Multiple sequence alignment - TraesCS2B01G391300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G391300 chr2B 100.000 3152 0 0 1 3152 555854828 555851677 0.000000e+00 5821.0
1 TraesCS2B01G391300 chr2D 90.123 2025 126 31 182 2167 474899062 474897073 0.000000e+00 2564.0
2 TraesCS2B01G391300 chr2D 77.857 560 98 13 2217 2757 6181521 6180969 1.090000e-84 324.0
3 TraesCS2B01G391300 chr2D 78.053 565 89 17 2214 2757 640021249 640021799 1.090000e-84 324.0
4 TraesCS2B01G391300 chr2D 97.436 117 3 0 1 117 474899308 474899192 1.920000e-47 200.0
5 TraesCS2B01G391300 chr2D 92.857 126 9 0 3027 3152 474897073 474896948 1.930000e-42 183.0
6 TraesCS2B01G391300 chr2A 91.892 629 33 8 182 799 617441759 617441138 0.000000e+00 863.0
7 TraesCS2B01G391300 chr2A 95.652 253 11 0 999 1251 617440594 617440342 1.050000e-109 407.0
8 TraesCS2B01G391300 chr2A 94.972 179 5 4 1 175 617442016 617441838 8.610000e-71 278.0
9 TraesCS2B01G391300 chr2A 92.593 81 5 1 796 876 617441117 617441038 7.140000e-22 115.0
10 TraesCS2B01G391300 chr4A 80.605 562 80 11 2215 2752 618590875 618590319 1.050000e-109 407.0
11 TraesCS2B01G391300 chr4A 79.208 606 89 17 2214 2794 665472652 665472059 1.370000e-103 387.0
12 TraesCS2B01G391300 chr4A 79.392 592 83 18 2214 2778 12178260 12178839 6.380000e-102 381.0
13 TraesCS2B01G391300 chr7D 79.436 603 94 9 2214 2792 632120832 632121428 1.760000e-107 399.0
14 TraesCS2B01G391300 chrUn 79.139 604 95 11 2214 2793 8241142 8241738 3.810000e-104 388.0
15 TraesCS2B01G391300 chrUn 79.008 605 94 13 2214 2793 426590774 426591370 1.770000e-102 383.0
16 TraesCS2B01G391300 chrUn 78.843 605 95 13 2214 2793 375362519 375363115 8.250000e-101 377.0
17 TraesCS2B01G391300 chr1A 79.655 580 86 11 2214 2768 572681654 572682226 3.810000e-104 388.0
18 TraesCS2B01G391300 chr1A 83.133 83 14 0 2287 2369 377006518 377006436 3.370000e-10 76.8
19 TraesCS2B01G391300 chr6D 78.913 607 93 15 2214 2793 375805242 375804644 2.290000e-101 379.0
20 TraesCS2B01G391300 chr7B 77.929 589 101 12 2214 2778 567993756 567994339 1.080000e-89 340.0
21 TraesCS2B01G391300 chr4B 78.345 568 91 15 2214 2757 408974923 408974364 3.890000e-89 339.0
22 TraesCS2B01G391300 chr1B 77.834 591 98 16 2214 2778 164838630 164838047 5.040000e-88 335.0
23 TraesCS2B01G391300 chr1B 78.215 381 54 10 2214 2572 611778097 611777724 1.900000e-52 217.0
24 TraesCS2B01G391300 chr3D 76.136 528 90 16 2214 2722 75208293 75207783 8.730000e-61 244.0
25 TraesCS2B01G391300 chr3D 78.292 281 33 10 2214 2470 537282846 537283122 4.210000e-34 156.0
26 TraesCS2B01G391300 chr3B 77.156 429 67 14 2206 2609 172724755 172725177 1.470000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G391300 chr2B 555851677 555854828 3151 True 5821.000000 5821 100.00000 1 3152 1 chr2B.!!$R1 3151
1 TraesCS2B01G391300 chr2D 474896948 474899308 2360 True 982.333333 2564 93.47200 1 3152 3 chr2D.!!$R2 3151
2 TraesCS2B01G391300 chr2D 6180969 6181521 552 True 324.000000 324 77.85700 2217 2757 1 chr2D.!!$R1 540
3 TraesCS2B01G391300 chr2D 640021249 640021799 550 False 324.000000 324 78.05300 2214 2757 1 chr2D.!!$F1 543
4 TraesCS2B01G391300 chr2A 617440342 617442016 1674 True 415.750000 863 93.77725 1 1251 4 chr2A.!!$R1 1250
5 TraesCS2B01G391300 chr4A 618590319 618590875 556 True 407.000000 407 80.60500 2215 2752 1 chr4A.!!$R1 537
6 TraesCS2B01G391300 chr4A 665472059 665472652 593 True 387.000000 387 79.20800 2214 2794 1 chr4A.!!$R2 580
7 TraesCS2B01G391300 chr4A 12178260 12178839 579 False 381.000000 381 79.39200 2214 2778 1 chr4A.!!$F1 564
8 TraesCS2B01G391300 chr7D 632120832 632121428 596 False 399.000000 399 79.43600 2214 2792 1 chr7D.!!$F1 578
9 TraesCS2B01G391300 chrUn 8241142 8241738 596 False 388.000000 388 79.13900 2214 2793 1 chrUn.!!$F1 579
10 TraesCS2B01G391300 chrUn 426590774 426591370 596 False 383.000000 383 79.00800 2214 2793 1 chrUn.!!$F3 579
11 TraesCS2B01G391300 chrUn 375362519 375363115 596 False 377.000000 377 78.84300 2214 2793 1 chrUn.!!$F2 579
12 TraesCS2B01G391300 chr1A 572681654 572682226 572 False 388.000000 388 79.65500 2214 2768 1 chr1A.!!$F1 554
13 TraesCS2B01G391300 chr6D 375804644 375805242 598 True 379.000000 379 78.91300 2214 2793 1 chr6D.!!$R1 579
14 TraesCS2B01G391300 chr7B 567993756 567994339 583 False 340.000000 340 77.92900 2214 2778 1 chr7B.!!$F1 564
15 TraesCS2B01G391300 chr4B 408974364 408974923 559 True 339.000000 339 78.34500 2214 2757 1 chr4B.!!$R1 543
16 TraesCS2B01G391300 chr1B 164838047 164838630 583 True 335.000000 335 77.83400 2214 2778 1 chr1B.!!$R1 564
17 TraesCS2B01G391300 chr3D 75207783 75208293 510 True 244.000000 244 76.13600 2214 2722 1 chr3D.!!$R1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1452 0.033504 CCGTGCGGGCAAGTAGATAT 59.966 55.0 2.15 0.0 0.0 1.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2822 3351 0.03759 AAGCCTTATCAACCGGTGCA 59.962 50.0 8.52 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 141 1.383456 TTCTGCACTGCGTTGCCTTT 61.383 50.000 6.87 0.00 42.25 3.11
140 165 6.427150 TGATTAAGTTGTTTCGAGTTCAAGC 58.573 36.000 0.00 0.00 0.00 4.01
166 191 1.668751 TGTCTGAAAAAGTCACCACGC 59.331 47.619 0.00 0.00 31.13 5.34
170 195 2.354510 CTGAAAAAGTCACCACGCTCAA 59.645 45.455 0.00 0.00 31.13 3.02
172 197 3.380004 TGAAAAAGTCACCACGCTCAAAT 59.620 39.130 0.00 0.00 0.00 2.32
173 198 4.142271 TGAAAAAGTCACCACGCTCAAATT 60.142 37.500 0.00 0.00 0.00 1.82
174 199 3.626028 AAAGTCACCACGCTCAAATTC 57.374 42.857 0.00 0.00 0.00 2.17
175 200 1.148310 AGTCACCACGCTCAAATTCG 58.852 50.000 0.00 0.00 0.00 3.34
176 201 0.865769 GTCACCACGCTCAAATTCGT 59.134 50.000 0.00 0.00 39.79 3.85
180 280 3.263941 ACGCTCAAATTCGTGGCC 58.736 55.556 0.00 0.00 37.55 5.36
193 293 0.451783 CGTGGCCAGAAGCATTTACC 59.548 55.000 5.11 0.00 46.50 2.85
194 294 0.451783 GTGGCCAGAAGCATTTACCG 59.548 55.000 5.11 0.00 46.50 4.02
226 326 1.539827 GTTGCTCGGCTACATTTTGGT 59.460 47.619 5.81 0.00 34.70 3.67
255 355 5.452078 TGAGCCTACCAACAAATTCAAAG 57.548 39.130 0.00 0.00 0.00 2.77
258 358 6.097554 TGAGCCTACCAACAAATTCAAAGAAA 59.902 34.615 0.00 0.00 0.00 2.52
269 369 4.759516 ATTCAAAGAAACGGTTGCGTAT 57.240 36.364 0.00 0.00 0.00 3.06
297 397 1.300931 GGCGAGAGTTGTCTGCACA 60.301 57.895 0.00 0.00 30.97 4.57
298 398 1.560860 GGCGAGAGTTGTCTGCACAC 61.561 60.000 0.00 0.00 30.97 3.82
301 401 0.855349 GAGAGTTGTCTGCACACACG 59.145 55.000 0.00 0.00 30.97 4.49
306 406 1.005347 GTTGTCTGCACACACGTACAC 60.005 52.381 0.00 0.00 29.76 2.90
308 408 0.575390 GTCTGCACACACGTACACAC 59.425 55.000 0.00 0.00 0.00 3.82
338 449 2.282555 CGCCACGTCTCATTTCTATGTG 59.717 50.000 0.00 0.00 33.34 3.21
339 450 3.262420 GCCACGTCTCATTTCTATGTGT 58.738 45.455 0.00 0.00 33.34 3.72
340 451 3.307242 GCCACGTCTCATTTCTATGTGTC 59.693 47.826 0.00 0.00 33.34 3.67
341 452 4.748892 CCACGTCTCATTTCTATGTGTCT 58.251 43.478 0.00 0.00 33.34 3.41
342 453 5.171476 CCACGTCTCATTTCTATGTGTCTT 58.829 41.667 0.00 0.00 33.34 3.01
343 454 5.062683 CCACGTCTCATTTCTATGTGTCTTG 59.937 44.000 0.00 0.00 33.34 3.02
642 753 2.038329 TGGGTCTACTGGGTCGGG 59.962 66.667 0.00 0.00 0.00 5.14
687 798 0.111266 GCGCACTGTACGAGTTTGTG 60.111 55.000 0.30 0.00 29.75 3.33
693 804 2.037251 ACTGTACGAGTTTGTGATGGCT 59.963 45.455 0.00 0.00 0.00 4.75
696 807 2.254546 ACGAGTTTGTGATGGCTGAA 57.745 45.000 0.00 0.00 0.00 3.02
895 1392 1.199097 GTAATGGCACTTCGTGTTGGG 59.801 52.381 0.00 0.00 35.75 4.12
898 1395 1.826487 GGCACTTCGTGTTGGGGTT 60.826 57.895 0.00 0.00 35.75 4.11
901 1398 1.604604 CACTTCGTGTTGGGGTTCAT 58.395 50.000 0.00 0.00 0.00 2.57
916 1413 0.466124 TTCATCACGGTGTGGTGTGA 59.534 50.000 8.17 0.00 44.18 3.58
919 1416 3.898380 TCACGGTGTGGTGTGATAC 57.102 52.632 8.17 0.00 40.02 2.24
947 1445 2.435938 ACATACCGTGCGGGCAAG 60.436 61.111 15.44 0.00 40.62 4.01
948 1446 2.435938 CATACCGTGCGGGCAAGT 60.436 61.111 15.44 4.62 40.62 3.16
951 1449 1.324740 ATACCGTGCGGGCAAGTAGA 61.325 55.000 15.44 0.00 40.62 2.59
952 1450 1.324740 TACCGTGCGGGCAAGTAGAT 61.325 55.000 15.44 0.00 40.62 1.98
953 1451 1.324740 ACCGTGCGGGCAAGTAGATA 61.325 55.000 15.44 0.00 40.62 1.98
954 1452 0.033504 CCGTGCGGGCAAGTAGATAT 59.966 55.000 2.15 0.00 0.00 1.63
979 1477 3.303189 GCCTCAGCTAGCACCTGA 58.697 61.111 18.83 11.16 37.71 3.86
980 1478 1.153469 GCCTCAGCTAGCACCTGAC 60.153 63.158 18.83 0.00 35.60 3.51
981 1479 1.612395 GCCTCAGCTAGCACCTGACT 61.612 60.000 18.83 0.00 35.60 3.41
982 1480 0.459489 CCTCAGCTAGCACCTGACTC 59.541 60.000 18.83 0.00 35.60 3.36
983 1481 0.100325 CTCAGCTAGCACCTGACTCG 59.900 60.000 18.83 0.00 35.60 4.18
984 1482 0.609406 TCAGCTAGCACCTGACTCGT 60.609 55.000 18.83 0.00 34.59 4.18
986 1484 1.678627 CAGCTAGCACCTGACTCGTAT 59.321 52.381 18.83 0.00 32.03 3.06
989 1487 2.359531 GCTAGCACCTGACTCGTATCTT 59.640 50.000 10.63 0.00 0.00 2.40
991 1489 1.478510 AGCACCTGACTCGTATCTTGG 59.521 52.381 0.00 0.00 0.00 3.61
993 1491 1.478510 CACCTGACTCGTATCTTGGCT 59.521 52.381 0.00 0.00 0.00 4.75
994 1492 2.688446 CACCTGACTCGTATCTTGGCTA 59.312 50.000 0.00 0.00 0.00 3.93
995 1493 3.130516 CACCTGACTCGTATCTTGGCTAA 59.869 47.826 0.00 0.00 0.00 3.09
996 1494 3.130693 ACCTGACTCGTATCTTGGCTAAC 59.869 47.826 0.00 0.00 0.00 2.34
1047 1545 4.632458 GGCGACTCGATCCTCCGC 62.632 72.222 1.63 0.00 44.45 5.54
1136 1634 4.070552 GAACAGCCCTCCGTCGCT 62.071 66.667 0.00 0.00 35.10 4.93
1137 1635 3.991536 GAACAGCCCTCCGTCGCTC 62.992 68.421 0.00 0.00 31.40 5.03
1275 1773 1.007964 CGAGTGGCTCGCCTATGAG 60.008 63.158 9.65 0.00 46.75 2.90
1344 1842 1.395045 CCATGGTGCTCTCTCGGCTA 61.395 60.000 2.57 0.00 0.00 3.93
1373 1871 4.699522 GGCCTTGTCGGAGCCGTT 62.700 66.667 8.96 0.00 40.74 4.44
1375 1873 2.809601 CCTTGTCGGAGCCGTTCG 60.810 66.667 8.96 0.00 40.74 3.95
1408 1906 2.594303 TGTGCTCGCCCAACCTTG 60.594 61.111 0.00 0.00 0.00 3.61
1413 1911 1.597027 CTCGCCCAACCTTGTCGTT 60.597 57.895 0.00 0.00 0.00 3.85
1422 1920 2.241880 CCTTGTCGTTGCGGTCGTT 61.242 57.895 0.00 0.00 0.00 3.85
1543 2041 4.711846 TCTTCTATCAAGGCAAGCTCTACA 59.288 41.667 0.00 0.00 0.00 2.74
1551 2049 1.202627 GGCAAGCTCTACATCCTCCAG 60.203 57.143 0.00 0.00 0.00 3.86
1552 2050 1.202627 GCAAGCTCTACATCCTCCAGG 60.203 57.143 0.00 0.00 0.00 4.45
1566 2064 4.436998 CAGGAGACCCGCGACCAC 62.437 72.222 8.23 0.00 37.58 4.16
1596 2094 4.710167 TCCGTCGGCGAGGACAGA 62.710 66.667 28.94 15.75 41.33 3.41
1636 2137 1.002087 CCCGGGTGGATAGACTTATGC 59.998 57.143 14.18 0.00 37.49 3.14
1642 2143 3.244249 GGTGGATAGACTTATGCAGGTCC 60.244 52.174 11.83 2.78 38.15 4.46
1643 2144 2.972713 TGGATAGACTTATGCAGGTCCC 59.027 50.000 11.83 8.15 33.32 4.46
1644 2145 3.243724 GGATAGACTTATGCAGGTCCCT 58.756 50.000 11.83 0.99 33.39 4.20
1645 2146 4.140782 TGGATAGACTTATGCAGGTCCCTA 60.141 45.833 11.83 2.94 33.32 3.53
1646 2147 4.221041 GGATAGACTTATGCAGGTCCCTAC 59.779 50.000 11.83 0.58 33.39 3.18
1647 2148 3.116096 AGACTTATGCAGGTCCCTACA 57.884 47.619 11.83 0.00 33.39 2.74
1648 2149 3.658725 AGACTTATGCAGGTCCCTACAT 58.341 45.455 11.83 4.52 34.68 2.29
1649 2150 3.389329 AGACTTATGCAGGTCCCTACATG 59.611 47.826 8.97 0.00 40.37 3.21
1650 2151 2.439507 ACTTATGCAGGTCCCTACATGG 59.560 50.000 8.97 5.05 37.86 3.66
1660 2161 3.914984 CCTACATGGGGCTACATCG 57.085 57.895 0.00 0.00 0.00 3.84
1696 2197 1.227089 CTCCTGGAATCTGACGGCG 60.227 63.158 4.80 4.80 0.00 6.46
1730 2231 1.537135 GCGCAGAGAGGATCCTAACAC 60.537 57.143 16.16 1.49 33.66 3.32
1732 2233 2.480416 CGCAGAGAGGATCCTAACACAC 60.480 54.545 16.16 0.19 33.66 3.82
1733 2234 2.480416 GCAGAGAGGATCCTAACACACG 60.480 54.545 16.16 0.91 33.66 4.49
1734 2235 3.017442 CAGAGAGGATCCTAACACACGA 58.983 50.000 16.16 0.00 33.66 4.35
1735 2236 3.066064 CAGAGAGGATCCTAACACACGAG 59.934 52.174 16.16 0.00 33.66 4.18
1736 2237 3.054287 AGAGAGGATCCTAACACACGAGA 60.054 47.826 16.16 0.00 33.66 4.04
1737 2238 3.018149 AGAGGATCCTAACACACGAGAC 58.982 50.000 16.16 0.00 33.66 3.36
1740 2241 1.136500 GATCCTAACACACGAGACCCC 59.864 57.143 0.00 0.00 0.00 4.95
1743 2244 2.173519 CCTAACACACGAGACCCCTTA 58.826 52.381 0.00 0.00 0.00 2.69
1745 2246 1.416243 AACACACGAGACCCCTTACA 58.584 50.000 0.00 0.00 0.00 2.41
1755 2256 3.265489 AGACCCCTTACAATTCTTGGGA 58.735 45.455 0.00 0.00 40.23 4.37
1773 2274 3.047877 GACGGTGGAGGGCGTTTG 61.048 66.667 0.00 0.00 0.00 2.93
1861 2362 3.311110 GGTGGACGGAGGTGAGCA 61.311 66.667 0.00 0.00 0.00 4.26
1874 2375 4.070552 GAGCAGCGTCGGGGAAGT 62.071 66.667 0.00 0.00 0.00 3.01
1941 2442 0.389948 CGGACCAGTGCAAGGAGTAC 60.390 60.000 13.05 0.00 0.00 2.73
1980 2481 1.446792 CTTCGTGGACGCTCATGCT 60.447 57.895 0.00 0.00 39.60 3.79
2019 2520 0.458025 CGTGCTACCGGAAGAAGGTC 60.458 60.000 9.46 0.00 42.81 3.85
2028 2529 3.072211 CCGGAAGAAGGTCTGGTTTTAC 58.928 50.000 0.00 0.00 39.00 2.01
2078 2579 2.879646 GGTCTCGAACGTATCTGAGGAT 59.120 50.000 0.00 0.00 32.83 3.24
2129 2630 1.597027 CGTGGCTGTTCCCTCGTTT 60.597 57.895 0.00 0.00 37.17 3.60
2136 2637 2.033194 GTTCCCTCGTTTGGAGCCG 61.033 63.158 0.00 0.00 41.71 5.52
2138 2639 4.016706 CCCTCGTTTGGAGCCGGT 62.017 66.667 1.90 0.00 41.71 5.28
2139 2640 2.742372 CCTCGTTTGGAGCCGGTG 60.742 66.667 1.90 0.00 41.71 4.94
2146 2647 0.109532 TTTGGAGCCGGTGATGAACA 59.890 50.000 1.90 0.00 0.00 3.18
2156 2657 1.208052 GGTGATGAACAGCTAGCCTGA 59.792 52.381 12.13 0.00 44.64 3.86
2157 2658 2.355108 GGTGATGAACAGCTAGCCTGAA 60.355 50.000 12.13 0.00 44.64 3.02
2158 2659 2.675348 GTGATGAACAGCTAGCCTGAAC 59.325 50.000 12.13 9.06 44.64 3.18
2159 2660 1.929836 GATGAACAGCTAGCCTGAACG 59.070 52.381 12.13 0.00 44.64 3.95
2160 2661 0.037326 TGAACAGCTAGCCTGAACGG 60.037 55.000 12.13 0.00 44.64 4.44
2161 2662 0.037232 GAACAGCTAGCCTGAACGGT 60.037 55.000 12.13 0.00 44.64 4.83
2163 2664 1.263356 ACAGCTAGCCTGAACGGTTA 58.737 50.000 12.13 0.00 44.64 2.85
2164 2665 1.831736 ACAGCTAGCCTGAACGGTTAT 59.168 47.619 12.13 0.00 44.64 1.89
2165 2666 2.159085 ACAGCTAGCCTGAACGGTTATC 60.159 50.000 12.13 0.00 44.64 1.75
2166 2667 1.413077 AGCTAGCCTGAACGGTTATCC 59.587 52.381 12.13 0.00 34.25 2.59
2167 2668 1.413077 GCTAGCCTGAACGGTTATCCT 59.587 52.381 2.29 0.00 34.25 3.24
2168 2669 2.626743 GCTAGCCTGAACGGTTATCCTA 59.373 50.000 2.29 0.00 34.25 2.94
2169 2670 3.258622 GCTAGCCTGAACGGTTATCCTAT 59.741 47.826 2.29 0.00 34.25 2.57
2170 2671 3.753294 AGCCTGAACGGTTATCCTATG 57.247 47.619 0.00 0.00 34.25 2.23
2171 2672 2.143925 GCCTGAACGGTTATCCTATGC 58.856 52.381 0.00 0.00 34.25 3.14
2172 2673 2.484770 GCCTGAACGGTTATCCTATGCA 60.485 50.000 0.00 0.00 34.25 3.96
2173 2674 3.804036 CCTGAACGGTTATCCTATGCAA 58.196 45.455 0.00 0.00 0.00 4.08
2174 2675 4.196193 CCTGAACGGTTATCCTATGCAAA 58.804 43.478 0.00 0.00 0.00 3.68
2175 2676 4.638421 CCTGAACGGTTATCCTATGCAAAA 59.362 41.667 0.00 0.00 0.00 2.44
2176 2677 5.124776 CCTGAACGGTTATCCTATGCAAAAA 59.875 40.000 0.00 0.00 0.00 1.94
2247 2748 8.219546 TCTTCAATCATGACAGTACAACAAAA 57.780 30.769 0.00 0.00 34.61 2.44
2300 2810 2.846039 AGTCCACGACTATAAGCACG 57.154 50.000 0.00 0.00 41.51 5.34
2374 2898 1.538950 GTAGACAGTCGGGAAGTCGTT 59.461 52.381 0.00 0.00 37.36 3.85
2377 2901 0.249322 ACAGTCGGGAAGTCGTTGTG 60.249 55.000 0.00 0.00 31.87 3.33
2378 2902 1.300697 AGTCGGGAAGTCGTTGTGC 60.301 57.895 0.00 0.00 0.00 4.57
2379 2903 1.300697 GTCGGGAAGTCGTTGTGCT 60.301 57.895 0.00 0.00 0.00 4.40
2380 2904 0.038892 GTCGGGAAGTCGTTGTGCTA 60.039 55.000 0.00 0.00 0.00 3.49
2382 2906 1.274167 TCGGGAAGTCGTTGTGCTAAT 59.726 47.619 0.00 0.00 0.00 1.73
2395 2919 4.740154 TGTGCTAATTAAGGCCCCATAT 57.260 40.909 0.00 0.00 0.00 1.78
2407 2931 0.461163 CCCCATATGACGAACGCACA 60.461 55.000 3.65 0.00 0.00 4.57
2438 2962 0.456221 CGCCACCGATGAAGAGTAGT 59.544 55.000 0.00 0.00 36.29 2.73
2494 3018 0.520827 GTAGACGAACGACGAGCAGG 60.521 60.000 0.00 0.00 45.77 4.85
2514 3038 2.000447 GTCCGAGCAGATACACCAAAC 59.000 52.381 0.00 0.00 0.00 2.93
2519 3043 2.744202 GAGCAGATACACCAAACACAGG 59.256 50.000 0.00 0.00 0.00 4.00
2522 3046 2.736721 CAGATACACCAAACACAGGTCG 59.263 50.000 0.00 0.00 37.23 4.79
2534 3058 3.729356 CAGGTCGACTGGAGACATG 57.271 57.895 16.46 5.38 43.70 3.21
2575 3099 2.509336 CTAGACGCACCGCCTTGG 60.509 66.667 0.00 0.00 46.41 3.61
2597 3122 1.369321 GGCTAGGCAGGGAGAATCG 59.631 63.158 12.16 0.00 34.37 3.34
2611 3136 5.366768 AGGGAGAATCGTATTCCATCTTCAA 59.633 40.000 4.60 0.00 34.37 2.69
2615 3140 7.902179 GGAGAATCGTATTCCATCTTCAAGGAA 60.902 40.741 0.00 0.00 41.73 3.36
2636 3162 2.278857 CCGCCGTCTCATCTTCCG 60.279 66.667 0.00 0.00 0.00 4.30
2708 3236 2.113139 CCCACCGACAAAGGCTGT 59.887 61.111 0.00 0.00 42.61 4.40
2757 3286 1.153061 ACTGGAGACGAGGTGGACA 59.847 57.895 0.00 0.00 0.00 4.02
2783 3312 1.476007 GGCAGCGGTGGGAGATAGAT 61.476 60.000 17.54 0.00 0.00 1.98
2793 3322 4.846940 GGTGGGAGATAGATGAACCCTAAT 59.153 45.833 0.00 0.00 40.98 1.73
2794 3323 6.023603 GGTGGGAGATAGATGAACCCTAATA 58.976 44.000 0.00 0.00 40.98 0.98
2795 3324 6.500751 GGTGGGAGATAGATGAACCCTAATAA 59.499 42.308 0.00 0.00 40.98 1.40
2796 3325 7.182930 GGTGGGAGATAGATGAACCCTAATAAT 59.817 40.741 0.00 0.00 40.98 1.28
2797 3326 9.268282 GTGGGAGATAGATGAACCCTAATAATA 57.732 37.037 0.00 0.00 40.98 0.98
2798 3327 9.494055 TGGGAGATAGATGAACCCTAATAATAG 57.506 37.037 0.00 0.00 40.98 1.73
2799 3328 9.495382 GGGAGATAGATGAACCCTAATAATAGT 57.505 37.037 0.00 0.00 37.75 2.12
2806 3335 8.386264 AGATGAACCCTAATAATAGTTGGATGG 58.614 37.037 0.00 0.00 0.00 3.51
2807 3336 6.848069 TGAACCCTAATAATAGTTGGATGGG 58.152 40.000 0.00 0.00 38.13 4.00
2808 3337 6.621931 TGAACCCTAATAATAGTTGGATGGGA 59.378 38.462 0.00 0.00 36.20 4.37
2809 3338 7.297108 TGAACCCTAATAATAGTTGGATGGGAT 59.703 37.037 0.00 0.00 36.20 3.85
2810 3339 7.032598 ACCCTAATAATAGTTGGATGGGATG 57.967 40.000 0.00 0.00 36.20 3.51
2811 3340 6.797540 ACCCTAATAATAGTTGGATGGGATGA 59.202 38.462 0.00 0.00 36.20 2.92
2812 3341 7.465563 ACCCTAATAATAGTTGGATGGGATGAT 59.534 37.037 0.00 0.00 36.20 2.45
2813 3342 8.339247 CCCTAATAATAGTTGGATGGGATGATT 58.661 37.037 0.00 0.00 34.34 2.57
2814 3343 9.759473 CCTAATAATAGTTGGATGGGATGATTT 57.241 33.333 0.00 0.00 0.00 2.17
2816 3345 8.426569 AATAATAGTTGGATGGGATGATTTGG 57.573 34.615 0.00 0.00 0.00 3.28
2817 3346 3.036452 AGTTGGATGGGATGATTTGGG 57.964 47.619 0.00 0.00 0.00 4.12
2818 3347 2.315763 AGTTGGATGGGATGATTTGGGT 59.684 45.455 0.00 0.00 0.00 4.51
2819 3348 3.531397 AGTTGGATGGGATGATTTGGGTA 59.469 43.478 0.00 0.00 0.00 3.69
2820 3349 4.170647 AGTTGGATGGGATGATTTGGGTAT 59.829 41.667 0.00 0.00 0.00 2.73
2821 3350 4.116782 TGGATGGGATGATTTGGGTATG 57.883 45.455 0.00 0.00 0.00 2.39
2822 3351 3.466723 TGGATGGGATGATTTGGGTATGT 59.533 43.478 0.00 0.00 0.00 2.29
2823 3352 3.828451 GGATGGGATGATTTGGGTATGTG 59.172 47.826 0.00 0.00 0.00 3.21
2824 3353 2.665165 TGGGATGATTTGGGTATGTGC 58.335 47.619 0.00 0.00 0.00 4.57
2825 3354 2.024560 TGGGATGATTTGGGTATGTGCA 60.025 45.455 0.00 0.00 0.00 4.57
2826 3355 2.362077 GGGATGATTTGGGTATGTGCAC 59.638 50.000 10.75 10.75 0.00 4.57
2827 3356 2.362077 GGATGATTTGGGTATGTGCACC 59.638 50.000 15.69 0.00 37.91 5.01
2828 3357 1.458398 TGATTTGGGTATGTGCACCG 58.542 50.000 15.69 0.00 39.69 4.94
2829 3358 0.738389 GATTTGGGTATGTGCACCGG 59.262 55.000 15.69 0.00 39.69 5.28
2830 3359 0.039035 ATTTGGGTATGTGCACCGGT 59.961 50.000 15.69 0.00 39.69 5.28
2831 3360 0.178987 TTTGGGTATGTGCACCGGTT 60.179 50.000 15.69 0.00 39.69 4.44
2832 3361 0.891449 TTGGGTATGTGCACCGGTTG 60.891 55.000 15.69 1.23 39.69 3.77
2833 3362 1.003112 GGGTATGTGCACCGGTTGA 60.003 57.895 15.69 0.00 39.69 3.18
2834 3363 0.393808 GGGTATGTGCACCGGTTGAT 60.394 55.000 15.69 2.05 39.69 2.57
2835 3364 1.134340 GGGTATGTGCACCGGTTGATA 60.134 52.381 15.69 0.97 39.69 2.15
2836 3365 2.634600 GGTATGTGCACCGGTTGATAA 58.365 47.619 15.69 0.00 0.00 1.75
2837 3366 2.612212 GGTATGTGCACCGGTTGATAAG 59.388 50.000 15.69 0.00 0.00 1.73
2838 3367 1.750193 ATGTGCACCGGTTGATAAGG 58.250 50.000 15.69 0.00 0.00 2.69
2839 3368 0.958382 TGTGCACCGGTTGATAAGGC 60.958 55.000 15.69 3.60 0.00 4.35
2840 3369 0.676782 GTGCACCGGTTGATAAGGCT 60.677 55.000 2.97 0.00 0.00 4.58
2841 3370 0.037590 TGCACCGGTTGATAAGGCTT 59.962 50.000 2.97 4.58 0.00 4.35
2842 3371 1.173913 GCACCGGTTGATAAGGCTTT 58.826 50.000 2.97 0.00 0.00 3.51
2843 3372 1.544246 GCACCGGTTGATAAGGCTTTT 59.456 47.619 2.97 0.00 0.00 2.27
2844 3373 2.029380 GCACCGGTTGATAAGGCTTTTT 60.029 45.455 2.97 0.00 0.00 1.94
2909 3438 4.339872 TTTTCTAACCAGCCGAGTTACA 57.660 40.909 0.00 0.00 0.00 2.41
2910 3439 3.308438 TTCTAACCAGCCGAGTTACAC 57.692 47.619 0.00 0.00 0.00 2.90
2911 3440 2.522185 TCTAACCAGCCGAGTTACACT 58.478 47.619 0.00 0.00 0.00 3.55
2912 3441 2.490903 TCTAACCAGCCGAGTTACACTC 59.509 50.000 0.00 0.00 41.71 3.51
2913 3442 1.045407 AACCAGCCGAGTTACACTCA 58.955 50.000 4.82 0.00 45.30 3.41
2914 3443 1.267121 ACCAGCCGAGTTACACTCAT 58.733 50.000 4.82 0.00 45.30 2.90
2915 3444 1.623811 ACCAGCCGAGTTACACTCATT 59.376 47.619 4.82 0.00 45.30 2.57
2916 3445 2.038557 ACCAGCCGAGTTACACTCATTT 59.961 45.455 4.82 0.00 45.30 2.32
2917 3446 2.673368 CCAGCCGAGTTACACTCATTTC 59.327 50.000 4.82 0.00 45.30 2.17
2918 3447 2.345641 CAGCCGAGTTACACTCATTTCG 59.654 50.000 4.82 0.00 45.30 3.46
2919 3448 1.060698 GCCGAGTTACACTCATTTCGC 59.939 52.381 4.82 0.00 45.30 4.70
2920 3449 1.320555 CCGAGTTACACTCATTTCGCG 59.679 52.381 0.00 0.00 45.30 5.87
2921 3450 2.247637 CGAGTTACACTCATTTCGCGA 58.752 47.619 3.71 3.71 45.30 5.87
2922 3451 2.852413 CGAGTTACACTCATTTCGCGAT 59.148 45.455 10.88 0.00 45.30 4.58
2923 3452 4.033019 CGAGTTACACTCATTTCGCGATA 58.967 43.478 10.88 5.40 45.30 2.92
2924 3453 4.497966 CGAGTTACACTCATTTCGCGATAA 59.502 41.667 10.88 7.96 45.30 1.75
2925 3454 5.004061 CGAGTTACACTCATTTCGCGATAAA 59.996 40.000 10.88 1.65 45.30 1.40
2926 3455 6.453265 CGAGTTACACTCATTTCGCGATAAAA 60.453 38.462 10.88 0.72 45.30 1.52
2927 3456 7.124347 AGTTACACTCATTTCGCGATAAAAA 57.876 32.000 10.88 0.25 0.00 1.94
2955 3484 5.988310 TTCAAGTTCAGATTGAATGGCAT 57.012 34.783 0.00 0.00 40.72 4.40
2956 3485 5.571784 TCAAGTTCAGATTGAATGGCATC 57.428 39.130 0.00 0.00 38.79 3.91
2957 3486 5.011586 TCAAGTTCAGATTGAATGGCATCA 58.988 37.500 0.00 0.00 38.79 3.07
2958 3487 4.978083 AGTTCAGATTGAATGGCATCAC 57.022 40.909 0.00 0.00 38.79 3.06
2959 3488 4.338012 AGTTCAGATTGAATGGCATCACA 58.662 39.130 0.00 1.51 38.79 3.58
2960 3489 4.954202 AGTTCAGATTGAATGGCATCACAT 59.046 37.500 0.00 0.00 38.79 3.21
2961 3490 6.124340 AGTTCAGATTGAATGGCATCACATA 58.876 36.000 0.00 0.00 38.79 2.29
2962 3491 6.776116 AGTTCAGATTGAATGGCATCACATAT 59.224 34.615 0.00 2.06 38.79 1.78
2963 3492 7.287005 AGTTCAGATTGAATGGCATCACATATT 59.713 33.333 0.00 0.00 38.79 1.28
2964 3493 7.210718 TCAGATTGAATGGCATCACATATTC 57.789 36.000 0.00 0.00 0.00 1.75
2965 3494 6.773685 TCAGATTGAATGGCATCACATATTCA 59.226 34.615 0.00 0.00 37.66 2.57
2966 3495 6.861572 CAGATTGAATGGCATCACATATTCAC 59.138 38.462 0.00 0.00 38.75 3.18
2967 3496 6.548251 AGATTGAATGGCATCACATATTCACA 59.452 34.615 0.00 0.00 38.75 3.58
2968 3497 6.718522 TTGAATGGCATCACATATTCACAT 57.281 33.333 0.00 0.00 38.75 3.21
2969 3498 6.321848 TGAATGGCATCACATATTCACATC 57.678 37.500 0.00 0.00 35.34 3.06
2970 3499 6.066032 TGAATGGCATCACATATTCACATCT 58.934 36.000 0.00 0.00 35.34 2.90
2971 3500 7.225725 TGAATGGCATCACATATTCACATCTA 58.774 34.615 0.00 0.00 35.34 1.98
2972 3501 7.173735 TGAATGGCATCACATATTCACATCTAC 59.826 37.037 0.00 0.00 35.34 2.59
2973 3502 5.927819 TGGCATCACATATTCACATCTACA 58.072 37.500 0.00 0.00 0.00 2.74
2974 3503 6.536447 TGGCATCACATATTCACATCTACAT 58.464 36.000 0.00 0.00 0.00 2.29
2975 3504 6.428771 TGGCATCACATATTCACATCTACATG 59.571 38.462 0.00 0.00 35.92 3.21
2976 3505 6.652062 GGCATCACATATTCACATCTACATGA 59.348 38.462 0.00 0.00 33.72 3.07
2977 3506 7.173735 GGCATCACATATTCACATCTACATGAA 59.826 37.037 0.00 0.00 39.09 2.57
2978 3507 8.727910 GCATCACATATTCACATCTACATGAAT 58.272 33.333 0.00 4.97 45.33 2.57
2981 3510 9.933723 TCACATATTCACATCTACATGAATAGG 57.066 33.333 13.95 13.95 45.98 2.57
2982 3511 9.933723 CACATATTCACATCTACATGAATAGGA 57.066 33.333 19.63 0.00 45.66 2.94
2987 3516 8.948631 TTCACATCTACATGAATAGGAGTTTC 57.051 34.615 0.00 0.00 33.72 2.78
2988 3517 7.500992 TCACATCTACATGAATAGGAGTTTCC 58.499 38.462 0.00 0.00 33.43 3.13
2989 3518 6.708054 CACATCTACATGAATAGGAGTTTCCC 59.292 42.308 0.00 0.00 33.59 3.97
2990 3519 6.617371 ACATCTACATGAATAGGAGTTTCCCT 59.383 38.462 0.00 0.00 33.59 4.20
2991 3520 7.127955 ACATCTACATGAATAGGAGTTTCCCTT 59.872 37.037 0.00 0.00 33.59 3.95
2992 3521 7.510675 TCTACATGAATAGGAGTTTCCCTTT 57.489 36.000 0.00 0.00 37.19 3.11
2993 3522 8.618240 TCTACATGAATAGGAGTTTCCCTTTA 57.382 34.615 0.00 0.00 37.19 1.85
2994 3523 8.483758 TCTACATGAATAGGAGTTTCCCTTTAC 58.516 37.037 0.00 0.00 37.19 2.01
2995 3524 7.272144 ACATGAATAGGAGTTTCCCTTTACT 57.728 36.000 0.00 0.00 37.19 2.24
2996 3525 7.699878 ACATGAATAGGAGTTTCCCTTTACTT 58.300 34.615 0.00 0.00 37.19 2.24
2997 3526 8.170730 ACATGAATAGGAGTTTCCCTTTACTTT 58.829 33.333 0.00 0.00 37.19 2.66
2998 3527 9.025041 CATGAATAGGAGTTTCCCTTTACTTTT 57.975 33.333 0.00 0.00 37.19 2.27
2999 3528 8.631480 TGAATAGGAGTTTCCCTTTACTTTTC 57.369 34.615 0.00 0.00 37.19 2.29
3000 3529 7.389607 TGAATAGGAGTTTCCCTTTACTTTTCG 59.610 37.037 0.00 0.00 37.19 3.46
3001 3530 4.395625 AGGAGTTTCCCTTTACTTTTCGG 58.604 43.478 0.00 0.00 37.19 4.30
3002 3531 4.139786 GGAGTTTCCCTTTACTTTTCGGT 58.860 43.478 0.00 0.00 0.00 4.69
3003 3532 5.072193 AGGAGTTTCCCTTTACTTTTCGGTA 59.928 40.000 0.00 0.00 37.19 4.02
3004 3533 5.764686 GGAGTTTCCCTTTACTTTTCGGTAA 59.235 40.000 0.00 0.00 0.00 2.85
3005 3534 6.072838 GGAGTTTCCCTTTACTTTTCGGTAAG 60.073 42.308 0.00 0.00 33.90 2.34
3006 3535 5.766670 AGTTTCCCTTTACTTTTCGGTAAGG 59.233 40.000 0.00 0.00 33.90 2.69
3007 3536 4.290711 TCCCTTTACTTTTCGGTAAGGG 57.709 45.455 11.17 11.17 43.84 3.95
3008 3537 3.652387 TCCCTTTACTTTTCGGTAAGGGT 59.348 43.478 15.68 0.00 43.18 4.34
3009 3538 4.843516 TCCCTTTACTTTTCGGTAAGGGTA 59.156 41.667 15.68 3.18 43.18 3.69
3010 3539 4.937620 CCCTTTACTTTTCGGTAAGGGTAC 59.062 45.833 9.54 0.00 43.18 3.34
3011 3540 5.512921 CCCTTTACTTTTCGGTAAGGGTACA 60.513 44.000 9.54 0.00 43.18 2.90
3012 3541 5.997129 CCTTTACTTTTCGGTAAGGGTACAA 59.003 40.000 0.00 0.00 41.22 2.41
3013 3542 6.486320 CCTTTACTTTTCGGTAAGGGTACAAA 59.514 38.462 0.00 0.00 41.22 2.83
3014 3543 7.013178 CCTTTACTTTTCGGTAAGGGTACAAAA 59.987 37.037 0.00 0.00 41.22 2.44
3015 3544 5.756195 ACTTTTCGGTAAGGGTACAAAAC 57.244 39.130 0.00 0.00 31.21 2.43
3045 3574 1.492176 TCAGATTCATTCCTCTGCCCC 59.508 52.381 0.00 0.00 38.99 5.80
3080 3609 3.141398 CCTCTACAAGCAGAAGCAACAA 58.859 45.455 0.00 0.00 45.49 2.83
3097 3626 3.710209 ACAATGCTCTTCCTTGTAGCT 57.290 42.857 0.00 0.00 37.16 3.32
3104 3633 3.941483 GCTCTTCCTTGTAGCTAATGCAA 59.059 43.478 0.00 0.00 42.74 4.08
3118 3647 4.216257 GCTAATGCAACTCAACTCCTTCAA 59.784 41.667 0.00 0.00 39.41 2.69
3127 3656 5.684704 ACTCAACTCCTTCAAGTCAATCAA 58.315 37.500 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 0.318955 AATCAAAGGCAACGCAGTGC 60.319 50.000 4.58 4.58 45.00 4.40
116 141 6.037720 TGCTTGAACTCGAAACAACTTAATCA 59.962 34.615 0.00 0.00 0.00 2.57
140 165 5.516339 GTGGTGACTTTTTCAGACAAATGTG 59.484 40.000 0.00 0.00 33.71 3.21
166 191 1.135575 GCTTCTGGCCACGAATTTGAG 60.136 52.381 0.00 0.00 34.27 3.02
170 195 1.549203 AATGCTTCTGGCCACGAATT 58.451 45.000 0.00 0.00 40.92 2.17
172 197 1.810151 GTAAATGCTTCTGGCCACGAA 59.190 47.619 0.00 9.42 40.92 3.85
173 198 1.448985 GTAAATGCTTCTGGCCACGA 58.551 50.000 0.00 0.02 40.92 4.35
174 199 0.451783 GGTAAATGCTTCTGGCCACG 59.548 55.000 0.00 0.00 40.92 4.94
175 200 0.451783 CGGTAAATGCTTCTGGCCAC 59.548 55.000 0.00 0.00 40.92 5.01
176 201 0.326595 TCGGTAAATGCTTCTGGCCA 59.673 50.000 4.71 4.71 40.92 5.36
177 202 1.017387 CTCGGTAAATGCTTCTGGCC 58.983 55.000 0.00 0.00 40.92 5.36
180 280 2.032550 CCATGCTCGGTAAATGCTTCTG 59.967 50.000 0.00 0.00 0.00 3.02
193 293 4.465512 GCAACGGTGCCATGCTCG 62.466 66.667 16.48 0.00 45.68 5.03
226 326 3.569194 TGTTGGTAGGCTCAAGAACAA 57.431 42.857 0.00 0.00 0.00 2.83
289 389 0.575390 GTGTGTACGTGTGTGCAGAC 59.425 55.000 7.12 7.12 44.95 3.51
301 401 1.349259 GGCGGACATGACGTGTGTAC 61.349 60.000 4.68 0.00 42.36 2.90
306 406 3.478394 CGTGGCGGACATGACGTG 61.478 66.667 0.00 0.00 38.41 4.49
308 408 3.179265 GACGTGGCGGACATGACG 61.179 66.667 10.68 4.82 39.46 4.35
309 409 1.805945 GAGACGTGGCGGACATGAC 60.806 63.158 10.68 3.37 39.46 3.06
338 449 1.517242 CTGCAGGACAAGACCAAGAC 58.483 55.000 5.57 0.00 0.00 3.01
339 450 0.250467 GCTGCAGGACAAGACCAAGA 60.250 55.000 17.12 0.00 0.00 3.02
340 451 1.572085 CGCTGCAGGACAAGACCAAG 61.572 60.000 17.12 0.00 0.00 3.61
341 452 1.597854 CGCTGCAGGACAAGACCAA 60.598 57.895 17.12 0.00 0.00 3.67
342 453 2.031012 CGCTGCAGGACAAGACCA 59.969 61.111 17.12 0.00 0.00 4.02
343 454 3.426568 GCGCTGCAGGACAAGACC 61.427 66.667 17.12 0.00 0.00 3.85
597 708 4.135153 CAGGTCCAGCCGACGAGG 62.135 72.222 0.00 0.00 42.99 4.63
672 783 2.037251 AGCCATCACAAACTCGTACAGT 59.963 45.455 0.00 0.00 36.64 3.55
687 798 1.026718 CCTCGGGTTGTTCAGCCATC 61.027 60.000 7.88 0.00 44.25 3.51
693 804 2.747686 GGCTCCTCGGGTTGTTCA 59.252 61.111 0.00 0.00 0.00 3.18
895 1392 0.534203 ACACCACACCGTGATGAACC 60.534 55.000 5.28 0.00 37.20 3.62
898 1395 2.128729 TCACACCACACCGTGATGA 58.871 52.632 5.28 0.00 37.23 2.92
901 1398 1.000394 CAGTATCACACCACACCGTGA 60.000 52.381 5.28 0.00 45.62 4.35
916 1413 5.516996 CACGGTATGTCGTTATCACAGTAT 58.483 41.667 0.00 0.00 41.86 2.12
917 1414 4.731483 GCACGGTATGTCGTTATCACAGTA 60.731 45.833 0.00 0.00 41.86 2.74
918 1415 3.766151 CACGGTATGTCGTTATCACAGT 58.234 45.455 0.00 0.00 41.86 3.55
919 1416 2.534349 GCACGGTATGTCGTTATCACAG 59.466 50.000 0.00 0.00 41.86 3.66
947 1445 4.187694 GCTGAGGCTGGCATTATATCTAC 58.812 47.826 3.38 0.00 35.22 2.59
948 1446 4.478206 GCTGAGGCTGGCATTATATCTA 57.522 45.455 3.38 0.00 35.22 1.98
970 1468 2.688446 CCAAGATACGAGTCAGGTGCTA 59.312 50.000 0.00 0.00 0.00 3.49
974 1472 1.853963 AGCCAAGATACGAGTCAGGT 58.146 50.000 0.00 0.00 0.00 4.00
977 1475 2.429610 GGGTTAGCCAAGATACGAGTCA 59.570 50.000 0.00 0.00 36.17 3.41
978 1476 2.429610 TGGGTTAGCCAAGATACGAGTC 59.570 50.000 0.00 0.00 36.17 3.36
979 1477 2.463752 TGGGTTAGCCAAGATACGAGT 58.536 47.619 0.00 0.00 36.17 4.18
980 1478 3.536956 TTGGGTTAGCCAAGATACGAG 57.463 47.619 12.23 0.00 36.17 4.18
981 1479 3.199071 ACATTGGGTTAGCCAAGATACGA 59.801 43.478 20.68 0.00 36.17 3.43
982 1480 3.541632 ACATTGGGTTAGCCAAGATACG 58.458 45.455 20.68 9.27 36.17 3.06
983 1481 4.781934 AGACATTGGGTTAGCCAAGATAC 58.218 43.478 20.68 11.79 36.17 2.24
984 1482 5.192927 CAAGACATTGGGTTAGCCAAGATA 58.807 41.667 20.68 0.00 36.17 1.98
986 1484 3.420893 CAAGACATTGGGTTAGCCAAGA 58.579 45.455 20.68 0.00 36.17 3.02
1137 1635 3.014085 TAAGGCGAGCCACGGGAAG 62.014 63.158 17.18 0.00 42.83 3.46
1204 1702 1.176619 TGGAAGTCAAGACGGAGCGA 61.177 55.000 0.00 0.00 36.20 4.93
1357 1855 3.119096 GAACGGCTCCGACAAGGC 61.119 66.667 15.95 0.00 42.83 4.35
1373 1871 1.901948 ACGACCAGCTTCCTGACGA 60.902 57.895 13.53 0.00 41.77 4.20
1375 1873 0.946221 CACACGACCAGCTTCCTGAC 60.946 60.000 0.00 0.00 41.77 3.51
1408 1906 2.963320 ACCAACGACCGCAACGAC 60.963 61.111 0.00 0.00 34.70 4.34
1413 1911 2.709125 CTTCCTCACCAACGACCGCA 62.709 60.000 0.00 0.00 0.00 5.69
1422 1920 1.741028 TGTGAATCCCTTCCTCACCA 58.259 50.000 0.00 0.00 38.97 4.17
1472 1970 4.489771 GGGCGATCACCACCCAGG 62.490 72.222 1.44 0.00 43.64 4.45
1543 2041 2.444895 GCGGGTCTCCTGGAGGAT 60.445 66.667 23.00 0.00 44.46 3.24
1552 2050 4.131088 GAGGTGGTCGCGGGTCTC 62.131 72.222 6.13 3.23 0.00 3.36
1558 2056 3.827898 GGAGAGGAGGTGGTCGCG 61.828 72.222 0.00 0.00 0.00 5.87
1559 2057 3.827898 CGGAGAGGAGGTGGTCGC 61.828 72.222 0.00 0.00 0.00 5.19
1560 2058 2.361357 ACGGAGAGGAGGTGGTCG 60.361 66.667 0.00 0.00 0.00 4.79
1562 2060 1.000646 GAGACGGAGAGGAGGTGGT 60.001 63.158 0.00 0.00 0.00 4.16
1623 2124 3.243724 AGGGACCTGCATAAGTCTATCC 58.756 50.000 10.43 5.07 33.39 2.59
1626 2127 4.259933 TGTAGGGACCTGCATAAGTCTA 57.740 45.455 4.96 0.00 33.89 2.59
1642 2143 1.273606 CTCGATGTAGCCCCATGTAGG 59.726 57.143 0.00 0.00 37.03 3.18
1643 2144 1.964223 ACTCGATGTAGCCCCATGTAG 59.036 52.381 0.00 0.00 0.00 2.74
1644 2145 1.961394 GACTCGATGTAGCCCCATGTA 59.039 52.381 0.00 0.00 0.00 2.29
1645 2146 0.753262 GACTCGATGTAGCCCCATGT 59.247 55.000 0.00 0.00 0.00 3.21
1646 2147 0.319040 CGACTCGATGTAGCCCCATG 60.319 60.000 0.00 0.00 0.00 3.66
1647 2148 2.041976 CGACTCGATGTAGCCCCAT 58.958 57.895 0.00 0.00 0.00 4.00
1648 2149 2.782222 GCGACTCGATGTAGCCCCA 61.782 63.158 1.63 0.00 40.66 4.96
1649 2150 2.027751 GCGACTCGATGTAGCCCC 59.972 66.667 1.63 0.00 40.66 5.80
1658 2159 3.058783 TATTGCAGCGGCGACTCGA 62.059 57.895 12.98 0.00 45.35 4.04
1660 2161 2.526120 GGTATTGCAGCGGCGACTC 61.526 63.158 12.98 0.00 45.35 3.36
1705 2206 1.445095 GATCCTCTCTGCGCACCAT 59.555 57.895 5.66 0.00 0.00 3.55
1708 2209 0.747255 TTAGGATCCTCTCTGCGCAC 59.253 55.000 20.22 0.00 0.00 5.34
1710 2211 0.747255 TGTTAGGATCCTCTCTGCGC 59.253 55.000 20.22 0.00 0.00 6.09
1730 2231 3.611766 AGAATTGTAAGGGGTCTCGTG 57.388 47.619 0.00 0.00 0.00 4.35
1732 2233 3.270877 CCAAGAATTGTAAGGGGTCTCG 58.729 50.000 0.00 0.00 46.99 4.04
1733 2234 3.265995 TCCCAAGAATTGTAAGGGGTCTC 59.734 47.826 11.69 0.00 46.99 3.36
1734 2235 3.265489 TCCCAAGAATTGTAAGGGGTCT 58.735 45.455 11.69 0.00 46.99 3.85
1735 2236 3.265995 TCTCCCAAGAATTGTAAGGGGTC 59.734 47.826 11.69 0.00 46.99 4.46
1736 2237 3.010250 GTCTCCCAAGAATTGTAAGGGGT 59.990 47.826 11.69 0.00 46.99 4.95
1737 2238 3.621558 GTCTCCCAAGAATTGTAAGGGG 58.378 50.000 11.69 6.83 46.99 4.79
1740 2241 3.684788 CACCGTCTCCCAAGAATTGTAAG 59.315 47.826 0.00 0.00 46.99 2.34
1743 2244 1.271379 CCACCGTCTCCCAAGAATTGT 60.271 52.381 0.00 0.00 46.99 2.71
1745 2246 1.279271 CTCCACCGTCTCCCAAGAATT 59.721 52.381 0.00 0.00 31.93 2.17
1755 2256 3.239253 AAACGCCCTCCACCGTCT 61.239 61.111 0.00 0.00 36.56 4.18
1769 2270 1.081442 GCGCCTACCTTGTGCAAAC 60.081 57.895 0.00 0.00 39.02 2.93
1770 2271 2.612567 CGCGCCTACCTTGTGCAAA 61.613 57.895 0.00 0.00 39.14 3.68
1777 2278 4.778143 CAAGCCCGCGCCTACCTT 62.778 66.667 0.00 0.00 34.57 3.50
1801 2302 1.535462 GAACACCGTGAATTCAGTGGG 59.465 52.381 23.92 19.75 34.50 4.61
1803 2304 1.398451 GCGAACACCGTGAATTCAGTG 60.398 52.381 20.50 20.50 41.15 3.66
1831 2332 4.402528 CCACCGTGATCCCGCCAA 62.403 66.667 0.00 0.00 0.00 4.52
1874 2375 4.351938 CGACGAACAGCACCCGGA 62.352 66.667 0.73 0.00 0.00 5.14
2019 2520 0.517316 GGACGCTGCAGTAAAACCAG 59.483 55.000 16.64 0.00 0.00 4.00
2028 2529 2.433145 ATGTCGTGGACGCTGCAG 60.433 61.111 10.11 10.11 39.60 4.41
2078 2579 2.102109 TTTCAGCGGCCGTACCTTGA 62.102 55.000 28.70 18.74 35.61 3.02
2085 2586 3.785122 AAACCCTTTCAGCGGCCGT 62.785 57.895 28.70 11.01 0.00 5.68
2113 2614 1.228124 CCAAACGAGGGAACAGCCA 60.228 57.895 0.00 0.00 38.95 4.75
2129 2630 1.296392 CTGTTCATCACCGGCTCCA 59.704 57.895 0.00 0.00 0.00 3.86
2136 2637 1.208052 TCAGGCTAGCTGTTCATCACC 59.792 52.381 15.72 0.00 0.00 4.02
2138 2639 2.675032 CGTTCAGGCTAGCTGTTCATCA 60.675 50.000 15.72 0.00 0.00 3.07
2139 2640 1.929836 CGTTCAGGCTAGCTGTTCATC 59.070 52.381 15.72 0.00 0.00 2.92
2146 2647 1.413077 GGATAACCGTTCAGGCTAGCT 59.587 52.381 15.72 0.00 46.52 3.32
2283 2785 3.766151 CTTTCGTGCTTATAGTCGTGGA 58.234 45.455 0.00 0.00 0.00 4.02
2374 2898 4.105537 TCATATGGGGCCTTAATTAGCACA 59.894 41.667 0.84 0.11 32.61 4.57
2377 2901 3.689649 CGTCATATGGGGCCTTAATTAGC 59.310 47.826 0.84 0.00 0.00 3.09
2378 2902 5.160607 TCGTCATATGGGGCCTTAATTAG 57.839 43.478 0.84 0.00 0.00 1.73
2379 2903 5.310451 GTTCGTCATATGGGGCCTTAATTA 58.690 41.667 0.84 0.00 0.00 1.40
2380 2904 4.142038 GTTCGTCATATGGGGCCTTAATT 58.858 43.478 0.84 0.00 0.00 1.40
2382 2906 2.484065 CGTTCGTCATATGGGGCCTTAA 60.484 50.000 0.84 0.00 0.00 1.85
2395 2919 1.061421 GTTGTTCTTGTGCGTTCGTCA 59.939 47.619 0.00 0.00 0.00 4.35
2407 2931 1.720694 CGGTGGCGGTTGTTGTTCTT 61.721 55.000 0.00 0.00 0.00 2.52
2438 2962 7.505923 TCTCAAGTTGGATCCTTTCGATCTATA 59.494 37.037 14.23 0.00 45.90 1.31
2490 3014 0.528684 GTGTATCTGCTCGGACCTGC 60.529 60.000 0.00 0.00 0.00 4.85
2494 3018 2.000447 GTTTGGTGTATCTGCTCGGAC 59.000 52.381 0.00 0.00 0.00 4.79
2514 3038 0.891373 ATGTCTCCAGTCGACCTGTG 59.109 55.000 13.01 3.93 39.74 3.66
2519 3043 0.179124 GAGGCATGTCTCCAGTCGAC 60.179 60.000 16.81 7.70 0.00 4.20
2534 3058 2.358737 CGGTGGAAGTGTGGAGGC 60.359 66.667 0.00 0.00 0.00 4.70
2544 3068 1.112113 GTCTAGCATCTCCGGTGGAA 58.888 55.000 0.00 0.00 0.00 3.53
2597 3122 3.312697 GCGGTTCCTTGAAGATGGAATAC 59.687 47.826 0.00 0.00 43.25 1.89
2636 3162 2.552743 GTTAGGGTTTGTGTCTTGCTCC 59.447 50.000 0.00 0.00 0.00 4.70
2783 3312 6.621931 TCCCATCCAACTATTATTAGGGTTCA 59.378 38.462 0.00 0.00 35.31 3.18
2793 3322 6.125919 ACCCAAATCATCCCATCCAACTATTA 60.126 38.462 0.00 0.00 0.00 0.98
2794 3323 5.149976 CCCAAATCATCCCATCCAACTATT 58.850 41.667 0.00 0.00 0.00 1.73
2795 3324 4.170647 ACCCAAATCATCCCATCCAACTAT 59.829 41.667 0.00 0.00 0.00 2.12
2796 3325 3.531397 ACCCAAATCATCCCATCCAACTA 59.469 43.478 0.00 0.00 0.00 2.24
2797 3326 2.315763 ACCCAAATCATCCCATCCAACT 59.684 45.455 0.00 0.00 0.00 3.16
2798 3327 2.750814 ACCCAAATCATCCCATCCAAC 58.249 47.619 0.00 0.00 0.00 3.77
2799 3328 4.078688 ACATACCCAAATCATCCCATCCAA 60.079 41.667 0.00 0.00 0.00 3.53
2800 3329 3.466723 ACATACCCAAATCATCCCATCCA 59.533 43.478 0.00 0.00 0.00 3.41
2801 3330 3.828451 CACATACCCAAATCATCCCATCC 59.172 47.826 0.00 0.00 0.00 3.51
2802 3331 3.256631 GCACATACCCAAATCATCCCATC 59.743 47.826 0.00 0.00 0.00 3.51
2803 3332 3.233507 GCACATACCCAAATCATCCCAT 58.766 45.455 0.00 0.00 0.00 4.00
2804 3333 2.024560 TGCACATACCCAAATCATCCCA 60.025 45.455 0.00 0.00 0.00 4.37
2805 3334 2.362077 GTGCACATACCCAAATCATCCC 59.638 50.000 13.17 0.00 0.00 3.85
2806 3335 2.362077 GGTGCACATACCCAAATCATCC 59.638 50.000 20.43 0.00 34.56 3.51
2807 3336 2.033299 CGGTGCACATACCCAAATCATC 59.967 50.000 20.43 0.00 37.44 2.92
2808 3337 2.023673 CGGTGCACATACCCAAATCAT 58.976 47.619 20.43 0.00 37.44 2.45
2809 3338 1.458398 CGGTGCACATACCCAAATCA 58.542 50.000 20.43 0.00 37.44 2.57
2810 3339 0.738389 CCGGTGCACATACCCAAATC 59.262 55.000 20.43 0.00 37.44 2.17
2811 3340 0.039035 ACCGGTGCACATACCCAAAT 59.961 50.000 20.43 0.00 37.44 2.32
2812 3341 0.178987 AACCGGTGCACATACCCAAA 60.179 50.000 20.43 0.00 37.44 3.28
2813 3342 0.891449 CAACCGGTGCACATACCCAA 60.891 55.000 20.43 0.00 37.44 4.12
2814 3343 1.302913 CAACCGGTGCACATACCCA 60.303 57.895 20.43 0.00 37.44 4.51
2815 3344 0.393808 ATCAACCGGTGCACATACCC 60.394 55.000 20.43 0.00 37.44 3.69
2816 3345 2.319136 TATCAACCGGTGCACATACC 57.681 50.000 20.43 0.00 37.37 2.73
2817 3346 2.612212 CCTTATCAACCGGTGCACATAC 59.388 50.000 20.43 0.00 0.00 2.39
2818 3347 2.912771 CCTTATCAACCGGTGCACATA 58.087 47.619 20.43 3.60 0.00 2.29
2819 3348 1.750193 CCTTATCAACCGGTGCACAT 58.250 50.000 20.43 4.67 0.00 3.21
2820 3349 0.958382 GCCTTATCAACCGGTGCACA 60.958 55.000 20.43 0.00 0.00 4.57
2821 3350 0.676782 AGCCTTATCAACCGGTGCAC 60.677 55.000 8.52 8.80 0.00 4.57
2822 3351 0.037590 AAGCCTTATCAACCGGTGCA 59.962 50.000 8.52 0.00 0.00 4.57
2823 3352 1.173913 AAAGCCTTATCAACCGGTGC 58.826 50.000 8.52 5.02 0.00 5.01
2824 3353 3.934457 AAAAAGCCTTATCAACCGGTG 57.066 42.857 8.52 2.16 0.00 4.94
2887 3416 4.512571 GTGTAACTCGGCTGGTTAGAAAAA 59.487 41.667 6.80 0.00 31.03 1.94
2888 3417 4.060205 GTGTAACTCGGCTGGTTAGAAAA 58.940 43.478 6.80 0.00 31.03 2.29
2889 3418 3.656559 GTGTAACTCGGCTGGTTAGAAA 58.343 45.455 6.80 0.00 31.03 2.52
2890 3419 3.308438 GTGTAACTCGGCTGGTTAGAA 57.692 47.619 6.80 0.00 31.03 2.10
2933 3462 5.477637 TGATGCCATTCAATCTGAACTTGAA 59.522 36.000 8.42 8.42 44.28 2.69
2934 3463 5.011586 TGATGCCATTCAATCTGAACTTGA 58.988 37.500 0.00 0.00 39.45 3.02
2935 3464 5.100259 GTGATGCCATTCAATCTGAACTTG 58.900 41.667 0.00 0.00 39.45 3.16
2936 3465 4.768448 TGTGATGCCATTCAATCTGAACTT 59.232 37.500 0.00 0.00 39.45 2.66
2937 3466 4.338012 TGTGATGCCATTCAATCTGAACT 58.662 39.130 0.00 0.00 39.45 3.01
2938 3467 4.707030 TGTGATGCCATTCAATCTGAAC 57.293 40.909 0.00 0.00 39.45 3.18
2939 3468 7.285858 TGAATATGTGATGCCATTCAATCTGAA 59.714 33.333 0.00 0.00 41.09 3.02
2940 3469 6.773685 TGAATATGTGATGCCATTCAATCTGA 59.226 34.615 0.00 0.00 35.15 3.27
2941 3470 6.861572 GTGAATATGTGATGCCATTCAATCTG 59.138 38.462 0.00 0.00 38.68 2.90
2942 3471 6.548251 TGTGAATATGTGATGCCATTCAATCT 59.452 34.615 0.00 0.00 38.68 2.40
2943 3472 6.741109 TGTGAATATGTGATGCCATTCAATC 58.259 36.000 0.00 0.00 38.68 2.67
2944 3473 6.718522 TGTGAATATGTGATGCCATTCAAT 57.281 33.333 0.00 0.00 38.68 2.57
2945 3474 6.548251 AGATGTGAATATGTGATGCCATTCAA 59.452 34.615 0.00 0.00 38.68 2.69
2946 3475 6.066032 AGATGTGAATATGTGATGCCATTCA 58.934 36.000 0.00 0.00 35.58 2.57
2947 3476 6.570672 AGATGTGAATATGTGATGCCATTC 57.429 37.500 0.00 0.00 0.00 2.67
2948 3477 6.999871 TGTAGATGTGAATATGTGATGCCATT 59.000 34.615 0.00 0.00 0.00 3.16
2949 3478 6.536447 TGTAGATGTGAATATGTGATGCCAT 58.464 36.000 0.00 0.00 0.00 4.40
2950 3479 5.927819 TGTAGATGTGAATATGTGATGCCA 58.072 37.500 0.00 0.00 0.00 4.92
2951 3480 6.652062 TCATGTAGATGTGAATATGTGATGCC 59.348 38.462 0.00 0.00 0.00 4.40
2952 3481 7.662604 TCATGTAGATGTGAATATGTGATGC 57.337 36.000 0.00 0.00 0.00 3.91
2955 3484 9.933723 CCTATTCATGTAGATGTGAATATGTGA 57.066 33.333 7.90 0.00 42.90 3.58
2956 3485 9.933723 TCCTATTCATGTAGATGTGAATATGTG 57.066 33.333 7.90 2.52 42.90 3.21
2961 3490 9.553064 GAAACTCCTATTCATGTAGATGTGAAT 57.447 33.333 0.00 5.97 44.67 2.57
2962 3491 7.987458 GGAAACTCCTATTCATGTAGATGTGAA 59.013 37.037 0.00 0.00 34.80 3.18
2963 3492 7.419057 GGGAAACTCCTATTCATGTAGATGTGA 60.419 40.741 0.00 0.00 36.57 3.58
2964 3493 6.708054 GGGAAACTCCTATTCATGTAGATGTG 59.292 42.308 0.00 0.00 36.57 3.21
2965 3494 6.617371 AGGGAAACTCCTATTCATGTAGATGT 59.383 38.462 0.00 0.00 36.57 3.06
2966 3495 7.072263 AGGGAAACTCCTATTCATGTAGATG 57.928 40.000 0.00 0.00 36.57 2.90
2967 3496 7.698163 AAGGGAAACTCCTATTCATGTAGAT 57.302 36.000 0.00 0.00 36.57 1.98
2968 3497 7.510675 AAAGGGAAACTCCTATTCATGTAGA 57.489 36.000 0.00 0.00 36.57 2.59
2969 3498 8.487028 AGTAAAGGGAAACTCCTATTCATGTAG 58.513 37.037 0.00 0.00 36.57 2.74
2970 3499 8.388656 AGTAAAGGGAAACTCCTATTCATGTA 57.611 34.615 0.00 0.00 36.57 2.29
2971 3500 7.272144 AGTAAAGGGAAACTCCTATTCATGT 57.728 36.000 0.00 0.00 36.57 3.21
2972 3501 8.581253 AAAGTAAAGGGAAACTCCTATTCATG 57.419 34.615 0.00 0.00 36.57 3.07
2973 3502 9.244292 GAAAAGTAAAGGGAAACTCCTATTCAT 57.756 33.333 0.00 0.00 36.57 2.57
2974 3503 7.389607 CGAAAAGTAAAGGGAAACTCCTATTCA 59.610 37.037 0.00 0.00 36.57 2.57
2975 3504 7.148289 CCGAAAAGTAAAGGGAAACTCCTATTC 60.148 40.741 0.00 0.00 36.57 1.75
2976 3505 6.657966 CCGAAAAGTAAAGGGAAACTCCTATT 59.342 38.462 0.00 0.00 36.57 1.73
2977 3506 6.178324 CCGAAAAGTAAAGGGAAACTCCTAT 58.822 40.000 0.00 0.00 36.57 2.57
2978 3507 5.072193 ACCGAAAAGTAAAGGGAAACTCCTA 59.928 40.000 0.00 0.00 36.57 2.94
2979 3508 4.141321 ACCGAAAAGTAAAGGGAAACTCCT 60.141 41.667 0.00 0.00 36.57 3.69
2980 3509 4.139786 ACCGAAAAGTAAAGGGAAACTCC 58.860 43.478 0.00 0.00 35.23 3.85
2981 3510 6.072838 CCTTACCGAAAAGTAAAGGGAAACTC 60.073 42.308 0.00 0.00 32.02 3.01
2982 3511 5.766670 CCTTACCGAAAAGTAAAGGGAAACT 59.233 40.000 0.00 0.00 32.02 2.66
2983 3512 5.048504 CCCTTACCGAAAAGTAAAGGGAAAC 60.049 44.000 12.19 0.00 40.00 2.78
2984 3513 5.072055 CCCTTACCGAAAAGTAAAGGGAAA 58.928 41.667 12.19 0.00 40.00 3.13
2985 3514 4.104579 ACCCTTACCGAAAAGTAAAGGGAA 59.895 41.667 22.06 0.00 40.00 3.97
2986 3515 3.652387 ACCCTTACCGAAAAGTAAAGGGA 59.348 43.478 22.06 0.00 40.00 4.20
2987 3516 4.025040 ACCCTTACCGAAAAGTAAAGGG 57.975 45.455 15.28 15.28 41.54 3.95
2988 3517 5.550290 TGTACCCTTACCGAAAAGTAAAGG 58.450 41.667 0.00 0.00 39.01 3.11
2989 3518 7.495135 TTTGTACCCTTACCGAAAAGTAAAG 57.505 36.000 0.00 0.00 32.02 1.85
2990 3519 7.201776 GGTTTTGTACCCTTACCGAAAAGTAAA 60.202 37.037 0.00 0.00 41.43 2.01
2991 3520 6.262049 GGTTTTGTACCCTTACCGAAAAGTAA 59.738 38.462 0.00 0.00 41.43 2.24
2992 3521 5.762711 GGTTTTGTACCCTTACCGAAAAGTA 59.237 40.000 0.00 0.00 41.43 2.24
2993 3522 4.580167 GGTTTTGTACCCTTACCGAAAAGT 59.420 41.667 0.00 0.00 41.43 2.66
2994 3523 5.112220 GGTTTTGTACCCTTACCGAAAAG 57.888 43.478 0.00 0.00 41.43 2.27
3007 3536 8.134895 TGAATCTGAATTTGAGTGGTTTTGTAC 58.865 33.333 0.00 0.00 0.00 2.90
3008 3537 8.231692 TGAATCTGAATTTGAGTGGTTTTGTA 57.768 30.769 0.00 0.00 0.00 2.41
3009 3538 7.111247 TGAATCTGAATTTGAGTGGTTTTGT 57.889 32.000 0.00 0.00 0.00 2.83
3010 3539 8.597662 AATGAATCTGAATTTGAGTGGTTTTG 57.402 30.769 0.00 0.00 0.00 2.44
3011 3540 7.874528 GGAATGAATCTGAATTTGAGTGGTTTT 59.125 33.333 0.00 0.00 0.00 2.43
3012 3541 7.234166 AGGAATGAATCTGAATTTGAGTGGTTT 59.766 33.333 0.00 0.00 0.00 3.27
3013 3542 6.723052 AGGAATGAATCTGAATTTGAGTGGTT 59.277 34.615 0.00 0.00 0.00 3.67
3014 3543 6.251471 AGGAATGAATCTGAATTTGAGTGGT 58.749 36.000 0.00 0.00 0.00 4.16
3015 3544 6.602406 AGAGGAATGAATCTGAATTTGAGTGG 59.398 38.462 0.00 0.00 0.00 4.00
3016 3545 7.473366 CAGAGGAATGAATCTGAATTTGAGTG 58.527 38.462 0.00 0.00 44.68 3.51
3017 3546 6.095160 GCAGAGGAATGAATCTGAATTTGAGT 59.905 38.462 6.39 0.00 44.68 3.41
3018 3547 6.459848 GGCAGAGGAATGAATCTGAATTTGAG 60.460 42.308 6.39 0.00 44.68 3.02
3019 3548 5.359009 GGCAGAGGAATGAATCTGAATTTGA 59.641 40.000 6.39 0.00 44.68 2.69
3020 3549 5.451520 GGGCAGAGGAATGAATCTGAATTTG 60.452 44.000 6.39 0.00 44.68 2.32
3021 3550 4.648307 GGGCAGAGGAATGAATCTGAATTT 59.352 41.667 6.39 0.00 44.68 1.82
3022 3551 4.213513 GGGCAGAGGAATGAATCTGAATT 58.786 43.478 6.39 0.00 44.68 2.17
3023 3552 3.436180 GGGGCAGAGGAATGAATCTGAAT 60.436 47.826 6.39 0.00 44.68 2.57
3024 3553 2.092212 GGGGCAGAGGAATGAATCTGAA 60.092 50.000 6.39 0.00 44.68 3.02
3025 3554 1.492176 GGGGCAGAGGAATGAATCTGA 59.508 52.381 6.39 0.00 44.68 3.27
3045 3574 5.735922 GCTTGTAGAGGAGAGCAAGTATCTG 60.736 48.000 0.00 0.00 40.09 2.90
3080 3609 4.133078 GCATTAGCTACAAGGAAGAGCAT 58.867 43.478 0.00 0.00 38.73 3.79
3083 3612 5.181748 AGTTGCATTAGCTACAAGGAAGAG 58.818 41.667 0.00 0.00 46.76 2.85
3086 3615 4.905429 TGAGTTGCATTAGCTACAAGGAA 58.095 39.130 0.00 0.00 46.76 3.36
3094 3623 3.710209 AGGAGTTGAGTTGCATTAGCT 57.290 42.857 0.00 0.00 42.74 3.32
3097 3626 5.376625 ACTTGAAGGAGTTGAGTTGCATTA 58.623 37.500 0.00 0.00 0.00 1.90
3104 3633 5.296151 TGATTGACTTGAAGGAGTTGAGT 57.704 39.130 0.00 0.00 0.00 3.41
3118 3647 7.505585 TCAATAAGAAAAGTGGGTTGATTGACT 59.494 33.333 0.00 0.00 0.00 3.41
3127 3656 7.703058 CAGGTTATCAATAAGAAAAGTGGGT 57.297 36.000 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.