAAAACTAAGCCATGT 58.734 50.000 0.00 0.00 0.00 3.21
4798 4973 3.119495 CCTAAGAAAAAGGAACCATGGCG 60.119 47.826 13.04 0.00 36.08 5.69
4838 5013 7.728847 ATTTTTACAGGAATTGTTGGAAAGC 57.271 32.000 0.00 0.00 41.29 3.51
4858 5033 4.506758 AGCAAGCTTTTGACAATGTGTTT 58.493 34.783 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 5.791666 TCTTTCAAATTTGTATGGCATGCA 58.208 33.333 21.36 14.53 0.00 3.96
66 67 1.066908 CCCAATGTGCACAAAGTTCGT 59.933 47.619 25.72 1.57 0.00 3.85
96 97 2.940514 TCCAGTTCCTACATCTCCCA 57.059 50.000 0.00 0.00 0.00 4.37
100 101 5.533154 CGACTAGATTCCAGTTCCTACATCT 59.467 44.000 0.00 0.00 0.00 2.90
101 102 5.299782 ACGACTAGATTCCAGTTCCTACATC 59.700 44.000 0.00 0.00 0.00 3.06
102 103 5.202004 ACGACTAGATTCCAGTTCCTACAT 58.798 41.667 0.00 0.00 0.00 2.29
103 104 4.597004 ACGACTAGATTCCAGTTCCTACA 58.403 43.478 0.00 0.00 0.00 2.74
104 105 5.579564 AACGACTAGATTCCAGTTCCTAC 57.420 43.478 0.00 0.00 0.00 3.18
105 106 6.395629 CAAAACGACTAGATTCCAGTTCCTA 58.604 40.000 0.00 0.00 0.00 2.94
106 107 5.238583 CAAAACGACTAGATTCCAGTTCCT 58.761 41.667 0.00 0.00 0.00 3.36
218 220 1.502231 CATGCCGAAATCGAGGTAGG 58.498 55.000 4.04 0.00 43.02 3.18
226 228 1.149361 TACGCGTCCATGCCGAAATC 61.149 55.000 18.63 0.00 0.00 2.17
238 240 2.597305 CCTTGTACAACATCTACGCGTC 59.403 50.000 18.63 0.00 0.00 5.19
325 355 7.735321 AGGGAAGCTAGTATTATGGATAGTTGT 59.265 37.037 0.00 0.00 0.00 3.32
334 364 4.530161 AGCTCCAGGGAAGCTAGTATTATG 59.470 45.833 0.53 0.00 37.11 1.90
335 365 4.530161 CAGCTCCAGGGAAGCTAGTATTAT 59.470 45.833 2.29 0.00 37.11 1.28
336 366 3.898123 CAGCTCCAGGGAAGCTAGTATTA 59.102 47.826 2.29 0.00 37.11 0.98
337 367 2.703007 CAGCTCCAGGGAAGCTAGTATT 59.297 50.000 2.29 0.00 37.11 1.89
339 369 1.007238 ACAGCTCCAGGGAAGCTAGTA 59.993 52.381 2.29 0.00 37.11 1.82
352 391 2.431683 TGGTGGAAGCACAGCTCC 59.568 61.111 6.78 0.00 40.88 4.70
382 421 4.096003 CCGTCGGGTTGCTGGGAT 62.096 66.667 2.34 0.00 0.00 3.85
405 444 3.432051 GAGTCGCGGCAGCCTACAT 62.432 63.158 15.58 0.00 41.18 2.29
425 464 3.490399 CGTTTCGAGTAGTGGTTCTCTC 58.510 50.000 0.00 0.00 0.00 3.20
454 493 2.178912 TTCTCGTTTTTCCAGCGGAT 57.821 45.000 0.00 0.00 0.00 4.18
486 525 2.588856 GAATCTTAGGCGCCGGTGGT 62.589 60.000 23.20 8.28 0.00 4.16
515 554 2.815647 GCTCGCTGCAGGTACACC 60.816 66.667 17.12 0.00 42.31 4.16
753 793 1.337821 GCGACTTGAGTACTTGACCG 58.662 55.000 0.00 0.00 0.00 4.79
796 836 4.637771 GACTCGGGTCCCAATTGG 57.362 61.111 18.21 18.21 36.53 3.16
868 908 2.282816 CCATGGAACCACGGGCAA 60.283 61.111 5.56 0.00 0.00 4.52
947 992 2.056223 CGCGGAGGTTTAGGGGAGA 61.056 63.158 0.00 0.00 0.00 3.71
974 1027 2.224159 GGCTGGAGGTGGAAGTGGA 61.224 63.158 0.00 0.00 0.00 4.02
977 1030 3.322466 CGGGCTGGAGGTGGAAGT 61.322 66.667 0.00 0.00 0.00 3.01
978 1031 4.785453 GCGGGCTGGAGGTGGAAG 62.785 72.222 0.00 0.00 0.00 3.46
1145 1198 2.692741 GAGGGTGGGAAGGGGGAG 60.693 72.222 0.00 0.00 0.00 4.30
1146 1199 3.547737 TGAGGGTGGGAAGGGGGA 61.548 66.667 0.00 0.00 0.00 4.81
1147 1200 2.865183 ATCTGAGGGTGGGAAGGGGG 62.865 65.000 0.00 0.00 0.00 5.40
1148 1201 0.921256 AATCTGAGGGTGGGAAGGGG 60.921 60.000 0.00 0.00 0.00 4.79
1149 1202 0.548510 GAATCTGAGGGTGGGAAGGG 59.451 60.000 0.00 0.00 0.00 3.95
1150 1203 1.488393 GAGAATCTGAGGGTGGGAAGG 59.512 57.143 0.00 0.00 0.00 3.46
1151 1204 1.488393 GGAGAATCTGAGGGTGGGAAG 59.512 57.143 0.00 0.00 33.73 3.46
1152 1205 1.584724 GGAGAATCTGAGGGTGGGAA 58.415 55.000 0.00 0.00 33.73 3.97
1153 1206 0.326618 GGGAGAATCTGAGGGTGGGA 60.327 60.000 0.00 0.00 33.73 4.37
1154 1207 0.621571 TGGGAGAATCTGAGGGTGGG 60.622 60.000 0.00 0.00 33.73 4.61
1155 1208 1.516110 ATGGGAGAATCTGAGGGTGG 58.484 55.000 0.00 0.00 33.73 4.61
1156 1209 3.285484 CAAATGGGAGAATCTGAGGGTG 58.715 50.000 0.00 0.00 33.73 4.61
1157 1210 2.357569 GCAAATGGGAGAATCTGAGGGT 60.358 50.000 0.00 0.00 33.73 4.34
1179 1232 0.796491 GACGAGAGAAGAGCAGCACG 60.796 60.000 0.00 0.00 0.00 5.34
1298 1351 1.227823 CGACCAAACACCTGCAGGA 60.228 57.895 39.19 0.00 38.94 3.86
1315 1368 0.740868 TAGTAGCAAGCAGGCAAGCG 60.741 55.000 2.37 0.00 40.15 4.68
1371 1424 2.029020 AGCACTCTATTCGCAGTTCACA 60.029 45.455 0.00 0.00 0.00 3.58
1376 1429 5.665459 AGATTTAAGCACTCTATTCGCAGT 58.335 37.500 0.00 0.00 0.00 4.40
1380 1433 7.593273 AGATCGAAGATTTAAGCACTCTATTCG 59.407 37.037 0.00 0.00 45.12 3.34
1383 1436 6.644592 GCAGATCGAAGATTTAAGCACTCTAT 59.355 38.462 0.00 0.00 45.12 1.98
1385 1438 4.808364 GCAGATCGAAGATTTAAGCACTCT 59.192 41.667 0.00 0.00 45.12 3.24
1386 1439 4.317698 CGCAGATCGAAGATTTAAGCACTC 60.318 45.833 0.00 0.00 45.12 3.51
1391 1444 4.330074 ACCAACGCAGATCGAAGATTTAAG 59.670 41.667 0.00 0.00 45.12 1.85
1406 1460 1.246737 TTATGCATGGCACCAACGCA 61.247 50.000 16.64 16.64 43.04 5.24
1407 1461 0.102844 ATTATGCATGGCACCAACGC 59.897 50.000 10.16 7.35 43.04 4.84
1409 1463 2.428171 AGTCATTATGCATGGCACCAAC 59.572 45.455 10.16 0.00 43.04 3.77
1413 1467 3.251729 CCACTAGTCATTATGCATGGCAC 59.748 47.826 10.16 0.57 43.04 5.01
1449 1507 3.734597 GCAACTCAACAAGCAACATCACA 60.735 43.478 0.00 0.00 0.00 3.58
1553 1611 7.669304 TGCAGATTTATTATATTTGCCAGGCTA 59.331 33.333 14.15 0.94 33.51 3.93
1874 1933 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1875 1934 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
1876 1935 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
1877 1936 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
1878 1937 2.448219 GACGAGTAATTCCGAACGGAG 58.552 52.381 15.34 5.60 46.06 4.63
1879 1938 1.133025 GGACGAGTAATTCCGAACGGA 59.867 52.381 12.04 12.04 43.52 4.69
1880 1939 1.135315 TGGACGAGTAATTCCGAACGG 60.135 52.381 6.94 6.94 0.00 4.44
1881 1940 2.267188 TGGACGAGTAATTCCGAACG 57.733 50.000 0.00 0.00 0.00 3.95
1882 1941 4.996062 TTTTGGACGAGTAATTCCGAAC 57.004 40.909 0.00 0.00 0.00 3.95
1917 1976 9.277783 GGATGTATCTACAACTAAAATGCATCT 57.722 33.333 0.00 0.00 38.62 2.90
1918 1977 9.056005 TGGATGTATCTACAACTAAAATGCATC 57.944 33.333 0.00 0.00 39.99 3.91
1919 1978 8.978874 TGGATGTATCTACAACTAAAATGCAT 57.021 30.769 0.00 0.00 39.99 3.96
1920 1979 8.978874 ATGGATGTATCTACAACTAAAATGCA 57.021 30.769 0.00 0.00 39.99 3.96
1946 2005 9.672086 CTCCGTTCAAAATTACTTGTCATAAAA 57.328 29.630 0.00 0.00 0.00 1.52
1947 2006 8.293867 CCTCCGTTCAAAATTACTTGTCATAAA 58.706 33.333 0.00 0.00 0.00 1.40
1948 2007 7.094549 CCCTCCGTTCAAAATTACTTGTCATAA 60.095 37.037 0.00 0.00 0.00 1.90
1949 2008 6.373216 CCCTCCGTTCAAAATTACTTGTCATA 59.627 38.462 0.00 0.00 0.00 2.15
1950 2009 5.183140 CCCTCCGTTCAAAATTACTTGTCAT 59.817 40.000 0.00 0.00 0.00 3.06
1951 2010 4.517453 CCCTCCGTTCAAAATTACTTGTCA 59.483 41.667 0.00 0.00 0.00 3.58
1952 2011 4.758165 TCCCTCCGTTCAAAATTACTTGTC 59.242 41.667 0.00 0.00 0.00 3.18
1953 2012 4.721132 TCCCTCCGTTCAAAATTACTTGT 58.279 39.130 0.00 0.00 0.00 3.16
1954 2013 4.760204 ACTCCCTCCGTTCAAAATTACTTG 59.240 41.667 0.00 0.00 0.00 3.16
1955 2014 4.981812 ACTCCCTCCGTTCAAAATTACTT 58.018 39.130 0.00 0.00 0.00 2.24
1956 2015 4.635699 ACTCCCTCCGTTCAAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
1957 2016 6.110707 TCATACTCCCTCCGTTCAAAATTAC 58.889 40.000 0.00 0.00 0.00 1.89
1958 2017 6.302535 TCATACTCCCTCCGTTCAAAATTA 57.697 37.500 0.00 0.00 0.00 1.40
1959 2018 5.174037 TCATACTCCCTCCGTTCAAAATT 57.826 39.130 0.00 0.00 0.00 1.82
1960 2019 4.837093 TCATACTCCCTCCGTTCAAAAT 57.163 40.909 0.00 0.00 0.00 1.82
1961 2020 4.513442 CATCATACTCCCTCCGTTCAAAA 58.487 43.478 0.00 0.00 0.00 2.44
1962 2021 3.118408 CCATCATACTCCCTCCGTTCAAA 60.118 47.826 0.00 0.00 0.00 2.69
1963 2022 2.434336 CCATCATACTCCCTCCGTTCAA 59.566 50.000 0.00 0.00 0.00 2.69
1964 2023 2.039418 CCATCATACTCCCTCCGTTCA 58.961 52.381 0.00 0.00 0.00 3.18
1965 2024 2.040178 ACCATCATACTCCCTCCGTTC 58.960 52.381 0.00 0.00 0.00 3.95
1966 2025 2.176247 ACCATCATACTCCCTCCGTT 57.824 50.000 0.00 0.00 0.00 4.44
1967 2026 3.181422 TGATACCATCATACTCCCTCCGT 60.181 47.826 0.00 0.00 33.59 4.69
1968 2027 3.431415 TGATACCATCATACTCCCTCCG 58.569 50.000 0.00 0.00 33.59 4.63
1969 2028 5.280215 CCTTTGATACCATCATACTCCCTCC 60.280 48.000 0.00 0.00 39.39 4.30
1970 2029 5.280215 CCCTTTGATACCATCATACTCCCTC 60.280 48.000 0.00 0.00 39.39 4.30
1971 2030 4.599241 CCCTTTGATACCATCATACTCCCT 59.401 45.833 0.00 0.00 39.39 4.20
1972 2031 4.263506 CCCCTTTGATACCATCATACTCCC 60.264 50.000 0.00 0.00 39.39 4.30
1973 2032 4.263506 CCCCCTTTGATACCATCATACTCC 60.264 50.000 0.00 0.00 39.39 3.85
1974 2033 4.351111 ACCCCCTTTGATACCATCATACTC 59.649 45.833 0.00 0.00 39.39 2.59
1975 2034 4.315993 ACCCCCTTTGATACCATCATACT 58.684 43.478 0.00 0.00 39.39 2.12
1976 2035 4.104102 TGACCCCCTTTGATACCATCATAC 59.896 45.833 0.00 0.00 39.39 2.39
1977 2036 4.311613 TGACCCCCTTTGATACCATCATA 58.688 43.478 0.00 0.00 39.39 2.15
1978 2037 3.130450 TGACCCCCTTTGATACCATCAT 58.870 45.455 0.00 0.00 39.39 2.45
2028 2087 0.725117 ACGCACAATTAACGCCTAGC 59.275 50.000 0.00 0.00 0.00 3.42
2029 2088 3.465122 AAACGCACAATTAACGCCTAG 57.535 42.857 0.00 0.00 0.00 3.02
2030 2089 3.556513 CAAAACGCACAATTAACGCCTA 58.443 40.909 0.00 0.00 0.00 3.93
2031 2090 2.389998 CAAAACGCACAATTAACGCCT 58.610 42.857 0.00 0.00 0.00 5.52
2032 2091 1.136748 GCAAAACGCACAATTAACGCC 60.137 47.619 0.00 0.00 41.79 5.68
2033 2092 1.136748 GGCAAAACGCACAATTAACGC 60.137 47.619 0.00 0.00 45.17 4.84
2034 2093 2.097637 GTGGCAAAACGCACAATTAACG 60.098 45.455 0.00 0.00 45.17 3.18
2035 2094 2.219903 GGTGGCAAAACGCACAATTAAC 59.780 45.455 0.00 0.00 45.17 2.01
2036 2095 2.474816 GGTGGCAAAACGCACAATTAA 58.525 42.857 0.00 0.00 45.17 1.40
2037 2096 1.600663 CGGTGGCAAAACGCACAATTA 60.601 47.619 0.00 0.00 45.17 1.40
2038 2097 0.873743 CGGTGGCAAAACGCACAATT 60.874 50.000 0.00 0.00 45.17 2.32
2039 2098 1.299773 CGGTGGCAAAACGCACAAT 60.300 52.632 0.00 0.00 45.17 2.71
2040 2099 2.103143 CGGTGGCAAAACGCACAA 59.897 55.556 0.00 0.00 45.17 3.33
2045 2104 2.354539 CAAGGCGGTGGCAAAACG 60.355 61.111 0.00 0.00 42.47 3.60
2046 2105 2.661537 GCAAGGCGGTGGCAAAAC 60.662 61.111 0.00 0.00 42.47 2.43
2057 2116 1.234615 TGGTCAGTAAAGCGCAAGGC 61.235 55.000 11.47 0.00 44.05 4.35
2058 2117 1.234821 TTGGTCAGTAAAGCGCAAGG 58.765 50.000 11.47 0.00 38.28 3.61
2059 2118 2.921126 CTTTGGTCAGTAAAGCGCAAG 58.079 47.619 11.47 0.00 43.44 4.01
2065 2124 2.855180 CATGCGCTTTGGTCAGTAAAG 58.145 47.619 9.73 0.00 38.00 1.85
2066 2125 1.068610 GCATGCGCTTTGGTCAGTAAA 60.069 47.619 9.73 0.00 34.30 2.01
2067 2126 0.521291 GCATGCGCTTTGGTCAGTAA 59.479 50.000 9.73 0.00 34.30 2.24
2068 2127 2.170738 GCATGCGCTTTGGTCAGTA 58.829 52.632 9.73 0.00 34.30 2.74
2069 2128 2.956987 GCATGCGCTTTGGTCAGT 59.043 55.556 9.73 0.00 34.30 3.41
2082 2141 2.313234 GCATAACTGCGCATAAGCATG 58.687 47.619 12.24 11.51 46.97 4.06
2083 2142 2.693797 GCATAACTGCGCATAAGCAT 57.306 45.000 12.24 0.00 46.97 3.79
2094 2153 4.864916 ACGCTTAATCTGTGCATAACTG 57.135 40.909 0.00 0.00 0.00 3.16
2095 2154 5.661458 ACTACGCTTAATCTGTGCATAACT 58.339 37.500 0.00 0.00 0.00 2.24
2096 2155 5.968387 ACTACGCTTAATCTGTGCATAAC 57.032 39.130 0.00 0.00 0.00 1.89
2097 2156 7.307160 GCATAACTACGCTTAATCTGTGCATAA 60.307 37.037 0.00 0.00 0.00 1.90
2098 2157 6.145534 GCATAACTACGCTTAATCTGTGCATA 59.854 38.462 0.00 0.00 0.00 3.14
2099 2158 5.050091 GCATAACTACGCTTAATCTGTGCAT 60.050 40.000 0.00 0.00 0.00 3.96
2100 2159 4.270084 GCATAACTACGCTTAATCTGTGCA 59.730 41.667 0.00 0.00 0.00 4.57
2101 2160 4.606232 CGCATAACTACGCTTAATCTGTGC 60.606 45.833 0.00 0.00 0.00 4.57
2102 2161 4.994734 CGCATAACTACGCTTAATCTGTG 58.005 43.478 0.00 0.00 0.00 3.66
2113 2172 3.383546 AACACATTGCGCATAACTACG 57.616 42.857 12.75 0.00 0.00 3.51
2114 2173 4.201485 GCAAAACACATTGCGCATAACTAC 60.201 41.667 12.75 0.00 45.37 2.73
2115 2174 3.917380 GCAAAACACATTGCGCATAACTA 59.083 39.130 12.75 0.00 45.37 2.24
2116 2175 2.730928 GCAAAACACATTGCGCATAACT 59.269 40.909 12.75 0.00 45.37 2.24
2117 2176 3.088972 GCAAAACACATTGCGCATAAC 57.911 42.857 12.75 0.00 45.37 1.89
2125 2184 0.581053 GGCGTTGGCAAAACACATTG 59.419 50.000 0.00 0.00 42.47 2.82
2126 2185 0.463620 AGGCGTTGGCAAAACACATT 59.536 45.000 0.00 0.00 42.47 2.71
2127 2186 1.269448 CTAGGCGTTGGCAAAACACAT 59.731 47.619 0.00 0.00 42.47 3.21
2128 2187 0.665835 CTAGGCGTTGGCAAAACACA 59.334 50.000 0.00 0.00 42.47 3.72
2129 2188 0.948678 TCTAGGCGTTGGCAAAACAC 59.051 50.000 0.00 0.00 42.47 3.32
2130 2189 1.234821 CTCTAGGCGTTGGCAAAACA 58.765 50.000 0.00 0.00 42.47 2.83
2131 2190 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.000 0.00 0.00 42.47 2.43
2132 2191 1.241315 GGCTCTAGGCGTTGGCAAAA 61.241 55.000 0.00 0.00 42.47 2.44
2133 2192 1.674322 GGCTCTAGGCGTTGGCAAA 60.674 57.895 0.00 0.00 42.47 3.68
2134 2193 1.261938 TAGGCTCTAGGCGTTGGCAA 61.262 55.000 0.00 0.00 46.23 4.52
2135 2194 1.676678 CTAGGCTCTAGGCGTTGGCA 61.677 60.000 0.00 0.00 46.23 4.92
2136 2195 1.068250 CTAGGCTCTAGGCGTTGGC 59.932 63.158 0.00 0.00 46.23 4.52
2137 2196 1.742768 CCTAGGCTCTAGGCGTTGG 59.257 63.158 13.35 10.22 46.23 3.77
2143 2202 4.350441 GCGCGCCTAGGCTCTAGG 62.350 72.222 30.55 16.12 39.32 3.02
2144 2203 1.516365 TAAGCGCGCCTAGGCTCTAG 61.516 60.000 30.55 18.84 38.88 2.43
2145 2204 1.105167 TTAAGCGCGCCTAGGCTCTA 61.105 55.000 30.55 9.53 38.88 2.43
2146 2205 2.356818 CTTAAGCGCGCCTAGGCTCT 62.357 60.000 30.55 20.68 38.88 4.09
2147 2206 1.951631 CTTAAGCGCGCCTAGGCTC 60.952 63.158 30.55 22.76 38.88 4.70
2148 2207 2.107141 CTTAAGCGCGCCTAGGCT 59.893 61.111 30.55 14.71 42.33 4.58
2149 2208 3.640992 GCTTAAGCGCGCCTAGGC 61.641 66.667 30.33 27.28 37.85 3.93
2194 2253 9.026121 ACTCCGCTAGTTATTATTATGAGTCAT 57.974 33.333 11.12 11.12 33.35 3.06
2195 2254 8.405418 ACTCCGCTAGTTATTATTATGAGTCA 57.595 34.615 0.00 0.00 33.35 3.41
2215 2274 3.619038 GCAAAGTAATCCTCTCAACTCCG 59.381 47.826 0.00 0.00 0.00 4.63
2664 2725 6.016860 CCAATCACAACAGTTCTTCAGAATCA 60.017 38.462 0.00 0.00 36.33 2.57
2665 2726 6.205464 TCCAATCACAACAGTTCTTCAGAATC 59.795 38.462 0.00 0.00 36.33 2.52
2666 2727 6.064060 TCCAATCACAACAGTTCTTCAGAAT 58.936 36.000 0.00 0.00 36.33 2.40
2667 2728 5.436175 TCCAATCACAACAGTTCTTCAGAA 58.564 37.500 0.00 0.00 0.00 3.02
2668 2729 5.034852 TCCAATCACAACAGTTCTTCAGA 57.965 39.130 0.00 0.00 0.00 3.27
2669 2730 4.320057 GCTCCAATCACAACAGTTCTTCAG 60.320 45.833 0.00 0.00 0.00 3.02
2752 2813 9.606631 ATGCTTAAACTATTGGAAAACAAACAA 57.393 25.926 0.00 0.00 43.46 2.83
2770 2831 8.445275 TGTTAGTCAGAAGTTTCATGCTTAAA 57.555 30.769 0.00 0.00 0.00 1.52
2806 2868 2.095919 CGTCGACCATCATATGTCGCTA 60.096 50.000 10.58 0.00 38.95 4.26
2818 2880 4.110482 GCAAAGTTCTATACGTCGACCAT 58.890 43.478 10.58 6.26 0.00 3.55
3095 3157 3.257393 CAGACTGACACTGCTATTCCAC 58.743 50.000 0.00 0.00 0.00 4.02
3234 3296 3.371917 CCCCATCCTTCAAGTGCTATCAA 60.372 47.826 0.00 0.00 0.00 2.57
3284 3346 0.038455 AGACACAGTCTCGGGCTACT 59.962 55.000 0.00 0.00 38.71 2.57
3540 3602 2.438075 CCAGAGAAGCCTGCAGCC 60.438 66.667 8.66 0.00 45.47 4.85
3692 3754 9.949174 GAAAAACAATGGCAAGAACAAATAATT 57.051 25.926 0.00 0.00 0.00 1.40
3750 3812 1.450312 CATTCCCGGTGCTCTCCAC 60.450 63.158 0.00 0.00 43.90 4.02
3762 3824 5.070981 TGTCATTCTCTCTATCCACATTCCC 59.929 44.000 0.00 0.00 0.00 3.97
3816 3878 1.400500 CGTAACCCAATGCCACGAAAC 60.400 52.381 0.00 0.00 34.66 2.78
3832 3894 2.512745 AATGCGCGCCATCCGTAA 60.513 55.556 30.77 7.41 39.71 3.18
3848 3910 5.240623 ACAAGTACAAAAGATGCGATTCCAA 59.759 36.000 0.00 0.00 0.00 3.53
3904 3966 1.117994 TCTCTGCCTGCCATCTACAG 58.882 55.000 0.00 0.00 34.82 2.74
4001 4070 6.035435 CCAGTTAAGTCTGAATGAGATGAACG 59.965 42.308 0.00 0.00 37.61 3.95
4013 4082 2.364324 ACGCAACTCCAGTTAAGTCTGA 59.636 45.455 0.00 0.00 37.61 3.27
4040 4109 7.881775 ACATCAGTAACCAAAATTCTATCCC 57.118 36.000 0.00 0.00 0.00 3.85
4095 4164 1.470632 CGAGCAACAAAACCAAAGGCA 60.471 47.619 0.00 0.00 0.00 4.75
4156 4226 0.895530 TCACCGTTCTCCCTAGCAAG 59.104 55.000 0.00 0.00 0.00 4.01
4195 4286 3.056891 CGAAGGCCCTTTTATTTGCTCAA 60.057 43.478 0.00 0.00 0.00 3.02
4245 4336 5.127031 TGAGGATCATCGATCAAAGTACACA 59.873 40.000 2.49 0.00 42.56 3.72
4304 4395 1.025041 GACCGGCCATCTTCCAAATC 58.975 55.000 0.00 0.00 0.00 2.17
4408 4506 2.898729 ACCAGCTACAAGATCCATCG 57.101 50.000 0.00 0.00 0.00 3.84
4439 4537 0.958822 ACATGCCCCGAGAAAACAAC 59.041 50.000 0.00 0.00 0.00 3.32
4455 4629 2.901839 AGTAACTGGGAACACGGTACAT 59.098 45.455 0.00 0.00 35.45 2.29
4460 4634 0.036671 GGGAGTAACTGGGAACACGG 60.037 60.000 0.00 0.00 35.60 4.94
4473 4647 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
4474 4648 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4475 4649 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4476 4650 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4477 4651 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4478 4652 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
4479 4653 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
4480 4654 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
4481 4655 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
4482 4656 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
4518 4692 9.238368 CCAAAATAGATGACCCAACTTTTACTA 57.762 33.333 0.00 0.00 0.00 1.82
4519 4693 7.947890 TCCAAAATAGATGACCCAACTTTTACT 59.052 33.333 0.00 0.00 0.00 2.24
4520 4694 8.117813 TCCAAAATAGATGACCCAACTTTTAC 57.882 34.615 0.00 0.00 0.00 2.01
4521 4695 8.581578 GTTCCAAAATAGATGACCCAACTTTTA 58.418 33.333 0.00 0.00 0.00 1.52
4522 4696 7.441836 GTTCCAAAATAGATGACCCAACTTTT 58.558 34.615 0.00 0.00 0.00 2.27
4523 4697 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
4524 4698 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
4525 4699 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
4526 4700 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
4527 4701 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
4528 4702 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
4529 4703 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
4530 4704 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
4531 4705 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4532 4706 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4533 4707 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4534 4708 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4535 4709 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4536 4710 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4537 4711 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
4538 4712 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
4539 4713 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
4540 4714 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
4541 4715 1.621814 CAACTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
4542 4716 1.203087 TCAACTACTCCCTCCGTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
4543 4717 1.477295 CTCAACTACTCCCTCCGTTCC 59.523 57.143 0.00 0.00 0.00 3.62
4544 4718 2.169330 ACTCAACTACTCCCTCCGTTC 58.831 52.381 0.00 0.00 0.00 3.95
4545 4719 2.305858 ACTCAACTACTCCCTCCGTT 57.694 50.000 0.00 0.00 0.00 4.44
4546 4720 2.575279 TCTACTCAACTACTCCCTCCGT 59.425 50.000 0.00 0.00 0.00 4.69
4547 4721 2.944349 GTCTACTCAACTACTCCCTCCG 59.056 54.545 0.00 0.00 0.00 4.63
4548 4722 4.239428 AGTCTACTCAACTACTCCCTCC 57.761 50.000 0.00 0.00 0.00 4.30
4549 4723 7.012610 GTCATTAGTCTACTCAACTACTCCCTC 59.987 44.444 0.00 0.00 0.00 4.30
4550 4724 6.829811 GTCATTAGTCTACTCAACTACTCCCT 59.170 42.308 0.00 0.00 0.00 4.20
4551 4725 6.602406 TGTCATTAGTCTACTCAACTACTCCC 59.398 42.308 0.00 0.00 0.00 4.30
4552 4726 7.627298 TGTCATTAGTCTACTCAACTACTCC 57.373 40.000 0.00 0.00 0.00 3.85
4553 4727 9.909644 TTTTGTCATTAGTCTACTCAACTACTC 57.090 33.333 0.00 0.00 0.00 2.59
4599 4773 7.968405 GTGTAAGTTTTGAGACAACAATCAAGT 59.032 33.333 0.00 0.00 36.81 3.16
4604 4778 7.391148 ACTGTGTAAGTTTTGAGACAACAAT 57.609 32.000 0.00 0.00 34.57 2.71
4648 4822 8.015087 CAGCAACGATGAAATTTAAACTACTCA 58.985 33.333 0.00 0.00 0.00 3.41
4649 4823 7.007456 GCAGCAACGATGAAATTTAAACTACTC 59.993 37.037 0.00 0.00 0.00 2.59
4665 4839 1.001293 TGAGACAGAAGCAGCAACGAT 59.999 47.619 0.00 0.00 0.00 3.73
4668 4842 1.069364 GCTTGAGACAGAAGCAGCAAC 60.069 52.381 0.00 0.00 44.43 4.17
4670 4844 2.924185 GCTTGAGACAGAAGCAGCA 58.076 52.632 0.00 0.00 44.43 4.41
4699 4873 4.724074 TTTGCCAAACATGATCCTGATC 57.276 40.909 0.00 0.06 38.29 2.92
4703 4877 5.248020 TGGTAAATTTGCCAAACATGATCCT 59.752 36.000 23.79 0.00 40.09 3.24
4707 4881 5.282055 TGTGGTAAATTTGCCAAACATGA 57.718 34.783 26.94 2.51 44.62 3.07
4709 4883 8.860780 ATTAATGTGGTAAATTTGCCAAACAT 57.139 26.923 26.94 22.59 44.62 2.71
4717 4891 8.902806 TCTGAGCCTATTAATGTGGTAAATTTG 58.097 33.333 0.00 0.00 0.00 2.32
4744 4918 0.116143 TGGCTTAGTTTTGGGGCCAT 59.884 50.000 4.39 0.00 46.35 4.40
4766 4940 8.638873 GGTTCCTTTTTCTTAGGATTTTCTGAA 58.361 33.333 0.00 0.00 41.30 3.02
4835 5010 4.127566 ACACATTGTCAAAAGCTTGCTT 57.872 36.364 0.00 1.55 32.14 3.91
4836 5011 3.806625 ACACATTGTCAAAAGCTTGCT 57.193 38.095 0.00 0.00 32.14 3.91
4837 5012 4.260334 GGAAACACATTGTCAAAAGCTTGC 60.260 41.667 0.00 0.00 32.14 4.01
4838 5013 4.869297 TGGAAACACATTGTCAAAAGCTTG 59.131 37.500 0.00 0.00 33.40 4.01
4858 5033 7.453393 ACAGTTAAATCTTCTCTGACAATGGA 58.547 34.615 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.