Multiple sequence alignment - TraesCS2B01G388900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G388900 chr2B 100.000 6136 0 0 1 6136 551647063 551640928 0.000000e+00 11332
1 TraesCS2B01G388900 chr2B 96.104 385 12 3 3514 3897 636549863 636550245 5.220000e-175 625
2 TraesCS2B01G388900 chr2A 93.466 2755 103 38 1 2716 614000448 613997732 0.000000e+00 4019
3 TraesCS2B01G388900 chr2A 96.623 2280 44 8 3887 6136 613996881 613994605 0.000000e+00 3753
4 TraesCS2B01G388900 chr2A 96.468 821 13 2 2707 3526 613997670 613996865 0.000000e+00 1341
5 TraesCS2B01G388900 chr2A 96.124 387 10 4 3518 3901 329693484 329693868 1.450000e-175 627
6 TraesCS2B01G388900 chr2D 96.236 2285 45 9 3887 6136 472475889 472473611 0.000000e+00 3705
7 TraesCS2B01G388900 chr2D 96.608 2034 49 12 693 2716 472478777 472476754 0.000000e+00 3356
8 TraesCS2B01G388900 chr2D 98.780 820 10 0 2707 3526 472476692 472475873 0.000000e+00 1459
9 TraesCS2B01G388900 chr2D 98.895 362 3 1 3525 3886 295166007 295166367 0.000000e+00 645
10 TraesCS2B01G388900 chr2D 96.134 388 12 3 3517 3903 402239077 402239462 1.120000e-176 630
11 TraesCS2B01G388900 chr2D 86.909 550 49 13 1 531 472481578 472481033 4.090000e-166 595
12 TraesCS2B01G388900 chr3B 99.458 369 1 1 3519 3886 22780147 22779779 0.000000e+00 669
13 TraesCS2B01G388900 chr3B 80.098 407 70 9 4727 5130 449841328 449841726 6.020000e-75 292
14 TraesCS2B01G388900 chr4A 100.000 357 0 0 3525 3881 391546191 391546547 0.000000e+00 660
15 TraesCS2B01G388900 chr4B 99.720 357 1 0 3525 3881 215922930 215923286 0.000000e+00 654
16 TraesCS2B01G388900 chr6A 99.174 363 2 1 3525 3886 158065763 158065401 0.000000e+00 652
17 TraesCS2B01G388900 chr1D 98.087 366 6 1 3524 3888 333498343 333497978 2.410000e-178 636
18 TraesCS2B01G388900 chr7A 80.029 681 78 36 4919 5565 726602281 726601625 9.380000e-123 451
19 TraesCS2B01G388900 chr5D 81.728 405 64 8 4727 5128 208539713 208539316 4.590000e-86 329
20 TraesCS2B01G388900 chr5D 93.056 72 3 2 5495 5565 484657360 484657290 3.030000e-18 104
21 TraesCS2B01G388900 chr5B 81.000 400 65 9 4734 5130 31287531 31287922 2.150000e-79 307
22 TraesCS2B01G388900 chr5A 80.344 407 70 8 4727 5130 3456764 3456365 3.600000e-77 300
23 TraesCS2B01G388900 chr3A 80.296 406 70 7 4727 5130 57910746 57911143 1.290000e-76 298
24 TraesCS2B01G388900 chr3A 80.098 407 71 8 4727 5130 745552497 745552896 1.670000e-75 294
25 TraesCS2B01G388900 chr7B 93.056 72 3 2 5495 5565 102760785 102760715 3.030000e-18 104
26 TraesCS2B01G388900 chr6B 93.056 72 3 2 5495 5565 623362621 623362551 3.030000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G388900 chr2B 551640928 551647063 6135 True 11332.000000 11332 100.00000 1 6136 1 chr2B.!!$R1 6135
1 TraesCS2B01G388900 chr2A 613994605 614000448 5843 True 3037.666667 4019 95.51900 1 6136 3 chr2A.!!$R1 6135
2 TraesCS2B01G388900 chr2D 472473611 472481578 7967 True 2278.750000 3705 94.63325 1 6136 4 chr2D.!!$R1 6135
3 TraesCS2B01G388900 chr7A 726601625 726602281 656 True 451.000000 451 80.02900 4919 5565 1 chr7A.!!$R1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 330 0.110104 CATGATCCTCCCTGGCCTTC 59.890 60.000 3.32 0.00 35.26 3.46 F
871 3095 0.670854 AGCGTCGCCTTTTCTTCTCC 60.671 55.000 14.86 0.00 0.00 3.71 F
1188 3425 0.166814 CAGGAAGCTTTAGTGCGCAC 59.833 55.000 32.79 32.79 38.13 5.34 F
2102 4341 1.130186 GAGCACTTAAAGCTGCTGAGC 59.870 52.381 1.35 0.00 43.94 4.26 F
3596 5909 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52 F
3748 6061 0.031449 GCCAACGCAAAAACTAGCCA 59.969 50.000 0.00 0.00 34.03 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1130 3367 0.689745 TGAATCTAGGACCCCCGTGG 60.690 60.000 0.00 0.00 41.37 4.94 R
2102 4341 5.542779 ACTCAGAAGTAAGGCTTACACAAG 58.457 41.667 32.48 25.35 37.59 3.16 R
2166 4405 6.016555 ACAATTTAGTTAGCACCATTTCCCT 58.983 36.000 0.00 0.00 0.00 4.20 R
3658 5971 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94 R
4708 7063 1.838715 AGCCATGTCAGATGAGCTCTT 59.161 47.619 16.19 8.82 29.16 2.85 R
5668 8057 3.907474 TGGGATAAGAGTTGTCCTTCACA 59.093 43.478 2.88 0.00 40.46 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 3.011144 TCCTTACAATCCATGCCCTTCAA 59.989 43.478 0.00 0.00 0.00 2.69
163 164 1.078214 GCCAGTGCCTCTACATGCA 60.078 57.895 0.00 0.00 34.54 3.96
175 176 2.299013 TCTACATGCACCGACTTGTCTT 59.701 45.455 0.00 0.00 0.00 3.01
176 177 1.229428 ACATGCACCGACTTGTCTTG 58.771 50.000 0.00 0.00 0.00 3.02
199 200 4.156556 GGATGAGTTTTGCTATGACTTGCA 59.843 41.667 0.00 0.00 37.42 4.08
217 218 3.256960 GCTCAACACCCCTCCCCA 61.257 66.667 0.00 0.00 0.00 4.96
227 228 1.852626 CCCTCCCCACACCTTTCCT 60.853 63.158 0.00 0.00 0.00 3.36
270 271 1.211456 CCCCTTGCTCTCTCCATCTT 58.789 55.000 0.00 0.00 0.00 2.40
289 290 6.146837 CCATCTTAGACAACTTCACACTCTTG 59.853 42.308 0.00 0.00 0.00 3.02
320 321 1.350351 CCACCTGATCCATGATCCTCC 59.650 57.143 0.00 0.00 38.20 4.30
329 330 0.110104 CATGATCCTCCCTGGCCTTC 59.890 60.000 3.32 0.00 35.26 3.46
345 346 1.002468 CCTTCGCCAACAAACAGACAG 60.002 52.381 0.00 0.00 0.00 3.51
352 353 1.670811 CAACAAACAGACAGCCGAAGT 59.329 47.619 0.00 0.00 0.00 3.01
360 361 1.697982 AGACAGCCGAAGTTAGGGTTT 59.302 47.619 3.73 0.00 37.38 3.27
362 363 3.056035 AGACAGCCGAAGTTAGGGTTTAG 60.056 47.826 3.73 0.00 37.38 1.85
392 411 2.028567 TGCACACACGGAATGTCTATCA 60.029 45.455 0.00 0.00 40.64 2.15
411 430 5.815233 ATCATGAAAGGACGATATGGACT 57.185 39.130 0.00 0.00 0.00 3.85
449 468 2.107378 AGACTCGGCAGGATCTGATCTA 59.893 50.000 16.61 0.00 32.44 1.98
452 471 3.245229 ACTCGGCAGGATCTGATCTATCT 60.245 47.826 16.61 3.64 32.44 1.98
455 474 3.172339 GGCAGGATCTGATCTATCTGGT 58.828 50.000 16.61 0.00 32.44 4.00
543 563 4.595538 TCACACGGCCCACACGAC 62.596 66.667 0.00 0.00 34.93 4.34
603 2787 7.636259 TTTTCGAGGCAAAGTTGAATTATTG 57.364 32.000 0.00 0.00 0.00 1.90
631 2815 8.539770 TTGTTTGACACAAAATTTGCTCTAAA 57.460 26.923 5.52 0.92 42.76 1.85
632 2816 7.958674 TGTTTGACACAAAATTTGCTCTAAAC 58.041 30.769 5.52 12.19 29.87 2.01
633 2817 7.064016 TGTTTGACACAAAATTTGCTCTAAACC 59.936 33.333 17.82 8.06 29.87 3.27
634 2818 5.596845 TGACACAAAATTTGCTCTAAACCC 58.403 37.500 5.52 0.00 0.00 4.11
635 2819 4.956085 ACACAAAATTTGCTCTAAACCCC 58.044 39.130 5.52 0.00 0.00 4.95
636 2820 4.202315 ACACAAAATTTGCTCTAAACCCCC 60.202 41.667 5.52 0.00 0.00 5.40
759 2983 1.809547 GAGCAAGAAGAGTTGGGCTTC 59.190 52.381 0.00 0.00 41.53 3.86
792 3016 1.403679 CCAACAAGGAACGTGCAAGAA 59.596 47.619 6.65 0.00 42.85 2.52
798 3022 1.347707 AGGAACGTGCAAGAAGATCCA 59.652 47.619 6.65 0.00 0.00 3.41
871 3095 0.670854 AGCGTCGCCTTTTCTTCTCC 60.671 55.000 14.86 0.00 0.00 3.71
913 3137 1.195115 CTCGTCCTCCAGAATTCCCA 58.805 55.000 0.65 0.00 0.00 4.37
998 3228 2.430921 CGACGCGAGGCAAGAAGT 60.431 61.111 15.93 0.00 41.50 3.01
1130 3367 0.459759 CGAGTTTTAGTCCCCGGAGC 60.460 60.000 0.73 0.00 0.00 4.70
1158 3395 2.367241 GGTCCTAGATTCAAGCCTCTCC 59.633 54.545 0.00 0.00 0.00 3.71
1186 3423 1.135523 GCAGGAAGCTTTAGTGCGC 59.864 57.895 0.00 0.00 41.15 6.09
1187 3424 1.577328 GCAGGAAGCTTTAGTGCGCA 61.577 55.000 5.66 5.66 41.15 6.09
1188 3425 0.166814 CAGGAAGCTTTAGTGCGCAC 59.833 55.000 32.79 32.79 38.13 5.34
1189 3426 1.132640 GGAAGCTTTAGTGCGCACG 59.867 57.895 32.94 20.54 38.13 5.34
1298 3535 4.994852 CCCGAGAGATCTCTTGTAGTCTAG 59.005 50.000 30.10 17.13 40.61 2.43
1299 3536 5.454187 CCCGAGAGATCTCTTGTAGTCTAGT 60.454 48.000 30.10 5.91 40.61 2.57
1300 3537 5.694910 CCGAGAGATCTCTTGTAGTCTAGTC 59.305 48.000 30.10 12.84 40.61 2.59
1301 3538 6.277605 CGAGAGATCTCTTGTAGTCTAGTCA 58.722 44.000 25.81 0.00 40.61 3.41
1337 3574 1.500474 TTGGATGCTCTAGGACTGGG 58.500 55.000 0.00 0.00 0.00 4.45
1340 3577 1.899142 GGATGCTCTAGGACTGGGATC 59.101 57.143 0.00 0.00 0.00 3.36
1366 3603 9.235537 CAATAGCACGATATCTCTATTGATGAG 57.764 37.037 25.57 11.85 45.38 2.90
1490 3727 5.324409 TCCTTGCCACATATTTCTTCAACT 58.676 37.500 0.00 0.00 0.00 3.16
1617 3854 8.074972 ACGTACGGAGAAGAAATAATAGATCAC 58.925 37.037 21.06 0.00 0.00 3.06
2068 4307 2.034053 GGTTGTCTTTCAAATCGGCACA 59.966 45.455 0.00 0.00 37.81 4.57
2080 4319 2.012237 CGGCACATCAGATGCTGTC 58.988 57.895 10.59 8.58 43.26 3.51
2102 4341 1.130186 GAGCACTTAAAGCTGCTGAGC 59.870 52.381 1.35 0.00 43.94 4.26
2133 4372 5.685728 AGCCTTACTTCTGAGTTTGTTCTT 58.314 37.500 0.00 0.00 37.33 2.52
2166 4405 8.550710 AATAACTTAAAGTGCACCGTGTTATA 57.449 30.769 14.63 0.44 31.69 0.98
2173 4412 3.054655 AGTGCACCGTGTTATAGGGAAAT 60.055 43.478 14.63 0.00 37.75 2.17
2285 4525 7.616528 TTCATCCTCATCAGGTGTAATGATA 57.383 36.000 0.00 0.00 41.28 2.15
2404 4644 6.466812 TGATGTACATGCCTATATGGTCTTG 58.533 40.000 14.43 0.00 38.35 3.02
2802 5114 6.653740 GCCCACTATCCATACATTAACTAACC 59.346 42.308 0.00 0.00 0.00 2.85
3191 5503 7.389884 TGAGAAATGCATAAATAGATCTCAGCC 59.610 37.037 0.00 0.00 37.67 4.85
3214 5526 4.460948 AAATCTCGCTACTTCGGGTTTA 57.539 40.909 0.00 0.00 0.00 2.01
3536 5849 5.365403 TGTTTTTAACAACTCCGCCTATG 57.635 39.130 6.10 0.00 38.72 2.23
3537 5850 4.822896 TGTTTTTAACAACTCCGCCTATGT 59.177 37.500 6.10 0.00 38.72 2.29
3538 5851 5.049267 TGTTTTTAACAACTCCGCCTATGTC 60.049 40.000 6.10 0.00 38.72 3.06
3539 5852 4.546829 TTTAACAACTCCGCCTATGTCT 57.453 40.909 0.00 0.00 0.00 3.41
3540 5853 4.546829 TTAACAACTCCGCCTATGTCTT 57.453 40.909 0.00 0.00 0.00 3.01
3541 5854 2.674796 ACAACTCCGCCTATGTCTTC 57.325 50.000 0.00 0.00 0.00 2.87
3542 5855 2.180276 ACAACTCCGCCTATGTCTTCT 58.820 47.619 0.00 0.00 0.00 2.85
3543 5856 3.362706 ACAACTCCGCCTATGTCTTCTA 58.637 45.455 0.00 0.00 0.00 2.10
3544 5857 3.381908 ACAACTCCGCCTATGTCTTCTAG 59.618 47.826 0.00 0.00 0.00 2.43
3545 5858 2.588620 ACTCCGCCTATGTCTTCTAGG 58.411 52.381 0.00 0.00 39.06 3.02
3561 5874 2.203209 GGCATAGCCGGTCCCAAG 60.203 66.667 1.90 0.00 39.62 3.61
3562 5875 2.902343 GCATAGCCGGTCCCAAGC 60.902 66.667 1.90 0.00 0.00 4.01
3563 5876 2.203209 CATAGCCGGTCCCAAGCC 60.203 66.667 1.90 0.00 0.00 4.35
3564 5877 3.489513 ATAGCCGGTCCCAAGCCC 61.490 66.667 1.90 0.00 0.00 5.19
3573 5886 2.044352 CCCAAGCCCGGGTAAAGG 60.044 66.667 24.63 18.41 41.83 3.11
3574 5887 2.608550 CCCAAGCCCGGGTAAAGGA 61.609 63.158 24.63 0.00 41.83 3.36
3575 5888 1.077716 CCAAGCCCGGGTAAAGGAG 60.078 63.158 24.63 5.31 0.00 3.69
3576 5889 1.077716 CAAGCCCGGGTAAAGGAGG 60.078 63.158 24.63 0.00 0.00 4.30
3577 5890 1.229723 AAGCCCGGGTAAAGGAGGA 60.230 57.895 24.63 0.00 0.00 3.71
3578 5891 1.272554 AAGCCCGGGTAAAGGAGGAG 61.273 60.000 24.63 0.00 0.00 3.69
3579 5892 2.743179 GCCCGGGTAAAGGAGGAGG 61.743 68.421 24.63 0.00 0.00 4.30
3580 5893 2.070650 CCCGGGTAAAGGAGGAGGG 61.071 68.421 14.18 0.00 0.00 4.30
3581 5894 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
3582 5895 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
3583 5896 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
3584 5897 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
3585 5898 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
3586 5899 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
3587 5900 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
3588 5901 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
3589 5902 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
3590 5903 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
3591 5904 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
3592 5905 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
3593 5906 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
3594 5907 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
3595 5908 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
3596 5909 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
3597 5910 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
3598 5911 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
3599 5912 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
3610 5923 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
3611 5924 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
3612 5925 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
3613 5926 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
3614 5927 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
3615 5928 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
3616 5929 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
3617 5930 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
3618 5931 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
3619 5932 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
3620 5933 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
3621 5934 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
3622 5935 3.187842 CCAACGTAAAAACTAGCCAGTCC 59.812 47.826 0.00 0.00 32.29 3.85
3623 5936 3.049708 ACGTAAAAACTAGCCAGTCCC 57.950 47.619 0.00 0.00 32.29 4.46
3624 5937 2.369532 ACGTAAAAACTAGCCAGTCCCA 59.630 45.455 0.00 0.00 32.29 4.37
3625 5938 3.008704 ACGTAAAAACTAGCCAGTCCCAT 59.991 43.478 0.00 0.00 32.29 4.00
3626 5939 3.374058 CGTAAAAACTAGCCAGTCCCATG 59.626 47.826 0.00 0.00 32.29 3.66
3627 5940 2.514458 AAAACTAGCCAGTCCCATGG 57.486 50.000 4.14 4.14 43.72 3.66
3628 5941 0.625849 AAACTAGCCAGTCCCATGGG 59.374 55.000 26.30 26.30 40.97 4.00
3632 5945 4.907457 GCCAGTCCCATGGGTATG 57.093 61.111 30.28 26.25 40.97 2.39
3633 5946 2.230664 GCCAGTCCCATGGGTATGA 58.769 57.895 30.28 8.41 40.97 2.15
3634 5947 0.550914 GCCAGTCCCATGGGTATGAA 59.449 55.000 30.28 7.98 40.97 2.57
3635 5948 1.064017 GCCAGTCCCATGGGTATGAAA 60.064 52.381 30.28 7.14 40.97 2.69
3636 5949 2.654863 CCAGTCCCATGGGTATGAAAC 58.345 52.381 30.28 19.33 36.36 2.78
3647 5960 3.420839 GGTATGAAACCCATTTGAGCG 57.579 47.619 0.00 0.00 43.16 5.03
3648 5961 3.013921 GGTATGAAACCCATTTGAGCGA 58.986 45.455 0.00 0.00 43.16 4.93
3649 5962 3.065371 GGTATGAAACCCATTTGAGCGAG 59.935 47.826 0.00 0.00 43.16 5.03
3650 5963 2.559698 TGAAACCCATTTGAGCGAGA 57.440 45.000 0.00 0.00 0.00 4.04
3651 5964 2.426522 TGAAACCCATTTGAGCGAGAG 58.573 47.619 0.00 0.00 0.00 3.20
3652 5965 2.224523 TGAAACCCATTTGAGCGAGAGT 60.225 45.455 0.00 0.00 0.00 3.24
3653 5966 3.007506 TGAAACCCATTTGAGCGAGAGTA 59.992 43.478 0.00 0.00 0.00 2.59
3654 5967 2.969628 ACCCATTTGAGCGAGAGTAG 57.030 50.000 0.00 0.00 0.00 2.57
3655 5968 2.180276 ACCCATTTGAGCGAGAGTAGT 58.820 47.619 0.00 0.00 0.00 2.73
3656 5969 3.362706 ACCCATTTGAGCGAGAGTAGTA 58.637 45.455 0.00 0.00 0.00 1.82
3657 5970 3.130693 ACCCATTTGAGCGAGAGTAGTAC 59.869 47.826 0.00 0.00 0.00 2.73
3658 5971 3.381908 CCCATTTGAGCGAGAGTAGTACT 59.618 47.826 1.37 1.37 0.00 2.73
3659 5972 4.579340 CCCATTTGAGCGAGAGTAGTACTA 59.421 45.833 1.88 0.00 0.00 1.82
3660 5973 5.278071 CCCATTTGAGCGAGAGTAGTACTAG 60.278 48.000 1.87 0.00 0.00 2.57
3661 5974 5.278071 CCATTTGAGCGAGAGTAGTACTAGG 60.278 48.000 1.87 0.00 0.00 3.02
3662 5975 4.750021 TTGAGCGAGAGTAGTACTAGGA 57.250 45.455 1.87 0.00 0.00 2.94
3663 5976 4.959560 TGAGCGAGAGTAGTACTAGGAT 57.040 45.455 1.87 0.00 0.00 3.24
3664 5977 4.633175 TGAGCGAGAGTAGTACTAGGATG 58.367 47.826 1.87 0.00 0.00 3.51
3665 5978 3.998341 GAGCGAGAGTAGTACTAGGATGG 59.002 52.174 1.87 0.00 0.00 3.51
3666 5979 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
3667 5980 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
3668 5981 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
3669 5982 4.202336 CGAGAGTAGTACTAGGATGGGTGA 60.202 50.000 1.87 0.00 0.00 4.02
3670 5983 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
3682 5995 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
3683 5996 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
3684 5997 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
3685 5998 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
3686 5999 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
3687 6000 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
3688 6001 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
3689 6002 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
3690 6003 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
3691 6004 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
3692 6005 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
3693 6006 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
3694 6007 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
3695 6008 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95
3696 6009 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
3697 6010 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
3698 6011 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
3699 6012 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
3700 6013 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
3711 6024 6.652205 TGAAAGGGTTTCATATCTAAGGGT 57.348 37.500 0.00 0.00 44.21 4.34
3712 6025 7.039722 TGAAAGGGTTTCATATCTAAGGGTT 57.960 36.000 0.00 0.00 44.21 4.11
3713 6026 6.889722 TGAAAGGGTTTCATATCTAAGGGTTG 59.110 38.462 0.00 0.00 44.21 3.77
3714 6027 6.402981 AAGGGTTTCATATCTAAGGGTTGT 57.597 37.500 0.00 0.00 0.00 3.32
3715 6028 5.755849 AGGGTTTCATATCTAAGGGTTGTG 58.244 41.667 0.00 0.00 0.00 3.33
3716 6029 4.887655 GGGTTTCATATCTAAGGGTTGTGG 59.112 45.833 0.00 0.00 0.00 4.17
3717 6030 5.506708 GGTTTCATATCTAAGGGTTGTGGT 58.493 41.667 0.00 0.00 0.00 4.16
3718 6031 6.353255 GGGTTTCATATCTAAGGGTTGTGGTA 60.353 42.308 0.00 0.00 0.00 3.25
3719 6032 6.766467 GGTTTCATATCTAAGGGTTGTGGTAG 59.234 42.308 0.00 0.00 0.00 3.18
3720 6033 6.494666 TTCATATCTAAGGGTTGTGGTAGG 57.505 41.667 0.00 0.00 0.00 3.18
3721 6034 4.347000 TCATATCTAAGGGTTGTGGTAGGC 59.653 45.833 0.00 0.00 0.00 3.93
3722 6035 2.337359 TCTAAGGGTTGTGGTAGGCT 57.663 50.000 0.00 0.00 0.00 4.58
3723 6036 2.627933 TCTAAGGGTTGTGGTAGGCTT 58.372 47.619 0.00 0.00 0.00 4.35
3724 6037 2.304761 TCTAAGGGTTGTGGTAGGCTTG 59.695 50.000 0.00 0.00 0.00 4.01
3725 6038 0.112412 AAGGGTTGTGGTAGGCTTGG 59.888 55.000 0.00 0.00 0.00 3.61
3726 6039 1.977009 GGGTTGTGGTAGGCTTGGC 60.977 63.158 0.00 0.00 0.00 4.52
3727 6040 2.332654 GGTTGTGGTAGGCTTGGCG 61.333 63.158 0.00 0.00 0.00 5.69
3728 6041 1.302192 GTTGTGGTAGGCTTGGCGA 60.302 57.895 0.00 0.00 0.00 5.54
3729 6042 1.003839 TTGTGGTAGGCTTGGCGAG 60.004 57.895 0.00 0.00 0.00 5.03
3745 6058 1.950472 CGAGCCAACGCAAAAACTAG 58.050 50.000 0.00 0.00 37.52 2.57
3746 6059 1.686464 GAGCCAACGCAAAAACTAGC 58.314 50.000 0.00 0.00 37.52 3.42
3747 6060 0.313987 AGCCAACGCAAAAACTAGCC 59.686 50.000 0.00 0.00 37.52 3.93
3748 6061 0.031449 GCCAACGCAAAAACTAGCCA 59.969 50.000 0.00 0.00 34.03 4.75
3749 6062 1.930371 GCCAACGCAAAAACTAGCCAG 60.930 52.381 0.00 0.00 34.03 4.85
3750 6063 1.336755 CCAACGCAAAAACTAGCCAGT 59.663 47.619 0.00 0.00 36.19 4.00
3751 6064 2.604614 CCAACGCAAAAACTAGCCAGTC 60.605 50.000 0.00 0.00 32.29 3.51
3752 6065 2.256117 ACGCAAAAACTAGCCAGTCT 57.744 45.000 0.00 0.00 32.29 3.24
3753 6066 2.572290 ACGCAAAAACTAGCCAGTCTT 58.428 42.857 0.00 0.00 32.29 3.01
3754 6067 2.949644 ACGCAAAAACTAGCCAGTCTTT 59.050 40.909 0.00 0.00 32.29 2.52
3755 6068 3.380320 ACGCAAAAACTAGCCAGTCTTTT 59.620 39.130 0.00 0.00 32.29 2.27
3756 6069 3.730715 CGCAAAAACTAGCCAGTCTTTTG 59.269 43.478 18.62 18.62 40.70 2.44
3757 6070 4.051237 GCAAAAACTAGCCAGTCTTTTGG 58.949 43.478 21.44 6.97 39.67 3.28
3758 6071 4.620982 CAAAAACTAGCCAGTCTTTTGGG 58.379 43.478 16.80 0.00 38.06 4.12
3760 6073 4.717279 AAACTAGCCAGTCTTTTGGGTA 57.283 40.909 4.17 4.17 46.57 3.69
3761 6074 4.929146 AACTAGCCAGTCTTTTGGGTAT 57.071 40.909 4.61 0.00 46.74 2.73
3762 6075 4.222124 ACTAGCCAGTCTTTTGGGTATG 57.778 45.455 4.61 2.96 46.74 2.39
3763 6076 3.844211 ACTAGCCAGTCTTTTGGGTATGA 59.156 43.478 4.61 0.00 46.74 2.15
3764 6077 3.806949 AGCCAGTCTTTTGGGTATGAA 57.193 42.857 0.00 0.00 46.57 2.57
3765 6078 4.112634 AGCCAGTCTTTTGGGTATGAAA 57.887 40.909 0.00 0.00 46.57 2.69
3766 6079 3.826729 AGCCAGTCTTTTGGGTATGAAAC 59.173 43.478 0.00 0.00 46.57 2.78
3767 6080 5.294122 AGCCAGTCTTTTGGGTATGAAACC 61.294 45.833 0.00 0.00 46.57 3.27
3788 6101 4.073293 CCATTTGGGCGAGAATAGTACT 57.927 45.455 0.00 0.00 0.00 2.73
3789 6102 5.209818 CCATTTGGGCGAGAATAGTACTA 57.790 43.478 4.77 4.77 0.00 1.82
3790 6103 5.230942 CCATTTGGGCGAGAATAGTACTAG 58.769 45.833 8.85 0.00 0.00 2.57
3791 6104 4.931661 TTTGGGCGAGAATAGTACTAGG 57.068 45.455 8.85 0.00 0.00 3.02
3792 6105 3.870538 TGGGCGAGAATAGTACTAGGA 57.129 47.619 8.85 0.00 0.00 2.94
3793 6106 4.383931 TGGGCGAGAATAGTACTAGGAT 57.616 45.455 8.85 0.00 0.00 3.24
3794 6107 4.079970 TGGGCGAGAATAGTACTAGGATG 58.920 47.826 8.85 0.00 0.00 3.51
3795 6108 3.444388 GGGCGAGAATAGTACTAGGATGG 59.556 52.174 8.85 0.00 0.00 3.51
3796 6109 3.444388 GGCGAGAATAGTACTAGGATGGG 59.556 52.174 8.85 0.00 0.00 4.00
3797 6110 4.080687 GCGAGAATAGTACTAGGATGGGT 58.919 47.826 8.85 0.00 0.00 4.51
3798 6111 4.082679 GCGAGAATAGTACTAGGATGGGTG 60.083 50.000 8.85 0.00 0.00 4.61
3799 6112 5.314529 CGAGAATAGTACTAGGATGGGTGA 58.685 45.833 8.85 0.00 0.00 4.02
3800 6113 5.181622 CGAGAATAGTACTAGGATGGGTGAC 59.818 48.000 8.85 0.00 0.00 3.67
3812 6125 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
3813 6126 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
3814 6127 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
3815 6128 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
3816 6129 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
3817 6130 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
3818 6131 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
3819 6132 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
3820 6133 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
3821 6134 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
3822 6135 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
3823 6136 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
3824 6137 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
3825 6138 0.673956 GGGAAGTCCTCGTGAAAGGC 60.674 60.000 0.00 0.00 36.29 4.35
3826 6139 0.321996 GGAAGTCCTCGTGAAAGGCT 59.678 55.000 0.00 0.00 36.29 4.58
3827 6140 1.270893 GGAAGTCCTCGTGAAAGGCTT 60.271 52.381 0.00 0.00 36.28 4.35
3828 6141 2.495084 GAAGTCCTCGTGAAAGGCTTT 58.505 47.619 13.25 13.25 34.80 3.51
3829 6142 2.171341 AGTCCTCGTGAAAGGCTTTC 57.829 50.000 28.71 28.71 40.08 2.62
3830 6143 1.416401 AGTCCTCGTGAAAGGCTTTCA 59.584 47.619 32.85 32.85 46.68 2.69
3845 6158 4.209307 GCTTTCATATCTAGCCTACCCC 57.791 50.000 0.00 0.00 0.00 4.95
3846 6159 3.583086 GCTTTCATATCTAGCCTACCCCA 59.417 47.826 0.00 0.00 0.00 4.96
3847 6160 4.041691 GCTTTCATATCTAGCCTACCCCAA 59.958 45.833 0.00 0.00 0.00 4.12
3848 6161 5.552178 CTTTCATATCTAGCCTACCCCAAC 58.448 45.833 0.00 0.00 0.00 3.77
3849 6162 4.487282 TCATATCTAGCCTACCCCAACT 57.513 45.455 0.00 0.00 0.00 3.16
3850 6163 4.827789 TCATATCTAGCCTACCCCAACTT 58.172 43.478 0.00 0.00 0.00 2.66
3851 6164 4.593206 TCATATCTAGCCTACCCCAACTTG 59.407 45.833 0.00 0.00 0.00 3.16
3852 6165 2.337359 TCTAGCCTACCCCAACTTGT 57.663 50.000 0.00 0.00 0.00 3.16
3853 6166 2.627933 TCTAGCCTACCCCAACTTGTT 58.372 47.619 0.00 0.00 0.00 2.83
3854 6167 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
3855 6168 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
3867 6180 5.213891 CAACTTGTTTGGGATAAAAGGCT 57.786 39.130 0.00 0.00 0.00 4.58
3868 6181 5.610398 CAACTTGTTTGGGATAAAAGGCTT 58.390 37.500 0.00 0.00 0.00 4.35
3869 6182 5.468540 ACTTGTTTGGGATAAAAGGCTTC 57.531 39.130 0.00 0.00 0.00 3.86
3870 6183 4.022329 ACTTGTTTGGGATAAAAGGCTTCG 60.022 41.667 0.00 0.00 0.00 3.79
3871 6184 3.492337 TGTTTGGGATAAAAGGCTTCGT 58.508 40.909 0.00 0.00 0.00 3.85
3872 6185 4.653868 TGTTTGGGATAAAAGGCTTCGTA 58.346 39.130 0.00 0.00 0.00 3.43
3873 6186 5.071370 TGTTTGGGATAAAAGGCTTCGTAA 58.929 37.500 0.00 0.00 0.00 3.18
3874 6187 5.182380 TGTTTGGGATAAAAGGCTTCGTAAG 59.818 40.000 0.00 0.00 0.00 2.34
3875 6188 4.563140 TGGGATAAAAGGCTTCGTAAGT 57.437 40.909 0.00 0.00 39.48 2.24
3876 6189 5.680594 TGGGATAAAAGGCTTCGTAAGTA 57.319 39.130 0.00 0.00 39.48 2.24
3877 6190 6.052405 TGGGATAAAAGGCTTCGTAAGTAA 57.948 37.500 0.00 0.00 39.48 2.24
3878 6191 6.110707 TGGGATAAAAGGCTTCGTAAGTAAG 58.889 40.000 0.00 0.00 39.48 2.34
3879 6192 6.111382 GGGATAAAAGGCTTCGTAAGTAAGT 58.889 40.000 0.00 0.00 39.48 2.24
3880 6193 7.093377 TGGGATAAAAGGCTTCGTAAGTAAGTA 60.093 37.037 0.00 0.00 39.48 2.24
3881 6194 7.437565 GGGATAAAAGGCTTCGTAAGTAAGTAG 59.562 40.741 0.00 0.00 39.48 2.57
3882 6195 7.978414 GGATAAAAGGCTTCGTAAGTAAGTAGT 59.022 37.037 0.00 0.00 39.48 2.73
3885 6198 8.754230 AAAAGGCTTCGTAAGTAAGTAGTAAG 57.246 34.615 0.00 0.00 39.48 2.34
3886 6199 5.889219 AGGCTTCGTAAGTAAGTAGTAAGC 58.111 41.667 0.00 0.00 37.85 3.09
3887 6200 5.416952 AGGCTTCGTAAGTAAGTAGTAAGCA 59.583 40.000 0.00 0.00 39.79 3.91
3888 6201 6.096564 AGGCTTCGTAAGTAAGTAGTAAGCAT 59.903 38.462 0.00 0.00 39.79 3.79
3889 6202 6.198591 GGCTTCGTAAGTAAGTAGTAAGCATG 59.801 42.308 0.00 0.00 39.79 4.06
4362 6675 2.158711 TGGAGATGCATTGCCCTTCTAG 60.159 50.000 14.10 0.00 0.00 2.43
4437 6750 1.551430 CCCATTCACATGTGGCACATT 59.449 47.619 29.57 17.88 44.52 2.71
4469 6824 6.310224 GCCATTTTTCATATGGTTGTGTGTAC 59.690 38.462 2.13 0.00 43.65 2.90
4708 7063 7.992608 TCTTTCTGCTGATAATATTGCCTGTTA 59.007 33.333 0.00 0.00 0.00 2.41
4788 7143 8.774586 GTCACCATGATATATTTACAACAGGAC 58.225 37.037 0.00 0.00 0.00 3.85
4800 7155 2.113052 ACAACAGGACCCTCCCTTACTA 59.887 50.000 0.00 0.00 37.19 1.82
5132 7497 8.956426 CAAAACAGGATTTTGCTAACCTCTATA 58.044 33.333 0.00 0.00 33.38 1.31
5186 7563 5.743026 TGAAGTTTGCAACTCGTGATAAA 57.257 34.783 0.00 0.00 41.91 1.40
5258 7647 3.627577 TGTTGAAGTTCTCTCCTGCAAAC 59.372 43.478 4.17 0.00 0.00 2.93
5367 7756 4.599041 ACATTGTAACTGGTATGTGCCAT 58.401 39.130 0.00 0.00 37.96 4.40
5401 7790 1.355381 TGCATTGGAGTGAAGTGGGAT 59.645 47.619 0.00 0.00 0.00 3.85
5417 7806 4.130118 GTGGGATCCAGTACATGATTGTC 58.870 47.826 15.23 0.00 33.73 3.18
5418 7807 3.181466 TGGGATCCAGTACATGATTGTCG 60.181 47.826 15.23 0.00 37.28 4.35
5539 7928 5.957842 TGTTAGCTAACACCATTTGGAAG 57.042 39.130 30.81 0.00 40.93 3.46
5668 8057 0.986019 TGTGGACTGTGACCCCTGTT 60.986 55.000 0.00 0.00 0.00 3.16
5676 8065 0.472471 GTGACCCCTGTTGTGAAGGA 59.528 55.000 0.00 0.00 36.91 3.36
5758 8147 4.521256 GTGTACCTTCCACTTTATTTGGCA 59.479 41.667 0.00 0.00 33.71 4.92
5861 8250 0.465278 GCTTCTGCTTGGATCCCTCC 60.465 60.000 9.90 0.00 37.91 4.30
5882 8276 6.704050 CCTCCGTTGGTTTTATGAATGTTTTT 59.296 34.615 0.00 0.00 0.00 1.94
5969 8366 2.094675 GCACTGTGCCATCTTGGTATT 58.905 47.619 21.78 0.00 40.46 1.89
5994 8391 6.111382 TGATCAAGATCAACTGAGGATTCAC 58.889 40.000 10.16 0.00 44.14 3.18
6025 8422 2.713863 TTCGTGGGGTACAGTTTTGT 57.286 45.000 0.00 0.00 41.39 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.033601 TTCATGTTCCCCAATCCCGG 60.034 55.000 0.00 0.00 0.00 5.73
116 117 1.372501 AGCTAGGGTTTGGTGTCCAT 58.627 50.000 0.00 0.00 31.53 3.41
163 164 1.971357 ACTCATCCAAGACAAGTCGGT 59.029 47.619 0.00 0.00 34.09 4.69
175 176 4.156556 GCAAGTCATAGCAAAACTCATCCA 59.843 41.667 0.00 0.00 0.00 3.41
176 177 4.156556 TGCAAGTCATAGCAAAACTCATCC 59.843 41.667 0.00 0.00 37.90 3.51
199 200 2.936032 GGGGAGGGGTGTTGAGCT 60.936 66.667 0.00 0.00 0.00 4.09
217 218 1.536662 AGAGGCGGAGGAAAGGTGT 60.537 57.895 0.00 0.00 0.00 4.16
252 253 3.069443 GTCTAAGATGGAGAGAGCAAGGG 59.931 52.174 0.00 0.00 0.00 3.95
270 271 4.404394 TGACCAAGAGTGTGAAGTTGTCTA 59.596 41.667 0.00 0.00 0.00 2.59
289 290 2.437413 GATCAGGTGGAAGGTTTGACC 58.563 52.381 0.00 0.00 38.99 4.02
329 330 1.008538 GGCTGTCTGTTTGTTGGCG 60.009 57.895 0.00 0.00 0.00 5.69
334 335 2.038387 AACTTCGGCTGTCTGTTTGT 57.962 45.000 0.00 0.00 0.00 2.83
345 346 2.277969 GCTCTAAACCCTAACTTCGGC 58.722 52.381 0.00 0.00 0.00 5.54
352 353 2.290071 GCACCACTGCTCTAAACCCTAA 60.290 50.000 0.00 0.00 40.63 2.69
360 361 0.249868 GTGTGTGCACCACTGCTCTA 60.250 55.000 23.22 0.00 44.57 2.43
362 363 2.885676 CGTGTGTGCACCACTGCTC 61.886 63.158 25.75 8.86 44.57 4.26
392 411 5.011125 CCACTAGTCCATATCGTCCTTTCAT 59.989 44.000 0.00 0.00 0.00 2.57
411 430 5.417811 CGAGTCTACAGTCTAGTTCCACTA 58.582 45.833 0.00 0.00 0.00 2.74
455 474 1.786937 AGGGTTTTGGTGTTGCATCA 58.213 45.000 0.00 0.00 0.00 3.07
485 504 1.517694 TAGGCGATTTCGTGGCGAC 60.518 57.895 1.55 0.00 42.22 5.19
526 546 4.595538 GTCGTGTGGGCCGTGTGA 62.596 66.667 0.00 0.00 0.00 3.58
543 563 0.179145 ATCGTAGCAAGGTTCGTCCG 60.179 55.000 0.00 0.00 41.99 4.79
548 2731 3.961182 TCATACGATCGTAGCAAGGTTC 58.039 45.455 29.63 0.00 33.77 3.62
708 2932 4.023707 GCTGCGGTGATCATAAATAAAGCT 60.024 41.667 0.00 0.00 0.00 3.74
798 3022 2.681778 CTGTGGCCTCTCCGGACT 60.682 66.667 0.00 0.00 43.44 3.85
913 3137 1.003573 CCCTCTCCTTGCTACCCCT 59.996 63.158 0.00 0.00 0.00 4.79
998 3228 1.621317 TCTTGTTGCGGTACTCCATCA 59.379 47.619 0.00 0.00 0.00 3.07
1100 3337 2.265683 CTAAAACTCGGTTCCTACGGC 58.734 52.381 0.00 0.00 0.00 5.68
1130 3367 0.689745 TGAATCTAGGACCCCCGTGG 60.690 60.000 0.00 0.00 41.37 4.94
1186 3423 4.429212 TCGATGACCCCGTGCGTG 62.429 66.667 0.00 0.00 0.00 5.34
1187 3424 4.129737 CTCGATGACCCCGTGCGT 62.130 66.667 0.00 0.00 0.00 5.24
1188 3425 2.663630 CTACTCGATGACCCCGTGCG 62.664 65.000 0.00 0.00 0.00 5.34
1189 3426 1.065928 CTACTCGATGACCCCGTGC 59.934 63.158 0.00 0.00 0.00 5.34
1315 3552 3.539604 CCAGTCCTAGAGCATCCAAAAG 58.460 50.000 0.00 0.00 33.66 2.27
1340 3577 9.235537 CTCATCAATAGAGATATCGTGCTATTG 57.764 37.037 27.93 27.93 45.70 1.90
1617 3854 2.845967 GCGTTGACAGTTCACAAACTTG 59.154 45.455 0.00 0.00 43.28 3.16
2102 4341 5.542779 ACTCAGAAGTAAGGCTTACACAAG 58.457 41.667 32.48 25.35 37.59 3.16
2133 4372 6.347888 GGTGCACTTTAAGTTATTCGCTGTTA 60.348 38.462 17.98 0.00 0.00 2.41
2166 4405 6.016555 ACAATTTAGTTAGCACCATTTCCCT 58.983 36.000 0.00 0.00 0.00 4.20
2173 4412 7.446931 TCAGATCAAACAATTTAGTTAGCACCA 59.553 33.333 0.00 0.00 0.00 4.17
2221 4460 7.550906 AGAGAAGATGCTATGTTTAAAGACCAC 59.449 37.037 0.00 0.00 0.00 4.16
2285 4525 6.827251 CCCATGTTGATATCTATAGCAGCAAT 59.173 38.462 8.49 0.00 41.76 3.56
2404 4644 6.319141 AGGCATGAAAGTAAGAGAACAAAC 57.681 37.500 0.00 0.00 0.00 2.93
2674 4914 7.663043 TTGGTTGATACCCTTTAAAAACACT 57.337 32.000 0.00 0.00 44.35 3.55
3150 5462 8.470040 TGCATTTCTCAATTTCTCTTTAATGC 57.530 30.769 0.00 0.00 43.24 3.56
3191 5503 3.712091 ACCCGAAGTAGCGAGATTTAG 57.288 47.619 0.00 0.00 0.00 1.85
3214 5526 6.153340 ACAATACTGATAACTGGCAAGCAAAT 59.847 34.615 0.00 0.00 0.00 2.32
3303 5615 4.747810 CCATTTGGCACTTAGGAAATGAC 58.252 43.478 7.25 0.00 37.80 3.06
3514 5827 4.822896 ACATAGGCGGAGTTGTTAAAAACA 59.177 37.500 11.11 0.00 40.21 2.83
3515 5828 5.180680 AGACATAGGCGGAGTTGTTAAAAAC 59.819 40.000 0.00 0.00 0.00 2.43
3516 5829 5.310451 AGACATAGGCGGAGTTGTTAAAAA 58.690 37.500 0.00 0.00 0.00 1.94
3517 5830 4.901868 AGACATAGGCGGAGTTGTTAAAA 58.098 39.130 0.00 0.00 0.00 1.52
3518 5831 4.546829 AGACATAGGCGGAGTTGTTAAA 57.453 40.909 0.00 0.00 0.00 1.52
3519 5832 4.222145 AGAAGACATAGGCGGAGTTGTTAA 59.778 41.667 0.00 0.00 0.00 2.01
3520 5833 3.767673 AGAAGACATAGGCGGAGTTGTTA 59.232 43.478 0.00 0.00 0.00 2.41
3521 5834 2.567615 AGAAGACATAGGCGGAGTTGTT 59.432 45.455 0.00 0.00 0.00 2.83
3522 5835 2.180276 AGAAGACATAGGCGGAGTTGT 58.820 47.619 0.00 0.00 0.00 3.32
3523 5836 2.969628 AGAAGACATAGGCGGAGTTG 57.030 50.000 0.00 0.00 0.00 3.16
3524 5837 2.959707 CCTAGAAGACATAGGCGGAGTT 59.040 50.000 0.00 0.00 33.76 3.01
3525 5838 2.588620 CCTAGAAGACATAGGCGGAGT 58.411 52.381 0.00 0.00 33.76 3.85
3531 5844 4.464069 GGCTATGCCTAGAAGACATAGG 57.536 50.000 16.76 0.00 46.69 2.57
3544 5857 2.203209 CTTGGGACCGGCTATGCC 60.203 66.667 0.00 0.00 46.75 4.40
3545 5858 2.902343 GCTTGGGACCGGCTATGC 60.902 66.667 0.00 0.00 0.00 3.14
3546 5859 2.203209 GGCTTGGGACCGGCTATG 60.203 66.667 0.00 0.00 0.00 2.23
3547 5860 3.489513 GGGCTTGGGACCGGCTAT 61.490 66.667 0.00 0.00 0.00 2.97
3557 5870 1.077716 CTCCTTTACCCGGGCTTGG 60.078 63.158 24.08 17.99 0.00 3.61
3558 5871 1.077716 CCTCCTTTACCCGGGCTTG 60.078 63.158 24.08 8.51 0.00 4.01
3559 5872 1.229723 TCCTCCTTTACCCGGGCTT 60.230 57.895 24.08 4.08 0.00 4.35
3560 5873 1.689582 CTCCTCCTTTACCCGGGCT 60.690 63.158 24.08 10.93 0.00 5.19
3561 5874 2.743179 CCTCCTCCTTTACCCGGGC 61.743 68.421 24.08 0.00 0.00 6.13
3562 5875 2.070650 CCCTCCTCCTTTACCCGGG 61.071 68.421 22.25 22.25 0.00 5.73
3563 5876 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
3564 5877 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
3565 5878 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
3566 5879 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
3567 5880 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
3568 5881 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
3569 5882 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
3570 5883 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
3571 5884 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
3572 5885 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
3573 5886 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
3574 5887 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
3575 5888 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
3576 5889 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
3577 5890 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
3578 5891 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
3579 5892 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
3580 5893 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
3581 5894 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
3582 5895 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
3583 5896 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
3593 5906 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
3594 5907 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
3595 5908 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
3596 5909 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
3597 5910 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
3598 5911 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
3599 5912 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
3600 5913 3.187842 GGACTGGCTAGTTTTTACGTTGG 59.812 47.826 3.47 0.00 37.25 3.77
3601 5914 3.187842 GGGACTGGCTAGTTTTTACGTTG 59.812 47.826 3.47 0.00 37.25 4.10
3602 5915 3.181452 TGGGACTGGCTAGTTTTTACGTT 60.181 43.478 3.47 0.00 37.25 3.99
3603 5916 2.369532 TGGGACTGGCTAGTTTTTACGT 59.630 45.455 3.47 0.00 37.25 3.57
3604 5917 3.048337 TGGGACTGGCTAGTTTTTACG 57.952 47.619 3.47 0.00 37.25 3.18
3605 5918 3.694566 CCATGGGACTGGCTAGTTTTTAC 59.305 47.826 3.47 0.00 37.25 2.01
3606 5919 3.308832 CCCATGGGACTGGCTAGTTTTTA 60.309 47.826 28.27 0.00 37.25 1.52
3607 5920 2.557452 CCCATGGGACTGGCTAGTTTTT 60.557 50.000 28.27 0.00 37.25 1.94
3608 5921 1.005924 CCCATGGGACTGGCTAGTTTT 59.994 52.381 28.27 0.00 37.25 2.43
3609 5922 0.625849 CCCATGGGACTGGCTAGTTT 59.374 55.000 28.27 0.00 37.25 2.66
3610 5923 0.550147 ACCCATGGGACTGGCTAGTT 60.550 55.000 38.07 7.69 37.25 2.24
3611 5924 0.341961 TACCCATGGGACTGGCTAGT 59.658 55.000 38.07 13.98 40.66 2.57
3612 5925 1.349026 CATACCCATGGGACTGGCTAG 59.651 57.143 38.07 13.17 38.96 3.42
3613 5926 1.061735 TCATACCCATGGGACTGGCTA 60.062 52.381 38.07 18.16 38.96 3.93
3614 5927 0.327480 TCATACCCATGGGACTGGCT 60.327 55.000 38.07 16.38 38.96 4.75
3615 5928 0.550914 TTCATACCCATGGGACTGGC 59.449 55.000 38.07 0.00 38.96 4.85
3616 5929 2.654863 GTTTCATACCCATGGGACTGG 58.345 52.381 38.07 21.65 38.96 4.00
3617 5930 2.654863 GGTTTCATACCCATGGGACTG 58.345 52.381 38.07 29.36 41.43 3.51
3627 5940 3.013921 TCGCTCAAATGGGTTTCATACC 58.986 45.455 0.00 0.00 46.99 2.73
3628 5941 3.938963 TCTCGCTCAAATGGGTTTCATAC 59.061 43.478 0.00 0.00 34.44 2.39
3629 5942 4.191544 CTCTCGCTCAAATGGGTTTCATA 58.808 43.478 0.00 0.00 34.44 2.15
3630 5943 3.012518 CTCTCGCTCAAATGGGTTTCAT 58.987 45.455 0.00 0.00 37.79 2.57
3631 5944 2.224523 ACTCTCGCTCAAATGGGTTTCA 60.225 45.455 0.00 0.00 0.00 2.69
3632 5945 2.427506 ACTCTCGCTCAAATGGGTTTC 58.572 47.619 0.00 0.00 0.00 2.78
3633 5946 2.568623 ACTCTCGCTCAAATGGGTTT 57.431 45.000 0.00 0.00 0.00 3.27
3634 5947 2.567615 ACTACTCTCGCTCAAATGGGTT 59.432 45.455 0.00 0.00 0.00 4.11
3635 5948 2.180276 ACTACTCTCGCTCAAATGGGT 58.820 47.619 0.00 0.00 0.00 4.51
3636 5949 2.969628 ACTACTCTCGCTCAAATGGG 57.030 50.000 0.00 0.00 0.00 4.00
3637 5950 4.640789 AGTACTACTCTCGCTCAAATGG 57.359 45.455 0.00 0.00 0.00 3.16
3638 5951 5.527951 TCCTAGTACTACTCTCGCTCAAATG 59.472 44.000 0.00 0.00 0.00 2.32
3639 5952 5.682659 TCCTAGTACTACTCTCGCTCAAAT 58.317 41.667 0.00 0.00 0.00 2.32
3640 5953 5.095145 TCCTAGTACTACTCTCGCTCAAA 57.905 43.478 0.00 0.00 0.00 2.69
3641 5954 4.750021 TCCTAGTACTACTCTCGCTCAA 57.250 45.455 0.00 0.00 0.00 3.02
3642 5955 4.503469 CCATCCTAGTACTACTCTCGCTCA 60.503 50.000 0.00 0.00 0.00 4.26
3643 5956 3.998341 CCATCCTAGTACTACTCTCGCTC 59.002 52.174 0.00 0.00 0.00 5.03
3644 5957 3.244630 CCCATCCTAGTACTACTCTCGCT 60.245 52.174 0.00 0.00 0.00 4.93
3645 5958 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
3646 5959 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
3647 5960 5.065235 GTCACCCATCCTAGTACTACTCTC 58.935 50.000 0.00 0.00 0.00 3.20
3648 5961 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
3649 5962 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
3650 5963 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
3651 5964 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
3652 5965 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
3653 5966 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
3654 5967 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
3655 5968 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
3656 5969 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
3657 5970 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
3658 5971 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
3659 5972 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
3660 5973 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
3661 5974 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
3662 5975 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
3663 5976 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
3664 5977 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
3665 5978 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
3668 5981 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
3669 5982 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
3670 5983 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
3671 5984 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
3672 5985 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
3673 5986 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
3674 5987 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
3675 5988 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
3676 5989 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.000 0.00 0.00 39.25 3.97
3677 5990 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
3678 5991 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
3679 5992 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
3680 5993 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
3681 5994 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
3689 6002 6.890268 ACAACCCTTAGATATGAAACCCTTTC 59.110 38.462 0.00 0.00 40.08 2.62
3690 6003 6.663523 CACAACCCTTAGATATGAAACCCTTT 59.336 38.462 0.00 0.00 0.00 3.11
3691 6004 6.187682 CACAACCCTTAGATATGAAACCCTT 58.812 40.000 0.00 0.00 0.00 3.95
3692 6005 5.340027 CCACAACCCTTAGATATGAAACCCT 60.340 44.000 0.00 0.00 0.00 4.34
3693 6006 4.887655 CCACAACCCTTAGATATGAAACCC 59.112 45.833 0.00 0.00 0.00 4.11
3694 6007 5.506708 ACCACAACCCTTAGATATGAAACC 58.493 41.667 0.00 0.00 0.00 3.27
3695 6008 6.766467 CCTACCACAACCCTTAGATATGAAAC 59.234 42.308 0.00 0.00 0.00 2.78
3696 6009 6.634039 GCCTACCACAACCCTTAGATATGAAA 60.634 42.308 0.00 0.00 0.00 2.69
3697 6010 5.163237 GCCTACCACAACCCTTAGATATGAA 60.163 44.000 0.00 0.00 0.00 2.57
3698 6011 4.347000 GCCTACCACAACCCTTAGATATGA 59.653 45.833 0.00 0.00 0.00 2.15
3699 6012 4.348168 AGCCTACCACAACCCTTAGATATG 59.652 45.833 0.00 0.00 0.00 1.78
3700 6013 4.567857 AGCCTACCACAACCCTTAGATAT 58.432 43.478 0.00 0.00 0.00 1.63
3701 6014 4.003584 AGCCTACCACAACCCTTAGATA 57.996 45.455 0.00 0.00 0.00 1.98
3702 6015 2.846950 AGCCTACCACAACCCTTAGAT 58.153 47.619 0.00 0.00 0.00 1.98
3703 6016 2.304761 CAAGCCTACCACAACCCTTAGA 59.695 50.000 0.00 0.00 0.00 2.10
3704 6017 2.618045 CCAAGCCTACCACAACCCTTAG 60.618 54.545 0.00 0.00 0.00 2.18
3705 6018 1.353022 CCAAGCCTACCACAACCCTTA 59.647 52.381 0.00 0.00 0.00 2.69
3706 6019 0.112412 CCAAGCCTACCACAACCCTT 59.888 55.000 0.00 0.00 0.00 3.95
3707 6020 1.767692 CCAAGCCTACCACAACCCT 59.232 57.895 0.00 0.00 0.00 4.34
3708 6021 1.977009 GCCAAGCCTACCACAACCC 60.977 63.158 0.00 0.00 0.00 4.11
3709 6022 2.332654 CGCCAAGCCTACCACAACC 61.333 63.158 0.00 0.00 0.00 3.77
3710 6023 1.298859 CTCGCCAAGCCTACCACAAC 61.299 60.000 0.00 0.00 0.00 3.32
3711 6024 1.003839 CTCGCCAAGCCTACCACAA 60.004 57.895 0.00 0.00 0.00 3.33
3712 6025 2.662596 CTCGCCAAGCCTACCACA 59.337 61.111 0.00 0.00 0.00 4.17
3713 6026 2.820037 GCTCGCCAAGCCTACCAC 60.820 66.667 0.00 0.00 45.92 4.16
3726 6039 1.950472 CTAGTTTTTGCGTTGGCTCG 58.050 50.000 0.00 0.00 40.82 5.03
3727 6040 1.666023 GGCTAGTTTTTGCGTTGGCTC 60.666 52.381 0.00 0.00 40.82 4.70
3728 6041 0.313987 GGCTAGTTTTTGCGTTGGCT 59.686 50.000 0.00 0.00 40.82 4.75
3729 6042 0.031449 TGGCTAGTTTTTGCGTTGGC 59.969 50.000 0.00 0.00 40.52 4.52
3730 6043 1.336755 ACTGGCTAGTTTTTGCGTTGG 59.663 47.619 0.00 0.00 31.66 3.77
3731 6044 2.290641 AGACTGGCTAGTTTTTGCGTTG 59.709 45.455 3.47 0.00 37.25 4.10
3732 6045 2.572290 AGACTGGCTAGTTTTTGCGTT 58.428 42.857 3.47 0.00 37.25 4.84
3733 6046 2.256117 AGACTGGCTAGTTTTTGCGT 57.744 45.000 3.47 0.00 37.25 5.24
3734 6047 3.626028 AAAGACTGGCTAGTTTTTGCG 57.374 42.857 16.43 0.00 39.11 4.85
3735 6048 4.051237 CCAAAAGACTGGCTAGTTTTTGC 58.949 43.478 26.44 10.03 39.50 3.68
3736 6049 4.099419 ACCCAAAAGACTGGCTAGTTTTTG 59.901 41.667 25.70 25.70 39.50 2.44
3737 6050 4.286707 ACCCAAAAGACTGGCTAGTTTTT 58.713 39.130 12.22 12.22 41.44 1.94
3738 6051 3.910989 ACCCAAAAGACTGGCTAGTTTT 58.089 40.909 3.47 1.40 37.25 2.43
3739 6052 3.595190 ACCCAAAAGACTGGCTAGTTT 57.405 42.857 3.47 0.00 37.25 2.66
3740 6053 4.288626 TCATACCCAAAAGACTGGCTAGTT 59.711 41.667 3.47 0.00 37.25 2.24
3741 6054 3.844211 TCATACCCAAAAGACTGGCTAGT 59.156 43.478 0.69 0.69 40.66 2.57
3742 6055 4.487714 TCATACCCAAAAGACTGGCTAG 57.512 45.455 0.00 0.00 34.88 3.42
3743 6056 4.919774 TTCATACCCAAAAGACTGGCTA 57.080 40.909 0.00 0.00 34.88 3.93
3744 6057 3.806949 TTCATACCCAAAAGACTGGCT 57.193 42.857 0.00 0.00 34.88 4.75
3745 6058 3.056821 GGTTTCATACCCAAAAGACTGGC 60.057 47.826 0.00 0.00 41.43 4.85
3746 6059 4.783764 GGTTTCATACCCAAAAGACTGG 57.216 45.455 0.00 0.00 41.43 4.00
3767 6080 4.073293 AGTACTATTCTCGCCCAAATGG 57.927 45.455 0.00 0.00 37.09 3.16
3768 6081 5.010719 TCCTAGTACTATTCTCGCCCAAATG 59.989 44.000 2.33 0.00 0.00 2.32
3769 6082 5.145564 TCCTAGTACTATTCTCGCCCAAAT 58.854 41.667 2.33 0.00 0.00 2.32
3770 6083 4.539726 TCCTAGTACTATTCTCGCCCAAA 58.460 43.478 2.33 0.00 0.00 3.28
3771 6084 4.174704 TCCTAGTACTATTCTCGCCCAA 57.825 45.455 2.33 0.00 0.00 4.12
3772 6085 3.870538 TCCTAGTACTATTCTCGCCCA 57.129 47.619 2.33 0.00 0.00 5.36
3773 6086 3.444388 CCATCCTAGTACTATTCTCGCCC 59.556 52.174 2.33 0.00 0.00 6.13
3774 6087 3.444388 CCCATCCTAGTACTATTCTCGCC 59.556 52.174 2.33 0.00 0.00 5.54
3775 6088 4.080687 ACCCATCCTAGTACTATTCTCGC 58.919 47.826 2.33 0.00 0.00 5.03
3776 6089 5.181622 GTCACCCATCCTAGTACTATTCTCG 59.818 48.000 2.33 0.00 0.00 4.04
3777 6090 5.477637 GGTCACCCATCCTAGTACTATTCTC 59.522 48.000 2.33 0.00 0.00 2.87
3778 6091 5.136392 AGGTCACCCATCCTAGTACTATTCT 59.864 44.000 2.33 0.00 31.66 2.40
3779 6092 5.395611 AGGTCACCCATCCTAGTACTATTC 58.604 45.833 2.33 0.00 31.66 1.75
3780 6093 5.395611 GAGGTCACCCATCCTAGTACTATT 58.604 45.833 2.33 0.00 33.83 1.73
3781 6094 4.202695 GGAGGTCACCCATCCTAGTACTAT 60.203 50.000 2.33 0.00 33.83 2.12
3782 6095 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
3783 6096 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
3784 6097 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
3785 6098 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
3786 6099 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
3787 6100 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
3788 6101 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
3789 6102 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
3790 6103 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
3791 6104 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
3792 6105 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
3793 6106 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
3794 6107 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
3795 6108 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
3798 6111 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
3799 6112 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
3800 6113 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
3801 6114 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
3802 6115 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
3803 6116 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
3804 6117 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
3805 6118 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
3806 6119 0.673956 GCCTTTCACGAGGACTTCCC 60.674 60.000 0.00 0.00 39.25 3.97
3807 6120 0.321996 AGCCTTTCACGAGGACTTCC 59.678 55.000 0.00 0.00 39.25 3.46
3808 6121 2.171341 AAGCCTTTCACGAGGACTTC 57.829 50.000 0.00 0.00 39.25 3.01
3809 6122 2.158813 TGAAAGCCTTTCACGAGGACTT 60.159 45.455 15.70 0.00 44.21 3.01
3810 6123 1.416401 TGAAAGCCTTTCACGAGGACT 59.584 47.619 15.70 0.00 44.21 3.85
3811 6124 1.878953 TGAAAGCCTTTCACGAGGAC 58.121 50.000 15.70 0.00 44.21 3.85
3824 6137 3.583086 TGGGGTAGGCTAGATATGAAAGC 59.417 47.826 0.00 0.00 35.47 3.51
3825 6138 5.308237 AGTTGGGGTAGGCTAGATATGAAAG 59.692 44.000 0.00 0.00 0.00 2.62
3826 6139 5.224441 AGTTGGGGTAGGCTAGATATGAAA 58.776 41.667 0.00 0.00 0.00 2.69
3827 6140 4.827789 AGTTGGGGTAGGCTAGATATGAA 58.172 43.478 0.00 0.00 0.00 2.57
3828 6141 4.487282 AGTTGGGGTAGGCTAGATATGA 57.513 45.455 0.00 0.00 0.00 2.15
3829 6142 4.348168 ACAAGTTGGGGTAGGCTAGATATG 59.652 45.833 7.96 0.00 0.00 1.78
3830 6143 4.567857 ACAAGTTGGGGTAGGCTAGATAT 58.432 43.478 7.96 0.00 0.00 1.63
3831 6144 4.003584 ACAAGTTGGGGTAGGCTAGATA 57.996 45.455 7.96 0.00 0.00 1.98
3832 6145 2.846950 ACAAGTTGGGGTAGGCTAGAT 58.153 47.619 7.96 0.00 0.00 1.98
3833 6146 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
3834 6147 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
3835 6148 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
3836 6149 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
3845 6158 5.213891 AGCCTTTTATCCCAAACAAGTTG 57.786 39.130 0.00 0.00 36.94 3.16
3846 6159 5.508994 CGAAGCCTTTTATCCCAAACAAGTT 60.509 40.000 0.00 0.00 0.00 2.66
3847 6160 4.022329 CGAAGCCTTTTATCCCAAACAAGT 60.022 41.667 0.00 0.00 0.00 3.16
3848 6161 4.022329 ACGAAGCCTTTTATCCCAAACAAG 60.022 41.667 0.00 0.00 0.00 3.16
3849 6162 3.892588 ACGAAGCCTTTTATCCCAAACAA 59.107 39.130 0.00 0.00 0.00 2.83
3850 6163 3.492337 ACGAAGCCTTTTATCCCAAACA 58.508 40.909 0.00 0.00 0.00 2.83
3851 6164 5.182570 ACTTACGAAGCCTTTTATCCCAAAC 59.817 40.000 0.00 0.00 0.00 2.93
3852 6165 5.318630 ACTTACGAAGCCTTTTATCCCAAA 58.681 37.500 0.00 0.00 0.00 3.28
3853 6166 4.913784 ACTTACGAAGCCTTTTATCCCAA 58.086 39.130 0.00 0.00 0.00 4.12
3854 6167 4.563140 ACTTACGAAGCCTTTTATCCCA 57.437 40.909 0.00 0.00 0.00 4.37
3855 6168 6.111382 ACTTACTTACGAAGCCTTTTATCCC 58.889 40.000 0.00 0.00 0.00 3.85
3856 6169 7.978414 ACTACTTACTTACGAAGCCTTTTATCC 59.022 37.037 0.00 0.00 0.00 2.59
3857 6170 8.923609 ACTACTTACTTACGAAGCCTTTTATC 57.076 34.615 0.00 0.00 0.00 1.75
3859 6172 9.846248 CTTACTACTTACTTACGAAGCCTTTTA 57.154 33.333 0.00 0.00 0.00 1.52
3860 6173 7.330454 GCTTACTACTTACTTACGAAGCCTTTT 59.670 37.037 0.00 0.00 33.56 2.27
3861 6174 6.810676 GCTTACTACTTACTTACGAAGCCTTT 59.189 38.462 0.00 0.00 33.56 3.11
3862 6175 6.071728 TGCTTACTACTTACTTACGAAGCCTT 60.072 38.462 0.00 0.00 37.78 4.35
3863 6176 5.416952 TGCTTACTACTTACTTACGAAGCCT 59.583 40.000 0.00 0.00 37.78 4.58
3864 6177 5.644644 TGCTTACTACTTACTTACGAAGCC 58.355 41.667 0.00 0.00 37.78 4.35
3865 6178 6.750963 ACATGCTTACTACTTACTTACGAAGC 59.249 38.462 0.00 0.00 38.77 3.86
3866 6179 8.584600 CAACATGCTTACTACTTACTTACGAAG 58.415 37.037 0.00 0.00 0.00 3.79
3867 6180 8.084073 ACAACATGCTTACTACTTACTTACGAA 58.916 33.333 0.00 0.00 0.00 3.85
3868 6181 7.596494 ACAACATGCTTACTACTTACTTACGA 58.404 34.615 0.00 0.00 0.00 3.43
3869 6182 7.807687 ACAACATGCTTACTACTTACTTACG 57.192 36.000 0.00 0.00 0.00 3.18
3912 6225 7.550906 GCACCTAGAAGTCAAAGTAATCAAGAT 59.449 37.037 0.00 0.00 0.00 2.40
4362 6675 3.244457 GGCAGTATTATCCACAGGTACCC 60.244 52.174 8.74 0.00 0.00 3.69
4369 6682 7.015098 CCATAAATTTGGGCAGTATTATCCACA 59.985 37.037 0.00 0.00 32.80 4.17
4437 6750 6.795144 ACCATATGAAAAATGGCATCTTGA 57.205 33.333 3.65 0.00 46.63 3.02
4469 6824 2.076100 TGACACGAATAGCTGCCAAAG 58.924 47.619 0.00 0.00 0.00 2.77
4708 7063 1.838715 AGCCATGTCAGATGAGCTCTT 59.161 47.619 16.19 8.82 29.16 2.85
4738 7093 9.274206 GACATAAAACCAACTAATCTATCTCCC 57.726 37.037 0.00 0.00 0.00 4.30
4788 7143 6.844917 TCTTTTAAGGAGATAGTAAGGGAGGG 59.155 42.308 0.00 0.00 0.00 4.30
5132 7497 8.383175 ACGAAATTATATGAATACCTGGGTCAT 58.617 33.333 12.52 12.52 36.08 3.06
5367 7756 5.122707 TCCAATGCATAACCCATACAGAA 57.877 39.130 0.00 0.00 0.00 3.02
5401 7790 3.973206 AACCGACAATCATGTACTGGA 57.027 42.857 0.00 0.00 40.74 3.86
5668 8057 3.907474 TGGGATAAGAGTTGTCCTTCACA 59.093 43.478 2.88 0.00 40.46 3.58
5676 8065 5.946377 GTCCATCTTTTGGGATAAGAGTTGT 59.054 40.000 0.00 0.00 46.45 3.32
5758 8147 3.144506 CAGGACTTCAGAAACACAGCAT 58.855 45.455 0.00 0.00 0.00 3.79
5882 8276 2.237143 ACTCATGCAAAGATCTCCGGAA 59.763 45.455 5.23 0.00 0.00 4.30
5969 8366 6.596888 GTGAATCCTCAGTTGATCTTGATCAA 59.403 38.462 18.67 18.67 33.59 2.57
5994 8391 2.218603 CCCCACGAAATAAGGAATCCG 58.781 52.381 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.