Multiple sequence alignment - TraesCS2B01G389000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G389000 chr2B 100.000 2261 0 0 1 2261 552027886 552030146 0.000000e+00 4176.0
1 TraesCS2B01G389000 chr2D 89.551 1359 54 29 488 1814 472860393 472861695 0.000000e+00 1642.0
2 TraesCS2B01G389000 chr2D 87.583 451 43 8 1814 2258 472861729 472862172 5.570000e-141 510.0
3 TraesCS2B01G389000 chr2D 88.380 284 22 3 8 291 472843445 472843717 4.650000e-87 331.0
4 TraesCS2B01G389000 chr2A 91.181 1236 57 14 599 1814 614384150 614385353 0.000000e+00 1631.0
5 TraesCS2B01G389000 chr2A 91.962 423 28 3 1 423 614162029 614162445 2.500000e-164 588.0
6 TraesCS2B01G389000 chr2A 90.421 261 17 5 1814 2070 614385387 614385643 1.000000e-88 337.0
7 TraesCS2B01G389000 chr2A 92.308 78 5 1 492 568 614384076 614384153 2.370000e-20 110.0
8 TraesCS2B01G389000 chr6D 91.509 106 6 1 737 839 400462253 400462148 2.340000e-30 143.0
9 TraesCS2B01G389000 chr4D 95.000 40 1 1 1227 1265 503611359 503611320 6.740000e-06 62.1
10 TraesCS2B01G389000 chr6A 100.000 30 0 0 2229 2258 532898946 532898975 3.140000e-04 56.5
11 TraesCS2B01G389000 chr4B 97.059 34 0 1 2229 2261 476365453 476365420 3.140000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G389000 chr2B 552027886 552030146 2260 False 4176.000000 4176 100.000000 1 2261 1 chr2B.!!$F1 2260
1 TraesCS2B01G389000 chr2D 472860393 472862172 1779 False 1076.000000 1642 88.567000 488 2258 2 chr2D.!!$F2 1770
2 TraesCS2B01G389000 chr2A 614384076 614385643 1567 False 692.666667 1631 91.303333 492 2070 3 chr2A.!!$F2 1578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 351 0.039035 GTTAACTGCCCCCACATCCA 59.961 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1556 1597 0.392193 ATTGACCGCTCCAAGCTCTG 60.392 55.0 0.0 0.0 39.6 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.942850 TCCACCAACATCAATAGTATACATATG 57.057 33.333 5.50 0.00 0.00 1.78
28 29 8.668353 CCACCAACATCAATAGTATACATATGC 58.332 37.037 5.50 0.00 0.00 3.14
29 30 9.218440 CACCAACATCAATAGTATACATATGCA 57.782 33.333 5.50 0.00 0.00 3.96
30 31 9.791801 ACCAACATCAATAGTATACATATGCAA 57.208 29.630 5.50 0.00 0.00 4.08
35 36 9.712359 CATCAATAGTATACATATGCAACATGC 57.288 33.333 5.50 0.00 45.29 4.06
36 37 9.676861 ATCAATAGTATACATATGCAACATGCT 57.323 29.630 5.50 3.31 45.31 3.79
39 40 9.942850 AATAGTATACATATGCAACATGCTACA 57.057 29.630 5.50 0.00 45.31 2.74
40 41 9.942850 ATAGTATACATATGCAACATGCTACAA 57.057 29.630 5.50 3.59 45.31 2.41
41 42 8.087982 AGTATACATATGCAACATGCTACAAC 57.912 34.615 5.50 9.35 45.31 3.32
42 43 4.637483 ACATATGCAACATGCTACAACC 57.363 40.909 1.58 0.00 45.31 3.77
43 44 4.015764 ACATATGCAACATGCTACAACCA 58.984 39.130 1.58 0.00 45.31 3.67
44 45 4.462132 ACATATGCAACATGCTACAACCAA 59.538 37.500 1.58 0.00 45.31 3.67
45 46 2.791383 TGCAACATGCTACAACCAAC 57.209 45.000 3.78 0.00 45.31 3.77
46 47 2.027385 TGCAACATGCTACAACCAACA 58.973 42.857 3.78 0.00 45.31 3.33
47 48 2.223688 TGCAACATGCTACAACCAACAC 60.224 45.455 3.78 0.00 45.31 3.32
48 49 2.223688 GCAACATGCTACAACCAACACA 60.224 45.455 0.00 0.00 40.96 3.72
49 50 3.552684 GCAACATGCTACAACCAACACAT 60.553 43.478 0.00 0.00 40.96 3.21
50 51 4.320861 GCAACATGCTACAACCAACACATA 60.321 41.667 0.00 0.00 40.96 2.29
51 52 5.622007 GCAACATGCTACAACCAACACATAT 60.622 40.000 0.00 0.00 40.96 1.78
52 53 6.404184 GCAACATGCTACAACCAACACATATA 60.404 38.462 0.00 0.00 40.96 0.86
53 54 7.681782 GCAACATGCTACAACCAACACATATAT 60.682 37.037 0.00 0.00 40.96 0.86
54 55 8.835439 CAACATGCTACAACCAACACATATATA 58.165 33.333 0.00 0.00 0.00 0.86
55 56 8.607441 ACATGCTACAACCAACACATATATAG 57.393 34.615 0.00 0.00 0.00 1.31
56 57 8.210946 ACATGCTACAACCAACACATATATAGT 58.789 33.333 0.00 0.00 0.00 2.12
57 58 9.056005 CATGCTACAACCAACACATATATAGTT 57.944 33.333 0.00 0.00 0.00 2.24
58 59 8.657074 TGCTACAACCAACACATATATAGTTC 57.343 34.615 0.97 0.00 0.00 3.01
59 60 8.482943 TGCTACAACCAACACATATATAGTTCT 58.517 33.333 0.97 0.00 0.00 3.01
60 61 9.976511 GCTACAACCAACACATATATAGTTCTA 57.023 33.333 0.97 0.00 0.00 2.10
94 95 9.941325 AACATAGATATGATCATTGAAGAGGAC 57.059 33.333 14.65 0.00 37.15 3.85
95 96 9.097946 ACATAGATATGATCATTGAAGAGGACA 57.902 33.333 14.65 0.00 37.15 4.02
96 97 9.939802 CATAGATATGATCATTGAAGAGGACAA 57.060 33.333 14.65 0.00 35.75 3.18
98 99 8.905660 AGATATGATCATTGAAGAGGACAAAG 57.094 34.615 14.65 0.00 0.00 2.77
99 100 8.712103 AGATATGATCATTGAAGAGGACAAAGA 58.288 33.333 14.65 0.00 31.46 2.52
100 101 9.334947 GATATGATCATTGAAGAGGACAAAGAA 57.665 33.333 14.65 0.00 30.87 2.52
101 102 9.690913 ATATGATCATTGAAGAGGACAAAGAAA 57.309 29.630 14.65 0.00 30.87 2.52
102 103 8.591114 ATGATCATTGAAGAGGACAAAGAAAT 57.409 30.769 1.18 0.00 30.87 2.17
103 104 9.690913 ATGATCATTGAAGAGGACAAAGAAATA 57.309 29.630 1.18 0.00 30.87 1.40
104 105 9.519191 TGATCATTGAAGAGGACAAAGAAATAA 57.481 29.630 0.00 0.00 30.87 1.40
134 135 9.632807 TCAAATGAAAAATTATAACCTTCCACG 57.367 29.630 0.00 0.00 0.00 4.94
135 136 9.418045 CAAATGAAAAATTATAACCTTCCACGT 57.582 29.630 0.00 0.00 0.00 4.49
136 137 9.990360 AAATGAAAAATTATAACCTTCCACGTT 57.010 25.926 0.00 0.00 0.00 3.99
137 138 9.634163 AATGAAAAATTATAACCTTCCACGTTC 57.366 29.630 0.00 0.00 0.00 3.95
138 139 7.595604 TGAAAAATTATAACCTTCCACGTTCC 58.404 34.615 0.00 0.00 0.00 3.62
139 140 5.806366 AAATTATAACCTTCCACGTTCCG 57.194 39.130 0.00 0.00 0.00 4.30
140 141 4.741321 ATTATAACCTTCCACGTTCCGA 57.259 40.909 0.00 0.00 0.00 4.55
141 142 2.375173 ATAACCTTCCACGTTCCGAC 57.625 50.000 0.00 0.00 0.00 4.79
142 143 1.331214 TAACCTTCCACGTTCCGACT 58.669 50.000 0.00 0.00 0.00 4.18
143 144 1.331214 AACCTTCCACGTTCCGACTA 58.669 50.000 0.00 0.00 0.00 2.59
144 145 0.886563 ACCTTCCACGTTCCGACTAG 59.113 55.000 0.00 0.00 0.00 2.57
145 146 0.458025 CCTTCCACGTTCCGACTAGC 60.458 60.000 0.00 0.00 0.00 3.42
146 147 0.458025 CTTCCACGTTCCGACTAGCC 60.458 60.000 0.00 0.00 0.00 3.93
147 148 1.180456 TTCCACGTTCCGACTAGCCA 61.180 55.000 0.00 0.00 0.00 4.75
148 149 0.968901 TCCACGTTCCGACTAGCCAT 60.969 55.000 0.00 0.00 0.00 4.40
149 150 0.527817 CCACGTTCCGACTAGCCATC 60.528 60.000 0.00 0.00 0.00 3.51
150 151 0.527817 CACGTTCCGACTAGCCATCC 60.528 60.000 0.00 0.00 0.00 3.51
151 152 0.683504 ACGTTCCGACTAGCCATCCT 60.684 55.000 0.00 0.00 0.00 3.24
152 153 0.460311 CGTTCCGACTAGCCATCCTT 59.540 55.000 0.00 0.00 0.00 3.36
153 154 1.536284 CGTTCCGACTAGCCATCCTTC 60.536 57.143 0.00 0.00 0.00 3.46
154 155 1.480954 GTTCCGACTAGCCATCCTTCA 59.519 52.381 0.00 0.00 0.00 3.02
155 156 2.088104 TCCGACTAGCCATCCTTCAT 57.912 50.000 0.00 0.00 0.00 2.57
156 157 1.688735 TCCGACTAGCCATCCTTCATG 59.311 52.381 0.00 0.00 0.00 3.07
157 158 1.414181 CCGACTAGCCATCCTTCATGT 59.586 52.381 0.00 0.00 0.00 3.21
158 159 2.628178 CCGACTAGCCATCCTTCATGTA 59.372 50.000 0.00 0.00 0.00 2.29
159 160 3.305676 CCGACTAGCCATCCTTCATGTAG 60.306 52.174 0.00 0.00 0.00 2.74
160 161 3.658709 GACTAGCCATCCTTCATGTAGC 58.341 50.000 0.00 0.00 0.00 3.58
161 162 3.312890 ACTAGCCATCCTTCATGTAGCT 58.687 45.455 0.00 0.00 35.09 3.32
162 163 2.926778 AGCCATCCTTCATGTAGCTC 57.073 50.000 0.00 0.00 26.90 4.09
163 164 2.406559 AGCCATCCTTCATGTAGCTCT 58.593 47.619 0.00 0.00 26.90 4.09
164 165 2.104451 AGCCATCCTTCATGTAGCTCTG 59.896 50.000 0.00 0.00 26.90 3.35
165 166 2.158842 GCCATCCTTCATGTAGCTCTGT 60.159 50.000 0.00 0.00 0.00 3.41
166 167 3.683847 GCCATCCTTCATGTAGCTCTGTT 60.684 47.826 0.00 0.00 0.00 3.16
167 168 4.443457 GCCATCCTTCATGTAGCTCTGTTA 60.443 45.833 0.00 0.00 0.00 2.41
168 169 5.295950 CCATCCTTCATGTAGCTCTGTTAG 58.704 45.833 0.00 0.00 0.00 2.34
182 183 5.987777 CTCTGTTAGCAATTCTCTCATGG 57.012 43.478 0.00 0.00 0.00 3.66
183 184 4.194640 TCTGTTAGCAATTCTCTCATGGC 58.805 43.478 0.00 0.00 0.00 4.40
184 185 3.282021 TGTTAGCAATTCTCTCATGGCC 58.718 45.455 0.00 0.00 0.00 5.36
185 186 2.620585 GTTAGCAATTCTCTCATGGCCC 59.379 50.000 0.00 0.00 0.00 5.80
186 187 0.627451 AGCAATTCTCTCATGGCCCA 59.373 50.000 0.00 0.00 0.00 5.36
187 188 0.743097 GCAATTCTCTCATGGCCCAC 59.257 55.000 0.00 0.00 0.00 4.61
188 189 1.684248 GCAATTCTCTCATGGCCCACT 60.684 52.381 0.00 0.00 0.00 4.00
189 190 2.295885 CAATTCTCTCATGGCCCACTC 58.704 52.381 0.00 0.00 0.00 3.51
190 191 0.842635 ATTCTCTCATGGCCCACTCC 59.157 55.000 0.00 0.00 0.00 3.85
191 192 0.252881 TTCTCTCATGGCCCACTCCT 60.253 55.000 0.00 0.00 0.00 3.69
192 193 0.252881 TCTCTCATGGCCCACTCCTT 60.253 55.000 0.00 0.00 0.00 3.36
193 194 0.179936 CTCTCATGGCCCACTCCTTC 59.820 60.000 0.00 0.00 0.00 3.46
194 195 1.225704 CTCATGGCCCACTCCTTCC 59.774 63.158 0.00 0.00 0.00 3.46
195 196 2.276309 CTCATGGCCCACTCCTTCCC 62.276 65.000 0.00 0.00 0.00 3.97
196 197 3.411517 ATGGCCCACTCCTTCCCG 61.412 66.667 0.00 0.00 0.00 5.14
197 198 3.943137 ATGGCCCACTCCTTCCCGA 62.943 63.158 0.00 0.00 0.00 5.14
198 199 3.787001 GGCCCACTCCTTCCCGAG 61.787 72.222 0.00 0.00 35.88 4.63
199 200 4.475135 GCCCACTCCTTCCCGAGC 62.475 72.222 0.00 0.00 32.79 5.03
200 201 2.685380 CCCACTCCTTCCCGAGCT 60.685 66.667 0.00 0.00 32.79 4.09
201 202 1.381327 CCCACTCCTTCCCGAGCTA 60.381 63.158 0.00 0.00 32.79 3.32
202 203 1.395826 CCCACTCCTTCCCGAGCTAG 61.396 65.000 0.00 0.00 32.79 3.42
203 204 0.684805 CCACTCCTTCCCGAGCTAGT 60.685 60.000 0.00 0.00 32.79 2.57
204 205 0.741915 CACTCCTTCCCGAGCTAGTC 59.258 60.000 0.00 0.00 32.79 2.59
205 206 0.626916 ACTCCTTCCCGAGCTAGTCT 59.373 55.000 0.00 0.00 32.79 3.24
206 207 1.006162 ACTCCTTCCCGAGCTAGTCTT 59.994 52.381 0.00 0.00 32.79 3.01
207 208 1.407258 CTCCTTCCCGAGCTAGTCTTG 59.593 57.143 0.00 0.00 0.00 3.02
208 209 1.005569 TCCTTCCCGAGCTAGTCTTGA 59.994 52.381 0.00 0.00 0.00 3.02
209 210 1.825474 CCTTCCCGAGCTAGTCTTGAA 59.175 52.381 0.00 0.00 0.00 2.69
210 211 2.417515 CCTTCCCGAGCTAGTCTTGAAC 60.418 54.545 0.00 0.00 0.00 3.18
211 212 2.217510 TCCCGAGCTAGTCTTGAACT 57.782 50.000 0.00 0.00 42.33 3.01
212 213 2.093106 TCCCGAGCTAGTCTTGAACTC 58.907 52.381 0.00 0.00 39.55 3.01
213 214 1.819288 CCCGAGCTAGTCTTGAACTCA 59.181 52.381 0.00 0.00 39.55 3.41
214 215 2.416162 CCCGAGCTAGTCTTGAACTCAC 60.416 54.545 0.00 0.00 39.55 3.51
215 216 2.416162 CCGAGCTAGTCTTGAACTCACC 60.416 54.545 0.00 0.00 39.55 4.02
216 217 2.416162 CGAGCTAGTCTTGAACTCACCC 60.416 54.545 0.00 0.00 39.55 4.61
217 218 2.829120 GAGCTAGTCTTGAACTCACCCT 59.171 50.000 0.00 0.00 39.55 4.34
218 219 3.243724 AGCTAGTCTTGAACTCACCCTT 58.756 45.455 0.00 0.00 39.55 3.95
219 220 3.007398 AGCTAGTCTTGAACTCACCCTTG 59.993 47.826 0.00 0.00 39.55 3.61
220 221 2.262423 AGTCTTGAACTCACCCTTGC 57.738 50.000 0.00 0.00 30.02 4.01
221 222 1.490490 AGTCTTGAACTCACCCTTGCA 59.510 47.619 0.00 0.00 30.02 4.08
222 223 1.876156 GTCTTGAACTCACCCTTGCAG 59.124 52.381 0.00 0.00 0.00 4.41
223 224 1.202806 TCTTGAACTCACCCTTGCAGG 60.203 52.381 0.00 0.00 34.30 4.85
224 225 0.550914 TTGAACTCACCCTTGCAGGT 59.449 50.000 0.00 0.00 42.40 4.00
225 226 0.550914 TGAACTCACCCTTGCAGGTT 59.449 50.000 0.00 0.00 38.39 3.50
226 227 0.954452 GAACTCACCCTTGCAGGTTG 59.046 55.000 0.00 0.00 38.39 3.77
227 228 0.468029 AACTCACCCTTGCAGGTTGG 60.468 55.000 0.00 0.00 38.39 3.77
228 229 1.151450 CTCACCCTTGCAGGTTGGT 59.849 57.895 0.00 0.00 38.39 3.67
229 230 0.890996 CTCACCCTTGCAGGTTGGTC 60.891 60.000 0.00 0.00 38.39 4.02
230 231 1.152777 CACCCTTGCAGGTTGGTCA 60.153 57.895 0.00 0.00 38.39 4.02
231 232 0.754957 CACCCTTGCAGGTTGGTCAA 60.755 55.000 0.00 0.00 38.39 3.18
232 233 0.188342 ACCCTTGCAGGTTGGTCAAT 59.812 50.000 0.00 0.00 36.44 2.57
233 234 1.341080 CCCTTGCAGGTTGGTCAATT 58.659 50.000 0.00 0.00 31.93 2.32
234 235 1.273327 CCCTTGCAGGTTGGTCAATTC 59.727 52.381 0.00 0.00 31.93 2.17
235 236 1.273327 CCTTGCAGGTTGGTCAATTCC 59.727 52.381 0.00 0.00 0.00 3.01
236 237 1.273327 CTTGCAGGTTGGTCAATTCCC 59.727 52.381 0.00 0.00 0.00 3.97
237 238 0.187117 TGCAGGTTGGTCAATTCCCA 59.813 50.000 0.00 0.00 0.00 4.37
238 239 1.203162 TGCAGGTTGGTCAATTCCCAT 60.203 47.619 0.00 0.00 0.00 4.00
239 240 2.042297 TGCAGGTTGGTCAATTCCCATA 59.958 45.455 0.00 0.00 0.00 2.74
240 241 2.427095 GCAGGTTGGTCAATTCCCATAC 59.573 50.000 0.00 0.00 0.00 2.39
241 242 2.682856 CAGGTTGGTCAATTCCCATACG 59.317 50.000 0.00 0.00 0.00 3.06
242 243 2.574369 AGGTTGGTCAATTCCCATACGA 59.426 45.455 0.00 0.00 0.00 3.43
243 244 3.202151 AGGTTGGTCAATTCCCATACGAT 59.798 43.478 0.00 0.00 0.00 3.73
244 245 3.564225 GGTTGGTCAATTCCCATACGATC 59.436 47.826 0.00 0.00 0.00 3.69
245 246 4.451900 GTTGGTCAATTCCCATACGATCT 58.548 43.478 0.00 0.00 0.00 2.75
246 247 4.771114 TGGTCAATTCCCATACGATCTT 57.229 40.909 0.00 0.00 0.00 2.40
247 248 4.703897 TGGTCAATTCCCATACGATCTTC 58.296 43.478 0.00 0.00 0.00 2.87
248 249 4.163268 TGGTCAATTCCCATACGATCTTCA 59.837 41.667 0.00 0.00 0.00 3.02
249 250 5.123227 GGTCAATTCCCATACGATCTTCAA 58.877 41.667 0.00 0.00 0.00 2.69
250 251 5.007724 GGTCAATTCCCATACGATCTTCAAC 59.992 44.000 0.00 0.00 0.00 3.18
251 252 5.007724 GTCAATTCCCATACGATCTTCAACC 59.992 44.000 0.00 0.00 0.00 3.77
252 253 4.771114 ATTCCCATACGATCTTCAACCA 57.229 40.909 0.00 0.00 0.00 3.67
253 254 4.561500 TTCCCATACGATCTTCAACCAA 57.438 40.909 0.00 0.00 0.00 3.67
254 255 3.869065 TCCCATACGATCTTCAACCAAC 58.131 45.455 0.00 0.00 0.00 3.77
255 256 2.943033 CCCATACGATCTTCAACCAACC 59.057 50.000 0.00 0.00 0.00 3.77
256 257 3.370527 CCCATACGATCTTCAACCAACCT 60.371 47.826 0.00 0.00 0.00 3.50
257 258 4.141801 CCCATACGATCTTCAACCAACCTA 60.142 45.833 0.00 0.00 0.00 3.08
258 259 5.424757 CCATACGATCTTCAACCAACCTAA 58.575 41.667 0.00 0.00 0.00 2.69
259 260 5.878116 CCATACGATCTTCAACCAACCTAAA 59.122 40.000 0.00 0.00 0.00 1.85
260 261 6.373216 CCATACGATCTTCAACCAACCTAAAA 59.627 38.462 0.00 0.00 0.00 1.52
261 262 7.067008 CCATACGATCTTCAACCAACCTAAAAT 59.933 37.037 0.00 0.00 0.00 1.82
262 263 6.894339 ACGATCTTCAACCAACCTAAAATT 57.106 33.333 0.00 0.00 0.00 1.82
263 264 7.284919 ACGATCTTCAACCAACCTAAAATTT 57.715 32.000 0.00 0.00 0.00 1.82
264 265 7.722363 ACGATCTTCAACCAACCTAAAATTTT 58.278 30.769 8.75 8.75 0.00 1.82
265 266 7.865889 ACGATCTTCAACCAACCTAAAATTTTC 59.134 33.333 6.72 0.00 0.00 2.29
266 267 8.082242 CGATCTTCAACCAACCTAAAATTTTCT 58.918 33.333 6.72 0.00 0.00 2.52
267 268 9.764363 GATCTTCAACCAACCTAAAATTTTCTT 57.236 29.630 6.72 0.00 0.00 2.52
268 269 8.940768 TCTTCAACCAACCTAAAATTTTCTTG 57.059 30.769 6.72 7.63 0.00 3.02
269 270 8.754080 TCTTCAACCAACCTAAAATTTTCTTGA 58.246 29.630 6.72 2.38 0.00 3.02
270 271 9.377312 CTTCAACCAACCTAAAATTTTCTTGAA 57.623 29.630 6.72 8.90 0.00 2.69
271 272 8.940768 TCAACCAACCTAAAATTTTCTTGAAG 57.059 30.769 6.72 0.00 0.00 3.02
272 273 7.494298 TCAACCAACCTAAAATTTTCTTGAAGC 59.506 33.333 6.72 0.00 0.00 3.86
273 274 6.288294 ACCAACCTAAAATTTTCTTGAAGCC 58.712 36.000 6.72 0.00 0.00 4.35
274 275 5.700832 CCAACCTAAAATTTTCTTGAAGCCC 59.299 40.000 6.72 0.00 0.00 5.19
275 276 5.483685 ACCTAAAATTTTCTTGAAGCCCC 57.516 39.130 6.72 0.00 0.00 5.80
276 277 4.904853 ACCTAAAATTTTCTTGAAGCCCCA 59.095 37.500 6.72 0.00 0.00 4.96
277 278 5.221641 ACCTAAAATTTTCTTGAAGCCCCAC 60.222 40.000 6.72 0.00 0.00 4.61
278 279 4.769345 AAAATTTTCTTGAAGCCCCACA 57.231 36.364 0.00 0.00 0.00 4.17
279 280 4.341366 AAATTTTCTTGAAGCCCCACAG 57.659 40.909 0.00 0.00 0.00 3.66
280 281 2.452600 TTTTCTTGAAGCCCCACAGT 57.547 45.000 0.00 0.00 0.00 3.55
281 282 2.452600 TTTCTTGAAGCCCCACAGTT 57.547 45.000 0.00 0.00 0.00 3.16
282 283 1.691196 TTCTTGAAGCCCCACAGTTG 58.309 50.000 0.00 0.00 0.00 3.16
283 284 0.550914 TCTTGAAGCCCCACAGTTGT 59.449 50.000 0.00 0.00 0.00 3.32
284 285 0.954452 CTTGAAGCCCCACAGTTGTC 59.046 55.000 0.00 0.00 0.00 3.18
285 286 0.550914 TTGAAGCCCCACAGTTGTCT 59.449 50.000 0.00 0.00 0.00 3.41
286 287 0.108585 TGAAGCCCCACAGTTGTCTC 59.891 55.000 0.00 0.00 0.00 3.36
287 288 0.108585 GAAGCCCCACAGTTGTCTCA 59.891 55.000 0.00 0.00 0.00 3.27
288 289 0.109342 AAGCCCCACAGTTGTCTCAG 59.891 55.000 0.00 0.00 0.00 3.35
289 290 0.764369 AGCCCCACAGTTGTCTCAGA 60.764 55.000 0.00 0.00 0.00 3.27
290 291 0.108585 GCCCCACAGTTGTCTCAGAA 59.891 55.000 0.00 0.00 0.00 3.02
291 292 1.879796 GCCCCACAGTTGTCTCAGAAG 60.880 57.143 0.00 0.00 0.00 2.85
292 293 1.694150 CCCCACAGTTGTCTCAGAAGA 59.306 52.381 0.00 0.00 0.00 2.87
293 294 2.304180 CCCCACAGTTGTCTCAGAAGAT 59.696 50.000 0.00 0.00 33.08 2.40
294 295 3.244700 CCCCACAGTTGTCTCAGAAGATT 60.245 47.826 0.00 0.00 33.08 2.40
295 296 3.750130 CCCACAGTTGTCTCAGAAGATTG 59.250 47.826 0.00 0.00 33.08 2.67
296 297 4.384056 CCACAGTTGTCTCAGAAGATTGT 58.616 43.478 0.00 0.00 33.08 2.71
297 298 4.212847 CCACAGTTGTCTCAGAAGATTGTG 59.787 45.833 7.03 7.03 35.06 3.33
298 299 5.052481 CACAGTTGTCTCAGAAGATTGTGA 58.948 41.667 7.90 0.00 36.09 3.58
299 300 5.525012 CACAGTTGTCTCAGAAGATTGTGAA 59.475 40.000 7.90 0.00 36.09 3.18
300 301 6.204301 CACAGTTGTCTCAGAAGATTGTGAAT 59.796 38.462 7.90 0.00 36.09 2.57
301 302 6.769822 ACAGTTGTCTCAGAAGATTGTGAATT 59.230 34.615 0.00 0.00 33.08 2.17
302 303 7.076362 CAGTTGTCTCAGAAGATTGTGAATTG 58.924 38.462 0.00 0.00 33.08 2.32
303 304 6.769822 AGTTGTCTCAGAAGATTGTGAATTGT 59.230 34.615 0.00 0.00 33.08 2.71
304 305 7.284034 AGTTGTCTCAGAAGATTGTGAATTGTT 59.716 33.333 0.00 0.00 33.08 2.83
305 306 7.572523 TGTCTCAGAAGATTGTGAATTGTTT 57.427 32.000 0.00 0.00 33.08 2.83
306 307 8.675705 TGTCTCAGAAGATTGTGAATTGTTTA 57.324 30.769 0.00 0.00 33.08 2.01
307 308 8.777413 TGTCTCAGAAGATTGTGAATTGTTTAG 58.223 33.333 0.00 0.00 33.08 1.85
308 309 8.993121 GTCTCAGAAGATTGTGAATTGTTTAGA 58.007 33.333 0.00 0.00 33.08 2.10
309 310 9.730705 TCTCAGAAGATTGTGAATTGTTTAGAT 57.269 29.630 0.00 0.00 29.49 1.98
310 311 9.985318 CTCAGAAGATTGTGAATTGTTTAGATC 57.015 33.333 0.00 0.00 29.49 2.75
311 312 8.950210 TCAGAAGATTGTGAATTGTTTAGATCC 58.050 33.333 0.00 0.00 0.00 3.36
312 313 8.954350 CAGAAGATTGTGAATTGTTTAGATCCT 58.046 33.333 0.00 0.00 0.00 3.24
319 320 9.567776 TTGTGAATTGTTTAGATCCTAAGAACA 57.432 29.630 0.00 0.00 0.00 3.18
320 321 9.739276 TGTGAATTGTTTAGATCCTAAGAACAT 57.261 29.630 0.00 0.00 31.15 2.71
330 331 7.595819 AGATCCTAAGAACATAGTTCAGAGG 57.404 40.000 17.34 17.34 0.00 3.69
331 332 6.553100 AGATCCTAAGAACATAGTTCAGAGGG 59.447 42.308 20.57 13.32 0.00 4.30
332 333 5.590818 TCCTAAGAACATAGTTCAGAGGGT 58.409 41.667 20.57 0.00 0.00 4.34
333 334 6.023603 TCCTAAGAACATAGTTCAGAGGGTT 58.976 40.000 20.57 7.31 0.00 4.11
334 335 7.186972 TCCTAAGAACATAGTTCAGAGGGTTA 58.813 38.462 20.57 7.87 0.00 2.85
335 336 7.676893 TCCTAAGAACATAGTTCAGAGGGTTAA 59.323 37.037 20.57 7.29 0.00 2.01
336 337 7.764901 CCTAAGAACATAGTTCAGAGGGTTAAC 59.235 40.741 16.35 0.00 0.00 2.01
337 338 6.936968 AGAACATAGTTCAGAGGGTTAACT 57.063 37.500 11.92 0.00 37.27 2.24
338 339 6.702329 AGAACATAGTTCAGAGGGTTAACTG 58.298 40.000 11.92 0.00 35.23 3.16
339 340 4.833390 ACATAGTTCAGAGGGTTAACTGC 58.167 43.478 5.42 0.00 35.23 4.40
340 341 2.861147 AGTTCAGAGGGTTAACTGCC 57.139 50.000 5.42 0.00 32.38 4.85
341 342 1.351350 AGTTCAGAGGGTTAACTGCCC 59.649 52.381 5.42 0.00 46.43 5.36
346 347 2.848032 GGGTTAACTGCCCCCACA 59.152 61.111 5.42 0.00 40.26 4.17
347 348 1.386550 GGGTTAACTGCCCCCACAT 59.613 57.895 5.42 0.00 40.26 3.21
348 349 0.683179 GGGTTAACTGCCCCCACATC 60.683 60.000 5.42 0.00 40.26 3.06
349 350 0.683179 GGTTAACTGCCCCCACATCC 60.683 60.000 5.42 0.00 0.00 3.51
350 351 0.039035 GTTAACTGCCCCCACATCCA 59.961 55.000 0.00 0.00 0.00 3.41
351 352 1.006813 TTAACTGCCCCCACATCCAT 58.993 50.000 0.00 0.00 0.00 3.41
352 353 0.550914 TAACTGCCCCCACATCCATC 59.449 55.000 0.00 0.00 0.00 3.51
353 354 1.508667 AACTGCCCCCACATCCATCA 61.509 55.000 0.00 0.00 0.00 3.07
354 355 1.307309 CTGCCCCCACATCCATCAA 59.693 57.895 0.00 0.00 0.00 2.57
355 356 1.000233 TGCCCCCACATCCATCAAC 60.000 57.895 0.00 0.00 0.00 3.18
356 357 1.758122 GCCCCCACATCCATCAACC 60.758 63.158 0.00 0.00 0.00 3.77
357 358 1.696686 CCCCCACATCCATCAACCA 59.303 57.895 0.00 0.00 0.00 3.67
358 359 0.684153 CCCCCACATCCATCAACCAC 60.684 60.000 0.00 0.00 0.00 4.16
359 360 0.039472 CCCCACATCCATCAACCACA 59.961 55.000 0.00 0.00 0.00 4.17
360 361 1.176527 CCCACATCCATCAACCACAC 58.823 55.000 0.00 0.00 0.00 3.82
361 362 1.176527 CCACATCCATCAACCACACC 58.823 55.000 0.00 0.00 0.00 4.16
362 363 1.176527 CACATCCATCAACCACACCC 58.823 55.000 0.00 0.00 0.00 4.61
363 364 0.776810 ACATCCATCAACCACACCCA 59.223 50.000 0.00 0.00 0.00 4.51
364 365 1.176527 CATCCATCAACCACACCCAC 58.823 55.000 0.00 0.00 0.00 4.61
365 366 0.776810 ATCCATCAACCACACCCACA 59.223 50.000 0.00 0.00 0.00 4.17
366 367 0.553333 TCCATCAACCACACCCACAA 59.447 50.000 0.00 0.00 0.00 3.33
367 368 1.146774 TCCATCAACCACACCCACAAT 59.853 47.619 0.00 0.00 0.00 2.71
368 369 1.969923 CCATCAACCACACCCACAATT 59.030 47.619 0.00 0.00 0.00 2.32
369 370 2.288948 CCATCAACCACACCCACAATTG 60.289 50.000 3.24 3.24 0.00 2.32
370 371 2.443958 TCAACCACACCCACAATTGA 57.556 45.000 13.59 0.00 0.00 2.57
371 372 2.956132 TCAACCACACCCACAATTGAT 58.044 42.857 13.59 0.00 0.00 2.57
372 373 2.890311 TCAACCACACCCACAATTGATC 59.110 45.455 13.59 0.00 0.00 2.92
373 374 1.923356 ACCACACCCACAATTGATCC 58.077 50.000 13.59 0.00 0.00 3.36
374 375 1.146774 ACCACACCCACAATTGATCCA 59.853 47.619 13.59 0.00 0.00 3.41
375 376 2.225343 ACCACACCCACAATTGATCCAT 60.225 45.455 13.59 0.00 0.00 3.41
376 377 2.428171 CCACACCCACAATTGATCCATC 59.572 50.000 13.59 0.00 0.00 3.51
377 378 3.090790 CACACCCACAATTGATCCATCA 58.909 45.455 13.59 0.00 34.44 3.07
390 391 5.848286 TGATCCATCAAATATAGTGGGCT 57.152 39.130 0.00 0.00 33.08 5.19
391 392 5.563592 TGATCCATCAAATATAGTGGGCTG 58.436 41.667 0.00 0.00 33.08 4.85
392 393 5.073554 TGATCCATCAAATATAGTGGGCTGT 59.926 40.000 0.00 0.00 33.08 4.40
393 394 5.387113 TCCATCAAATATAGTGGGCTGTT 57.613 39.130 0.00 0.00 32.58 3.16
394 395 5.132502 TCCATCAAATATAGTGGGCTGTTG 58.867 41.667 0.00 0.00 32.58 3.33
395 396 5.104151 TCCATCAAATATAGTGGGCTGTTGA 60.104 40.000 0.00 0.00 32.58 3.18
396 397 5.593909 CCATCAAATATAGTGGGCTGTTGAA 59.406 40.000 0.00 0.00 0.00 2.69
397 398 6.266103 CCATCAAATATAGTGGGCTGTTGAAT 59.734 38.462 0.00 0.00 0.00 2.57
398 399 6.942532 TCAAATATAGTGGGCTGTTGAATC 57.057 37.500 0.00 0.00 0.00 2.52
399 400 6.662755 TCAAATATAGTGGGCTGTTGAATCT 58.337 36.000 0.00 0.00 0.00 2.40
400 401 6.767902 TCAAATATAGTGGGCTGTTGAATCTC 59.232 38.462 0.00 0.00 0.00 2.75
401 402 6.506538 AATATAGTGGGCTGTTGAATCTCT 57.493 37.500 0.00 0.00 0.00 3.10
402 403 4.851639 ATAGTGGGCTGTTGAATCTCTT 57.148 40.909 0.00 0.00 0.00 2.85
403 404 3.064900 AGTGGGCTGTTGAATCTCTTC 57.935 47.619 0.00 0.00 0.00 2.87
404 405 2.087646 GTGGGCTGTTGAATCTCTTCC 58.912 52.381 0.00 0.00 0.00 3.46
405 406 1.988107 TGGGCTGTTGAATCTCTTCCT 59.012 47.619 0.00 0.00 0.00 3.36
406 407 2.376518 TGGGCTGTTGAATCTCTTCCTT 59.623 45.455 0.00 0.00 0.00 3.36
407 408 3.013219 GGGCTGTTGAATCTCTTCCTTC 58.987 50.000 0.00 0.00 0.00 3.46
408 409 3.013219 GGCTGTTGAATCTCTTCCTTCC 58.987 50.000 0.00 0.00 0.00 3.46
409 410 3.308046 GGCTGTTGAATCTCTTCCTTCCT 60.308 47.826 0.00 0.00 0.00 3.36
410 411 3.938334 GCTGTTGAATCTCTTCCTTCCTC 59.062 47.826 0.00 0.00 0.00 3.71
411 412 4.564406 GCTGTTGAATCTCTTCCTTCCTCA 60.564 45.833 0.00 0.00 0.00 3.86
412 413 5.157940 TGTTGAATCTCTTCCTTCCTCAG 57.842 43.478 0.00 0.00 0.00 3.35
413 414 3.902881 TGAATCTCTTCCTTCCTCAGC 57.097 47.619 0.00 0.00 0.00 4.26
414 415 3.448934 TGAATCTCTTCCTTCCTCAGCT 58.551 45.455 0.00 0.00 0.00 4.24
415 416 3.450457 TGAATCTCTTCCTTCCTCAGCTC 59.550 47.826 0.00 0.00 0.00 4.09
416 417 2.917713 TCTCTTCCTTCCTCAGCTCT 57.082 50.000 0.00 0.00 0.00 4.09
417 418 4.534647 ATCTCTTCCTTCCTCAGCTCTA 57.465 45.455 0.00 0.00 0.00 2.43
418 419 3.897239 TCTCTTCCTTCCTCAGCTCTAG 58.103 50.000 0.00 0.00 0.00 2.43
419 420 3.268334 TCTCTTCCTTCCTCAGCTCTAGT 59.732 47.826 0.00 0.00 0.00 2.57
420 421 4.475381 TCTCTTCCTTCCTCAGCTCTAGTA 59.525 45.833 0.00 0.00 0.00 1.82
421 422 5.133660 TCTCTTCCTTCCTCAGCTCTAGTAT 59.866 44.000 0.00 0.00 0.00 2.12
422 423 5.381757 TCTTCCTTCCTCAGCTCTAGTATC 58.618 45.833 0.00 0.00 0.00 2.24
423 424 5.133660 TCTTCCTTCCTCAGCTCTAGTATCT 59.866 44.000 0.00 0.00 0.00 1.98
424 425 5.396057 TCCTTCCTCAGCTCTAGTATCTT 57.604 43.478 0.00 0.00 0.00 2.40
425 426 5.772004 TCCTTCCTCAGCTCTAGTATCTTT 58.228 41.667 0.00 0.00 0.00 2.52
426 427 5.830991 TCCTTCCTCAGCTCTAGTATCTTTC 59.169 44.000 0.00 0.00 0.00 2.62
427 428 5.833131 CCTTCCTCAGCTCTAGTATCTTTCT 59.167 44.000 0.00 0.00 0.00 2.52
428 429 6.323739 CCTTCCTCAGCTCTAGTATCTTTCTT 59.676 42.308 0.00 0.00 0.00 2.52
429 430 7.147742 CCTTCCTCAGCTCTAGTATCTTTCTTT 60.148 40.741 0.00 0.00 0.00 2.52
430 431 7.726033 TCCTCAGCTCTAGTATCTTTCTTTT 57.274 36.000 0.00 0.00 0.00 2.27
431 432 8.140112 TCCTCAGCTCTAGTATCTTTCTTTTT 57.860 34.615 0.00 0.00 0.00 1.94
450 451 2.137810 TTTTTGCGGGGGATCCTAAG 57.862 50.000 12.58 4.14 0.00 2.18
451 452 1.291109 TTTTGCGGGGGATCCTAAGA 58.709 50.000 12.58 0.00 0.00 2.10
452 453 1.291109 TTTGCGGGGGATCCTAAGAA 58.709 50.000 12.58 0.00 0.00 2.52
453 454 1.518367 TTGCGGGGGATCCTAAGAAT 58.482 50.000 12.58 0.00 0.00 2.40
454 455 1.518367 TGCGGGGGATCCTAAGAATT 58.482 50.000 12.58 0.00 0.00 2.17
455 456 1.850345 TGCGGGGGATCCTAAGAATTT 59.150 47.619 12.58 0.00 0.00 1.82
456 457 2.158667 TGCGGGGGATCCTAAGAATTTC 60.159 50.000 12.58 0.00 0.00 2.17
457 458 2.158667 GCGGGGGATCCTAAGAATTTCA 60.159 50.000 12.58 0.00 0.00 2.69
458 459 3.744660 CGGGGGATCCTAAGAATTTCAG 58.255 50.000 12.58 0.00 0.00 3.02
459 460 3.391296 CGGGGGATCCTAAGAATTTCAGA 59.609 47.826 12.58 0.00 0.00 3.27
460 461 4.503991 CGGGGGATCCTAAGAATTTCAGAG 60.504 50.000 12.58 0.00 0.00 3.35
461 462 4.202514 GGGGGATCCTAAGAATTTCAGAGG 60.203 50.000 12.58 9.34 0.00 3.69
462 463 4.202514 GGGGATCCTAAGAATTTCAGAGGG 60.203 50.000 12.58 4.77 0.00 4.30
463 464 4.413851 GGGATCCTAAGAATTTCAGAGGGT 59.586 45.833 12.58 8.75 0.00 4.34
464 465 5.103898 GGGATCCTAAGAATTTCAGAGGGTT 60.104 44.000 12.58 5.33 0.00 4.11
465 466 5.825151 GGATCCTAAGAATTTCAGAGGGTTG 59.175 44.000 3.84 0.00 0.00 3.77
466 467 5.843019 TCCTAAGAATTTCAGAGGGTTGT 57.157 39.130 13.67 0.00 0.00 3.32
467 468 5.560724 TCCTAAGAATTTCAGAGGGTTGTG 58.439 41.667 13.67 0.00 0.00 3.33
468 469 5.309543 TCCTAAGAATTTCAGAGGGTTGTGA 59.690 40.000 13.67 0.00 0.00 3.58
469 470 6.003950 CCTAAGAATTTCAGAGGGTTGTGAA 58.996 40.000 8.17 0.00 35.06 3.18
470 471 6.660949 CCTAAGAATTTCAGAGGGTTGTGAAT 59.339 38.462 8.17 0.00 36.59 2.57
471 472 6.983906 AAGAATTTCAGAGGGTTGTGAATT 57.016 33.333 0.00 0.00 36.59 2.17
472 473 9.231297 CTAAGAATTTCAGAGGGTTGTGAATTA 57.769 33.333 0.00 0.00 36.59 1.40
473 474 8.655935 AAGAATTTCAGAGGGTTGTGAATTAT 57.344 30.769 0.00 0.00 36.59 1.28
474 475 9.753674 AAGAATTTCAGAGGGTTGTGAATTATA 57.246 29.630 0.00 0.00 36.59 0.98
475 476 9.401058 AGAATTTCAGAGGGTTGTGAATTATAG 57.599 33.333 0.00 0.00 36.59 1.31
476 477 9.178758 GAATTTCAGAGGGTTGTGAATTATAGT 57.821 33.333 0.00 0.00 36.59 2.12
477 478 9.533831 AATTTCAGAGGGTTGTGAATTATAGTT 57.466 29.630 0.00 0.00 36.59 2.24
478 479 8.561738 TTTCAGAGGGTTGTGAATTATAGTTC 57.438 34.615 1.17 1.17 36.59 3.01
479 480 6.338146 TCAGAGGGTTGTGAATTATAGTTCG 58.662 40.000 3.81 0.00 0.00 3.95
480 481 5.006746 CAGAGGGTTGTGAATTATAGTTCGC 59.993 44.000 13.07 13.07 38.70 4.70
481 482 5.099042 AGGGTTGTGAATTATAGTTCGCT 57.901 39.130 18.71 1.52 38.93 4.93
482 483 5.497474 AGGGTTGTGAATTATAGTTCGCTT 58.503 37.500 18.71 2.00 38.93 4.68
483 484 5.944007 AGGGTTGTGAATTATAGTTCGCTTT 59.056 36.000 18.71 2.27 38.93 3.51
484 485 6.027749 GGGTTGTGAATTATAGTTCGCTTTG 58.972 40.000 18.71 0.00 38.93 2.77
485 486 6.349033 GGGTTGTGAATTATAGTTCGCTTTGT 60.349 38.462 18.71 0.00 38.93 2.83
486 487 7.148373 GGGTTGTGAATTATAGTTCGCTTTGTA 60.148 37.037 18.71 0.21 38.93 2.41
596 597 2.208132 ATCATAACCCAACACGGCAA 57.792 45.000 0.00 0.00 0.00 4.52
636 637 4.317980 GCATATTGCACAACACAACACAAC 60.318 41.667 0.00 0.00 44.26 3.32
637 638 2.800881 TTGCACAACACAACACAACA 57.199 40.000 0.00 0.00 0.00 3.33
638 639 2.057503 TGCACAACACAACACAACAC 57.942 45.000 0.00 0.00 0.00 3.32
639 640 1.338020 TGCACAACACAACACAACACA 59.662 42.857 0.00 0.00 0.00 3.72
640 641 2.223805 TGCACAACACAACACAACACAA 60.224 40.909 0.00 0.00 0.00 3.33
652 653 5.070770 ACACAACACAAACACATCACATT 57.929 34.783 0.00 0.00 0.00 2.71
663 664 9.013229 ACAAACACATCACATTACATGAGTTAT 57.987 29.630 0.00 0.00 34.09 1.89
672 673 9.088987 TCACATTACATGAGTTATCTATAGCCA 57.911 33.333 0.00 0.00 0.00 4.75
673 674 9.363763 CACATTACATGAGTTATCTATAGCCAG 57.636 37.037 0.00 0.00 0.00 4.85
674 675 8.535335 ACATTACATGAGTTATCTATAGCCAGG 58.465 37.037 0.00 0.00 0.00 4.45
675 676 5.413309 ACATGAGTTATCTATAGCCAGGC 57.587 43.478 1.84 1.84 0.00 4.85
676 677 4.223923 ACATGAGTTATCTATAGCCAGGCC 59.776 45.833 8.22 0.00 0.00 5.19
677 678 4.133526 TGAGTTATCTATAGCCAGGCCT 57.866 45.455 8.22 0.00 0.00 5.19
688 689 1.871126 GCCAGGCCTCTGCTGTTTTC 61.871 60.000 15.16 0.00 39.61 2.29
757 764 3.499737 CACGGGCAATCCACGCTC 61.500 66.667 0.00 0.00 34.36 5.03
759 766 4.776322 CGGGCAATCCACGCTCCA 62.776 66.667 0.00 0.00 34.36 3.86
763 770 1.162800 GGCAATCCACGCTCCAGATC 61.163 60.000 0.00 0.00 0.00 2.75
1170 1185 1.298563 GTCCACAACGACGACGACA 60.299 57.895 15.32 0.00 42.66 4.35
1316 1340 4.094684 CGGAAGAACGCTGGCTAG 57.905 61.111 0.00 0.00 0.00 3.42
1401 1427 2.008242 AGCCCATTAGATCGAGCTCT 57.992 50.000 6.40 0.00 0.00 4.09
1485 1517 6.716628 TGATTTTCACTACTTCTTTGGAGCAT 59.283 34.615 0.00 0.00 0.00 3.79
1545 1586 4.737177 GGGAGCTTGCTGCAGCCT 62.737 66.667 34.64 24.49 45.94 4.58
1546 1587 3.441290 GGAGCTTGCTGCAGCCTG 61.441 66.667 34.64 26.33 45.94 4.85
1581 1626 3.512516 GGAGCGGTCAATGGCTGC 61.513 66.667 17.59 11.22 40.16 5.25
1585 1630 3.136123 CGGTCAATGGCTGCCCTG 61.136 66.667 17.53 13.62 0.00 4.45
1586 1631 2.036256 GGTCAATGGCTGCCCTGT 59.964 61.111 17.53 0.00 0.00 4.00
1730 1775 6.264292 TCACTAGCCTTTTTGTTTGCTTATGA 59.736 34.615 0.00 0.00 35.34 2.15
1731 1776 6.363357 CACTAGCCTTTTTGTTTGCTTATGAC 59.637 38.462 0.00 0.00 35.34 3.06
1738 1783 6.561737 TTTTGTTTGCTTATGACCGTGATA 57.438 33.333 0.00 0.00 0.00 2.15
1739 1784 6.751514 TTTGTTTGCTTATGACCGTGATAT 57.248 33.333 0.00 0.00 0.00 1.63
1740 1785 7.851387 TTTGTTTGCTTATGACCGTGATATA 57.149 32.000 0.00 0.00 0.00 0.86
1827 1908 8.277918 AGATTAAAAACTGAGATAGGCAGGAAT 58.722 33.333 0.00 0.00 37.69 3.01
1845 1926 0.109723 ATGGTTTGGCCGTGTAGTGT 59.890 50.000 0.00 0.00 41.21 3.55
1863 1944 1.133513 TGTGGCTGGAAGGTCAAACAT 60.134 47.619 0.00 0.00 0.00 2.71
1924 2005 8.629158 TGCAAATTTAAGCCATAATCTACGATT 58.371 29.630 0.00 0.00 0.00 3.34
1947 2028 3.819368 TCAGCAGGAAAAACATGTCAGA 58.181 40.909 0.00 0.00 32.48 3.27
1977 2058 0.255604 TGGATCATGCCATCACGGTT 59.744 50.000 0.00 0.00 36.97 4.44
1988 2069 2.679837 CCATCACGGTTCTGATTTCCAG 59.320 50.000 0.00 0.00 44.27 3.86
1989 2070 2.472695 TCACGGTTCTGATTTCCAGG 57.527 50.000 0.00 0.00 43.12 4.45
2054 2141 3.545366 AACCGAGCTAATCTCCTTTCC 57.455 47.619 0.00 0.00 38.62 3.13
2060 2147 4.991687 CGAGCTAATCTCCTTTCCATTACC 59.008 45.833 0.00 0.00 38.62 2.85
2071 2158 7.610305 TCTCCTTTCCATTACCTTTGACATAAC 59.390 37.037 0.00 0.00 0.00 1.89
2072 2159 6.373216 TCCTTTCCATTACCTTTGACATAACG 59.627 38.462 0.00 0.00 0.00 3.18
2079 2166 6.548441 TTACCTTTGACATAACGGAAACAG 57.452 37.500 0.00 0.00 0.00 3.16
2091 2178 3.551846 ACGGAAACAGAACAGTTCCAAT 58.448 40.909 9.85 0.00 0.00 3.16
2092 2179 4.710324 ACGGAAACAGAACAGTTCCAATA 58.290 39.130 9.85 0.00 0.00 1.90
2099 2186 9.612620 GAAACAGAACAGTTCCAATATACAAAG 57.387 33.333 9.85 0.00 0.00 2.77
2101 2188 9.520515 AACAGAACAGTTCCAATATACAAAGAT 57.479 29.630 9.85 0.00 0.00 2.40
2107 2194 9.167311 ACAGTTCCAATATACAAAGATTCAGAC 57.833 33.333 0.00 0.00 0.00 3.51
2145 2232 4.392921 AGCGAGTTCATGCACTACTATT 57.607 40.909 0.00 0.00 0.00 1.73
2150 2237 7.169982 AGCGAGTTCATGCACTACTATTAAATC 59.830 37.037 0.00 0.00 0.00 2.17
2154 2241 7.224753 AGTTCATGCACTACTATTAAATCCACG 59.775 37.037 0.00 0.00 0.00 4.94
2156 2243 4.124238 TGCACTACTATTAAATCCACGGC 58.876 43.478 0.00 0.00 0.00 5.68
2161 2248 3.945346 ACTATTAAATCCACGGCACACA 58.055 40.909 0.00 0.00 0.00 3.72
2170 2257 1.896660 ACGGCACACACCCACATTC 60.897 57.895 0.00 0.00 0.00 2.67
2175 2262 1.153066 ACACACCCACATTCGCACA 60.153 52.632 0.00 0.00 0.00 4.57
2186 2273 2.083774 CATTCGCACACTTACCATGGT 58.916 47.619 23.55 23.55 0.00 3.55
2187 2274 1.518325 TTCGCACACTTACCATGGTG 58.482 50.000 28.17 14.23 39.13 4.17
2188 2275 0.394938 TCGCACACTTACCATGGTGT 59.605 50.000 28.17 14.95 45.96 4.16
2197 2284 5.067273 CACTTACCATGGTGTGAAAACCTA 58.933 41.667 28.17 0.00 41.16 3.08
2206 2293 5.133941 TGGTGTGAAAACCTATTAGCACAA 58.866 37.500 0.00 0.00 41.16 3.33
2221 2308 6.959671 TTAGCACAAAAACAAGTCCAAAAG 57.040 33.333 0.00 0.00 0.00 2.27
2232 2319 7.832503 AACAAGTCCAAAAGTTTCTCATTTG 57.167 32.000 0.00 0.00 35.37 2.32
2244 2331 6.564328 AGTTTCTCATTTGAACTGAAACCAC 58.436 36.000 14.99 0.00 44.13 4.16
2245 2332 6.152661 AGTTTCTCATTTGAACTGAAACCACA 59.847 34.615 14.99 0.00 44.13 4.17
2247 2334 5.890334 TCTCATTTGAACTGAAACCACAAC 58.110 37.500 0.00 0.00 0.00 3.32
2249 2336 5.406649 TCATTTGAACTGAAACCACAACAC 58.593 37.500 0.00 0.00 0.00 3.32
2258 2345 7.164230 ACTGAAACCACAACACTTATTTTGA 57.836 32.000 0.00 0.00 0.00 2.69
2259 2346 7.607250 ACTGAAACCACAACACTTATTTTGAA 58.393 30.769 0.00 0.00 0.00 2.69
2260 2347 7.544217 ACTGAAACCACAACACTTATTTTGAAC 59.456 33.333 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.942850 CATATGTATACTATTGATGTTGGTGGA 57.057 33.333 4.17 0.00 0.00 4.02
2 3 8.668353 GCATATGTATACTATTGATGTTGGTGG 58.332 37.037 4.29 0.00 0.00 4.61
3 4 9.218440 TGCATATGTATACTATTGATGTTGGTG 57.782 33.333 4.29 0.00 0.00 4.17
4 5 9.791801 TTGCATATGTATACTATTGATGTTGGT 57.208 29.630 4.29 0.00 0.00 3.67
9 10 9.712359 GCATGTTGCATATGTATACTATTGATG 57.288 33.333 4.29 2.35 44.26 3.07
27 28 2.223688 TGTGTTGGTTGTAGCATGTTGC 60.224 45.455 0.00 0.00 45.46 4.17
28 29 3.706802 TGTGTTGGTTGTAGCATGTTG 57.293 42.857 0.00 0.00 0.00 3.33
29 30 7.880160 ATATATGTGTTGGTTGTAGCATGTT 57.120 32.000 0.00 0.00 0.00 2.71
30 31 8.210946 ACTATATATGTGTTGGTTGTAGCATGT 58.789 33.333 0.00 0.00 0.00 3.21
31 32 8.607441 ACTATATATGTGTTGGTTGTAGCATG 57.393 34.615 0.00 0.00 0.00 4.06
32 33 9.273016 GAACTATATATGTGTTGGTTGTAGCAT 57.727 33.333 9.64 0.00 0.00 3.79
33 34 8.482943 AGAACTATATATGTGTTGGTTGTAGCA 58.517 33.333 9.64 0.00 0.00 3.49
34 35 8.888579 AGAACTATATATGTGTTGGTTGTAGC 57.111 34.615 9.64 0.00 0.00 3.58
68 69 9.941325 GTCCTCTTCAATGATCATATCTATGTT 57.059 33.333 9.04 0.00 35.26 2.71
69 70 9.097946 TGTCCTCTTCAATGATCATATCTATGT 57.902 33.333 9.04 0.00 35.26 2.29
70 71 9.939802 TTGTCCTCTTCAATGATCATATCTATG 57.060 33.333 9.04 3.20 35.04 2.23
72 73 9.993454 CTTTGTCCTCTTCAATGATCATATCTA 57.007 33.333 9.04 0.00 0.00 1.98
73 74 8.712103 TCTTTGTCCTCTTCAATGATCATATCT 58.288 33.333 9.04 0.00 0.00 1.98
74 75 8.899427 TCTTTGTCCTCTTCAATGATCATATC 57.101 34.615 9.04 0.00 0.00 1.63
75 76 9.690913 TTTCTTTGTCCTCTTCAATGATCATAT 57.309 29.630 9.04 0.00 32.12 1.78
76 77 9.690913 ATTTCTTTGTCCTCTTCAATGATCATA 57.309 29.630 9.04 0.00 32.12 2.15
77 78 8.591114 ATTTCTTTGTCCTCTTCAATGATCAT 57.409 30.769 1.18 1.18 32.12 2.45
78 79 9.519191 TTATTTCTTTGTCCTCTTCAATGATCA 57.481 29.630 0.00 0.00 32.12 2.92
108 109 9.632807 CGTGGAAGGTTATAATTTTTCATTTGA 57.367 29.630 0.00 0.00 0.00 2.69
109 110 9.418045 ACGTGGAAGGTTATAATTTTTCATTTG 57.582 29.630 0.00 0.00 0.00 2.32
110 111 9.990360 AACGTGGAAGGTTATAATTTTTCATTT 57.010 25.926 0.00 0.00 44.03 2.32
111 112 9.634163 GAACGTGGAAGGTTATAATTTTTCATT 57.366 29.630 0.00 0.00 46.10 2.57
112 113 8.248253 GGAACGTGGAAGGTTATAATTTTTCAT 58.752 33.333 0.00 0.00 46.10 2.57
113 114 7.595604 GGAACGTGGAAGGTTATAATTTTTCA 58.404 34.615 0.00 0.00 46.10 2.69
134 135 1.480954 TGAAGGATGGCTAGTCGGAAC 59.519 52.381 0.00 0.00 0.00 3.62
135 136 1.860641 TGAAGGATGGCTAGTCGGAA 58.139 50.000 0.00 0.00 0.00 4.30
136 137 1.688735 CATGAAGGATGGCTAGTCGGA 59.311 52.381 0.00 0.00 0.00 4.55
137 138 1.414181 ACATGAAGGATGGCTAGTCGG 59.586 52.381 0.00 0.00 36.23 4.79
138 139 2.898729 ACATGAAGGATGGCTAGTCG 57.101 50.000 0.00 0.00 36.23 4.18
139 140 3.323403 AGCTACATGAAGGATGGCTAGTC 59.677 47.826 0.00 0.00 36.23 2.59
140 141 3.312890 AGCTACATGAAGGATGGCTAGT 58.687 45.455 0.00 0.00 36.23 2.57
141 142 3.577848 AGAGCTACATGAAGGATGGCTAG 59.422 47.826 0.00 0.00 36.23 3.42
142 143 3.323115 CAGAGCTACATGAAGGATGGCTA 59.677 47.826 0.00 0.00 36.23 3.93
143 144 2.104451 CAGAGCTACATGAAGGATGGCT 59.896 50.000 0.00 0.00 36.23 4.75
144 145 2.158842 ACAGAGCTACATGAAGGATGGC 60.159 50.000 0.00 0.00 36.23 4.40
145 146 3.834489 ACAGAGCTACATGAAGGATGG 57.166 47.619 0.00 0.00 36.23 3.51
160 161 4.272991 GCCATGAGAGAATTGCTAACAGAG 59.727 45.833 0.00 0.00 0.00 3.35
161 162 4.194640 GCCATGAGAGAATTGCTAACAGA 58.805 43.478 0.00 0.00 0.00 3.41
162 163 3.314635 GGCCATGAGAGAATTGCTAACAG 59.685 47.826 0.00 0.00 0.00 3.16
163 164 3.282021 GGCCATGAGAGAATTGCTAACA 58.718 45.455 0.00 0.00 0.00 2.41
164 165 2.620585 GGGCCATGAGAGAATTGCTAAC 59.379 50.000 4.39 0.00 0.00 2.34
165 166 2.241941 TGGGCCATGAGAGAATTGCTAA 59.758 45.455 0.00 0.00 0.00 3.09
166 167 1.845791 TGGGCCATGAGAGAATTGCTA 59.154 47.619 0.00 0.00 0.00 3.49
167 168 0.627451 TGGGCCATGAGAGAATTGCT 59.373 50.000 0.00 0.00 0.00 3.91
168 169 0.743097 GTGGGCCATGAGAGAATTGC 59.257 55.000 10.70 0.00 0.00 3.56
169 170 2.295885 GAGTGGGCCATGAGAGAATTG 58.704 52.381 10.70 0.00 0.00 2.32
170 171 1.213926 GGAGTGGGCCATGAGAGAATT 59.786 52.381 10.70 0.00 0.00 2.17
171 172 0.842635 GGAGTGGGCCATGAGAGAAT 59.157 55.000 10.70 0.00 0.00 2.40
172 173 0.252881 AGGAGTGGGCCATGAGAGAA 60.253 55.000 10.70 0.00 0.00 2.87
173 174 0.252881 AAGGAGTGGGCCATGAGAGA 60.253 55.000 10.70 0.00 0.00 3.10
174 175 0.179936 GAAGGAGTGGGCCATGAGAG 59.820 60.000 10.70 0.00 0.00 3.20
175 176 1.274703 GGAAGGAGTGGGCCATGAGA 61.275 60.000 10.70 0.00 0.00 3.27
176 177 1.225704 GGAAGGAGTGGGCCATGAG 59.774 63.158 10.70 0.00 0.00 2.90
177 178 2.308722 GGGAAGGAGTGGGCCATGA 61.309 63.158 10.70 0.00 0.00 3.07
178 179 2.276740 GGGAAGGAGTGGGCCATG 59.723 66.667 10.70 0.00 0.00 3.66
179 180 3.411517 CGGGAAGGAGTGGGCCAT 61.412 66.667 10.70 0.00 0.00 4.40
180 181 4.649705 TCGGGAAGGAGTGGGCCA 62.650 66.667 0.00 0.00 0.00 5.36
181 182 3.787001 CTCGGGAAGGAGTGGGCC 61.787 72.222 0.00 0.00 0.00 5.80
182 183 4.475135 GCTCGGGAAGGAGTGGGC 62.475 72.222 0.00 0.00 36.41 5.36
183 184 1.381327 TAGCTCGGGAAGGAGTGGG 60.381 63.158 0.00 0.00 36.41 4.61
184 185 0.684805 ACTAGCTCGGGAAGGAGTGG 60.685 60.000 0.00 0.00 36.41 4.00
185 186 0.741915 GACTAGCTCGGGAAGGAGTG 59.258 60.000 0.00 0.00 36.41 3.51
186 187 0.626916 AGACTAGCTCGGGAAGGAGT 59.373 55.000 0.00 0.00 36.41 3.85
187 188 1.407258 CAAGACTAGCTCGGGAAGGAG 59.593 57.143 0.00 0.00 37.11 3.69
188 189 1.005569 TCAAGACTAGCTCGGGAAGGA 59.994 52.381 0.00 0.00 0.00 3.36
189 190 1.475403 TCAAGACTAGCTCGGGAAGG 58.525 55.000 0.00 0.00 0.00 3.46
190 191 2.494073 AGTTCAAGACTAGCTCGGGAAG 59.506 50.000 0.00 0.00 36.65 3.46
191 192 2.492484 GAGTTCAAGACTAGCTCGGGAA 59.508 50.000 0.00 0.00 39.19 3.97
192 193 2.093106 GAGTTCAAGACTAGCTCGGGA 58.907 52.381 0.00 0.00 39.19 5.14
193 194 1.819288 TGAGTTCAAGACTAGCTCGGG 59.181 52.381 0.00 0.00 39.19 5.14
194 195 2.416162 GGTGAGTTCAAGACTAGCTCGG 60.416 54.545 0.00 0.00 39.19 4.63
195 196 2.416162 GGGTGAGTTCAAGACTAGCTCG 60.416 54.545 0.00 0.00 39.19 5.03
196 197 2.829120 AGGGTGAGTTCAAGACTAGCTC 59.171 50.000 0.00 0.00 39.19 4.09
197 198 2.896039 AGGGTGAGTTCAAGACTAGCT 58.104 47.619 0.00 0.00 39.19 3.32
198 199 3.330267 CAAGGGTGAGTTCAAGACTAGC 58.670 50.000 0.00 0.00 39.19 3.42
199 200 3.244215 TGCAAGGGTGAGTTCAAGACTAG 60.244 47.826 0.00 0.00 39.19 2.57
200 201 2.703536 TGCAAGGGTGAGTTCAAGACTA 59.296 45.455 0.00 0.00 39.19 2.59
201 202 1.490490 TGCAAGGGTGAGTTCAAGACT 59.510 47.619 0.00 0.00 42.70 3.24
202 203 1.876156 CTGCAAGGGTGAGTTCAAGAC 59.124 52.381 0.00 0.00 0.00 3.01
203 204 2.260844 CTGCAAGGGTGAGTTCAAGA 57.739 50.000 0.00 0.00 0.00 3.02
216 217 1.273327 GGGAATTGACCAACCTGCAAG 59.727 52.381 0.00 0.00 0.00 4.01
217 218 1.337118 GGGAATTGACCAACCTGCAA 58.663 50.000 0.00 0.00 0.00 4.08
218 219 0.187117 TGGGAATTGACCAACCTGCA 59.813 50.000 0.00 0.00 34.44 4.41
219 220 1.560505 ATGGGAATTGACCAACCTGC 58.439 50.000 2.81 0.00 42.17 4.85
220 221 2.682856 CGTATGGGAATTGACCAACCTG 59.317 50.000 2.81 0.00 42.17 4.00
221 222 2.574369 TCGTATGGGAATTGACCAACCT 59.426 45.455 2.81 0.00 42.17 3.50
222 223 2.993937 TCGTATGGGAATTGACCAACC 58.006 47.619 2.81 0.00 42.17 3.77
223 224 4.451900 AGATCGTATGGGAATTGACCAAC 58.548 43.478 2.81 3.06 42.17 3.77
224 225 4.771114 AGATCGTATGGGAATTGACCAA 57.229 40.909 2.81 0.00 42.17 3.67
225 226 4.163268 TGAAGATCGTATGGGAATTGACCA 59.837 41.667 1.24 1.24 43.22 4.02
226 227 4.703897 TGAAGATCGTATGGGAATTGACC 58.296 43.478 0.00 0.00 0.00 4.02
227 228 5.007724 GGTTGAAGATCGTATGGGAATTGAC 59.992 44.000 0.00 0.00 0.00 3.18
228 229 5.123227 GGTTGAAGATCGTATGGGAATTGA 58.877 41.667 0.00 0.00 0.00 2.57
229 230 4.881273 TGGTTGAAGATCGTATGGGAATTG 59.119 41.667 0.00 0.00 0.00 2.32
230 231 5.110814 TGGTTGAAGATCGTATGGGAATT 57.889 39.130 0.00 0.00 0.00 2.17
231 232 4.771114 TGGTTGAAGATCGTATGGGAAT 57.229 40.909 0.00 0.00 0.00 3.01
232 233 4.258543 GTTGGTTGAAGATCGTATGGGAA 58.741 43.478 0.00 0.00 0.00 3.97
233 234 3.370103 GGTTGGTTGAAGATCGTATGGGA 60.370 47.826 0.00 0.00 0.00 4.37
234 235 2.943033 GGTTGGTTGAAGATCGTATGGG 59.057 50.000 0.00 0.00 0.00 4.00
235 236 3.873910 AGGTTGGTTGAAGATCGTATGG 58.126 45.455 0.00 0.00 0.00 2.74
236 237 6.978343 TTTAGGTTGGTTGAAGATCGTATG 57.022 37.500 0.00 0.00 0.00 2.39
237 238 8.575649 AATTTTAGGTTGGTTGAAGATCGTAT 57.424 30.769 0.00 0.00 0.00 3.06
238 239 7.989416 AATTTTAGGTTGGTTGAAGATCGTA 57.011 32.000 0.00 0.00 0.00 3.43
239 240 6.894339 AATTTTAGGTTGGTTGAAGATCGT 57.106 33.333 0.00 0.00 0.00 3.73
240 241 8.082242 AGAAAATTTTAGGTTGGTTGAAGATCG 58.918 33.333 2.75 0.00 0.00 3.69
241 242 9.764363 AAGAAAATTTTAGGTTGGTTGAAGATC 57.236 29.630 2.75 0.00 0.00 2.75
242 243 9.546428 CAAGAAAATTTTAGGTTGGTTGAAGAT 57.454 29.630 2.75 0.00 0.00 2.40
243 244 8.754080 TCAAGAAAATTTTAGGTTGGTTGAAGA 58.246 29.630 2.75 0.00 0.00 2.87
244 245 8.940768 TCAAGAAAATTTTAGGTTGGTTGAAG 57.059 30.769 2.75 0.00 0.00 3.02
245 246 9.377312 CTTCAAGAAAATTTTAGGTTGGTTGAA 57.623 29.630 2.75 9.24 0.00 2.69
246 247 7.494298 GCTTCAAGAAAATTTTAGGTTGGTTGA 59.506 33.333 2.75 2.76 0.00 3.18
247 248 7.254761 GGCTTCAAGAAAATTTTAGGTTGGTTG 60.255 37.037 2.75 0.64 0.00 3.77
248 249 6.765989 GGCTTCAAGAAAATTTTAGGTTGGTT 59.234 34.615 2.75 0.00 0.00 3.67
249 250 6.288294 GGCTTCAAGAAAATTTTAGGTTGGT 58.712 36.000 2.75 0.00 0.00 3.67
250 251 5.700832 GGGCTTCAAGAAAATTTTAGGTTGG 59.299 40.000 2.75 0.00 0.00 3.77
251 252 5.700832 GGGGCTTCAAGAAAATTTTAGGTTG 59.299 40.000 2.75 8.32 0.00 3.77
252 253 5.368230 TGGGGCTTCAAGAAAATTTTAGGTT 59.632 36.000 2.75 0.00 0.00 3.50
253 254 4.904853 TGGGGCTTCAAGAAAATTTTAGGT 59.095 37.500 2.75 0.00 0.00 3.08
254 255 5.221621 TGTGGGGCTTCAAGAAAATTTTAGG 60.222 40.000 2.75 0.00 0.00 2.69
255 256 5.852827 TGTGGGGCTTCAAGAAAATTTTAG 58.147 37.500 2.75 0.00 0.00 1.85
256 257 5.365314 ACTGTGGGGCTTCAAGAAAATTTTA 59.635 36.000 2.75 0.00 0.00 1.52
257 258 4.164030 ACTGTGGGGCTTCAAGAAAATTTT 59.836 37.500 2.28 2.28 0.00 1.82
258 259 3.711190 ACTGTGGGGCTTCAAGAAAATTT 59.289 39.130 0.00 0.00 0.00 1.82
259 260 3.308401 ACTGTGGGGCTTCAAGAAAATT 58.692 40.909 0.00 0.00 0.00 1.82
260 261 2.962859 ACTGTGGGGCTTCAAGAAAAT 58.037 42.857 0.00 0.00 0.00 1.82
261 262 2.430332 CAACTGTGGGGCTTCAAGAAAA 59.570 45.455 0.00 0.00 0.00 2.29
262 263 2.031120 CAACTGTGGGGCTTCAAGAAA 58.969 47.619 0.00 0.00 0.00 2.52
263 264 1.064017 ACAACTGTGGGGCTTCAAGAA 60.064 47.619 0.00 0.00 0.00 2.52
264 265 0.550914 ACAACTGTGGGGCTTCAAGA 59.449 50.000 0.00 0.00 0.00 3.02
265 266 0.954452 GACAACTGTGGGGCTTCAAG 59.046 55.000 0.00 0.00 0.00 3.02
266 267 0.550914 AGACAACTGTGGGGCTTCAA 59.449 50.000 0.00 0.00 0.00 2.69
267 268 0.108585 GAGACAACTGTGGGGCTTCA 59.891 55.000 0.00 0.00 0.00 3.02
268 269 0.108585 TGAGACAACTGTGGGGCTTC 59.891 55.000 0.00 0.00 0.00 3.86
269 270 0.109342 CTGAGACAACTGTGGGGCTT 59.891 55.000 0.00 0.00 0.00 4.35
270 271 0.764369 TCTGAGACAACTGTGGGGCT 60.764 55.000 0.00 0.00 0.00 5.19
271 272 0.108585 TTCTGAGACAACTGTGGGGC 59.891 55.000 0.00 0.00 0.00 5.80
272 273 1.694150 TCTTCTGAGACAACTGTGGGG 59.306 52.381 0.00 0.00 0.00 4.96
273 274 3.692257 ATCTTCTGAGACAACTGTGGG 57.308 47.619 0.00 0.00 33.99 4.61
274 275 4.212847 CACAATCTTCTGAGACAACTGTGG 59.787 45.833 6.20 0.00 33.99 4.17
275 276 5.052481 TCACAATCTTCTGAGACAACTGTG 58.948 41.667 7.31 7.31 35.27 3.66
276 277 5.282055 TCACAATCTTCTGAGACAACTGT 57.718 39.130 0.00 0.00 33.99 3.55
277 278 6.798315 ATTCACAATCTTCTGAGACAACTG 57.202 37.500 0.00 0.00 33.99 3.16
278 279 6.769822 ACAATTCACAATCTTCTGAGACAACT 59.230 34.615 0.00 0.00 33.99 3.16
279 280 6.963796 ACAATTCACAATCTTCTGAGACAAC 58.036 36.000 0.00 0.00 33.99 3.32
280 281 7.572523 AACAATTCACAATCTTCTGAGACAA 57.427 32.000 0.00 0.00 33.99 3.18
281 282 7.572523 AAACAATTCACAATCTTCTGAGACA 57.427 32.000 0.00 0.00 33.99 3.41
282 283 8.993121 TCTAAACAATTCACAATCTTCTGAGAC 58.007 33.333 0.00 0.00 33.99 3.36
283 284 9.730705 ATCTAAACAATTCACAATCTTCTGAGA 57.269 29.630 0.00 0.00 36.09 3.27
284 285 9.985318 GATCTAAACAATTCACAATCTTCTGAG 57.015 33.333 0.00 0.00 0.00 3.35
285 286 8.950210 GGATCTAAACAATTCACAATCTTCTGA 58.050 33.333 0.00 0.00 0.00 3.27
286 287 8.954350 AGGATCTAAACAATTCACAATCTTCTG 58.046 33.333 0.00 0.00 0.00 3.02
293 294 9.567776 TGTTCTTAGGATCTAAACAATTCACAA 57.432 29.630 0.00 0.00 0.00 3.33
294 295 9.739276 ATGTTCTTAGGATCTAAACAATTCACA 57.261 29.630 0.00 0.00 33.92 3.58
304 305 9.137459 CCTCTGAACTATGTTCTTAGGATCTAA 57.863 37.037 18.19 0.00 0.00 2.10
305 306 7.726291 CCCTCTGAACTATGTTCTTAGGATCTA 59.274 40.741 21.69 0.00 0.00 1.98
306 307 6.553100 CCCTCTGAACTATGTTCTTAGGATCT 59.447 42.308 21.69 0.00 0.00 2.75
307 308 6.325286 ACCCTCTGAACTATGTTCTTAGGATC 59.675 42.308 21.69 0.00 0.00 3.36
308 309 6.206042 ACCCTCTGAACTATGTTCTTAGGAT 58.794 40.000 21.69 10.72 0.00 3.24
309 310 5.590818 ACCCTCTGAACTATGTTCTTAGGA 58.409 41.667 21.69 11.24 0.00 2.94
310 311 5.941555 ACCCTCTGAACTATGTTCTTAGG 57.058 43.478 17.04 17.04 0.00 2.69
311 312 8.532819 AGTTAACCCTCTGAACTATGTTCTTAG 58.467 37.037 0.88 8.21 31.69 2.18
312 313 8.311836 CAGTTAACCCTCTGAACTATGTTCTTA 58.688 37.037 0.88 0.00 32.22 2.10
313 314 7.162082 CAGTTAACCCTCTGAACTATGTTCTT 58.838 38.462 0.88 0.42 32.22 2.52
314 315 6.702329 CAGTTAACCCTCTGAACTATGTTCT 58.298 40.000 0.88 0.00 32.22 3.01
315 316 5.351740 GCAGTTAACCCTCTGAACTATGTTC 59.648 44.000 0.88 3.74 32.22 3.18
316 317 5.246307 GCAGTTAACCCTCTGAACTATGTT 58.754 41.667 0.88 0.00 32.22 2.71
317 318 4.323562 GGCAGTTAACCCTCTGAACTATGT 60.324 45.833 0.88 0.00 32.22 2.29
318 319 4.192317 GGCAGTTAACCCTCTGAACTATG 58.808 47.826 0.88 0.00 32.22 2.23
319 320 3.200165 GGGCAGTTAACCCTCTGAACTAT 59.800 47.826 0.88 0.00 44.68 2.12
320 321 2.570302 GGGCAGTTAACCCTCTGAACTA 59.430 50.000 0.88 0.00 44.68 2.24
321 322 1.351350 GGGCAGTTAACCCTCTGAACT 59.649 52.381 0.88 0.00 44.68 3.01
322 323 1.822506 GGGCAGTTAACCCTCTGAAC 58.177 55.000 0.88 0.00 44.68 3.18
323 324 2.738984 GGGGGCAGTTAACCCTCTGAA 61.739 57.143 0.88 0.00 45.36 3.02
324 325 1.205460 GGGGGCAGTTAACCCTCTGA 61.205 60.000 0.88 0.00 45.36 3.27
325 326 1.303282 GGGGGCAGTTAACCCTCTG 59.697 63.158 0.88 0.00 45.36 3.35
326 327 3.836617 GGGGGCAGTTAACCCTCT 58.163 61.111 0.88 0.00 45.36 3.69
330 331 0.683179 GGATGTGGGGGCAGTTAACC 60.683 60.000 0.88 0.00 0.00 2.85
331 332 0.039035 TGGATGTGGGGGCAGTTAAC 59.961 55.000 0.00 0.00 0.00 2.01
332 333 1.006813 ATGGATGTGGGGGCAGTTAA 58.993 50.000 0.00 0.00 0.00 2.01
333 334 0.550914 GATGGATGTGGGGGCAGTTA 59.449 55.000 0.00 0.00 0.00 2.24
334 335 1.307647 GATGGATGTGGGGGCAGTT 59.692 57.895 0.00 0.00 0.00 3.16
335 336 1.508667 TTGATGGATGTGGGGGCAGT 61.509 55.000 0.00 0.00 0.00 4.40
336 337 1.039233 GTTGATGGATGTGGGGGCAG 61.039 60.000 0.00 0.00 0.00 4.85
337 338 1.000233 GTTGATGGATGTGGGGGCA 60.000 57.895 0.00 0.00 0.00 5.36
338 339 1.758122 GGTTGATGGATGTGGGGGC 60.758 63.158 0.00 0.00 0.00 5.80
339 340 0.684153 GTGGTTGATGGATGTGGGGG 60.684 60.000 0.00 0.00 0.00 5.40
340 341 0.039472 TGTGGTTGATGGATGTGGGG 59.961 55.000 0.00 0.00 0.00 4.96
341 342 1.176527 GTGTGGTTGATGGATGTGGG 58.823 55.000 0.00 0.00 0.00 4.61
342 343 1.176527 GGTGTGGTTGATGGATGTGG 58.823 55.000 0.00 0.00 0.00 4.17
343 344 1.176527 GGGTGTGGTTGATGGATGTG 58.823 55.000 0.00 0.00 0.00 3.21
344 345 0.776810 TGGGTGTGGTTGATGGATGT 59.223 50.000 0.00 0.00 0.00 3.06
345 346 1.176527 GTGGGTGTGGTTGATGGATG 58.823 55.000 0.00 0.00 0.00 3.51
346 347 0.776810 TGTGGGTGTGGTTGATGGAT 59.223 50.000 0.00 0.00 0.00 3.41
347 348 0.553333 TTGTGGGTGTGGTTGATGGA 59.447 50.000 0.00 0.00 0.00 3.41
348 349 1.631405 ATTGTGGGTGTGGTTGATGG 58.369 50.000 0.00 0.00 0.00 3.51
349 350 2.627221 TCAATTGTGGGTGTGGTTGATG 59.373 45.455 5.13 0.00 0.00 3.07
350 351 2.956132 TCAATTGTGGGTGTGGTTGAT 58.044 42.857 5.13 0.00 0.00 2.57
351 352 2.443958 TCAATTGTGGGTGTGGTTGA 57.556 45.000 5.13 0.00 0.00 3.18
352 353 2.029110 GGATCAATTGTGGGTGTGGTTG 60.029 50.000 5.13 0.00 0.00 3.77
353 354 2.247358 GGATCAATTGTGGGTGTGGTT 58.753 47.619 5.13 0.00 0.00 3.67
354 355 1.146774 TGGATCAATTGTGGGTGTGGT 59.853 47.619 5.13 0.00 0.00 4.16
355 356 1.921982 TGGATCAATTGTGGGTGTGG 58.078 50.000 5.13 0.00 0.00 4.17
356 357 3.090790 TGATGGATCAATTGTGGGTGTG 58.909 45.455 5.13 0.00 33.08 3.82
357 358 3.454719 TGATGGATCAATTGTGGGTGT 57.545 42.857 5.13 0.00 33.08 4.16
358 359 4.804868 TTTGATGGATCAATTGTGGGTG 57.195 40.909 5.13 0.00 45.30 4.61
359 360 8.006564 ACTATATTTGATGGATCAATTGTGGGT 58.993 33.333 5.13 1.35 45.30 4.51
360 361 8.301720 CACTATATTTGATGGATCAATTGTGGG 58.698 37.037 5.13 0.87 45.30 4.61
361 362 8.301720 CCACTATATTTGATGGATCAATTGTGG 58.698 37.037 14.84 14.84 45.30 4.17
362 363 8.301720 CCCACTATATTTGATGGATCAATTGTG 58.698 37.037 5.13 6.13 45.30 3.33
363 364 7.039504 GCCCACTATATTTGATGGATCAATTGT 60.040 37.037 5.13 1.82 45.30 2.71
364 365 7.177921 AGCCCACTATATTTGATGGATCAATTG 59.822 37.037 0.00 0.00 45.30 2.32
365 366 7.177921 CAGCCCACTATATTTGATGGATCAATT 59.822 37.037 2.94 3.03 45.30 2.32
366 367 6.662234 CAGCCCACTATATTTGATGGATCAAT 59.338 38.462 2.94 0.00 45.30 2.57
367 368 6.005823 CAGCCCACTATATTTGATGGATCAA 58.994 40.000 0.00 0.00 44.42 2.57
368 369 5.073554 ACAGCCCACTATATTTGATGGATCA 59.926 40.000 0.00 0.00 33.80 2.92
369 370 5.564550 ACAGCCCACTATATTTGATGGATC 58.435 41.667 0.00 0.00 33.80 3.36
370 371 5.589367 ACAGCCCACTATATTTGATGGAT 57.411 39.130 0.00 0.00 33.80 3.41
371 372 5.104151 TCAACAGCCCACTATATTTGATGGA 60.104 40.000 0.00 0.00 33.80 3.41
372 373 5.132502 TCAACAGCCCACTATATTTGATGG 58.867 41.667 0.00 0.00 0.00 3.51
373 374 6.698008 TTCAACAGCCCACTATATTTGATG 57.302 37.500 0.00 0.00 0.00 3.07
374 375 7.293073 AGATTCAACAGCCCACTATATTTGAT 58.707 34.615 0.00 0.00 0.00 2.57
375 376 6.662755 AGATTCAACAGCCCACTATATTTGA 58.337 36.000 0.00 0.00 0.00 2.69
376 377 6.769822 AGAGATTCAACAGCCCACTATATTTG 59.230 38.462 0.00 0.00 0.00 2.32
377 378 6.904626 AGAGATTCAACAGCCCACTATATTT 58.095 36.000 0.00 0.00 0.00 1.40
378 379 6.506538 AGAGATTCAACAGCCCACTATATT 57.493 37.500 0.00 0.00 0.00 1.28
379 380 6.465035 GGAAGAGATTCAACAGCCCACTATAT 60.465 42.308 0.00 0.00 0.00 0.86
380 381 5.163301 GGAAGAGATTCAACAGCCCACTATA 60.163 44.000 0.00 0.00 0.00 1.31
381 382 4.384647 GGAAGAGATTCAACAGCCCACTAT 60.385 45.833 0.00 0.00 0.00 2.12
382 383 3.055094 GGAAGAGATTCAACAGCCCACTA 60.055 47.826 0.00 0.00 0.00 2.74
383 384 2.290577 GGAAGAGATTCAACAGCCCACT 60.291 50.000 0.00 0.00 0.00 4.00
384 385 2.087646 GGAAGAGATTCAACAGCCCAC 58.912 52.381 0.00 0.00 0.00 4.61
385 386 1.988107 AGGAAGAGATTCAACAGCCCA 59.012 47.619 0.00 0.00 0.00 5.36
386 387 2.797177 AGGAAGAGATTCAACAGCCC 57.203 50.000 0.00 0.00 0.00 5.19
387 388 3.013219 GGAAGGAAGAGATTCAACAGCC 58.987 50.000 0.00 0.00 0.00 4.85
388 389 3.938334 GAGGAAGGAAGAGATTCAACAGC 59.062 47.826 0.00 0.00 0.00 4.40
389 390 5.157940 TGAGGAAGGAAGAGATTCAACAG 57.842 43.478 0.00 0.00 0.00 3.16
390 391 4.564406 GCTGAGGAAGGAAGAGATTCAACA 60.564 45.833 0.00 0.00 0.00 3.33
391 392 3.938334 GCTGAGGAAGGAAGAGATTCAAC 59.062 47.826 0.00 0.00 0.00 3.18
392 393 3.843027 AGCTGAGGAAGGAAGAGATTCAA 59.157 43.478 0.00 0.00 0.00 2.69
393 394 3.448934 AGCTGAGGAAGGAAGAGATTCA 58.551 45.455 0.00 0.00 0.00 2.57
394 395 3.706086 AGAGCTGAGGAAGGAAGAGATTC 59.294 47.826 0.00 0.00 0.00 2.52
395 396 3.723325 AGAGCTGAGGAAGGAAGAGATT 58.277 45.455 0.00 0.00 0.00 2.40
396 397 3.403228 AGAGCTGAGGAAGGAAGAGAT 57.597 47.619 0.00 0.00 0.00 2.75
397 398 2.917713 AGAGCTGAGGAAGGAAGAGA 57.082 50.000 0.00 0.00 0.00 3.10
398 399 3.631250 ACTAGAGCTGAGGAAGGAAGAG 58.369 50.000 0.00 0.00 0.00 2.85
399 400 3.748645 ACTAGAGCTGAGGAAGGAAGA 57.251 47.619 0.00 0.00 0.00 2.87
400 401 5.385198 AGATACTAGAGCTGAGGAAGGAAG 58.615 45.833 0.00 0.00 0.00 3.46
401 402 5.396057 AGATACTAGAGCTGAGGAAGGAA 57.604 43.478 0.00 0.00 0.00 3.36
402 403 5.396057 AAGATACTAGAGCTGAGGAAGGA 57.604 43.478 0.00 0.00 0.00 3.36
403 404 5.833131 AGAAAGATACTAGAGCTGAGGAAGG 59.167 44.000 0.00 0.00 0.00 3.46
404 405 6.959639 AGAAAGATACTAGAGCTGAGGAAG 57.040 41.667 0.00 0.00 0.00 3.46
405 406 7.726033 AAAGAAAGATACTAGAGCTGAGGAA 57.274 36.000 0.00 0.00 0.00 3.36
406 407 7.726033 AAAAGAAAGATACTAGAGCTGAGGA 57.274 36.000 0.00 0.00 0.00 3.71
431 432 1.636519 TCTTAGGATCCCCCGCAAAAA 59.363 47.619 8.55 0.00 40.87 1.94
432 433 1.291109 TCTTAGGATCCCCCGCAAAA 58.709 50.000 8.55 0.00 40.87 2.44
433 434 1.291109 TTCTTAGGATCCCCCGCAAA 58.709 50.000 8.55 0.00 40.87 3.68
434 435 1.518367 ATTCTTAGGATCCCCCGCAA 58.482 50.000 8.55 0.00 40.87 4.85
435 436 1.518367 AATTCTTAGGATCCCCCGCA 58.482 50.000 8.55 0.00 40.87 5.69
436 437 2.158667 TGAAATTCTTAGGATCCCCCGC 60.159 50.000 8.55 0.00 40.87 6.13
437 438 3.391296 TCTGAAATTCTTAGGATCCCCCG 59.609 47.826 8.55 0.00 40.87 5.73
438 439 4.202514 CCTCTGAAATTCTTAGGATCCCCC 60.203 50.000 8.55 0.00 0.00 5.40
439 440 4.202514 CCCTCTGAAATTCTTAGGATCCCC 60.203 50.000 8.55 0.00 0.00 4.81
440 441 4.413851 ACCCTCTGAAATTCTTAGGATCCC 59.586 45.833 8.55 0.00 0.00 3.85
441 442 5.638530 ACCCTCTGAAATTCTTAGGATCC 57.361 43.478 2.48 2.48 0.00 3.36
442 443 6.317391 CACAACCCTCTGAAATTCTTAGGATC 59.683 42.308 13.38 0.00 0.00 3.36
443 444 6.012508 TCACAACCCTCTGAAATTCTTAGGAT 60.013 38.462 13.38 0.00 0.00 3.24
444 445 5.309543 TCACAACCCTCTGAAATTCTTAGGA 59.690 40.000 13.38 0.00 0.00 2.94
445 446 5.560724 TCACAACCCTCTGAAATTCTTAGG 58.439 41.667 7.07 7.07 0.00 2.69
446 447 7.693969 ATTCACAACCCTCTGAAATTCTTAG 57.306 36.000 0.00 0.00 30.32 2.18
447 448 9.753674 ATAATTCACAACCCTCTGAAATTCTTA 57.246 29.630 0.00 0.00 30.32 2.10
448 449 6.983906 AATTCACAACCCTCTGAAATTCTT 57.016 33.333 0.00 0.00 30.32 2.52
449 450 9.401058 CTATAATTCACAACCCTCTGAAATTCT 57.599 33.333 0.00 0.00 30.32 2.40
450 451 9.178758 ACTATAATTCACAACCCTCTGAAATTC 57.821 33.333 0.00 0.00 30.32 2.17
451 452 9.533831 AACTATAATTCACAACCCTCTGAAATT 57.466 29.630 0.00 0.00 30.32 1.82
452 453 9.178758 GAACTATAATTCACAACCCTCTGAAAT 57.821 33.333 0.00 0.00 30.32 2.17
453 454 7.333423 CGAACTATAATTCACAACCCTCTGAAA 59.667 37.037 0.00 0.00 30.32 2.69
454 455 6.816640 CGAACTATAATTCACAACCCTCTGAA 59.183 38.462 0.00 0.00 0.00 3.02
455 456 6.338146 CGAACTATAATTCACAACCCTCTGA 58.662 40.000 0.00 0.00 0.00 3.27
456 457 5.006746 GCGAACTATAATTCACAACCCTCTG 59.993 44.000 0.00 0.00 0.00 3.35
457 458 5.104900 AGCGAACTATAATTCACAACCCTCT 60.105 40.000 0.00 0.00 0.00 3.69
458 459 5.116882 AGCGAACTATAATTCACAACCCTC 58.883 41.667 0.00 0.00 0.00 4.30
459 460 5.099042 AGCGAACTATAATTCACAACCCT 57.901 39.130 0.00 0.00 0.00 4.34
460 461 5.813080 AAGCGAACTATAATTCACAACCC 57.187 39.130 0.00 0.00 0.00 4.11
461 462 6.608610 ACAAAGCGAACTATAATTCACAACC 58.391 36.000 0.00 0.00 0.00 3.77
464 465 9.811995 ACTATACAAAGCGAACTATAATTCACA 57.188 29.630 0.00 0.00 0.00 3.58
470 471 9.297586 CAGTTCACTATACAAAGCGAACTATAA 57.702 33.333 6.89 0.00 43.54 0.98
471 472 8.464404 ACAGTTCACTATACAAAGCGAACTATA 58.536 33.333 6.89 0.00 43.54 1.31
472 473 7.275779 CACAGTTCACTATACAAAGCGAACTAT 59.724 37.037 6.89 0.00 43.54 2.12
473 474 6.584942 CACAGTTCACTATACAAAGCGAACTA 59.415 38.462 6.89 0.00 43.54 2.24
474 475 5.405571 CACAGTTCACTATACAAAGCGAACT 59.594 40.000 0.00 0.00 45.28 3.01
475 476 5.609088 CACAGTTCACTATACAAAGCGAAC 58.391 41.667 0.00 0.00 38.33 3.95
476 477 4.151689 GCACAGTTCACTATACAAAGCGAA 59.848 41.667 0.00 0.00 0.00 4.70
477 478 3.678072 GCACAGTTCACTATACAAAGCGA 59.322 43.478 0.00 0.00 0.00 4.93
478 479 3.481951 CGCACAGTTCACTATACAAAGCG 60.482 47.826 0.00 0.00 0.00 4.68
479 480 3.181520 CCGCACAGTTCACTATACAAAGC 60.182 47.826 0.00 0.00 0.00 3.51
480 481 3.994392 ACCGCACAGTTCACTATACAAAG 59.006 43.478 0.00 0.00 0.00 2.77
481 482 3.997762 ACCGCACAGTTCACTATACAAA 58.002 40.909 0.00 0.00 0.00 2.83
482 483 3.671008 ACCGCACAGTTCACTATACAA 57.329 42.857 0.00 0.00 0.00 2.41
483 484 3.671008 AACCGCACAGTTCACTATACA 57.329 42.857 0.00 0.00 0.00 2.29
484 485 3.060363 CGAAACCGCACAGTTCACTATAC 59.940 47.826 0.00 0.00 0.00 1.47
485 486 3.247442 CGAAACCGCACAGTTCACTATA 58.753 45.455 0.00 0.00 0.00 1.31
486 487 2.066262 CGAAACCGCACAGTTCACTAT 58.934 47.619 0.00 0.00 0.00 2.12
489 490 4.893241 CGAAACCGCACAGTTCAC 57.107 55.556 0.00 0.00 0.00 3.18
617 618 2.992543 GTGTTGTGTTGTGTTGTGCAAT 59.007 40.909 0.00 0.00 0.00 3.56
636 637 6.671190 ACTCATGTAATGTGATGTGTTTGTG 58.329 36.000 0.00 0.00 46.80 3.33
637 638 6.882610 ACTCATGTAATGTGATGTGTTTGT 57.117 33.333 0.00 0.00 46.80 2.83
638 639 9.494479 GATAACTCATGTAATGTGATGTGTTTG 57.506 33.333 0.00 0.00 46.80 2.93
639 640 9.453572 AGATAACTCATGTAATGTGATGTGTTT 57.546 29.630 0.00 0.00 46.80 2.83
652 653 5.422331 GGCCTGGCTATAGATAACTCATGTA 59.578 44.000 19.68 0.00 0.00 2.29
663 664 0.189574 AGCAGAGGCCTGGCTATAGA 59.810 55.000 23.50 0.00 42.56 1.98
667 668 1.492133 AAACAGCAGAGGCCTGGCTA 61.492 55.000 24.10 0.00 42.56 3.93
668 669 2.363292 AAAACAGCAGAGGCCTGGCT 62.363 55.000 20.19 20.19 42.56 4.75
669 670 1.871126 GAAAACAGCAGAGGCCTGGC 61.871 60.000 12.00 14.89 42.56 4.85
670 671 1.246737 GGAAAACAGCAGAGGCCTGG 61.247 60.000 12.00 2.48 42.56 4.45
671 672 0.251077 AGGAAAACAGCAGAGGCCTG 60.251 55.000 12.00 0.00 42.56 4.85
672 673 1.362224 TAGGAAAACAGCAGAGGCCT 58.638 50.000 3.86 3.86 42.56 5.19
673 674 2.426842 ATAGGAAAACAGCAGAGGCC 57.573 50.000 0.00 0.00 42.56 5.19
674 675 4.123506 GACTATAGGAAAACAGCAGAGGC 58.876 47.826 4.43 0.00 41.61 4.70
675 676 5.344743 TGACTATAGGAAAACAGCAGAGG 57.655 43.478 4.43 0.00 0.00 3.69
676 677 5.582665 GGTTGACTATAGGAAAACAGCAGAG 59.417 44.000 4.43 0.00 0.00 3.35
677 678 5.488341 GGTTGACTATAGGAAAACAGCAGA 58.512 41.667 4.43 0.00 0.00 4.26
688 689 0.106149 GGTGGCCGGTTGACTATAGG 59.894 60.000 1.90 0.00 0.00 2.57
757 764 0.739813 GTCACCGTTTCCCGATCTGG 60.740 60.000 0.00 0.00 39.56 3.86
759 766 1.595357 GGTCACCGTTTCCCGATCT 59.405 57.895 0.00 0.00 39.56 2.75
883 890 3.323136 GTATGGACGCGAGCGCAG 61.323 66.667 15.93 3.93 44.19 5.18
884 891 3.634702 TTGTATGGACGCGAGCGCA 62.635 57.895 15.93 8.76 44.19 6.09
885 892 2.449525 TTTGTATGGACGCGAGCGC 61.450 57.895 15.93 8.99 44.19 5.92
886 893 1.343821 GTTTGTATGGACGCGAGCG 59.656 57.895 15.93 16.38 46.03 5.03
887 894 1.343821 CGTTTGTATGGACGCGAGC 59.656 57.895 15.93 3.71 32.11 5.03
892 899 1.724654 GCAACTGCGTTTGTATGGACG 60.725 52.381 0.00 0.00 41.89 4.79
911 918 0.247301 GATTCTGTACTTGTGCGCGC 60.247 55.000 27.26 27.26 0.00 6.86
1158 1173 2.116736 TAGCCGTTGTCGTCGTCGTT 62.117 55.000 1.33 0.00 38.33 3.85
1316 1340 2.011222 ACTACTCAGTCGCTCACTAGC 58.989 52.381 0.00 0.00 45.86 3.42
1367 1393 7.217200 TCTAATGGGCTAGCTAATTACAGTTG 58.783 38.462 15.72 7.10 0.00 3.16
1401 1427 5.774690 ACTATTTCTTTGGATGCAAACTCCA 59.225 36.000 8.47 3.30 41.03 3.86
1485 1517 4.890158 TTGTCCTGCTGTTTCAGATCTA 57.110 40.909 0.00 0.00 36.19 1.98
1545 1586 2.149383 AAGCTCTGGCAGGGACACA 61.149 57.895 20.97 0.00 41.70 3.72
1546 1587 1.673665 CAAGCTCTGGCAGGGACAC 60.674 63.158 20.97 0.00 41.70 3.67
1556 1597 0.392193 ATTGACCGCTCCAAGCTCTG 60.392 55.000 0.00 0.00 39.60 3.35
1581 1626 3.190535 CCTCGGAAATTAAACACACAGGG 59.809 47.826 0.00 0.00 0.00 4.45
1585 1630 2.413634 CGCCCTCGGAAATTAAACACAC 60.414 50.000 0.00 0.00 0.00 3.82
1586 1631 1.807742 CGCCCTCGGAAATTAAACACA 59.192 47.619 0.00 0.00 0.00 3.72
1629 1674 2.281484 TCCGCTTGCCACACCTTC 60.281 61.111 0.00 0.00 0.00 3.46
1730 1775 6.894339 TGTGTACTGATGATATATCACGGT 57.106 37.500 17.60 20.65 40.03 4.83
1731 1776 8.650714 CAAATGTGTACTGATGATATATCACGG 58.349 37.037 17.60 16.80 40.03 4.94
1740 1785 9.453572 AGATAACAACAAATGTGTACTGATGAT 57.546 29.630 0.00 0.00 42.99 2.45
1785 1830 0.739561 ATCTCCTACACGACGCTTCC 59.260 55.000 0.00 0.00 0.00 3.46
1827 1908 0.816018 CACACTACACGGCCAAACCA 60.816 55.000 2.24 0.00 39.03 3.67
1845 1926 2.380064 AATGTTTGACCTTCCAGCCA 57.620 45.000 0.00 0.00 0.00 4.75
1924 2005 5.559770 TCTGACATGTTTTTCCTGCTGATA 58.440 37.500 0.00 0.00 0.00 2.15
1929 2010 4.836125 TCTTCTGACATGTTTTTCCTGC 57.164 40.909 0.00 0.00 0.00 4.85
1977 2058 3.795688 AAACAGAGCCTGGAAATCAGA 57.204 42.857 0.00 0.00 46.18 3.27
2024 2110 9.628500 AGGAGATTAGCTCGGTTAAAATTATTT 57.372 29.630 0.00 0.00 44.91 1.40
2028 2114 7.067129 GGAAAGGAGATTAGCTCGGTTAAAATT 59.933 37.037 0.00 0.00 44.91 1.82
2029 2115 6.542735 GGAAAGGAGATTAGCTCGGTTAAAAT 59.457 38.462 0.00 0.00 44.91 1.82
2054 2141 6.904498 TGTTTCCGTTATGTCAAAGGTAATG 58.096 36.000 0.00 0.00 0.00 1.90
2060 2147 6.055231 TGTTCTGTTTCCGTTATGTCAAAG 57.945 37.500 0.00 0.00 0.00 2.77
2071 2158 5.880054 ATATTGGAACTGTTCTGTTTCCG 57.120 39.130 19.05 0.00 0.00 4.30
2072 2159 7.681939 TGTATATTGGAACTGTTCTGTTTCC 57.318 36.000 19.05 3.88 0.00 3.13
2079 2166 9.994432 CTGAATCTTTGTATATTGGAACTGTTC 57.006 33.333 12.05 12.05 0.00 3.18
2091 2178 6.724893 TCCCATCGTCTGAATCTTTGTATA 57.275 37.500 0.00 0.00 0.00 1.47
2092 2179 5.614324 TCCCATCGTCTGAATCTTTGTAT 57.386 39.130 0.00 0.00 0.00 2.29
2099 2186 4.759782 TCTCTTTTCCCATCGTCTGAATC 58.240 43.478 0.00 0.00 0.00 2.52
2101 2188 4.617253 TTCTCTTTTCCCATCGTCTGAA 57.383 40.909 0.00 0.00 0.00 3.02
2107 2194 2.742053 TCGCTTTTCTCTTTTCCCATCG 59.258 45.455 0.00 0.00 0.00 3.84
2145 2232 0.606944 GGGTGTGTGCCGTGGATTTA 60.607 55.000 0.00 0.00 0.00 1.40
2150 2237 4.866224 TGTGGGTGTGTGCCGTGG 62.866 66.667 0.00 0.00 0.00 4.94
2154 2241 2.953821 CGAATGTGGGTGTGTGCC 59.046 61.111 0.00 0.00 0.00 5.01
2156 2243 1.282570 GTGCGAATGTGGGTGTGTG 59.717 57.895 0.00 0.00 0.00 3.82
2161 2248 1.519408 GTAAGTGTGCGAATGTGGGT 58.481 50.000 0.00 0.00 0.00 4.51
2170 2257 2.927004 ACACCATGGTAAGTGTGCG 58.073 52.632 19.28 4.93 45.24 5.34
2175 2262 4.178956 AGGTTTTCACACCATGGTAAGT 57.821 40.909 19.28 9.84 39.62 2.24
2186 2273 7.548097 TGTTTTTGTGCTAATAGGTTTTCACA 58.452 30.769 0.00 0.00 33.29 3.58
2187 2274 7.995463 TGTTTTTGTGCTAATAGGTTTTCAC 57.005 32.000 0.00 0.00 0.00 3.18
2188 2275 8.254508 ACTTGTTTTTGTGCTAATAGGTTTTCA 58.745 29.630 0.00 0.00 0.00 2.69
2197 2284 7.102993 ACTTTTGGACTTGTTTTTGTGCTAAT 58.897 30.769 0.00 0.00 0.00 1.73
2206 2293 8.720562 CAAATGAGAAACTTTTGGACTTGTTTT 58.279 29.630 0.00 0.00 38.86 2.43
2221 2308 6.329496 TGTGGTTTCAGTTCAAATGAGAAAC 58.671 36.000 13.92 13.92 44.32 2.78
2232 2319 7.757624 TCAAAATAAGTGTTGTGGTTTCAGTTC 59.242 33.333 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.