Multiple sequence alignment - TraesCS2B01G390600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G390600 chr2B 100.000 7252 0 0 1 7252 554460177 554452926 0.000000e+00 13393.0
1 TraesCS2B01G390600 chr2D 94.254 6056 188 52 585 6534 473720488 473714487 0.000000e+00 9108.0
2 TraesCS2B01G390600 chr2D 90.678 472 24 9 93 562 473721007 473720554 1.730000e-170 610.0
3 TraesCS2B01G390600 chr2D 81.234 389 51 14 6691 7067 473714419 473714041 1.980000e-75 294.0
4 TraesCS2B01G390600 chr2D 93.750 192 6 4 7062 7250 473713425 473713237 4.280000e-72 283.0
5 TraesCS2B01G390600 chr2A 93.647 5730 192 63 902 6534 615743592 615737938 0.000000e+00 8407.0
6 TraesCS2B01G390600 chr2A 84.123 422 25 12 6838 7252 615737794 615737408 3.200000e-98 370.0
7 TraesCS2B01G390600 chr2A 88.179 313 20 6 64 375 615743916 615743620 2.490000e-94 357.0
8 TraesCS2B01G390600 chr2A 100.000 38 0 0 1 38 602138422 602138459 3.630000e-08 71.3
9 TraesCS2B01G390600 chr6D 78.295 387 61 20 4230 4601 307881119 307881497 2.040000e-55 228.0
10 TraesCS2B01G390600 chr6A 78.182 385 65 18 4230 4601 445048202 445048580 2.040000e-55 228.0
11 TraesCS2B01G390600 chr6B 77.577 388 62 24 4230 4601 475271358 475271736 2.050000e-50 211.0
12 TraesCS2B01G390600 chr6B 100.000 38 0 0 1 38 30729142 30729105 3.630000e-08 71.3
13 TraesCS2B01G390600 chr6B 100.000 38 0 0 1 38 30808111 30808074 3.630000e-08 71.3
14 TraesCS2B01G390600 chr4A 99.074 108 1 0 6573 6680 691126903 691127010 2.060000e-45 195.0
15 TraesCS2B01G390600 chr1B 99.074 108 1 0 6575 6682 583853424 583853531 2.060000e-45 195.0
16 TraesCS2B01G390600 chr1A 99.065 107 1 0 6576 6682 385269112 385269218 7.420000e-45 193.0
17 TraesCS2B01G390600 chr1A 99.057 106 1 0 6575 6680 558592182 558592077 2.670000e-44 191.0
18 TraesCS2B01G390600 chr7B 98.165 109 2 0 6577 6685 275706898 275706790 2.670000e-44 191.0
19 TraesCS2B01G390600 chr7B 95.690 116 3 2 6568 6681 548477331 548477446 1.240000e-42 185.0
20 TraesCS2B01G390600 chr5B 98.148 108 2 0 6574 6681 249707780 249707887 9.600000e-44 189.0
21 TraesCS2B01G390600 chr4B 98.148 108 2 0 6573 6680 665421798 665421905 9.600000e-44 189.0
22 TraesCS2B01G390600 chr4B 100.000 38 0 0 1 38 378764104 378764067 3.630000e-08 71.3
23 TraesCS2B01G390600 chr3B 94.872 117 6 0 6570 6686 243285031 243285147 4.470000e-42 183.0
24 TraesCS2B01G390600 chr3B 97.561 41 1 0 1 41 559888903 559888863 3.630000e-08 71.3
25 TraesCS2B01G390600 chr3B 90.000 50 3 2 1 50 699499793 699499746 6.070000e-06 63.9
26 TraesCS2B01G390600 chr1D 100.000 39 0 0 1 39 234392744 234392782 1.010000e-08 73.1
27 TraesCS2B01G390600 chr7D 100.000 37 0 0 1 37 95116673 95116709 1.310000e-07 69.4
28 TraesCS2B01G390600 chr5D 100.000 37 0 0 1 37 274784537 274784573 1.310000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G390600 chr2B 554452926 554460177 7251 True 13393.000000 13393 100.000000 1 7252 1 chr2B.!!$R1 7251
1 TraesCS2B01G390600 chr2D 473713237 473721007 7770 True 2573.750000 9108 89.979000 93 7250 4 chr2D.!!$R1 7157
2 TraesCS2B01G390600 chr2A 615737408 615743916 6508 True 3044.666667 8407 88.649667 64 7252 3 chr2A.!!$R1 7188

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 572 0.178950 TCTCTCCCCGATCCATCAGG 60.179 60.000 0.00 0.0 0.00 3.86 F
578 586 0.179034 ATCAGGAAATGGCCTCGCTC 60.179 55.000 3.32 0.0 35.66 5.03 F
900 955 0.681887 CGGATTTTAACCCCCGCCTT 60.682 55.000 0.00 0.0 35.29 4.35 F
1216 1289 1.198094 TGCGTGATTCTTCTCCCCCA 61.198 55.000 0.00 0.0 0.00 4.96 F
1372 1445 2.277072 CTCTCCTCCTCCGGCTCA 59.723 66.667 0.00 0.0 0.00 4.26 F
1527 1603 2.744243 GCAGGAGGCTGCTCCAGAT 61.744 63.158 5.20 0.0 45.66 2.90 F
3067 3153 0.103572 AGCTTGCAGTTTGCCTGTTG 59.896 50.000 0.00 0.0 44.23 3.33 F
4403 4497 1.471327 GCCTCTCACTCTGTCAGCATC 60.471 57.143 0.00 0.0 0.00 3.91 F
5546 5682 0.038890 GCCCTGCCTCCTTTTCTCTT 59.961 55.000 0.00 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2069 1.448893 GCGGATGGTACGAAGCCAA 60.449 57.895 0.00 0.00 39.72 4.52 R
2287 2369 1.517832 GATCACACAGTCCTCCCCG 59.482 63.158 0.00 0.00 0.00 5.73 R
2292 2374 2.235650 CAGACATGGATCACACAGTCCT 59.764 50.000 0.00 0.00 37.89 3.85 R
2562 2644 4.164796 ACCAGCATAGATCAAGAACATCCA 59.835 41.667 0.00 0.00 0.00 3.41 R
2657 2740 4.770010 GGGTTGTGGGATTAAATTCAGTGA 59.230 41.667 0.00 0.00 0.00 3.41 R
3279 3365 6.486253 TTGAGAAGCTTGTGTCATGATAAC 57.514 37.500 2.10 1.30 0.00 1.89 R
4717 4811 0.254107 AGGGGGAGAGAGAGAGACCT 60.254 60.000 0.00 0.00 0.00 3.85 R
5640 5776 0.388134 CCGTCGTCGTTTCTCCACAT 60.388 55.000 0.71 0.00 35.01 3.21 R
7033 7298 0.039527 GAAAGCGGCACCGTCAATTT 60.040 50.000 11.27 7.11 42.09 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.539791 ACGTCCGTTTGGGGTCGT 61.540 61.111 0.00 0.00 40.11 4.34
18 19 3.039588 CGTCCGTTTGGGGTCGTG 61.040 66.667 0.00 0.00 36.01 4.35
19 20 3.351416 GTCCGTTTGGGGTCGTGC 61.351 66.667 0.00 0.00 36.01 5.34
20 21 4.973055 TCCGTTTGGGGTCGTGCG 62.973 66.667 0.00 0.00 36.01 5.34
23 24 3.656045 GTTTGGGGTCGTGCGGTG 61.656 66.667 0.00 0.00 0.00 4.94
24 25 4.939368 TTTGGGGTCGTGCGGTGG 62.939 66.667 0.00 0.00 0.00 4.61
28 29 4.309950 GGGTCGTGCGGTGGAGTT 62.310 66.667 0.00 0.00 0.00 3.01
29 30 3.041940 GGTCGTGCGGTGGAGTTG 61.042 66.667 0.00 0.00 0.00 3.16
30 31 3.041940 GTCGTGCGGTGGAGTTGG 61.042 66.667 0.00 0.00 0.00 3.77
31 32 4.980805 TCGTGCGGTGGAGTTGGC 62.981 66.667 0.00 0.00 0.00 4.52
33 34 4.643387 GTGCGGTGGAGTTGGCCT 62.643 66.667 3.32 0.00 0.00 5.19
34 35 3.884774 TGCGGTGGAGTTGGCCTT 61.885 61.111 3.32 0.00 0.00 4.35
35 36 2.349755 GCGGTGGAGTTGGCCTTA 59.650 61.111 3.32 0.00 0.00 2.69
36 37 1.745489 GCGGTGGAGTTGGCCTTAG 60.745 63.158 3.32 0.00 0.00 2.18
37 38 1.078426 CGGTGGAGTTGGCCTTAGG 60.078 63.158 3.32 0.00 0.00 2.69
38 39 1.303282 GGTGGAGTTGGCCTTAGGG 59.697 63.158 3.32 0.00 0.00 3.53
39 40 1.205460 GGTGGAGTTGGCCTTAGGGA 61.205 60.000 3.32 0.00 33.58 4.20
40 41 0.919710 GTGGAGTTGGCCTTAGGGAT 59.080 55.000 3.32 0.00 33.58 3.85
41 42 2.124411 GTGGAGTTGGCCTTAGGGATA 58.876 52.381 3.32 0.00 33.58 2.59
42 43 2.508300 GTGGAGTTGGCCTTAGGGATAA 59.492 50.000 3.32 0.00 33.58 1.75
43 44 3.138468 GTGGAGTTGGCCTTAGGGATAAT 59.862 47.826 3.32 0.00 33.58 1.28
44 45 3.791545 TGGAGTTGGCCTTAGGGATAATT 59.208 43.478 3.32 0.00 33.58 1.40
45 46 4.979039 TGGAGTTGGCCTTAGGGATAATTA 59.021 41.667 3.32 0.00 33.58 1.40
46 47 5.073144 TGGAGTTGGCCTTAGGGATAATTAG 59.927 44.000 3.32 0.00 33.58 1.73
47 48 5.309806 GGAGTTGGCCTTAGGGATAATTAGA 59.690 44.000 3.32 0.00 33.58 2.10
48 49 6.441088 AGTTGGCCTTAGGGATAATTAGAG 57.559 41.667 3.32 0.00 33.58 2.43
49 50 6.151049 AGTTGGCCTTAGGGATAATTAGAGA 58.849 40.000 3.32 0.00 33.58 3.10
50 51 6.795000 AGTTGGCCTTAGGGATAATTAGAGAT 59.205 38.462 3.32 0.00 33.58 2.75
51 52 6.627087 TGGCCTTAGGGATAATTAGAGATG 57.373 41.667 3.32 0.00 33.58 2.90
52 53 5.045578 TGGCCTTAGGGATAATTAGAGATGC 60.046 44.000 3.32 0.00 33.58 3.91
53 54 5.190726 GGCCTTAGGGATAATTAGAGATGCT 59.809 44.000 0.00 0.00 33.58 3.79
54 55 6.345298 GCCTTAGGGATAATTAGAGATGCTC 58.655 44.000 0.00 0.00 33.58 4.26
55 56 6.156083 GCCTTAGGGATAATTAGAGATGCTCT 59.844 42.308 0.00 2.22 38.53 4.09
56 57 7.343316 GCCTTAGGGATAATTAGAGATGCTCTA 59.657 40.741 0.00 0.22 37.10 2.43
57 58 8.912988 CCTTAGGGATAATTAGAGATGCTCTAG 58.087 40.741 4.55 0.00 38.32 2.43
58 59 8.830915 TTAGGGATAATTAGAGATGCTCTAGG 57.169 38.462 4.55 0.00 42.92 3.02
59 60 7.050493 AGGGATAATTAGAGATGCTCTAGGA 57.950 40.000 4.55 0.00 42.92 2.94
60 61 7.125391 AGGGATAATTAGAGATGCTCTAGGAG 58.875 42.308 4.55 0.00 42.92 3.69
156 157 2.543238 GCTCCTTGCTTAATCATGCTGC 60.543 50.000 0.00 0.00 38.95 5.25
179 180 4.215742 CGGGCGCTTATGTCCGGA 62.216 66.667 7.64 0.00 38.93 5.14
180 181 2.588034 GGGCGCTTATGTCCGGAC 60.588 66.667 28.17 28.17 0.00 4.79
181 182 2.960129 GGCGCTTATGTCCGGACG 60.960 66.667 28.70 17.16 0.00 4.79
345 351 2.801631 GGAGGGATGGGCTCGTGAG 61.802 68.421 0.00 0.00 0.00 3.51
427 434 0.758123 GGGAGAGAGGAGCCTTGATG 59.242 60.000 0.00 0.00 0.00 3.07
428 435 1.690845 GGGAGAGAGGAGCCTTGATGA 60.691 57.143 0.00 0.00 0.00 2.92
446 453 3.723235 AATCTCTGCGCGCGATGGT 62.723 57.895 37.18 13.02 0.00 3.55
493 500 3.512516 GGGCTACGTCTACGGCGT 61.513 66.667 19.64 19.64 44.95 5.68
533 541 3.439540 CCCGGGTTTGGCATCGTG 61.440 66.667 14.18 0.00 0.00 4.35
540 548 0.521735 GTTTGGCATCGTGTCCCTTC 59.478 55.000 0.00 0.00 0.00 3.46
542 550 0.400213 TTGGCATCGTGTCCCTTCTT 59.600 50.000 0.00 0.00 0.00 2.52
545 553 1.886542 GGCATCGTGTCCCTTCTTTTT 59.113 47.619 0.00 0.00 0.00 1.94
547 555 2.814336 GCATCGTGTCCCTTCTTTTTCT 59.186 45.455 0.00 0.00 0.00 2.52
549 557 4.319177 CATCGTGTCCCTTCTTTTTCTCT 58.681 43.478 0.00 0.00 0.00 3.10
552 560 3.413327 GTGTCCCTTCTTTTTCTCTCCC 58.587 50.000 0.00 0.00 0.00 4.30
553 561 2.375509 TGTCCCTTCTTTTTCTCTCCCC 59.624 50.000 0.00 0.00 0.00 4.81
554 562 1.628846 TCCCTTCTTTTTCTCTCCCCG 59.371 52.381 0.00 0.00 0.00 5.73
555 563 1.628846 CCCTTCTTTTTCTCTCCCCGA 59.371 52.381 0.00 0.00 0.00 5.14
556 564 2.239907 CCCTTCTTTTTCTCTCCCCGAT 59.760 50.000 0.00 0.00 0.00 4.18
557 565 3.536570 CCTTCTTTTTCTCTCCCCGATC 58.463 50.000 0.00 0.00 0.00 3.69
558 566 3.536570 CTTCTTTTTCTCTCCCCGATCC 58.463 50.000 0.00 0.00 0.00 3.36
559 567 2.546899 TCTTTTTCTCTCCCCGATCCA 58.453 47.619 0.00 0.00 0.00 3.41
560 568 3.115390 TCTTTTTCTCTCCCCGATCCAT 58.885 45.455 0.00 0.00 0.00 3.41
561 569 3.134804 TCTTTTTCTCTCCCCGATCCATC 59.865 47.826 0.00 0.00 0.00 3.51
562 570 2.174685 TTTCTCTCCCCGATCCATCA 57.825 50.000 0.00 0.00 0.00 3.07
563 571 1.709578 TTCTCTCCCCGATCCATCAG 58.290 55.000 0.00 0.00 0.00 2.90
564 572 0.178950 TCTCTCCCCGATCCATCAGG 60.179 60.000 0.00 0.00 0.00 3.86
575 583 0.181114 TCCATCAGGAAATGGCCTCG 59.819 55.000 3.32 0.00 44.98 4.63
576 584 1.450531 CCATCAGGAAATGGCCTCGC 61.451 60.000 3.32 0.00 39.84 5.03
577 585 0.465097 CATCAGGAAATGGCCTCGCT 60.465 55.000 3.32 0.00 35.66 4.93
578 586 0.179034 ATCAGGAAATGGCCTCGCTC 60.179 55.000 3.32 0.00 35.66 5.03
579 587 1.821332 CAGGAAATGGCCTCGCTCC 60.821 63.158 3.32 4.90 35.66 4.70
580 588 1.997874 AGGAAATGGCCTCGCTCCT 60.998 57.895 3.32 7.38 30.76 3.69
581 589 1.821332 GGAAATGGCCTCGCTCCTG 60.821 63.158 3.32 0.00 0.00 3.86
582 590 2.439156 AAATGGCCTCGCTCCTGC 60.439 61.111 3.32 0.00 0.00 4.85
583 591 2.883267 GAAATGGCCTCGCTCCTGCT 62.883 60.000 3.32 0.00 36.97 4.24
584 592 3.694058 AATGGCCTCGCTCCTGCTG 62.694 63.158 3.32 0.00 36.97 4.41
588 638 1.672356 GCCTCGCTCCTGCTGAAAA 60.672 57.895 0.00 0.00 36.97 2.29
608 658 3.842126 CACGATCGGTGTGCGCAG 61.842 66.667 20.98 0.00 41.89 5.18
618 668 4.012895 GTGCGCAGGTCAACGGTG 62.013 66.667 12.22 0.00 0.00 4.94
666 716 1.488812 ACACCACTGCTGTAAACAGGA 59.511 47.619 11.86 8.13 43.94 3.86
675 725 2.159037 GCTGTAAACAGGAGCGTAAACC 59.841 50.000 11.86 0.00 43.94 3.27
677 727 2.035704 TGTAAACAGGAGCGTAAACCGA 59.964 45.455 0.00 0.00 39.56 4.69
685 735 4.138109 CGTAAACCGAACGGCCGC 62.138 66.667 28.58 9.25 39.56 6.53
708 758 1.356938 CGGCCTCATCATCATCATCG 58.643 55.000 0.00 0.00 0.00 3.84
716 766 1.032014 TCATCATCATCGTCGCCAGA 58.968 50.000 0.00 0.00 0.00 3.86
724 774 3.154710 TCATCGTCGCCAGATAATAGGT 58.845 45.455 0.00 0.00 0.00 3.08
734 784 3.243873 CCAGATAATAGGTGCTGAGCGAA 60.244 47.826 0.00 0.00 0.00 4.70
772 822 3.404438 CCCGTCCGAATGGGGGAA 61.404 66.667 0.00 0.00 46.76 3.97
773 823 2.189521 CCGTCCGAATGGGGGAAG 59.810 66.667 0.00 0.00 34.80 3.46
774 824 2.189521 CGTCCGAATGGGGGAAGG 59.810 66.667 0.00 0.00 34.80 3.46
893 948 2.777972 GGCGGCCGGATTTTAACCC 61.778 63.158 29.38 12.40 0.00 4.11
896 951 2.122797 GGCCGGATTTTAACCCCCG 61.123 63.158 5.05 0.00 41.47 5.73
898 953 2.122797 CCGGATTTTAACCCCCGCC 61.123 63.158 0.00 0.00 40.56 6.13
900 955 0.681887 CGGATTTTAACCCCCGCCTT 60.682 55.000 0.00 0.00 35.29 4.35
951 1013 2.030007 CCCGACAGTAAACAGTAACCGA 60.030 50.000 0.00 0.00 0.00 4.69
1085 1156 4.724602 GAGGCAGACGCAGACGCA 62.725 66.667 0.00 0.00 45.53 5.24
1086 1157 4.731612 AGGCAGACGCAGACGCAG 62.732 66.667 0.00 0.00 45.53 5.18
1088 1159 3.474034 GCAGACGCAGACGCAGAC 61.474 66.667 0.00 0.00 45.53 3.51
1089 1160 3.168604 CAGACGCAGACGCAGACG 61.169 66.667 0.00 0.00 45.53 4.18
1090 1161 3.354645 AGACGCAGACGCAGACGA 61.355 61.111 0.00 0.00 45.53 4.20
1195 1266 4.052229 CTGACCCCTCGTCGCGTT 62.052 66.667 5.77 0.00 45.23 4.84
1197 1268 3.745803 GACCCCTCGTCGCGTTCT 61.746 66.667 5.77 0.00 0.00 3.01
1216 1289 1.198094 TGCGTGATTCTTCTCCCCCA 61.198 55.000 0.00 0.00 0.00 4.96
1372 1445 2.277072 CTCTCCTCCTCCGGCTCA 59.723 66.667 0.00 0.00 0.00 4.26
1527 1603 2.744243 GCAGGAGGCTGCTCCAGAT 61.744 63.158 5.20 0.00 45.66 2.90
1987 2069 4.778143 CCCAGGCGCCGCTTTAGT 62.778 66.667 23.20 0.00 0.00 2.24
2287 2369 2.870372 CGCTACCTTGCAAGTGCC 59.130 61.111 24.35 9.21 41.18 5.01
2292 2374 4.659172 CCTTGCAAGTGCCGGGGA 62.659 66.667 24.35 0.00 41.18 4.81
2561 2643 4.163078 TCAAAACTTTTGAGGGGCATTCAA 59.837 37.500 12.12 0.00 33.00 2.69
2562 2644 4.980339 AAACTTTTGAGGGGCATTCAAT 57.020 36.364 4.13 0.00 34.76 2.57
2657 2740 5.525745 TGTTTCGTGTTGACTACAATGTGAT 59.474 36.000 0.00 0.00 38.80 3.06
2884 2970 5.521372 TGATGAACTGACAGATAGCAAATCG 59.479 40.000 10.08 0.00 0.00 3.34
2965 3051 8.604890 GCTCTAAGCGATTACTACTTTGAAATT 58.395 33.333 0.00 0.00 0.00 1.82
3041 3127 6.560253 TCTGTCTTAAAGAAAGGAATGTGC 57.440 37.500 0.00 0.00 35.75 4.57
3067 3153 0.103572 AGCTTGCAGTTTGCCTGTTG 59.896 50.000 0.00 0.00 44.23 3.33
3088 3174 9.166173 CTGTTGTGGTCATTATTTCTATCTTGA 57.834 33.333 0.00 0.00 0.00 3.02
3179 3265 9.541143 CACTGTAATGTTTGTAATTTCCCTTTT 57.459 29.630 0.00 0.00 0.00 2.27
3572 3658 4.668289 CAAAATTTAGCCATCCACGGTAC 58.332 43.478 0.00 0.00 0.00 3.34
3660 3747 2.092699 AGGCCAAGCTGATTCTAGGTTC 60.093 50.000 5.01 0.00 36.34 3.62
3663 3750 3.950395 GCCAAGCTGATTCTAGGTTCAAT 59.050 43.478 0.00 0.00 36.34 2.57
3725 3812 7.496346 AGTATGGAGTTATGTACCCATATGG 57.504 40.000 15.41 15.41 39.80 2.74
3930 4023 8.162880 CGTTCAGTTATGATTTGTCTTACTGTC 58.837 37.037 0.00 0.00 34.73 3.51
3931 4024 9.209175 GTTCAGTTATGATTTGTCTTACTGTCT 57.791 33.333 0.00 0.00 34.73 3.41
4091 4184 5.983720 ACAATTATACCTTACTGTGCTAGCG 59.016 40.000 10.77 0.00 0.00 4.26
4132 4225 2.391616 TGCAATAGTGACTCCAGCAG 57.608 50.000 0.00 0.00 0.00 4.24
4278 4372 6.206634 TGCTTTCGTCTTCAATGGATAAAACT 59.793 34.615 0.00 0.00 0.00 2.66
4281 4375 7.504924 TTCGTCTTCAATGGATAAAACTGTT 57.495 32.000 0.00 0.00 0.00 3.16
4349 4443 7.450074 TCACACTGTGACTATGGTAAGATTTT 58.550 34.615 15.86 0.00 37.67 1.82
4403 4497 1.471327 GCCTCTCACTCTGTCAGCATC 60.471 57.143 0.00 0.00 0.00 3.91
4730 4827 3.010027 TGACACATCAGGTCTCTCTCTCT 59.990 47.826 0.00 0.00 36.26 3.10
4734 4831 0.923358 TCAGGTCTCTCTCTCTCCCC 59.077 60.000 0.00 0.00 0.00 4.81
4735 4832 0.106217 CAGGTCTCTCTCTCTCCCCC 60.106 65.000 0.00 0.00 0.00 5.40
4736 4833 0.254107 AGGTCTCTCTCTCTCCCCCT 60.254 60.000 0.00 0.00 0.00 4.79
4743 4840 1.761667 CTCTCTCCCCCTGCTCTGG 60.762 68.421 0.00 0.00 0.00 3.86
4747 4844 2.607750 TCCCCCTGCTCTGGTGAC 60.608 66.667 0.00 0.00 0.00 3.67
4848 4946 8.677148 TTGACCAGATAATAAGCTTATCCAAC 57.323 34.615 19.11 9.25 33.11 3.77
4852 4950 8.153550 ACCAGATAATAAGCTTATCCAACAGAG 58.846 37.037 19.11 7.42 33.11 3.35
4932 5033 8.288689 TCAGGTGCTTACTTTTAAAAACTTCT 57.711 30.769 1.66 0.00 0.00 2.85
4934 5035 7.973944 CAGGTGCTTACTTTTAAAAACTTCTGT 59.026 33.333 1.66 0.00 0.00 3.41
5132 5239 4.514781 AACGAACATAGCTACTGTGTCA 57.485 40.909 0.00 0.00 34.86 3.58
5133 5240 4.720649 ACGAACATAGCTACTGTGTCAT 57.279 40.909 0.00 0.00 34.86 3.06
5227 5362 5.476945 CCTTGACCTGTTTAACCTATTTGCT 59.523 40.000 0.00 0.00 0.00 3.91
5231 5366 6.653320 TGACCTGTTTAACCTATTTGCTACTG 59.347 38.462 0.00 0.00 0.00 2.74
5244 5379 9.209175 CCTATTTGCTACTGTTACCTATCATTC 57.791 37.037 0.00 0.00 0.00 2.67
5249 5384 9.982651 TTGCTACTGTTACCTATCATTCTATTC 57.017 33.333 0.00 0.00 0.00 1.75
5318 5453 4.287585 TGGTGTGGTAACCAGCTTATAAGT 59.712 41.667 13.91 0.00 45.43 2.24
5334 5469 9.213799 AGCTTATAAGTAATGCTATTTCTGCTC 57.786 33.333 13.91 0.00 31.71 4.26
5351 5486 6.769134 TCTGCTCATTGATTGAATGTGAAT 57.231 33.333 2.68 0.00 42.06 2.57
5406 5541 0.459489 TCAGCAAAGCGCCAAAACTT 59.541 45.000 2.29 0.00 44.04 2.66
5452 5587 7.985184 AGTTGATAGCTCGTAATGTCCAATTAA 59.015 33.333 0.00 0.00 0.00 1.40
5494 5630 9.654663 CTTATATATCTTTCTTTTAGGACGGGG 57.345 37.037 0.00 0.00 0.00 5.73
5505 5641 0.561184 AGGACGGGGTCTGATATCCA 59.439 55.000 0.00 0.00 32.47 3.41
5539 5675 3.710722 CTGACGCCCTGCCTCCTT 61.711 66.667 0.00 0.00 0.00 3.36
5540 5676 3.249189 TGACGCCCTGCCTCCTTT 61.249 61.111 0.00 0.00 0.00 3.11
5541 5677 2.034221 GACGCCCTGCCTCCTTTT 59.966 61.111 0.00 0.00 0.00 2.27
5542 5678 2.034221 ACGCCCTGCCTCCTTTTC 59.966 61.111 0.00 0.00 0.00 2.29
5544 5680 1.746991 CGCCCTGCCTCCTTTTCTC 60.747 63.158 0.00 0.00 0.00 2.87
5546 5682 0.038890 GCCCTGCCTCCTTTTCTCTT 59.961 55.000 0.00 0.00 0.00 2.85
5547 5683 1.548809 GCCCTGCCTCCTTTTCTCTTT 60.549 52.381 0.00 0.00 0.00 2.52
5640 5776 2.147958 GCGAAAACTCCCATGTGTACA 58.852 47.619 0.00 0.00 0.00 2.90
5676 5821 2.694760 GGCCCTGAGCAAAGAAGCG 61.695 63.158 0.00 0.00 46.50 4.68
5731 5876 3.054875 TCCTACGAGTACTTCTACTGCCA 60.055 47.826 0.00 0.00 32.96 4.92
5874 6034 1.139095 GATTTCCAGCAGCAGCAGC 59.861 57.895 3.17 0.46 45.49 5.25
5875 6035 1.592400 GATTTCCAGCAGCAGCAGCA 61.592 55.000 12.92 0.00 45.49 4.41
5876 6036 1.595993 ATTTCCAGCAGCAGCAGCAG 61.596 55.000 12.92 3.65 45.49 4.24
5895 6055 1.009829 GAGCCACAATGACCTAAGCG 58.990 55.000 0.00 0.00 0.00 4.68
5971 6134 2.048127 GCCGACGAAACAGAGCCT 60.048 61.111 0.00 0.00 0.00 4.58
6123 6286 3.608241 CGTCAGAGTATAGTAGCAGCAGC 60.608 52.174 0.00 0.00 42.56 5.25
6124 6287 2.887783 TCAGAGTATAGTAGCAGCAGCC 59.112 50.000 0.00 0.00 43.56 4.85
6127 6290 0.667792 GTATAGTAGCAGCAGCCCGC 60.668 60.000 0.00 0.00 43.56 6.13
6128 6291 1.816863 TATAGTAGCAGCAGCCCGCC 61.817 60.000 0.00 0.00 44.04 6.13
6134 6297 4.845580 CAGCAGCCCGCCCTGTAG 62.846 72.222 0.00 0.00 44.04 2.74
6179 6342 2.056906 AATAGGTGGGAGATGCGGCC 62.057 60.000 0.00 0.00 0.00 6.13
6201 6364 1.607148 GGTTTGCTGTTAGCGGTCTTT 59.393 47.619 0.00 0.00 46.26 2.52
6295 6462 1.257750 TACGCCTGCATGAGAGTGGT 61.258 55.000 0.00 0.00 0.00 4.16
6362 6536 5.160641 CACCCATTTGTATCTGTTTTTCCG 58.839 41.667 0.00 0.00 0.00 4.30
6478 6670 6.726490 AAACTCCGGTGTATACATACAGAT 57.274 37.500 10.03 0.00 43.32 2.90
6482 6674 6.879993 ACTCCGGTGTATACATACAGATAGAG 59.120 42.308 9.18 9.23 43.32 2.43
6484 6676 7.455891 TCCGGTGTATACATACAGATAGAGAA 58.544 38.462 9.18 0.00 43.32 2.87
6536 6770 0.038744 ACAAGTGGCCTTCCAGGATG 59.961 55.000 3.32 0.00 44.48 3.51
6543 6777 2.312741 TGGCCTTCCAGGATGAAATCTT 59.687 45.455 3.32 0.00 39.62 2.40
6544 6778 3.245730 TGGCCTTCCAGGATGAAATCTTT 60.246 43.478 3.32 0.00 39.62 2.52
6548 6782 5.298026 GCCTTCCAGGATGAAATCTTTAGTC 59.702 44.000 3.79 0.00 44.71 2.59
6560 6794 8.237811 TGAAATCTTTAGTCCTGAAGCTTTTT 57.762 30.769 0.00 0.00 28.97 1.94
6576 6810 2.529780 TTTTTGGCTGCACTTCATGG 57.470 45.000 0.50 0.00 0.00 3.66
6577 6811 0.680618 TTTTGGCTGCACTTCATGGG 59.319 50.000 0.50 0.00 0.00 4.00
6578 6812 0.178967 TTTGGCTGCACTTCATGGGA 60.179 50.000 0.50 0.00 0.00 4.37
6579 6813 0.609957 TTGGCTGCACTTCATGGGAG 60.610 55.000 0.50 0.00 0.00 4.30
6580 6814 2.413142 GGCTGCACTTCATGGGAGC 61.413 63.158 0.50 4.91 0.00 4.70
6581 6815 2.413142 GCTGCACTTCATGGGAGCC 61.413 63.158 2.45 0.00 0.00 4.70
6582 6816 2.046023 TGCACTTCATGGGAGCCG 60.046 61.111 0.00 0.00 0.00 5.52
6583 6817 2.825836 GCACTTCATGGGAGCCGG 60.826 66.667 0.00 0.00 0.00 6.13
6584 6818 2.989639 CACTTCATGGGAGCCGGA 59.010 61.111 5.05 0.00 0.00 5.14
6585 6819 1.528824 CACTTCATGGGAGCCGGAT 59.471 57.895 5.05 0.00 0.00 4.18
6586 6820 0.533755 CACTTCATGGGAGCCGGATC 60.534 60.000 12.38 12.38 0.00 3.36
6587 6821 1.072159 CTTCATGGGAGCCGGATCC 59.928 63.158 31.09 31.09 38.76 3.36
6593 6827 3.237741 GGAGCCGGATCCCCTGAG 61.238 72.222 28.96 0.00 32.79 3.35
6594 6828 3.237741 GAGCCGGATCCCCTGAGG 61.238 72.222 9.02 1.78 0.00 3.86
6595 6829 4.095400 AGCCGGATCCCCTGAGGT 62.095 66.667 5.05 0.00 36.75 3.85
6596 6830 2.122989 GCCGGATCCCCTGAGGTA 60.123 66.667 5.05 0.00 36.75 3.08
6597 6831 2.508751 GCCGGATCCCCTGAGGTAC 61.509 68.421 5.05 0.00 36.75 3.34
6598 6832 2.201022 CCGGATCCCCTGAGGTACG 61.201 68.421 6.06 0.00 36.75 3.67
6599 6833 2.201022 CGGATCCCCTGAGGTACGG 61.201 68.421 6.06 0.00 36.75 4.02
6600 6834 2.508751 GGATCCCCTGAGGTACGGC 61.509 68.421 0.00 0.00 36.75 5.68
6601 6835 2.446036 ATCCCCTGAGGTACGGCC 60.446 66.667 0.00 0.00 36.75 6.13
6602 6836 3.326385 ATCCCCTGAGGTACGGCCA 62.326 63.158 2.24 0.00 40.61 5.36
6603 6837 3.782443 CCCCTGAGGTACGGCCAC 61.782 72.222 2.24 0.00 40.61 5.01
6604 6838 3.782443 CCCTGAGGTACGGCCACC 61.782 72.222 2.24 3.24 40.61 4.61
6610 6844 3.688159 GGTACGGCCACCTGACGT 61.688 66.667 2.24 0.00 43.88 4.34
6611 6845 2.341176 GTACGGCCACCTGACGTT 59.659 61.111 2.24 0.00 41.53 3.99
6612 6846 2.025418 GTACGGCCACCTGACGTTG 61.025 63.158 2.24 0.00 41.53 4.10
6613 6847 3.229156 TACGGCCACCTGACGTTGG 62.229 63.158 2.24 6.95 41.53 3.77
6617 6851 4.263572 CCACCTGACGTTGGGCCA 62.264 66.667 0.00 0.00 0.00 5.36
6618 6852 2.978010 CACCTGACGTTGGGCCAC 60.978 66.667 5.23 0.00 0.00 5.01
6619 6853 3.168528 ACCTGACGTTGGGCCACT 61.169 61.111 5.23 0.00 0.00 4.00
6620 6854 2.669569 CCTGACGTTGGGCCACTG 60.670 66.667 5.23 3.70 0.00 3.66
6621 6855 2.425592 CTGACGTTGGGCCACTGA 59.574 61.111 5.23 0.00 0.00 3.41
6622 6856 1.961277 CTGACGTTGGGCCACTGAC 60.961 63.158 5.23 0.00 0.00 3.51
6623 6857 3.041940 GACGTTGGGCCACTGACG 61.042 66.667 23.66 23.66 41.00 4.35
6645 6879 4.368543 GGTCCGGGTCCACACGTC 62.369 72.222 0.00 0.00 42.08 4.34
6646 6880 3.608662 GTCCGGGTCCACACGTCA 61.609 66.667 0.00 0.00 42.08 4.35
6647 6881 3.299977 TCCGGGTCCACACGTCAG 61.300 66.667 0.00 0.00 42.08 3.51
6650 6884 3.986006 GGGTCCACACGTCAGCGA 61.986 66.667 0.00 0.00 42.00 4.93
6651 6885 2.430921 GGTCCACACGTCAGCGAG 60.431 66.667 0.00 0.00 42.00 5.03
6652 6886 2.335369 GTCCACACGTCAGCGAGT 59.665 61.111 0.00 0.00 42.28 4.18
6665 6899 4.746951 CGAGTGCGCCGTACGTCA 62.747 66.667 15.21 6.28 46.11 4.35
6666 6900 2.874780 GAGTGCGCCGTACGTCAG 60.875 66.667 15.21 6.03 46.11 3.51
6667 6901 3.318539 GAGTGCGCCGTACGTCAGA 62.319 63.158 15.21 0.00 46.11 3.27
6668 6902 2.874780 GTGCGCCGTACGTCAGAG 60.875 66.667 15.21 1.85 46.11 3.35
6669 6903 4.111016 TGCGCCGTACGTCAGAGG 62.111 66.667 15.21 0.00 46.11 3.69
6670 6904 3.807538 GCGCCGTACGTCAGAGGA 61.808 66.667 15.21 0.00 46.11 3.71
6671 6905 2.403987 CGCCGTACGTCAGAGGAG 59.596 66.667 15.21 0.00 36.87 3.69
6672 6906 2.102553 GCCGTACGTCAGAGGAGC 59.897 66.667 15.21 3.74 0.00 4.70
6673 6907 2.408241 GCCGTACGTCAGAGGAGCT 61.408 63.158 15.21 0.00 0.00 4.09
6674 6908 1.429825 CCGTACGTCAGAGGAGCTG 59.570 63.158 15.21 0.00 46.31 4.24
6675 6909 1.226435 CGTACGTCAGAGGAGCTGC 60.226 63.158 7.22 0.00 44.52 5.25
6676 6910 1.226435 GTACGTCAGAGGAGCTGCG 60.226 63.158 0.00 0.00 44.52 5.18
6677 6911 2.986413 ACGTCAGAGGAGCTGCGT 60.986 61.111 0.00 0.00 45.57 5.24
6678 6912 1.645704 TACGTCAGAGGAGCTGCGTC 61.646 60.000 14.59 0.00 46.59 5.19
6679 6913 2.183046 GTCAGAGGAGCTGCGTCC 59.817 66.667 0.00 9.30 44.52 4.79
6680 6914 3.071206 TCAGAGGAGCTGCGTCCC 61.071 66.667 12.53 7.40 44.52 4.46
6681 6915 3.385384 CAGAGGAGCTGCGTCCCA 61.385 66.667 12.53 0.00 37.90 4.37
6706 6940 7.869429 CACTTCATGTATGTGTATGCTCTATCA 59.131 37.037 0.00 0.00 0.00 2.15
6710 6944 7.756722 TCATGTATGTGTATGCTCTATCATTCG 59.243 37.037 0.00 0.00 0.00 3.34
6716 6950 5.627367 GTGTATGCTCTATCATTCGACTGTC 59.373 44.000 2.44 0.00 0.00 3.51
6721 6955 4.283678 CTCTATCATTCGACTGTCGGTTC 58.716 47.826 27.69 0.00 40.88 3.62
6726 6965 1.034356 TTCGACTGTCGGTTCCTTGA 58.966 50.000 27.69 5.16 40.88 3.02
6739 6978 4.593956 GGTTCCTTGAACTGATGGAATCT 58.406 43.478 6.89 0.00 40.52 2.40
6740 6979 5.012893 GGTTCCTTGAACTGATGGAATCTT 58.987 41.667 6.89 0.00 40.52 2.40
6756 6995 5.945784 TGGAATCTTTGCTACTAATTGCACT 59.054 36.000 0.00 0.00 39.05 4.40
6765 7004 4.571176 GCTACTAATTGCACTTGTACCTCC 59.429 45.833 0.00 0.00 0.00 4.30
6774 7013 2.107041 CTTGTACCTCCACCGTGCCA 62.107 60.000 0.00 0.00 0.00 4.92
6778 7017 3.941188 CCTCCACCGTGCCAGTGT 61.941 66.667 0.00 0.00 33.20 3.55
6785 7024 1.402259 CACCGTGCCAGTGTGTTTTTA 59.598 47.619 0.00 0.00 0.00 1.52
6812 7057 2.100631 GCTCAACCATGACCGTCGG 61.101 63.158 10.48 10.48 0.00 4.79
6813 7058 1.589630 CTCAACCATGACCGTCGGA 59.410 57.895 20.51 0.00 0.00 4.55
6814 7059 0.458543 CTCAACCATGACCGTCGGAG 60.459 60.000 20.51 4.57 0.00 4.63
6815 7060 2.100631 CAACCATGACCGTCGGAGC 61.101 63.158 20.51 10.11 0.00 4.70
6816 7061 3.642778 AACCATGACCGTCGGAGCG 62.643 63.158 20.51 3.00 0.00 5.03
6828 7073 4.765611 GGAGCGCCGTTCAATTTC 57.234 55.556 2.29 0.00 0.00 2.17
6831 7076 2.202427 GCGCCGTTCAATTTCCCG 60.202 61.111 0.00 0.00 0.00 5.14
6832 7077 2.202427 CGCCGTTCAATTTCCCGC 60.202 61.111 0.00 0.00 0.00 6.13
6834 7079 2.631580 GCCGTTCAATTTCCCGCCA 61.632 57.895 0.00 0.00 0.00 5.69
6835 7080 1.506262 CCGTTCAATTTCCCGCCAG 59.494 57.895 0.00 0.00 0.00 4.85
6879 7143 1.738099 GTGCAGACACGGTAGCAGG 60.738 63.158 0.00 0.00 37.72 4.85
6923 7188 3.364465 CCTGCGATCTGATACTACTGACG 60.364 52.174 0.00 0.00 0.00 4.35
7020 7285 0.465460 GACAGTGGAGTGTGGCCAAA 60.465 55.000 7.24 0.00 37.12 3.28
7033 7298 3.764434 TGTGGCCAAACAAAACAGTTAGA 59.236 39.130 7.24 0.00 0.00 2.10
7047 7312 2.073816 AGTTAGAAATTGACGGTGCCG 58.926 47.619 9.29 9.29 46.03 5.69
7053 7318 2.182614 AATTGACGGTGCCGCTTTCG 62.183 55.000 10.87 0.00 44.19 3.46
7076 7957 0.731514 TGCGTCGTCTCCGTTGAATC 60.732 55.000 0.00 0.00 35.01 2.52
7077 7958 1.411493 GCGTCGTCTCCGTTGAATCC 61.411 60.000 0.00 0.00 35.01 3.01
7078 7959 0.170561 CGTCGTCTCCGTTGAATCCT 59.829 55.000 0.00 0.00 35.01 3.24
7079 7960 1.794437 CGTCGTCTCCGTTGAATCCTC 60.794 57.143 0.00 0.00 35.01 3.71
7080 7961 0.815734 TCGTCTCCGTTGAATCCTCC 59.184 55.000 0.00 0.00 35.01 4.30
7081 7962 0.530744 CGTCTCCGTTGAATCCTCCA 59.469 55.000 0.00 0.00 0.00 3.86
7122 8008 4.036734 TGCAACTCCACAAACTTCAAGATC 59.963 41.667 0.00 0.00 0.00 2.75
7123 8009 4.036734 GCAACTCCACAAACTTCAAGATCA 59.963 41.667 0.00 0.00 0.00 2.92
7137 8023 3.132824 TCAAGATCACATGCTGGACGTAT 59.867 43.478 0.00 0.00 0.00 3.06
7138 8024 3.377346 AGATCACATGCTGGACGTATC 57.623 47.619 0.00 0.00 0.00 2.24
7139 8025 2.961741 AGATCACATGCTGGACGTATCT 59.038 45.455 0.00 0.00 0.00 1.98
7140 8026 2.584492 TCACATGCTGGACGTATCTG 57.416 50.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.539791 ACGACCCCAAACGGACGT 61.540 61.111 0.00 0.00 38.78 4.34
1 2 3.039588 CACGACCCCAAACGGACG 61.040 66.667 0.00 0.00 37.29 4.79
2 3 3.351416 GCACGACCCCAAACGGAC 61.351 66.667 0.00 0.00 0.00 4.79
3 4 4.973055 CGCACGACCCCAAACGGA 62.973 66.667 0.00 0.00 0.00 4.69
6 7 3.656045 CACCGCACGACCCCAAAC 61.656 66.667 0.00 0.00 0.00 2.93
7 8 4.939368 CCACCGCACGACCCCAAA 62.939 66.667 0.00 0.00 0.00 3.28
11 12 4.309950 AACTCCACCGCACGACCC 62.310 66.667 0.00 0.00 0.00 4.46
12 13 3.041940 CAACTCCACCGCACGACC 61.042 66.667 0.00 0.00 0.00 4.79
13 14 3.041940 CCAACTCCACCGCACGAC 61.042 66.667 0.00 0.00 0.00 4.34
14 15 4.980805 GCCAACTCCACCGCACGA 62.981 66.667 0.00 0.00 0.00 4.35
16 17 2.741486 TAAGGCCAACTCCACCGCAC 62.741 60.000 5.01 0.00 0.00 5.34
17 18 2.463589 CTAAGGCCAACTCCACCGCA 62.464 60.000 5.01 0.00 0.00 5.69
18 19 1.745489 CTAAGGCCAACTCCACCGC 60.745 63.158 5.01 0.00 0.00 5.68
19 20 1.078426 CCTAAGGCCAACTCCACCG 60.078 63.158 5.01 0.00 0.00 4.94
20 21 1.205460 TCCCTAAGGCCAACTCCACC 61.205 60.000 5.01 0.00 0.00 4.61
21 22 0.919710 ATCCCTAAGGCCAACTCCAC 59.080 55.000 5.01 0.00 0.00 4.02
22 23 2.579624 TATCCCTAAGGCCAACTCCA 57.420 50.000 5.01 0.00 0.00 3.86
23 24 4.455070 AATTATCCCTAAGGCCAACTCC 57.545 45.455 5.01 0.00 0.00 3.85
24 25 6.270231 TCTCTAATTATCCCTAAGGCCAACTC 59.730 42.308 5.01 0.00 0.00 3.01
25 26 6.151049 TCTCTAATTATCCCTAAGGCCAACT 58.849 40.000 5.01 0.00 0.00 3.16
26 27 6.435292 TCTCTAATTATCCCTAAGGCCAAC 57.565 41.667 5.01 0.00 0.00 3.77
27 28 6.522459 GCATCTCTAATTATCCCTAAGGCCAA 60.522 42.308 5.01 0.00 0.00 4.52
28 29 5.045578 GCATCTCTAATTATCCCTAAGGCCA 60.046 44.000 5.01 0.00 0.00 5.36
29 30 5.190726 AGCATCTCTAATTATCCCTAAGGCC 59.809 44.000 0.00 0.00 0.00 5.19
30 31 6.306643 AGCATCTCTAATTATCCCTAAGGC 57.693 41.667 0.00 0.00 0.00 4.35
52 53 1.910772 CCCATCCCGGCTCCTAGAG 60.911 68.421 0.00 0.00 0.00 2.43
53 54 2.201490 CCCATCCCGGCTCCTAGA 59.799 66.667 0.00 0.00 0.00 2.43
54 55 2.201490 TCCCATCCCGGCTCCTAG 59.799 66.667 0.00 0.00 0.00 3.02
55 56 2.122989 GTCCCATCCCGGCTCCTA 60.123 66.667 0.00 0.00 0.00 2.94
123 124 4.749310 AGGAGCGAGCACAAGCCG 62.749 66.667 0.00 0.00 43.56 5.52
213 214 2.579787 CATCTCGTGTCCGTCGCC 60.580 66.667 0.00 0.00 35.01 5.54
214 215 3.248171 GCATCTCGTGTCCGTCGC 61.248 66.667 0.00 0.00 35.01 5.19
294 295 0.323451 GAAAAACCCATCCTCCGGCT 60.323 55.000 0.00 0.00 0.00 5.52
427 434 2.543383 CATCGCGCGCAGAGATTC 59.457 61.111 32.61 0.00 37.27 2.52
428 435 2.963854 CCATCGCGCGCAGAGATT 60.964 61.111 32.61 11.42 37.27 2.40
446 453 1.293179 CACATGCGGAGTGTCAGGA 59.707 57.895 0.00 0.00 32.44 3.86
493 500 4.155280 GCACGTAAAAAGAAGGAAGGCATA 59.845 41.667 0.00 0.00 0.00 3.14
498 505 2.095919 CGGGCACGTAAAAAGAAGGAAG 60.096 50.000 0.00 0.00 34.81 3.46
533 541 2.615747 CGGGGAGAGAAAAAGAAGGGAC 60.616 54.545 0.00 0.00 0.00 4.46
540 548 3.118261 TGATGGATCGGGGAGAGAAAAAG 60.118 47.826 0.00 0.00 0.00 2.27
542 550 2.435805 CTGATGGATCGGGGAGAGAAAA 59.564 50.000 0.00 0.00 0.00 2.29
545 553 3.446658 CTGATGGATCGGGGAGAGA 57.553 57.895 0.00 0.00 0.00 3.10
558 566 0.465097 AGCGAGGCCATTTCCTGATG 60.465 55.000 5.01 0.00 36.38 3.07
559 567 0.179034 GAGCGAGGCCATTTCCTGAT 60.179 55.000 5.01 0.00 36.38 2.90
560 568 1.221840 GAGCGAGGCCATTTCCTGA 59.778 57.895 5.01 0.00 36.38 3.86
561 569 1.821332 GGAGCGAGGCCATTTCCTG 60.821 63.158 5.01 0.00 36.38 3.86
562 570 1.997874 AGGAGCGAGGCCATTTCCT 60.998 57.895 5.01 8.98 39.67 3.36
563 571 1.821332 CAGGAGCGAGGCCATTTCC 60.821 63.158 5.01 6.50 0.00 3.13
564 572 2.476320 GCAGGAGCGAGGCCATTTC 61.476 63.158 5.01 0.00 0.00 2.17
565 573 2.439156 GCAGGAGCGAGGCCATTT 60.439 61.111 5.01 0.00 0.00 2.32
575 583 0.514691 CGTGTCTTTTCAGCAGGAGC 59.485 55.000 0.00 0.00 42.56 4.70
576 584 2.154854 TCGTGTCTTTTCAGCAGGAG 57.845 50.000 0.00 0.00 0.00 3.69
577 585 2.688507 GATCGTGTCTTTTCAGCAGGA 58.311 47.619 0.00 0.00 0.00 3.86
578 586 1.391485 CGATCGTGTCTTTTCAGCAGG 59.609 52.381 7.03 0.00 0.00 4.85
579 587 1.391485 CCGATCGTGTCTTTTCAGCAG 59.609 52.381 15.09 0.00 0.00 4.24
580 588 1.270094 ACCGATCGTGTCTTTTCAGCA 60.270 47.619 15.09 0.00 0.00 4.41
581 589 1.126846 CACCGATCGTGTCTTTTCAGC 59.873 52.381 15.09 0.00 37.73 4.26
618 668 3.435186 GCTCCTGCTCAAACGCCC 61.435 66.667 0.00 0.00 36.03 6.13
666 716 2.739671 GGCCGTTCGGTTTACGCT 60.740 61.111 12.81 0.00 43.86 5.07
685 735 2.475371 GATGATGATGAGGCCGGGGG 62.475 65.000 2.18 0.00 0.00 5.40
708 758 2.035961 TCAGCACCTATTATCTGGCGAC 59.964 50.000 0.00 0.00 0.00 5.19
716 766 2.743938 CGTTCGCTCAGCACCTATTAT 58.256 47.619 0.00 0.00 0.00 1.28
759 809 3.792736 CGCCTTCCCCCATTCGGA 61.793 66.667 0.00 0.00 0.00 4.55
827 877 2.649034 GACACGAGTCGAAGGGCA 59.351 61.111 21.50 0.00 34.60 5.36
849 899 2.920912 GGACCCGTCTGTCACCCA 60.921 66.667 0.00 0.00 36.97 4.51
898 953 1.250840 CCCCTTGGCCTTTTCGGAAG 61.251 60.000 3.32 0.00 33.16 3.46
900 955 2.438795 CCCCTTGGCCTTTTCGGA 59.561 61.111 3.32 0.00 33.16 4.55
951 1013 3.634910 GTCCTTGTTGTGTTTACCACCAT 59.365 43.478 0.00 0.00 43.85 3.55
1109 1180 1.153823 CGGAATCGCGACAGGTTCT 60.154 57.895 12.93 0.00 0.00 3.01
1195 1266 0.537188 GGGGAGAAGAATCACGCAGA 59.463 55.000 0.00 0.00 32.02 4.26
1197 1268 1.198094 TGGGGGAGAAGAATCACGCA 61.198 55.000 0.00 0.00 42.63 5.24
1234 1307 3.468326 GAGGAGGAATCGCTGGCCC 62.468 68.421 0.00 0.00 0.00 5.80
1236 1309 2.279784 CGAGGAGGAATCGCTGGC 60.280 66.667 0.00 0.00 32.81 4.85
1266 1339 3.554692 CTCGCGCATTGACCGACC 61.555 66.667 8.75 0.00 0.00 4.79
1268 1341 4.812476 CCCTCGCGCATTGACCGA 62.812 66.667 8.75 0.00 0.00 4.69
1928 2010 2.665603 GGAGCTGGACCTGTGGAC 59.334 66.667 0.00 0.00 0.00 4.02
1982 2064 3.602483 GGATGGTACGAAGCCAACTAAA 58.398 45.455 0.00 0.00 39.72 1.85
1987 2069 1.448893 GCGGATGGTACGAAGCCAA 60.449 57.895 0.00 0.00 39.72 4.52
2231 2313 2.377531 TGATACTCCAGATAGGCCCGTA 59.622 50.000 0.00 0.00 37.29 4.02
2237 2319 6.459923 GGCTAAACTTGATACTCCAGATAGG 58.540 44.000 0.00 0.00 39.47 2.57
2287 2369 1.517832 GATCACACAGTCCTCCCCG 59.482 63.158 0.00 0.00 0.00 5.73
2292 2374 2.235650 CAGACATGGATCACACAGTCCT 59.764 50.000 0.00 0.00 37.89 3.85
2561 2643 5.163120 ACCAGCATAGATCAAGAACATCCAT 60.163 40.000 0.00 0.00 0.00 3.41
2562 2644 4.164796 ACCAGCATAGATCAAGAACATCCA 59.835 41.667 0.00 0.00 0.00 3.41
2657 2740 4.770010 GGGTTGTGGGATTAAATTCAGTGA 59.230 41.667 0.00 0.00 0.00 3.41
2884 2970 7.360361 CCTGTGTTTCTAAACCACTACAATTC 58.640 38.462 3.27 0.00 38.11 2.17
3088 3174 7.643569 TTGATTCAATTGCCACTACATGTAT 57.356 32.000 5.91 0.00 0.00 2.29
3279 3365 6.486253 TTGAGAAGCTTGTGTCATGATAAC 57.514 37.500 2.10 1.30 0.00 1.89
3660 3747 8.059798 AGTAGAATGGATTTGACCTTCAATTG 57.940 34.615 0.00 0.00 36.11 2.32
3663 3750 8.041323 GTCTAGTAGAATGGATTTGACCTTCAA 58.959 37.037 0.17 0.00 34.03 2.69
3725 3812 7.344134 ACTATTAAAACCTGGGACATCCTAAC 58.656 38.462 0.00 0.00 38.20 2.34
3776 3869 4.261322 CCATGGGCAAGAACATTCGATAAG 60.261 45.833 2.85 0.00 0.00 1.73
3779 3872 2.026641 CCATGGGCAAGAACATTCGAT 58.973 47.619 2.85 0.00 0.00 3.59
3868 3961 7.320443 TCAAACTCCATGAGTAATAACATGC 57.680 36.000 0.00 0.00 42.59 4.06
3930 4023 4.098196 GGTGCAGGTCCTAGTTTCTAGTAG 59.902 50.000 0.00 0.00 0.00 2.57
3931 4024 4.021916 GGTGCAGGTCCTAGTTTCTAGTA 58.978 47.826 0.00 0.00 0.00 1.82
3932 4025 2.832733 GGTGCAGGTCCTAGTTTCTAGT 59.167 50.000 0.00 0.00 0.00 2.57
4091 4184 6.867816 TGCAAATTGTGAAGTTTGGATATGTC 59.132 34.615 0.00 0.00 36.19 3.06
4200 4293 8.697507 AGATAAGAAATTTTGTGAAGACACCT 57.302 30.769 0.00 0.00 45.40 4.00
4278 4372 6.429692 CACTTGACATGTCCCATAACTTAACA 59.570 38.462 22.85 0.00 0.00 2.41
4281 4375 6.121776 ACACTTGACATGTCCCATAACTTA 57.878 37.500 22.85 0.00 0.00 2.24
4717 4811 0.254107 AGGGGGAGAGAGAGAGACCT 60.254 60.000 0.00 0.00 0.00 3.85
4730 4827 2.607750 GTCACCAGAGCAGGGGGA 60.608 66.667 0.00 0.00 34.82 4.81
4734 4831 2.234661 TGTCATAAGTCACCAGAGCAGG 59.765 50.000 0.00 0.00 0.00 4.85
4735 4832 3.599730 TGTCATAAGTCACCAGAGCAG 57.400 47.619 0.00 0.00 0.00 4.24
4736 4833 4.558226 AATGTCATAAGTCACCAGAGCA 57.442 40.909 0.00 0.00 0.00 4.26
4743 4840 9.846248 AATAAGCTTGAAAATGTCATAAGTCAC 57.154 29.630 9.86 0.00 35.70 3.67
4848 4946 5.585390 AGTTTGCAAGTCAATTTGTCTCTG 58.415 37.500 0.00 0.38 34.12 3.35
4852 4950 8.868916 TCTTTTTAGTTTGCAAGTCAATTTGTC 58.131 29.630 0.00 0.00 34.12 3.18
4932 5033 2.028112 GCCTGGTGTCAGAACAGATACA 60.028 50.000 0.00 0.00 43.49 2.29
4934 5035 1.555075 GGCCTGGTGTCAGAACAGATA 59.445 52.381 0.00 0.00 43.49 1.98
5227 5362 8.297426 CAGCGAATAGAATGATAGGTAACAGTA 58.703 37.037 0.00 0.00 41.41 2.74
5231 5366 9.077674 CATACAGCGAATAGAATGATAGGTAAC 57.922 37.037 0.00 0.00 0.00 2.50
5244 5379 6.893958 ACAGAACTTTCATACAGCGAATAG 57.106 37.500 0.00 0.00 0.00 1.73
5249 5384 6.366332 ACTCTAAACAGAACTTTCATACAGCG 59.634 38.462 0.00 0.00 0.00 5.18
5318 5453 8.454570 TCAATCAATGAGCAGAAATAGCATTA 57.545 30.769 0.00 0.00 33.04 1.90
5334 5469 5.968254 TCCACCATTCACATTCAATCAATG 58.032 37.500 0.00 0.00 46.70 2.82
5363 5498 4.660168 AGGAAGAACATGACAGCAGAAAT 58.340 39.130 0.00 0.00 0.00 2.17
5406 5541 3.134623 ACTCAACACAGTGGATTCTGACA 59.865 43.478 5.31 0.00 38.63 3.58
5468 5604 9.654663 CCCCGTCCTAAAAGAAAGATATATAAG 57.345 37.037 0.00 0.00 0.00 1.73
5469 5605 9.162733 ACCCCGTCCTAAAAGAAAGATATATAA 57.837 33.333 0.00 0.00 0.00 0.98
5470 5606 8.731591 ACCCCGTCCTAAAAGAAAGATATATA 57.268 34.615 0.00 0.00 0.00 0.86
5471 5607 7.513091 AGACCCCGTCCTAAAAGAAAGATATAT 59.487 37.037 0.00 0.00 32.18 0.86
5472 5608 6.842807 AGACCCCGTCCTAAAAGAAAGATATA 59.157 38.462 0.00 0.00 32.18 0.86
5475 5611 3.844804 AGACCCCGTCCTAAAAGAAAGAT 59.155 43.478 0.00 0.00 32.18 2.40
5480 5616 2.314071 TCAGACCCCGTCCTAAAAGA 57.686 50.000 0.00 0.00 32.18 2.52
5494 5630 6.706270 ACCGACAAAACATATGGATATCAGAC 59.294 38.462 7.80 0.00 0.00 3.51
5505 5641 3.120338 CGTCAGCAACCGACAAAACATAT 60.120 43.478 0.00 0.00 32.72 1.78
5533 5669 4.520874 GGAAACCTGAAAGAGAAAAGGAGG 59.479 45.833 0.00 0.00 34.07 4.30
5534 5670 4.214332 CGGAAACCTGAAAGAGAAAAGGAG 59.786 45.833 0.00 0.00 34.07 3.69
5535 5671 4.134563 CGGAAACCTGAAAGAGAAAAGGA 58.865 43.478 0.00 0.00 34.07 3.36
5537 5673 5.751243 TTCGGAAACCTGAAAGAGAAAAG 57.249 39.130 0.00 0.00 34.07 2.27
5539 5675 4.944930 TGTTTCGGAAACCTGAAAGAGAAA 59.055 37.500 25.99 4.79 40.67 2.52
5540 5676 4.334481 GTGTTTCGGAAACCTGAAAGAGAA 59.666 41.667 25.99 5.25 40.67 2.87
5541 5677 3.875134 GTGTTTCGGAAACCTGAAAGAGA 59.125 43.478 25.99 5.90 40.67 3.10
5542 5678 3.003378 GGTGTTTCGGAAACCTGAAAGAG 59.997 47.826 25.99 0.00 40.67 2.85
5544 5680 2.685897 TGGTGTTTCGGAAACCTGAAAG 59.314 45.455 25.99 0.00 40.67 2.62
5546 5682 2.421751 TGGTGTTTCGGAAACCTGAA 57.578 45.000 25.99 8.84 40.67 3.02
5547 5683 2.018515 GTTGGTGTTTCGGAAACCTGA 58.981 47.619 25.99 9.17 40.67 3.86
5594 5730 2.881513 TGAGATCACGTATCTGCCTCTC 59.118 50.000 10.86 5.62 45.35 3.20
5640 5776 0.388134 CCGTCGTCGTTTCTCCACAT 60.388 55.000 0.71 0.00 35.01 3.21
5789 5934 0.402121 GCTTCCTCCTGGAGTTGGTT 59.598 55.000 21.70 0.00 44.24 3.67
5874 6034 2.012673 GCTTAGGTCATTGTGGCTCTG 58.987 52.381 0.00 0.00 0.00 3.35
5875 6035 1.406069 CGCTTAGGTCATTGTGGCTCT 60.406 52.381 0.00 0.00 0.00 4.09
5876 6036 1.009829 CGCTTAGGTCATTGTGGCTC 58.990 55.000 0.00 0.00 0.00 4.70
5881 6041 0.606604 ACCGTCGCTTAGGTCATTGT 59.393 50.000 0.00 0.00 35.50 2.71
6179 6342 0.517316 GACCGCTAACAGCAAACCAG 59.483 55.000 0.00 0.00 42.58 4.00
6201 6364 2.379634 CGCATTCGCACGGAACTCA 61.380 57.895 0.00 0.00 37.50 3.41
6456 6648 7.229308 TCTATCTGTATGTATACACCGGAGTT 58.771 38.462 9.46 0.00 38.28 3.01
6457 6649 6.776744 TCTATCTGTATGTATACACCGGAGT 58.223 40.000 9.46 9.84 38.28 3.85
6461 6653 9.961265 TTTTTCTCTATCTGTATGTATACACCG 57.039 33.333 7.96 0.00 38.28 4.94
6484 6676 5.297527 CCCACCACTACGAAAACTAGTTTTT 59.702 40.000 29.26 19.22 42.26 1.94
6489 6681 3.672767 ACCCACCACTACGAAAACTAG 57.327 47.619 0.00 0.00 0.00 2.57
6490 6682 3.552684 CGAACCCACCACTACGAAAACTA 60.553 47.826 0.00 0.00 0.00 2.24
6498 6698 4.454728 TGTATAACGAACCCACCACTAC 57.545 45.455 0.00 0.00 0.00 2.73
6560 6794 0.609957 CTCCCATGAAGTGCAGCCAA 60.610 55.000 0.00 0.00 0.00 4.52
6561 6795 1.001764 CTCCCATGAAGTGCAGCCA 60.002 57.895 0.00 0.00 0.00 4.75
6563 6797 2.413142 GGCTCCCATGAAGTGCAGC 61.413 63.158 0.00 0.00 0.00 5.25
6564 6798 2.110967 CGGCTCCCATGAAGTGCAG 61.111 63.158 0.00 0.00 0.00 4.41
6565 6799 2.046023 CGGCTCCCATGAAGTGCA 60.046 61.111 0.00 0.00 0.00 4.57
6566 6800 2.615227 ATCCGGCTCCCATGAAGTGC 62.615 60.000 0.00 0.00 0.00 4.40
6567 6801 0.533755 GATCCGGCTCCCATGAAGTG 60.534 60.000 0.00 0.00 0.00 3.16
6568 6802 1.700042 GGATCCGGCTCCCATGAAGT 61.700 60.000 13.69 0.00 0.00 3.01
6569 6803 1.072159 GGATCCGGCTCCCATGAAG 59.928 63.158 13.69 0.00 0.00 3.02
6570 6804 3.240491 GGATCCGGCTCCCATGAA 58.760 61.111 13.69 0.00 0.00 2.57
6576 6810 3.237741 CTCAGGGGATCCGGCTCC 61.238 72.222 16.35 16.35 38.33 4.70
6577 6811 2.658321 TACCTCAGGGGATCCGGCTC 62.658 65.000 5.45 0.00 38.76 4.70
6578 6812 2.711899 TACCTCAGGGGATCCGGCT 61.712 63.158 5.45 0.00 38.76 5.52
6579 6813 2.122989 TACCTCAGGGGATCCGGC 60.123 66.667 5.45 0.00 38.76 6.13
6580 6814 2.201022 CGTACCTCAGGGGATCCGG 61.201 68.421 5.45 3.14 38.76 5.14
6581 6815 2.201022 CCGTACCTCAGGGGATCCG 61.201 68.421 5.45 0.00 38.76 4.18
6582 6816 2.508751 GCCGTACCTCAGGGGATCC 61.509 68.421 1.92 1.92 38.76 3.36
6583 6817 2.508751 GGCCGTACCTCAGGGGATC 61.509 68.421 0.00 0.00 38.76 3.36
6584 6818 2.446036 GGCCGTACCTCAGGGGAT 60.446 66.667 0.00 0.00 38.76 3.85
6585 6819 4.000620 TGGCCGTACCTCAGGGGA 62.001 66.667 0.00 0.00 40.22 4.81
6586 6820 3.782443 GTGGCCGTACCTCAGGGG 61.782 72.222 0.00 0.00 40.22 4.79
6587 6821 3.782443 GGTGGCCGTACCTCAGGG 61.782 72.222 4.97 0.00 40.22 4.45
6593 6827 3.230522 AACGTCAGGTGGCCGTACC 62.231 63.158 3.98 3.98 41.17 3.34
6594 6828 2.025418 CAACGTCAGGTGGCCGTAC 61.025 63.158 0.00 0.00 33.88 3.67
6595 6829 2.340809 CAACGTCAGGTGGCCGTA 59.659 61.111 0.00 0.00 33.88 4.02
6601 6835 2.978010 GTGGCCCAACGTCAGGTG 60.978 66.667 0.00 0.00 34.07 4.00
6602 6836 3.168528 AGTGGCCCAACGTCAGGT 61.169 61.111 0.00 0.00 0.00 4.00
6603 6837 2.669569 CAGTGGCCCAACGTCAGG 60.670 66.667 0.00 0.00 0.00 3.86
6604 6838 1.961277 GTCAGTGGCCCAACGTCAG 60.961 63.158 0.00 0.00 0.00 3.51
6605 6839 2.110213 GTCAGTGGCCCAACGTCA 59.890 61.111 0.00 0.00 0.00 4.35
6606 6840 3.041940 CGTCAGTGGCCCAACGTC 61.042 66.667 0.00 0.00 0.00 4.34
6628 6862 4.368543 GACGTGTGGACCCGGACC 62.369 72.222 0.73 6.89 0.00 4.46
6629 6863 3.569049 CTGACGTGTGGACCCGGAC 62.569 68.421 0.73 0.00 0.00 4.79
6630 6864 3.299977 CTGACGTGTGGACCCGGA 61.300 66.667 0.73 0.00 0.00 5.14
6633 6867 3.916392 CTCGCTGACGTGTGGACCC 62.916 68.421 0.00 0.00 41.18 4.46
6634 6868 2.430921 CTCGCTGACGTGTGGACC 60.431 66.667 0.00 0.00 41.18 4.46
6635 6869 2.335369 ACTCGCTGACGTGTGGAC 59.665 61.111 0.00 0.00 43.76 4.02
6648 6882 4.746951 TGACGTACGGCGCACTCG 62.747 66.667 21.06 6.32 46.11 4.18
6649 6883 2.874780 CTGACGTACGGCGCACTC 60.875 66.667 21.06 7.29 46.11 3.51
6650 6884 3.324099 CTCTGACGTACGGCGCACT 62.324 63.158 21.06 0.00 46.11 4.40
6651 6885 2.874780 CTCTGACGTACGGCGCAC 60.875 66.667 21.06 2.50 46.11 5.34
6652 6886 4.111016 CCTCTGACGTACGGCGCA 62.111 66.667 21.06 13.22 46.11 6.09
6653 6887 3.736482 CTCCTCTGACGTACGGCGC 62.736 68.421 21.06 0.00 46.11 6.53
6655 6889 2.102553 GCTCCTCTGACGTACGGC 59.897 66.667 21.06 18.72 0.00 5.68
6656 6890 1.429825 CAGCTCCTCTGACGTACGG 59.570 63.158 21.06 1.50 45.72 4.02
6657 6891 1.226435 GCAGCTCCTCTGACGTACG 60.226 63.158 15.01 15.01 45.72 3.67
6658 6892 1.226435 CGCAGCTCCTCTGACGTAC 60.226 63.158 0.00 0.00 45.72 3.67
6659 6893 1.645704 GACGCAGCTCCTCTGACGTA 61.646 60.000 11.86 0.00 46.96 3.57
6660 6894 2.986413 ACGCAGCTCCTCTGACGT 60.986 61.111 0.00 0.00 45.72 4.34
6661 6895 2.202544 GACGCAGCTCCTCTGACG 60.203 66.667 0.00 2.37 45.72 4.35
6662 6896 2.183046 GGACGCAGCTCCTCTGAC 59.817 66.667 4.17 0.00 45.72 3.51
6663 6897 3.071206 GGGACGCAGCTCCTCTGA 61.071 66.667 9.85 0.00 45.72 3.27
6664 6898 3.385384 TGGGACGCAGCTCCTCTG 61.385 66.667 9.85 0.00 45.62 3.35
6665 6899 3.386237 GTGGGACGCAGCTCCTCT 61.386 66.667 9.85 0.00 39.55 3.69
6666 6900 2.844072 GAAGTGGGACGCAGCTCCTC 62.844 65.000 9.85 1.86 44.14 3.71
6667 6901 2.925170 AAGTGGGACGCAGCTCCT 60.925 61.111 9.85 0.00 44.14 3.69
6668 6902 2.435059 GAAGTGGGACGCAGCTCC 60.435 66.667 0.00 3.00 44.14 4.70
6669 6903 1.078848 ATGAAGTGGGACGCAGCTC 60.079 57.895 0.00 0.00 44.14 4.09
6670 6904 1.376424 CATGAAGTGGGACGCAGCT 60.376 57.895 0.00 0.00 44.14 4.24
6671 6905 0.391130 TACATGAAGTGGGACGCAGC 60.391 55.000 0.00 0.00 44.14 5.25
6672 6906 1.935873 CATACATGAAGTGGGACGCAG 59.064 52.381 0.00 0.00 44.14 5.18
6673 6907 1.277842 ACATACATGAAGTGGGACGCA 59.722 47.619 0.00 0.00 44.14 5.24
6674 6908 1.665679 CACATACATGAAGTGGGACGC 59.334 52.381 0.00 0.00 40.45 5.19
6675 6909 2.972625 ACACATACATGAAGTGGGACG 58.027 47.619 16.78 0.00 37.58 4.79
6676 6910 4.273480 GCATACACATACATGAAGTGGGAC 59.727 45.833 16.78 4.79 37.58 4.46
6677 6911 4.164030 AGCATACACATACATGAAGTGGGA 59.836 41.667 16.78 8.25 37.58 4.37
6678 6912 4.454678 AGCATACACATACATGAAGTGGG 58.545 43.478 16.78 8.87 37.58 4.61
6679 6913 5.363101 AGAGCATACACATACATGAAGTGG 58.637 41.667 16.78 5.26 37.58 4.00
6680 6914 7.869429 TGATAGAGCATACACATACATGAAGTG 59.131 37.037 0.00 7.53 39.12 3.16
6681 6915 7.955918 TGATAGAGCATACACATACATGAAGT 58.044 34.615 0.00 0.00 0.00 3.01
6706 6940 1.616865 TCAAGGAACCGACAGTCGAAT 59.383 47.619 24.88 12.17 43.74 3.34
6710 6944 2.135933 CAGTTCAAGGAACCGACAGTC 58.864 52.381 5.54 0.00 42.85 3.51
6716 6950 2.472695 TCCATCAGTTCAAGGAACCG 57.527 50.000 5.54 0.00 42.85 4.44
6721 6955 4.461781 AGCAAAGATTCCATCAGTTCAAGG 59.538 41.667 0.00 0.00 0.00 3.61
6726 6965 8.680903 CAATTAGTAGCAAAGATTCCATCAGTT 58.319 33.333 0.00 0.00 0.00 3.16
6739 6978 6.001460 AGGTACAAGTGCAATTAGTAGCAAA 58.999 36.000 25.41 4.28 43.20 3.68
6740 6979 5.556915 AGGTACAAGTGCAATTAGTAGCAA 58.443 37.500 25.41 4.54 43.20 3.91
6756 6995 2.107041 CTGGCACGGTGGAGGTACAA 62.107 60.000 10.60 0.00 0.00 2.41
6774 7013 5.356751 TGAGCACAGTGAATAAAAACACACT 59.643 36.000 4.15 0.00 43.05 3.55
6778 7017 5.126222 TGGTTGAGCACAGTGAATAAAAACA 59.874 36.000 4.15 0.00 0.00 2.83
6785 7024 2.816087 GTCATGGTTGAGCACAGTGAAT 59.184 45.455 4.15 0.00 30.85 2.57
6794 7033 2.100631 CCGACGGTCATGGTTGAGC 61.101 63.158 5.48 0.00 45.00 4.26
6812 7057 1.136774 GGGAAATTGAACGGCGCTC 59.863 57.895 6.90 4.64 0.00 5.03
6813 7058 2.686816 CGGGAAATTGAACGGCGCT 61.687 57.895 6.90 0.00 0.00 5.92
6814 7059 2.202427 CGGGAAATTGAACGGCGC 60.202 61.111 6.90 0.00 0.00 6.53
6815 7060 2.202427 GCGGGAAATTGAACGGCG 60.202 61.111 4.80 4.80 0.00 6.46
6816 7061 2.180769 GGCGGGAAATTGAACGGC 59.819 61.111 6.70 6.70 44.25 5.68
6817 7062 0.958382 TCTGGCGGGAAATTGAACGG 60.958 55.000 0.00 0.00 0.00 4.44
6818 7063 0.447801 CTCTGGCGGGAAATTGAACG 59.552 55.000 0.00 0.00 0.00 3.95
6819 7064 0.171231 GCTCTGGCGGGAAATTGAAC 59.829 55.000 0.00 0.00 0.00 3.18
6820 7065 0.251121 TGCTCTGGCGGGAAATTGAA 60.251 50.000 0.00 0.00 42.25 2.69
6823 7068 1.678970 GGTGCTCTGGCGGGAAATT 60.679 57.895 0.00 0.00 42.25 1.82
6824 7069 2.044946 GGTGCTCTGGCGGGAAAT 60.045 61.111 0.00 0.00 42.25 2.17
6825 7070 4.697756 CGGTGCTCTGGCGGGAAA 62.698 66.667 0.00 0.00 42.25 3.13
6831 7076 2.887568 CGATGTCGGTGCTCTGGC 60.888 66.667 0.00 0.00 35.81 4.85
6832 7077 2.887568 GCGATGTCGGTGCTCTGG 60.888 66.667 4.44 0.00 40.23 3.86
6858 7121 0.242825 TGCTACCGTGTCTGCACTAC 59.757 55.000 0.00 0.00 43.16 2.73
6860 7123 1.290324 CTGCTACCGTGTCTGCACT 59.710 57.895 0.00 0.00 43.16 4.40
6861 7124 1.738099 CCTGCTACCGTGTCTGCAC 60.738 63.158 0.00 0.00 41.97 4.57
6865 7129 1.599606 CTCAGCCTGCTACCGTGTCT 61.600 60.000 0.00 0.00 0.00 3.41
6867 7131 2.650116 CCTCAGCCTGCTACCGTGT 61.650 63.158 0.00 0.00 0.00 4.49
6879 7143 1.336632 ATCTCCTGTGCCTCCTCAGC 61.337 60.000 0.00 0.00 32.58 4.26
6909 7174 2.706273 GCGTCACGTCAGTAGTATCAG 58.294 52.381 0.00 0.00 0.00 2.90
6935 7200 0.602905 GTTCTGGTGTCGTCCCCTTG 60.603 60.000 0.00 0.00 0.00 3.61
6938 7203 2.048503 CGTTCTGGTGTCGTCCCC 60.049 66.667 0.00 0.00 0.00 4.81
6991 7256 2.225019 CACTCCACTGTCTGATTGCAAC 59.775 50.000 0.00 0.00 0.00 4.17
7020 7285 6.262601 CACCGTCAATTTCTAACTGTTTTGT 58.737 36.000 0.00 0.00 0.00 2.83
7033 7298 0.039527 GAAAGCGGCACCGTCAATTT 60.040 50.000 11.27 7.11 42.09 1.82
7047 7312 0.798771 AGACGACGCATCTCGAAAGC 60.799 55.000 0.00 0.00 41.67 3.51
7076 7957 5.296283 CAGATAGCAAATCAGAAACTGGAGG 59.704 44.000 0.00 0.00 31.51 4.30
7077 7958 5.220815 GCAGATAGCAAATCAGAAACTGGAG 60.221 44.000 0.00 0.00 44.79 3.86
7078 7959 4.637534 GCAGATAGCAAATCAGAAACTGGA 59.362 41.667 0.00 0.00 44.79 3.86
7079 7960 4.918037 GCAGATAGCAAATCAGAAACTGG 58.082 43.478 0.00 0.00 44.79 4.00
7122 8008 1.929169 CACAGATACGTCCAGCATGTG 59.071 52.381 0.00 0.00 0.00 3.21
7123 8009 1.550524 ACACAGATACGTCCAGCATGT 59.449 47.619 0.00 0.00 0.00 3.21
7137 8023 0.678684 CAGCCATGGCATGACACAGA 60.679 55.000 37.18 0.00 44.88 3.41
7138 8024 1.807226 CAGCCATGGCATGACACAG 59.193 57.895 37.18 12.31 44.88 3.66
7139 8025 2.344981 GCAGCCATGGCATGACACA 61.345 57.895 37.18 0.00 44.88 3.72
7140 8026 2.050350 AGCAGCCATGGCATGACAC 61.050 57.895 37.18 18.97 44.88 3.67
7181 8073 0.393808 CCATGGACCGGTTAGTTGGG 60.394 60.000 9.42 2.23 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.