Multiple sequence alignment - TraesCS2B01G388700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G388700 chr2B 100.000 5330 0 0 1 5330 551570552 551565223 0.000000e+00 9843.0
1 TraesCS2B01G388700 chr2B 83.869 1525 136 54 2997 4480 551535347 551533892 0.000000e+00 1352.0
2 TraesCS2B01G388700 chr2B 91.945 509 32 7 958 1466 551538523 551538024 0.000000e+00 704.0
3 TraesCS2B01G388700 chr2B 97.080 137 3 1 2553 2688 174798280 174798416 4.150000e-56 230.0
4 TraesCS2B01G388700 chr2B 97.744 133 3 0 2552 2684 392896842 392896974 4.150000e-56 230.0
5 TraesCS2B01G388700 chr2B 95.082 122 4 1 1697 1816 784769355 784769234 1.960000e-44 191.0
6 TraesCS2B01G388700 chr2B 90.698 129 12 0 1698 1826 2233850 2233722 7.100000e-39 172.0
7 TraesCS2B01G388700 chr2B 89.474 76 7 1 1453 1527 551537878 551537803 1.580000e-15 95.3
8 TraesCS2B01G388700 chr2B 86.842 76 9 1 2122 2197 6259496 6259570 3.420000e-12 84.2
9 TraesCS2B01G388700 chr2D 90.740 1717 113 30 9 1703 472448804 472447112 0.000000e+00 2248.0
10 TraesCS2B01G388700 chr2D 87.624 905 64 21 4320 5198 472444135 472443253 0.000000e+00 1007.0
11 TraesCS2B01G388700 chr2D 85.969 841 67 22 4524 5330 472230435 472229612 0.000000e+00 852.0
12 TraesCS2B01G388700 chr2D 92.857 588 32 8 3747 4330 472445271 472444690 0.000000e+00 845.0
13 TraesCS2B01G388700 chr2D 86.199 826 57 30 2720 3528 472446094 472445309 0.000000e+00 841.0
14 TraesCS2B01G388700 chr2D 85.917 774 65 23 956 1703 472233959 472233204 0.000000e+00 785.0
15 TraesCS2B01G388700 chr2D 84.951 618 64 17 3652 4253 472231036 472230432 2.750000e-167 599.0
16 TraesCS2B01G388700 chr2D 84.473 541 59 14 2997 3534 472231740 472231222 1.320000e-140 510.0
17 TraesCS2B01G388700 chr2D 90.566 318 24 5 1814 2127 472447116 472446801 2.970000e-112 416.0
18 TraesCS2B01G388700 chr2D 93.585 265 16 1 2196 2460 472446802 472446539 1.390000e-105 394.0
19 TraesCS2B01G388700 chr2D 97.059 136 3 1 2553 2687 619720540 619720675 1.490000e-55 228.0
20 TraesCS2B01G388700 chr2D 94.615 130 7 0 5201 5330 472442585 472442456 9.050000e-48 202.0
21 TraesCS2B01G388700 chr2D 90.909 66 1 1 2137 2197 213703009 213702944 3.420000e-12 84.2
22 TraesCS2B01G388700 chr2D 97.674 43 1 0 2956 2998 247830405 247830363 2.060000e-09 75.0
23 TraesCS2B01G388700 chr2A 91.690 1456 71 25 3747 5195 613878068 613876656 0.000000e+00 1973.0
24 TraesCS2B01G388700 chr2A 90.250 1200 85 25 521 1703 613881118 613879934 0.000000e+00 1539.0
25 TraesCS2B01G388700 chr2A 87.260 832 66 32 2714 3528 613878912 613878104 0.000000e+00 913.0
26 TraesCS2B01G388700 chr2A 86.543 810 75 19 3652 4437 613703538 613702739 0.000000e+00 861.0
27 TraesCS2B01G388700 chr2A 84.459 740 69 29 986 1703 613720763 613720048 0.000000e+00 688.0
28 TraesCS2B01G388700 chr2A 82.471 850 65 39 4500 5330 613701060 613700276 0.000000e+00 667.0
29 TraesCS2B01G388700 chr2A 87.643 437 25 15 1814 2224 613879938 613879505 1.040000e-131 481.0
30 TraesCS2B01G388700 chr2A 89.189 333 28 4 2222 2551 613879443 613879116 4.970000e-110 409.0
31 TraesCS2B01G388700 chr2A 87.216 352 29 8 2997 3347 613714202 613713866 2.330000e-103 387.0
32 TraesCS2B01G388700 chr2A 79.812 426 35 25 9 415 613881466 613881073 4.090000e-66 263.0
33 TraesCS2B01G388700 chr2A 91.045 134 12 0 5197 5330 613876396 613876263 1.180000e-41 182.0
34 TraesCS2B01G388700 chr2A 94.286 70 3 1 4448 4516 613702760 613702691 7.300000e-19 106.0
35 TraesCS2B01G388700 chr2A 90.909 66 1 1 2137 2197 241968178 241968113 3.420000e-12 84.2
36 TraesCS2B01G388700 chr4A 92.308 325 14 2 1814 2127 395805044 395805368 8.140000e-123 451.0
37 TraesCS2B01G388700 chr4A 86.969 353 34 7 2196 2537 395805367 395805718 2.330000e-103 387.0
38 TraesCS2B01G388700 chr4A 89.809 157 14 1 1549 1703 395804892 395805048 3.260000e-47 200.0
39 TraesCS2B01G388700 chr4A 93.277 119 8 0 1700 1818 732350279 732350161 5.490000e-40 176.0
40 TraesCS2B01G388700 chr5B 99.225 129 1 0 2558 2686 436166848 436166720 3.210000e-57 233.0
41 TraesCS2B01G388700 chr7D 96.403 139 4 1 2552 2690 54967189 54967052 1.490000e-55 228.0
42 TraesCS2B01G388700 chr6B 95.745 141 6 0 2544 2684 612317272 612317132 1.490000e-55 228.0
43 TraesCS2B01G388700 chr6B 94.521 146 5 2 2541 2685 207510885 207511028 6.950000e-54 222.0
44 TraesCS2B01G388700 chr3B 96.296 135 5 0 2555 2689 527232892 527232758 6.950000e-54 222.0
45 TraesCS2B01G388700 chr3B 93.333 120 8 0 1700 1819 650615896 650616015 1.530000e-40 178.0
46 TraesCS2B01G388700 chr3B 88.158 76 5 2 2126 2197 367242938 367243013 2.640000e-13 87.9
47 TraesCS2B01G388700 chr3B 95.349 43 2 0 537 579 594832870 594832912 9.580000e-08 69.4
48 TraesCS2B01G388700 chr3B 97.297 37 1 0 2960 2996 229462859 229462823 4.460000e-06 63.9
49 TraesCS2B01G388700 chr5A 93.289 149 5 5 2551 2696 662382620 662382766 1.160000e-51 215.0
50 TraesCS2B01G388700 chr5A 87.342 79 4 3 2124 2197 22276487 22276564 9.510000e-13 86.1
51 TraesCS2B01G388700 chr3D 92.683 123 9 0 1700 1822 587748888 587748766 1.530000e-40 178.0
52 TraesCS2B01G388700 chr3D 93.277 119 8 0 1699 1817 5478058 5478176 5.490000e-40 176.0
53 TraesCS2B01G388700 chr3D 89.610 77 4 1 2121 2197 533669969 533669897 1.580000e-15 95.3
54 TraesCS2B01G388700 chr3D 86.747 83 5 4 2116 2197 533669887 533669964 2.640000e-13 87.9
55 TraesCS2B01G388700 chr3A 89.928 139 11 3 1693 1829 1250578 1250715 5.490000e-40 176.0
56 TraesCS2B01G388700 chr3A 89.928 139 11 3 1693 1829 1264289 1264426 5.490000e-40 176.0
57 TraesCS2B01G388700 chr3A 85.542 83 6 4 2116 2197 669525351 669525428 1.230000e-11 82.4
58 TraesCS2B01G388700 chr3A 97.561 41 1 0 2958 2998 621211460 621211420 2.660000e-08 71.3
59 TraesCS2B01G388700 chr3A 92.683 41 3 0 341 381 742863654 742863614 5.760000e-05 60.2
60 TraesCS2B01G388700 chr3A 94.118 34 2 0 2967 3000 340173083 340173116 1.000000e-02 52.8
61 TraesCS2B01G388700 chr4B 90.000 130 11 2 1696 1825 22280395 22280268 3.300000e-37 167.0
62 TraesCS2B01G388700 chr4D 89.041 73 5 1 2122 2191 360939757 360939829 2.640000e-13 87.9
63 TraesCS2B01G388700 chr7A 95.349 43 0 2 2960 3001 728415256 728415297 3.450000e-07 67.6
64 TraesCS2B01G388700 chr6D 97.143 35 1 0 2964 2998 464568852 464568886 5.760000e-05 60.2
65 TraesCS2B01G388700 chr6D 100.000 28 0 0 639 666 422320680 422320707 1.000000e-02 52.8
66 TraesCS2B01G388700 chr1A 88.235 51 4 2 329 379 486959845 486959797 5.760000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G388700 chr2B 551565223 551570552 5329 True 9843.000000 9843 100.000000 1 5330 1 chr2B.!!$R2 5329
1 TraesCS2B01G388700 chr2B 551533892 551538523 4631 True 717.100000 1352 88.429333 958 4480 3 chr2B.!!$R4 3522
2 TraesCS2B01G388700 chr2D 472442456 472448804 6348 True 850.428571 2248 90.883714 9 5330 7 chr2D.!!$R4 5321
3 TraesCS2B01G388700 chr2D 472229612 472233959 4347 True 686.500000 852 85.327500 956 5330 4 chr2D.!!$R3 4374
4 TraesCS2B01G388700 chr2A 613876263 613881466 5203 True 822.857143 1973 88.127000 9 5330 7 chr2A.!!$R5 5321
5 TraesCS2B01G388700 chr2A 613720048 613720763 715 True 688.000000 688 84.459000 986 1703 1 chr2A.!!$R3 717
6 TraesCS2B01G388700 chr2A 613700276 613703538 3262 True 544.666667 861 87.766667 3652 5330 3 chr2A.!!$R4 1678
7 TraesCS2B01G388700 chr4A 395804892 395805718 826 False 346.000000 451 89.695333 1549 2537 3 chr4A.!!$F1 988

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 889 0.999228 CATTACCGCGCGCACAAAAA 60.999 50.0 32.61 17.02 0.00 1.94 F
1505 1705 0.035820 TCGGGCAAGTGGGTATTCAC 60.036 55.0 0.00 0.00 37.89 3.18 F
1715 3385 0.251297 TTGTACTCCCTCCGTCCGAA 60.251 55.0 0.00 0.00 0.00 4.30 F
2251 4011 0.365523 CGTGGCAGACATAAACGTCG 59.634 55.0 0.00 0.00 40.98 5.12 F
2680 4801 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1793 3463 0.032813 TCCCTCCGTCCCGAAATACT 60.033 55.0 0.00 0.0 0.00 2.12 R
2663 4784 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.0 44.66 1.40 R
2664 4785 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 R
3727 6613 0.036164 CGTGAAGGATGTGGGTTGGA 59.964 55.0 0.00 0.0 0.00 3.53 R
4624 9763 0.033090 CTTATAACGGCTCCGGTCCC 59.967 60.0 13.31 1.7 44.69 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.041917 CATGCGCGTGCCTTTGGT 62.042 61.111 18.03 0.00 41.78 3.67
67 68 4.033776 CCCATGTGCGAGGGTGGT 62.034 66.667 0.00 0.00 40.34 4.16
442 467 1.226746 AAAAGTTCCCGCGAGTTCAG 58.773 50.000 8.23 0.00 0.00 3.02
507 532 8.898983 AAAATTGTGCTTTCAGAAAATGTTTG 57.101 26.923 0.00 0.00 0.00 2.93
643 673 9.883142 TGTATTTGAAACTTGTTCAGGATTTTT 57.117 25.926 0.00 0.00 0.00 1.94
674 704 9.545105 AAATCATGAATTTTAAAAGTGCTCACA 57.455 25.926 5.49 0.00 33.69 3.58
732 762 8.757164 AAAAATAATCGTGGATTTGAGGAAAC 57.243 30.769 0.00 0.00 33.95 2.78
782 812 8.753133 ACAGAAGAACCAGAAAAGAAAAAGAAT 58.247 29.630 0.00 0.00 0.00 2.40
855 888 1.441182 CATTACCGCGCGCACAAAA 60.441 52.632 32.61 18.86 0.00 2.44
856 889 0.999228 CATTACCGCGCGCACAAAAA 60.999 50.000 32.61 17.02 0.00 1.94
857 890 0.999730 ATTACCGCGCGCACAAAAAC 61.000 50.000 32.61 0.00 0.00 2.43
858 891 2.319011 TTACCGCGCGCACAAAAACA 62.319 50.000 32.61 2.58 0.00 2.83
899 932 1.181098 GCAGGCCCAGCTTTCTCAAA 61.181 55.000 10.38 0.00 0.00 2.69
900 933 1.331214 CAGGCCCAGCTTTCTCAAAA 58.669 50.000 0.00 0.00 0.00 2.44
901 934 1.688197 CAGGCCCAGCTTTCTCAAAAA 59.312 47.619 0.00 0.00 0.00 1.94
902 935 2.301009 CAGGCCCAGCTTTCTCAAAAAT 59.699 45.455 0.00 0.00 0.00 1.82
1020 1055 1.670406 GAGCTCACACAGTGCTGGG 60.670 63.158 9.40 0.00 46.35 4.45
1077 1112 4.467084 GCGGCCACCTCGAATCCA 62.467 66.667 2.24 0.00 0.00 3.41
1116 1151 1.758906 CTCCGTCTCCCTCCCCTTC 60.759 68.421 0.00 0.00 0.00 3.46
1120 1156 4.798682 TCTCCCTCCCCTTCCCGC 62.799 72.222 0.00 0.00 0.00 6.13
1307 1347 2.188161 GGGACTAGAGGCGGTCGAG 61.188 68.421 0.00 0.00 34.20 4.04
1438 1478 6.163476 TCGATATCCTGGTATGTGTTAATGC 58.837 40.000 0.00 0.00 0.00 3.56
1451 1491 3.062234 GTGTTAATGCGTACCTCTGCTTC 59.938 47.826 0.00 0.00 0.00 3.86
1505 1705 0.035820 TCGGGCAAGTGGGTATTCAC 60.036 55.000 0.00 0.00 37.89 3.18
1522 1726 0.673985 CACACGGTTCCACTGAGAGA 59.326 55.000 0.00 0.00 0.00 3.10
1533 1737 4.130857 TCCACTGAGAGATCGTCAGATAC 58.869 47.826 26.09 0.58 43.65 2.24
1580 3239 7.386851 TCTTAACAGTAAGTTGAGCTTAGCAT 58.613 34.615 7.07 0.00 42.01 3.79
1663 3333 6.780706 TTTTAAGAGCTCCGTTTAGAAGTG 57.219 37.500 10.93 0.00 0.00 3.16
1703 3373 5.995897 TCTTTCTTTTACCTGGCTTGTACTC 59.004 40.000 0.00 0.00 0.00 2.59
1704 3374 4.281898 TCTTTTACCTGGCTTGTACTCC 57.718 45.455 0.00 0.00 0.00 3.85
1705 3375 3.008704 TCTTTTACCTGGCTTGTACTCCC 59.991 47.826 0.00 0.00 0.00 4.30
1706 3376 2.337359 TTACCTGGCTTGTACTCCCT 57.663 50.000 0.00 0.00 0.00 4.20
1707 3377 1.861982 TACCTGGCTTGTACTCCCTC 58.138 55.000 0.00 0.00 0.00 4.30
1708 3378 0.910088 ACCTGGCTTGTACTCCCTCC 60.910 60.000 0.00 0.00 0.00 4.30
1709 3379 1.517832 CTGGCTTGTACTCCCTCCG 59.482 63.158 0.00 0.00 0.00 4.63
1710 3380 1.229082 TGGCTTGTACTCCCTCCGT 60.229 57.895 0.00 0.00 0.00 4.69
1711 3381 1.255667 TGGCTTGTACTCCCTCCGTC 61.256 60.000 0.00 0.00 0.00 4.79
1712 3382 1.516423 GCTTGTACTCCCTCCGTCC 59.484 63.158 0.00 0.00 0.00 4.79
1713 3383 1.807886 CTTGTACTCCCTCCGTCCG 59.192 63.158 0.00 0.00 0.00 4.79
1714 3384 0.679002 CTTGTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
1715 3385 0.251297 TTGTACTCCCTCCGTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
1716 3386 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
1717 3387 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
1718 3388 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
1719 3389 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1720 3390 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1721 3391 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1722 3392 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1723 3393 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1724 3394 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1725 3395 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1726 3396 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
1727 3397 2.228582 TCCGTCCGAAAATACTTGTCGA 59.771 45.455 1.13 0.00 36.92 4.20
1728 3398 2.988493 CCGTCCGAAAATACTTGTCGAA 59.012 45.455 1.13 0.00 36.92 3.71
1729 3399 3.060363 CCGTCCGAAAATACTTGTCGAAG 59.940 47.826 1.13 0.00 36.92 3.79
1730 3400 3.916172 CGTCCGAAAATACTTGTCGAAGA 59.084 43.478 1.13 0.00 36.92 2.87
1731 3401 4.383649 CGTCCGAAAATACTTGTCGAAGAA 59.616 41.667 1.13 0.00 39.69 2.52
1732 3402 5.107760 CGTCCGAAAATACTTGTCGAAGAAA 60.108 40.000 1.13 0.00 39.69 2.52
1733 3403 6.400727 CGTCCGAAAATACTTGTCGAAGAAAT 60.401 38.462 1.13 0.00 39.69 2.17
1734 3404 6.736853 GTCCGAAAATACTTGTCGAAGAAATG 59.263 38.462 1.13 0.00 39.69 2.32
1735 3405 6.647481 TCCGAAAATACTTGTCGAAGAAATGA 59.353 34.615 1.13 0.00 39.69 2.57
1736 3406 7.171848 TCCGAAAATACTTGTCGAAGAAATGAA 59.828 33.333 1.13 0.00 39.69 2.57
1737 3407 7.962918 CCGAAAATACTTGTCGAAGAAATGAAT 59.037 33.333 1.13 0.00 39.69 2.57
1738 3408 8.779561 CGAAAATACTTGTCGAAGAAATGAATG 58.220 33.333 0.00 0.00 39.69 2.67
1739 3409 9.825972 GAAAATACTTGTCGAAGAAATGAATGA 57.174 29.630 0.00 0.00 39.69 2.57
1742 3412 9.994432 AATACTTGTCGAAGAAATGAATGAATC 57.006 29.630 0.00 0.00 39.69 2.52
1743 3413 7.678947 ACTTGTCGAAGAAATGAATGAATCT 57.321 32.000 0.00 0.00 39.69 2.40
1744 3414 8.777865 ACTTGTCGAAGAAATGAATGAATCTA 57.222 30.769 0.00 0.00 39.69 1.98
1745 3415 8.877779 ACTTGTCGAAGAAATGAATGAATCTAG 58.122 33.333 0.00 0.00 39.69 2.43
1746 3416 9.091784 CTTGTCGAAGAAATGAATGAATCTAGA 57.908 33.333 0.00 0.00 39.69 2.43
1747 3417 8.412608 TGTCGAAGAAATGAATGAATCTAGAC 57.587 34.615 0.00 0.00 39.69 2.59
1748 3418 7.220875 TGTCGAAGAAATGAATGAATCTAGACG 59.779 37.037 0.00 0.00 39.69 4.18
1749 3419 7.221067 GTCGAAGAAATGAATGAATCTAGACGT 59.779 37.037 0.00 0.00 39.69 4.34
1750 3420 8.403236 TCGAAGAAATGAATGAATCTAGACGTA 58.597 33.333 0.00 0.00 0.00 3.57
1751 3421 9.186323 CGAAGAAATGAATGAATCTAGACGTAT 57.814 33.333 0.00 0.00 0.00 3.06
1781 3451 9.209048 AGTTATAGATACACCCAATTGTAGTCA 57.791 33.333 4.43 0.00 35.44 3.41
1782 3452 9.998106 GTTATAGATACACCCAATTGTAGTCAT 57.002 33.333 4.43 0.00 35.44 3.06
1784 3454 6.814954 AGATACACCCAATTGTAGTCATCT 57.185 37.500 4.43 8.58 35.44 2.90
1785 3455 6.821388 AGATACACCCAATTGTAGTCATCTC 58.179 40.000 4.43 0.00 35.44 2.75
1786 3456 6.613271 AGATACACCCAATTGTAGTCATCTCT 59.387 38.462 4.43 0.00 35.44 3.10
1787 3457 5.091261 ACACCCAATTGTAGTCATCTCTC 57.909 43.478 4.43 0.00 0.00 3.20
1788 3458 4.080863 ACACCCAATTGTAGTCATCTCTCC 60.081 45.833 4.43 0.00 0.00 3.71
1789 3459 3.133003 ACCCAATTGTAGTCATCTCTCCG 59.867 47.826 4.43 0.00 0.00 4.63
1790 3460 3.384789 CCCAATTGTAGTCATCTCTCCGA 59.615 47.826 4.43 0.00 0.00 4.55
1791 3461 4.363999 CCAATTGTAGTCATCTCTCCGAC 58.636 47.826 4.43 0.00 0.00 4.79
1792 3462 4.142160 CCAATTGTAGTCATCTCTCCGACA 60.142 45.833 4.43 0.00 34.48 4.35
1793 3463 5.410924 CAATTGTAGTCATCTCTCCGACAA 58.589 41.667 0.00 0.00 34.48 3.18
1794 3464 4.703645 TTGTAGTCATCTCTCCGACAAG 57.296 45.455 0.00 0.00 34.48 3.16
1795 3465 3.687125 TGTAGTCATCTCTCCGACAAGT 58.313 45.455 0.00 0.00 34.48 3.16
1796 3466 4.840271 TGTAGTCATCTCTCCGACAAGTA 58.160 43.478 0.00 0.00 34.48 2.24
1797 3467 5.437946 TGTAGTCATCTCTCCGACAAGTAT 58.562 41.667 0.00 0.00 34.48 2.12
1798 3468 5.886474 TGTAGTCATCTCTCCGACAAGTATT 59.114 40.000 0.00 0.00 34.48 1.89
1799 3469 5.923733 AGTCATCTCTCCGACAAGTATTT 57.076 39.130 0.00 0.00 34.48 1.40
1800 3470 5.897050 AGTCATCTCTCCGACAAGTATTTC 58.103 41.667 0.00 0.00 34.48 2.17
1801 3471 4.735822 GTCATCTCTCCGACAAGTATTTCG 59.264 45.833 0.00 0.00 34.93 3.46
1832 3502 7.312415 AGGGAGTACTAGTTAAAGCTGAAAA 57.688 36.000 0.00 0.00 0.00 2.29
1883 3553 4.439289 GCTTGGCTGTTCAGATTATTGACC 60.439 45.833 3.84 0.00 0.00 4.02
1906 3587 7.791029 ACCATTATTCAAAAGTGGTTTGTCTT 58.209 30.769 0.00 0.00 45.83 3.01
1907 3588 7.710475 ACCATTATTCAAAAGTGGTTTGTCTTG 59.290 33.333 0.00 0.00 45.83 3.02
1971 3653 7.826744 TGTTATGTGTAGATAAACAATGCAGGA 59.173 33.333 0.00 0.00 0.00 3.86
2039 3721 3.102052 ACAGGTGAATGCAGCAAAAAG 57.898 42.857 5.50 0.00 44.77 2.27
2134 3816 7.918076 TGAGTCAACAAAATAATACTCCCTCT 58.082 34.615 0.00 0.00 33.94 3.69
2135 3817 9.042450 TGAGTCAACAAAATAATACTCCCTCTA 57.958 33.333 0.00 0.00 33.94 2.43
2152 3834 6.806751 TCCCTCTATCTCAAAATGTAAGACG 58.193 40.000 0.00 0.00 0.00 4.18
2153 3835 6.380274 TCCCTCTATCTCAAAATGTAAGACGT 59.620 38.462 0.00 0.00 0.00 4.34
2154 3836 7.042335 CCCTCTATCTCAAAATGTAAGACGTT 58.958 38.462 0.00 0.00 0.00 3.99
2155 3837 7.549488 CCCTCTATCTCAAAATGTAAGACGTTT 59.451 37.037 0.00 0.00 38.84 3.60
2156 3838 8.936864 CCTCTATCTCAAAATGTAAGACGTTTT 58.063 33.333 4.14 4.14 45.25 2.43
2162 3844 7.694784 TCTCAAAATGTAAGACGTTTTTGTGTC 59.305 33.333 16.32 0.00 42.72 3.67
2163 3845 7.306213 TCAAAATGTAAGACGTTTTTGTGTCA 58.694 30.769 16.32 0.45 42.72 3.58
2164 3846 7.808381 TCAAAATGTAAGACGTTTTTGTGTCAA 59.192 29.630 16.32 0.17 42.72 3.18
2166 3848 8.522178 AAATGTAAGACGTTTTTGTGTCAAAA 57.478 26.923 0.00 3.93 33.87 2.44
2167 3849 8.522178 AATGTAAGACGTTTTTGTGTCAAAAA 57.478 26.923 13.87 13.87 37.58 1.94
2251 4011 0.365523 CGTGGCAGACATAAACGTCG 59.634 55.000 0.00 0.00 40.98 5.12
2371 4134 2.756207 CCATTCATCAACCACAGCATCA 59.244 45.455 0.00 0.00 0.00 3.07
2381 4144 6.851609 TCAACCACAGCATCAACATAAATAC 58.148 36.000 0.00 0.00 0.00 1.89
2429 4192 8.905702 GCATAGTTTAGTTTGAGAAAACACATG 58.094 33.333 4.34 0.00 35.93 3.21
2493 4614 9.166173 ACATTGTAGAAAATCATCAATCGAAGA 57.834 29.630 0.00 0.00 45.75 2.87
2507 4628 7.539712 TCAATCGAAGATGACAATCCTAAAC 57.460 36.000 0.00 0.00 45.12 2.01
2508 4629 6.538742 TCAATCGAAGATGACAATCCTAAACC 59.461 38.462 0.00 0.00 45.12 3.27
2517 4638 8.109634 AGATGACAATCCTAAACCTGTACATTT 58.890 33.333 0.00 0.00 32.77 2.32
2518 4639 7.681939 TGACAATCCTAAACCTGTACATTTC 57.318 36.000 0.00 0.00 0.00 2.17
2537 4658 7.075741 ACATTTCTGACAGCGTGTTTATTTAC 58.924 34.615 0.00 0.00 0.00 2.01
2538 4659 5.600908 TTCTGACAGCGTGTTTATTTACC 57.399 39.130 0.00 0.00 0.00 2.85
2567 4688 9.720769 ATTATGTGTTAAATATTACTCCCTCCG 57.279 33.333 0.00 0.00 0.00 4.63
2568 4689 6.549433 TGTGTTAAATATTACTCCCTCCGT 57.451 37.500 0.00 0.00 0.00 4.69
2569 4690 6.576185 TGTGTTAAATATTACTCCCTCCGTC 58.424 40.000 0.00 0.00 0.00 4.79
2570 4691 5.987953 GTGTTAAATATTACTCCCTCCGTCC 59.012 44.000 0.00 0.00 0.00 4.79
2571 4692 5.221303 TGTTAAATATTACTCCCTCCGTCCG 60.221 44.000 0.00 0.00 0.00 4.79
2572 4693 2.965671 ATATTACTCCCTCCGTCCGA 57.034 50.000 0.00 0.00 0.00 4.55
2573 4694 2.734755 TATTACTCCCTCCGTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
2574 4695 1.856629 ATTACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
2575 4696 1.631405 TTACTCCCTCCGTCCGAAAA 58.369 50.000 0.00 0.00 0.00 2.29
2576 4697 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2577 4698 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2578 4699 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2579 4700 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2580 4701 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2581 4702 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2582 4703 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2583 4704 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2584 4705 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2585 4706 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2586 4707 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2587 4708 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2588 4709 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2589 4710 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2590 4711 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2591 4712 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2592 4713 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2593 4714 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2594 4715 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2595 4716 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
2603 4724 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
2671 4792 8.208718 TCTATTTTGATGACAAGTATTTCCGG 57.791 34.615 0.00 0.00 37.32 5.14
2672 4793 8.044309 TCTATTTTGATGACAAGTATTTCCGGA 58.956 33.333 0.00 0.00 37.32 5.14
2673 4794 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2674 4795 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2675 4796 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2676 4797 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2677 4798 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2678 4799 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2679 4800 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2680 4801 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2681 4802 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2682 4803 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2683 4804 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2684 4805 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
2685 4806 2.044650 CCGGACGGAGGGAGTACA 60.045 66.667 4.40 0.00 37.50 2.90
2686 4807 1.455217 CCGGACGGAGGGAGTACAT 60.455 63.158 4.40 0.00 37.50 2.29
2687 4808 1.041447 CCGGACGGAGGGAGTACATT 61.041 60.000 4.40 0.00 37.50 2.71
2688 4809 0.822164 CGGACGGAGGGAGTACATTT 59.178 55.000 0.00 0.00 0.00 2.32
2780 5535 6.811954 TCTATTATGGTGTGCGAACAGAATA 58.188 36.000 0.00 0.00 29.90 1.75
2783 5538 1.084289 GGTGTGCGAACAGAATACCC 58.916 55.000 0.00 0.00 0.00 3.69
2784 5539 1.609580 GGTGTGCGAACAGAATACCCA 60.610 52.381 0.00 0.00 0.00 4.51
2785 5540 1.732259 GTGTGCGAACAGAATACCCAG 59.268 52.381 0.00 0.00 0.00 4.45
2787 5542 1.066430 GTGCGAACAGAATACCCAGGA 60.066 52.381 0.00 0.00 0.00 3.86
2789 5544 2.007608 GCGAACAGAATACCCAGGAAC 58.992 52.381 0.00 0.00 0.00 3.62
2790 5545 2.354805 GCGAACAGAATACCCAGGAACT 60.355 50.000 0.00 0.00 43.88 3.01
2791 5546 3.118884 GCGAACAGAATACCCAGGAACTA 60.119 47.826 0.00 0.00 36.02 2.24
2792 5547 4.622220 GCGAACAGAATACCCAGGAACTAA 60.622 45.833 0.00 0.00 36.02 2.24
2793 5548 5.484715 CGAACAGAATACCCAGGAACTAAA 58.515 41.667 0.00 0.00 36.02 1.85
2794 5549 6.113411 CGAACAGAATACCCAGGAACTAAAT 58.887 40.000 0.00 0.00 36.02 1.40
2874 5632 8.548721 CCAAGATTATATTTGTACCGAACAGAC 58.451 37.037 0.00 0.00 39.87 3.51
2879 5637 8.697846 TTATATTTGTACCGAACAGACAAGAG 57.302 34.615 0.00 0.00 39.87 2.85
2891 5649 6.183360 CGAACAGACAAGAGTTTAAGTTGGTT 60.183 38.462 0.00 0.00 0.00 3.67
2899 5657 2.956333 AGTTTAAGTTGGTTGGCCTCAC 59.044 45.455 3.32 0.00 35.27 3.51
2908 5666 1.610886 GGTTGGCCTCACCTCACTTAC 60.611 57.143 15.56 0.00 40.22 2.34
2954 5712 9.745880 CTACCTCTGTAAACAAATATACGACAT 57.254 33.333 0.00 0.00 0.00 3.06
2956 5714 9.444600 ACCTCTGTAAACAAATATACGACATTT 57.555 29.630 0.00 0.00 0.00 2.32
2971 5729 8.874745 ATACGACATTTTTGTGATCTAAAACG 57.125 30.769 7.62 9.71 33.04 3.60
2972 5730 6.721321 ACGACATTTTTGTGATCTAAAACGT 58.279 32.000 7.62 10.16 33.04 3.99
2973 5731 6.849305 ACGACATTTTTGTGATCTAAAACGTC 59.151 34.615 16.86 16.86 37.75 4.34
2974 5732 7.069569 CGACATTTTTGTGATCTAAAACGTCT 58.930 34.615 20.20 0.00 38.36 4.18
2975 5733 7.586300 CGACATTTTTGTGATCTAAAACGTCTT 59.414 33.333 20.20 0.00 38.36 3.01
2976 5734 9.872757 GACATTTTTGTGATCTAAAACGTCTTA 57.127 29.630 18.10 0.00 37.93 2.10
3149 5931 4.889409 ACAATTAACCTGTCTATGCATGGG 59.111 41.667 10.16 6.23 0.00 4.00
3177 5959 4.132336 TGAAAGCATGGATGTAGATCAGC 58.868 43.478 1.87 3.03 0.00 4.26
3305 6087 2.900546 TCTTCTTCAGTTGTCCTCCTCC 59.099 50.000 0.00 0.00 0.00 4.30
3371 6153 6.180472 AGTAAGTATTGTTAACCATGCTGCT 58.820 36.000 10.38 9.18 0.00 4.24
3383 6165 0.391661 ATGCTGCTGGTCGTACAAGG 60.392 55.000 0.00 0.00 0.00 3.61
3561 6347 6.763715 ATAAGGGATATAAGGTTGCAGACA 57.236 37.500 0.00 0.00 0.00 3.41
3562 6348 5.653255 AAGGGATATAAGGTTGCAGACAT 57.347 39.130 0.00 0.00 0.00 3.06
3563 6349 4.978099 AGGGATATAAGGTTGCAGACATG 58.022 43.478 0.00 0.00 0.00 3.21
3565 6351 5.311649 AGGGATATAAGGTTGCAGACATGAT 59.688 40.000 0.00 0.00 0.00 2.45
3566 6352 5.413833 GGGATATAAGGTTGCAGACATGATG 59.586 44.000 0.00 0.00 0.00 3.07
3576 6460 5.239359 TGCAGACATGATGTTATTTCAGC 57.761 39.130 0.00 0.00 0.00 4.26
3620 6504 6.742999 CAATAAGCATGTGATTGCATGTAC 57.257 37.500 7.71 0.00 45.75 2.90
3622 6506 4.365899 AAGCATGTGATTGCATGTACTG 57.634 40.909 7.71 0.00 45.75 2.74
3623 6507 3.349927 AGCATGTGATTGCATGTACTGT 58.650 40.909 7.71 0.00 45.75 3.55
3624 6508 4.516323 AGCATGTGATTGCATGTACTGTA 58.484 39.130 7.71 0.00 45.75 2.74
3625 6509 4.573607 AGCATGTGATTGCATGTACTGTAG 59.426 41.667 7.71 0.00 45.75 2.74
3626 6510 4.260907 GCATGTGATTGCATGTACTGTAGG 60.261 45.833 7.71 0.00 45.75 3.18
3627 6511 4.817318 TGTGATTGCATGTACTGTAGGA 57.183 40.909 0.00 0.00 0.00 2.94
3628 6512 4.758688 TGTGATTGCATGTACTGTAGGAG 58.241 43.478 0.00 0.00 0.00 3.69
3629 6513 4.122776 GTGATTGCATGTACTGTAGGAGG 58.877 47.826 0.00 0.00 0.00 4.30
3630 6514 3.134623 TGATTGCATGTACTGTAGGAGGG 59.865 47.826 0.00 0.00 0.00 4.30
3631 6515 2.247699 TGCATGTACTGTAGGAGGGT 57.752 50.000 0.00 0.00 0.00 4.34
3632 6516 2.546899 TGCATGTACTGTAGGAGGGTT 58.453 47.619 0.00 0.00 0.00 4.11
3633 6517 2.236146 TGCATGTACTGTAGGAGGGTTG 59.764 50.000 0.00 0.00 0.00 3.77
3634 6518 2.236395 GCATGTACTGTAGGAGGGTTGT 59.764 50.000 0.00 0.00 0.00 3.32
3635 6519 3.307480 GCATGTACTGTAGGAGGGTTGTT 60.307 47.826 0.00 0.00 0.00 2.83
3636 6520 4.806286 GCATGTACTGTAGGAGGGTTGTTT 60.806 45.833 0.00 0.00 0.00 2.83
3637 6521 5.313712 CATGTACTGTAGGAGGGTTGTTTT 58.686 41.667 0.00 0.00 0.00 2.43
3638 6522 5.376756 TGTACTGTAGGAGGGTTGTTTTT 57.623 39.130 0.00 0.00 0.00 1.94
3668 6552 8.337532 CGATAATCATAGCTTTGTGTTCATTCA 58.662 33.333 4.00 0.00 0.00 2.57
3714 6600 2.572191 TTACGGATTGTGCTACGGAG 57.428 50.000 0.00 0.00 0.00 4.63
3722 6608 4.933400 GGATTGTGCTACGGAGTTTTCTTA 59.067 41.667 0.00 0.00 37.78 2.10
3724 6610 6.093633 GGATTGTGCTACGGAGTTTTCTTATT 59.906 38.462 0.00 0.00 37.78 1.40
3725 6611 5.856126 TGTGCTACGGAGTTTTCTTATTG 57.144 39.130 0.00 0.00 37.78 1.90
3727 6613 5.761234 TGTGCTACGGAGTTTTCTTATTGTT 59.239 36.000 0.00 0.00 37.78 2.83
3729 6615 5.410439 TGCTACGGAGTTTTCTTATTGTTCC 59.590 40.000 0.00 0.00 37.78 3.62
3732 6618 6.068473 ACGGAGTTTTCTTATTGTTCCAAC 57.932 37.500 0.00 0.00 37.78 3.77
3735 6621 5.303333 GGAGTTTTCTTATTGTTCCAACCCA 59.697 40.000 0.00 0.00 0.00 4.51
3745 6631 1.886542 GTTCCAACCCACATCCTTCAC 59.113 52.381 0.00 0.00 0.00 3.18
3751 6648 1.156736 CCCACATCCTTCACGTGTTC 58.843 55.000 16.51 0.00 0.00 3.18
3789 6687 8.386606 CAGAAAGCATATGTTCAGAAACTAGTC 58.613 37.037 4.29 0.00 36.30 2.59
3803 6705 8.931568 TCAGAAACTAGTCCCTTTTAGTTAACT 58.068 33.333 13.68 13.68 38.73 2.24
3809 6711 8.599792 ACTAGTCCCTTTTAGTTAACTAATGCA 58.400 33.333 24.89 10.78 38.16 3.96
3810 6712 7.683437 AGTCCCTTTTAGTTAACTAATGCAC 57.317 36.000 24.89 17.16 38.16 4.57
3811 6713 7.228590 AGTCCCTTTTAGTTAACTAATGCACA 58.771 34.615 24.89 10.12 38.16 4.57
3819 6721 5.469479 AGTTAACTAATGCACATGTTTGCC 58.531 37.500 6.26 0.00 42.25 4.52
3836 6738 0.944386 GCCGAGCAGAACTTCAACAA 59.056 50.000 0.00 0.00 0.00 2.83
3887 6789 4.505191 CGTCGACAACCTTACTGAAAAGAA 59.495 41.667 17.16 0.00 0.00 2.52
4300 7208 9.539825 TTGTCAATAAACATTGTGCAGTTTAAT 57.460 25.926 11.60 2.99 41.76 1.40
4510 7995 9.262358 GTTTGTTAACAAAATTAGCCAACCATA 57.738 29.630 30.09 4.93 46.08 2.74
4526 9660 5.920273 CCAACCATAGTTTTGATGTGTGAAC 59.080 40.000 0.00 0.00 32.45 3.18
4551 9685 6.402011 CGTTTCAAACTTGCCAAAAGTTGATT 60.402 34.615 4.36 0.00 40.10 2.57
4573 9709 5.356882 TCTTTTGTGAGGTTGCTAAATCG 57.643 39.130 0.00 0.00 0.00 3.34
4658 9801 6.072064 GCCGTTATAAGTATCTTGCTCTCCTA 60.072 42.308 0.00 0.00 0.00 2.94
4659 9802 7.523380 GCCGTTATAAGTATCTTGCTCTCCTAA 60.523 40.741 0.00 0.00 0.00 2.69
4665 9808 1.475403 TCTTGCTCTCCTAACTCCCG 58.525 55.000 0.00 0.00 0.00 5.14
4673 9822 3.705072 CTCTCCTAACTCCCGTAACCATT 59.295 47.826 0.00 0.00 0.00 3.16
4772 9923 2.029844 GCTGTTGGAGCTCGTGGAC 61.030 63.158 7.83 4.19 45.21 4.02
4831 10005 1.542547 CCTGCCAAACACGAGGTTAGT 60.543 52.381 0.00 0.00 39.29 2.24
4832 10006 2.218603 CTGCCAAACACGAGGTTAGTT 58.781 47.619 0.00 0.00 39.29 2.24
4833 10007 3.395639 CTGCCAAACACGAGGTTAGTTA 58.604 45.455 0.00 0.00 39.29 2.24
4834 10008 3.395639 TGCCAAACACGAGGTTAGTTAG 58.604 45.455 0.00 0.00 39.29 2.34
4835 10009 2.159037 GCCAAACACGAGGTTAGTTAGC 59.841 50.000 0.00 0.00 39.29 3.09
4836 10010 2.740447 CCAAACACGAGGTTAGTTAGCC 59.260 50.000 0.00 0.00 39.29 3.93
4837 10011 2.358939 AACACGAGGTTAGTTAGCCG 57.641 50.000 0.00 0.00 38.15 5.52
4838 10012 0.108945 ACACGAGGTTAGTTAGCCGC 60.109 55.000 0.00 0.00 0.00 6.53
4839 10013 0.804933 CACGAGGTTAGTTAGCCGCC 60.805 60.000 0.00 0.00 0.00 6.13
4840 10014 1.227176 CGAGGTTAGTTAGCCGCCC 60.227 63.158 0.00 0.00 0.00 6.13
4841 10015 1.902556 GAGGTTAGTTAGCCGCCCA 59.097 57.895 0.00 0.00 0.00 5.36
4842 10016 0.468648 GAGGTTAGTTAGCCGCCCAT 59.531 55.000 0.00 0.00 0.00 4.00
4843 10017 1.690352 GAGGTTAGTTAGCCGCCCATA 59.310 52.381 0.00 0.00 0.00 2.74
4844 10018 1.415289 AGGTTAGTTAGCCGCCCATAC 59.585 52.381 0.00 0.00 0.00 2.39
4845 10019 1.139455 GGTTAGTTAGCCGCCCATACA 59.861 52.381 0.00 0.00 0.00 2.29
4846 10020 2.207590 GTTAGTTAGCCGCCCATACAC 58.792 52.381 0.00 0.00 0.00 2.90
4847 10021 0.386476 TAGTTAGCCGCCCATACACG 59.614 55.000 0.00 0.00 0.00 4.49
4848 10022 2.202960 TTAGCCGCCCATACACGC 60.203 61.111 0.00 0.00 0.00 5.34
4849 10023 2.727392 TTAGCCGCCCATACACGCT 61.727 57.895 0.00 0.00 0.00 5.07
4850 10024 2.246761 TTAGCCGCCCATACACGCTT 62.247 55.000 0.00 0.00 0.00 4.68
4851 10025 1.393487 TAGCCGCCCATACACGCTTA 61.393 55.000 0.00 0.00 0.00 3.09
4852 10026 2.244651 GCCGCCCATACACGCTTAG 61.245 63.158 0.00 0.00 0.00 2.18
4919 10094 2.434185 TCATCGACTGCGGTTGCC 60.434 61.111 8.17 0.00 41.78 4.52
5018 10195 4.754667 GTCTTGACGGCCCGGGAC 62.755 72.222 29.31 24.76 0.00 4.46
5076 10253 1.915266 CTGGGGCTCTCTGGTGTCA 60.915 63.158 0.00 0.00 0.00 3.58
5199 11052 6.751514 TCGTTTCATTTTAGCATACCACAT 57.248 33.333 0.00 0.00 0.00 3.21
5236 11089 1.349688 AGGTTTGAAGCACCGGTGATA 59.650 47.619 38.30 15.82 39.56 2.15
5242 11095 1.139058 GAAGCACCGGTGATAGATGGT 59.861 52.381 38.30 16.18 34.29 3.55
5304 11165 0.035739 GGGTTGAGTACGGCCAAGAA 59.964 55.000 2.24 0.00 0.00 2.52
5313 11174 1.567504 ACGGCCAAGAATTCGATACG 58.432 50.000 2.24 5.55 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.292159 GGGGTGTTTGGGCGTCAC 61.292 66.667 0.00 0.00 0.00 3.67
8 9 4.589675 GGGGGTGTTTGGGCGTCA 62.590 66.667 0.00 0.00 0.00 4.35
427 451 0.942252 AAAACTGAACTCGCGGGAAC 59.058 50.000 15.95 6.61 0.00 3.62
428 452 1.670791 AAAAACTGAACTCGCGGGAA 58.329 45.000 15.95 0.00 0.00 3.97
482 507 8.513774 ACAAACATTTTCTGAAAGCACAATTTT 58.486 25.926 2.75 0.00 0.00 1.82
484 509 7.614124 ACAAACATTTTCTGAAAGCACAATT 57.386 28.000 2.75 0.00 0.00 2.32
485 510 8.196771 TCTACAAACATTTTCTGAAAGCACAAT 58.803 29.630 2.75 0.00 0.00 2.71
489 514 9.598517 AAAATCTACAAACATTTTCTGAAAGCA 57.401 25.926 2.75 0.00 27.97 3.91
706 736 9.849166 GTTTCCTCAAATCCACGATTATTTTTA 57.151 29.630 0.00 0.00 31.46 1.52
708 738 7.891561 TGTTTCCTCAAATCCACGATTATTTT 58.108 30.769 0.00 0.00 31.46 1.82
782 812 5.875910 TCTGTCCGTTTTCTTTCTGTTGTTA 59.124 36.000 0.00 0.00 0.00 2.41
1120 1156 0.459237 AATTCTCTGCGAGCGGAGTG 60.459 55.000 27.12 15.87 46.54 3.51
1123 1159 1.476891 AGTAAATTCTCTGCGAGCGGA 59.523 47.619 6.43 6.43 0.00 5.54
1134 1170 4.437390 CGCGCAGAAATTCCAGTAAATTCT 60.437 41.667 8.75 0.00 0.00 2.40
1451 1491 2.673368 AGGTCTTAATCTTCAAAGCGCG 59.327 45.455 0.00 0.00 0.00 6.86
1505 1705 1.468224 CGATCTCTCAGTGGAACCGTG 60.468 57.143 0.00 0.00 37.80 4.94
1522 1726 7.792374 AAAATGCATACTTGTATCTGACGAT 57.208 32.000 0.00 0.00 0.00 3.73
1561 1783 9.098355 TGTAATTATGCTAAGCTCAACTTACTG 57.902 33.333 0.00 0.00 39.97 2.74
1562 1784 9.838339 ATGTAATTATGCTAAGCTCAACTTACT 57.162 29.630 0.00 0.00 39.97 2.24
1572 3231 9.884465 AATTTCTTCGATGTAATTATGCTAAGC 57.116 29.630 12.28 0.00 0.00 3.09
1589 3255 5.342806 TGTGCTGAGTAACAATTTCTTCG 57.657 39.130 0.00 0.00 0.00 3.79
1645 3312 3.444388 CCTACACTTCTAAACGGAGCTCT 59.556 47.826 14.64 0.00 0.00 4.09
1649 3316 3.056749 AGCACCTACACTTCTAAACGGAG 60.057 47.826 0.00 0.00 0.00 4.63
1663 3333 7.674471 AAAGAAAGAAATCTACAGCACCTAC 57.326 36.000 0.00 0.00 0.00 3.18
1703 3373 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1704 3374 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1705 3375 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1706 3376 2.228582 TCGACAAGTATTTTCGGACGGA 59.771 45.455 0.00 0.00 33.50 4.69
1707 3377 2.598589 TCGACAAGTATTTTCGGACGG 58.401 47.619 0.00 0.00 33.50 4.79
1708 3378 3.916172 TCTTCGACAAGTATTTTCGGACG 59.084 43.478 0.00 0.00 33.50 4.79
1709 3379 5.834239 TTCTTCGACAAGTATTTTCGGAC 57.166 39.130 0.00 0.00 33.50 4.79
1710 3380 6.647481 TCATTTCTTCGACAAGTATTTTCGGA 59.353 34.615 0.00 0.00 33.50 4.55
1711 3381 6.827641 TCATTTCTTCGACAAGTATTTTCGG 58.172 36.000 0.00 0.00 33.50 4.30
1712 3382 8.779561 CATTCATTTCTTCGACAAGTATTTTCG 58.220 33.333 0.00 0.00 0.00 3.46
1713 3383 9.825972 TCATTCATTTCTTCGACAAGTATTTTC 57.174 29.630 0.00 0.00 0.00 2.29
1716 3386 9.994432 GATTCATTCATTTCTTCGACAAGTATT 57.006 29.630 0.00 0.00 0.00 1.89
1717 3387 9.388506 AGATTCATTCATTTCTTCGACAAGTAT 57.611 29.630 0.00 0.00 0.00 2.12
1718 3388 8.777865 AGATTCATTCATTTCTTCGACAAGTA 57.222 30.769 0.00 0.00 0.00 2.24
1719 3389 7.678947 AGATTCATTCATTTCTTCGACAAGT 57.321 32.000 0.00 0.00 0.00 3.16
1720 3390 9.091784 TCTAGATTCATTCATTTCTTCGACAAG 57.908 33.333 0.00 0.00 0.00 3.16
1721 3391 8.873830 GTCTAGATTCATTCATTTCTTCGACAA 58.126 33.333 0.00 0.00 0.00 3.18
1722 3392 7.220875 CGTCTAGATTCATTCATTTCTTCGACA 59.779 37.037 0.00 0.00 0.00 4.35
1723 3393 7.221067 ACGTCTAGATTCATTCATTTCTTCGAC 59.779 37.037 0.00 0.00 0.00 4.20
1724 3394 7.258441 ACGTCTAGATTCATTCATTTCTTCGA 58.742 34.615 0.00 0.00 0.00 3.71
1725 3395 7.456684 ACGTCTAGATTCATTCATTTCTTCG 57.543 36.000 0.00 0.00 0.00 3.79
1755 3425 9.209048 TGACTACAATTGGGTGTATCTATAACT 57.791 33.333 10.83 0.00 33.59 2.24
1756 3426 9.998106 ATGACTACAATTGGGTGTATCTATAAC 57.002 33.333 10.83 0.00 33.59 1.89
1758 3428 9.601810 AGATGACTACAATTGGGTGTATCTATA 57.398 33.333 10.83 0.00 33.59 1.31
1759 3429 8.497910 AGATGACTACAATTGGGTGTATCTAT 57.502 34.615 10.83 0.00 33.59 1.98
1760 3430 7.785028 AGAGATGACTACAATTGGGTGTATCTA 59.215 37.037 10.83 0.00 33.59 1.98
1761 3431 6.613271 AGAGATGACTACAATTGGGTGTATCT 59.387 38.462 10.83 16.16 33.59 1.98
1762 3432 6.821388 AGAGATGACTACAATTGGGTGTATC 58.179 40.000 10.83 12.63 33.59 2.24
1763 3433 6.183361 GGAGAGATGACTACAATTGGGTGTAT 60.183 42.308 10.83 5.41 33.59 2.29
1764 3434 5.128827 GGAGAGATGACTACAATTGGGTGTA 59.871 44.000 10.83 0.00 32.75 2.90
1765 3435 4.080863 GGAGAGATGACTACAATTGGGTGT 60.081 45.833 10.83 5.22 35.43 4.16
1766 3436 4.446371 GGAGAGATGACTACAATTGGGTG 58.554 47.826 10.83 1.88 0.00 4.61
1767 3437 3.133003 CGGAGAGATGACTACAATTGGGT 59.867 47.826 10.83 8.17 0.00 4.51
1768 3438 3.384789 TCGGAGAGATGACTACAATTGGG 59.615 47.826 10.83 4.82 0.00 4.12
1769 3439 4.142160 TGTCGGAGAGATGACTACAATTGG 60.142 45.833 10.83 0.00 36.95 3.16
1770 3440 4.998788 TGTCGGAGAGATGACTACAATTG 58.001 43.478 3.24 3.24 36.95 2.32
1771 3441 5.186021 ACTTGTCGGAGAGATGACTACAATT 59.814 40.000 0.00 0.00 36.95 2.32
1772 3442 4.707448 ACTTGTCGGAGAGATGACTACAAT 59.293 41.667 0.00 0.00 36.95 2.71
1773 3443 4.079970 ACTTGTCGGAGAGATGACTACAA 58.920 43.478 0.00 0.00 36.95 2.41
1774 3444 3.687125 ACTTGTCGGAGAGATGACTACA 58.313 45.455 0.00 0.00 36.95 2.74
1775 3445 6.380095 AATACTTGTCGGAGAGATGACTAC 57.620 41.667 0.00 0.00 36.95 2.73
1776 3446 6.238402 CGAAATACTTGTCGGAGAGATGACTA 60.238 42.308 0.00 0.00 36.95 2.59
1777 3447 5.449314 CGAAATACTTGTCGGAGAGATGACT 60.449 44.000 0.00 0.00 36.95 3.41
1778 3448 4.735822 CGAAATACTTGTCGGAGAGATGAC 59.264 45.833 0.00 0.00 36.95 3.06
1779 3449 4.921547 CGAAATACTTGTCGGAGAGATGA 58.078 43.478 0.00 0.00 36.95 2.92
1788 3458 1.135315 TCCGTCCCGAAATACTTGTCG 60.135 52.381 0.00 0.00 37.01 4.35
1789 3459 2.537401 CTCCGTCCCGAAATACTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
1790 3460 1.206371 CCTCCGTCCCGAAATACTTGT 59.794 52.381 0.00 0.00 0.00 3.16
1791 3461 1.472728 CCCTCCGTCCCGAAATACTTG 60.473 57.143 0.00 0.00 0.00 3.16
1792 3462 0.828677 CCCTCCGTCCCGAAATACTT 59.171 55.000 0.00 0.00 0.00 2.24
1793 3463 0.032813 TCCCTCCGTCCCGAAATACT 60.033 55.000 0.00 0.00 0.00 2.12
1794 3464 0.388294 CTCCCTCCGTCCCGAAATAC 59.612 60.000 0.00 0.00 0.00 1.89
1795 3465 0.032813 ACTCCCTCCGTCCCGAAATA 60.033 55.000 0.00 0.00 0.00 1.40
1796 3466 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.00 0.00 2.17
1797 3467 0.967380 GTACTCCCTCCGTCCCGAAA 60.967 60.000 0.00 0.00 0.00 3.46
1798 3468 1.379044 GTACTCCCTCCGTCCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
1799 3469 0.982852 TAGTACTCCCTCCGTCCCGA 60.983 60.000 0.00 0.00 0.00 5.14
1800 3470 0.534652 CTAGTACTCCCTCCGTCCCG 60.535 65.000 0.00 0.00 0.00 5.14
1801 3471 0.550432 ACTAGTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
1802 3472 2.433662 AACTAGTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
1803 3473 4.202000 GCTTTAACTAGTACTCCCTCCGTC 60.202 50.000 0.00 0.00 0.00 4.79
1804 3474 3.698539 GCTTTAACTAGTACTCCCTCCGT 59.301 47.826 0.00 0.00 0.00 4.69
1805 3475 3.952967 AGCTTTAACTAGTACTCCCTCCG 59.047 47.826 0.00 0.00 0.00 4.63
1806 3476 4.954826 TCAGCTTTAACTAGTACTCCCTCC 59.045 45.833 0.00 0.00 0.00 4.30
1807 3477 6.527057 TTCAGCTTTAACTAGTACTCCCTC 57.473 41.667 0.00 0.00 0.00 4.30
1808 3478 6.930068 TTTCAGCTTTAACTAGTACTCCCT 57.070 37.500 0.00 0.00 0.00 4.20
1809 3479 7.384477 TCTTTTCAGCTTTAACTAGTACTCCC 58.616 38.462 0.00 0.00 0.00 4.30
1810 3480 8.874816 CATCTTTTCAGCTTTAACTAGTACTCC 58.125 37.037 0.00 0.00 0.00 3.85
1811 3481 9.425577 ACATCTTTTCAGCTTTAACTAGTACTC 57.574 33.333 0.00 0.00 0.00 2.59
1812 3482 9.780186 AACATCTTTTCAGCTTTAACTAGTACT 57.220 29.630 0.00 0.00 0.00 2.73
1814 3484 9.998106 AGAACATCTTTTCAGCTTTAACTAGTA 57.002 29.630 0.00 0.00 0.00 1.82
1815 3485 8.910351 AGAACATCTTTTCAGCTTTAACTAGT 57.090 30.769 0.00 0.00 0.00 2.57
1883 3553 7.925483 TCCAAGACAAACCACTTTTGAATAATG 59.075 33.333 3.81 0.00 46.76 1.90
1917 3599 7.572523 ATCACATAATCATGGTGACGAATTT 57.427 32.000 4.18 0.00 36.39 1.82
1971 3653 2.972625 TCTCGATCAACGCCTGAAATT 58.027 42.857 0.00 0.00 42.26 1.82
2091 3773 7.009179 TGACTCAACCTGATTCTGAAATAGT 57.991 36.000 0.00 0.00 28.78 2.12
2134 3816 9.658475 CACAAAAACGTCTTACATTTTGAGATA 57.342 29.630 21.46 0.00 42.48 1.98
2135 3817 8.188139 ACACAAAAACGTCTTACATTTTGAGAT 58.812 29.630 21.46 8.33 42.48 2.75
2137 3819 7.483375 TGACACAAAAACGTCTTACATTTTGAG 59.517 33.333 21.46 17.24 42.48 3.02
2138 3820 7.306213 TGACACAAAAACGTCTTACATTTTGA 58.694 30.769 21.46 3.06 42.48 2.69
2140 3822 8.522178 TTTGACACAAAAACGTCTTACATTTT 57.478 26.923 0.00 0.00 33.18 1.82
2164 3846 7.981142 TCTGTCTCAAAATGTAAGACGTTTTT 58.019 30.769 6.77 0.00 42.72 1.94
2166 3848 6.202954 CCTCTGTCTCAAAATGTAAGACGTTT 59.797 38.462 0.00 0.00 41.84 3.60
2167 3849 5.696724 CCTCTGTCTCAAAATGTAAGACGTT 59.303 40.000 0.00 0.00 41.84 3.99
2168 3850 5.230942 CCTCTGTCTCAAAATGTAAGACGT 58.769 41.667 0.00 0.00 41.84 4.34
2169 3851 4.627467 CCCTCTGTCTCAAAATGTAAGACG 59.373 45.833 0.00 0.00 41.84 4.18
2170 3852 5.794894 TCCCTCTGTCTCAAAATGTAAGAC 58.205 41.667 0.00 0.00 39.87 3.01
2171 3853 5.544176 ACTCCCTCTGTCTCAAAATGTAAGA 59.456 40.000 0.00 0.00 0.00 2.10
2172 3854 5.799213 ACTCCCTCTGTCTCAAAATGTAAG 58.201 41.667 0.00 0.00 0.00 2.34
2174 3856 6.017192 ACTACTCCCTCTGTCTCAAAATGTA 58.983 40.000 0.00 0.00 0.00 2.29
2175 3857 4.841246 ACTACTCCCTCTGTCTCAAAATGT 59.159 41.667 0.00 0.00 0.00 2.71
2176 3858 5.413309 ACTACTCCCTCTGTCTCAAAATG 57.587 43.478 0.00 0.00 0.00 2.32
2183 3879 4.282195 CAGAAACAACTACTCCCTCTGTCT 59.718 45.833 0.00 0.00 0.00 3.41
2184 3880 4.039366 ACAGAAACAACTACTCCCTCTGTC 59.961 45.833 0.00 0.00 38.02 3.51
2187 3883 5.395611 ACTACAGAAACAACTACTCCCTCT 58.604 41.667 0.00 0.00 0.00 3.69
2251 4011 5.932303 TGCTCCAGTAGTTACAAGAAATGAC 59.068 40.000 0.00 0.00 0.00 3.06
2381 4144 4.511826 GCTCCGGTAATTACAAGAGAATGG 59.488 45.833 26.34 12.52 32.03 3.16
2395 4158 6.040209 TCAAACTAAACTATGCTCCGGTAA 57.960 37.500 0.00 0.00 0.00 2.85
2399 4162 6.721571 TTTCTCAAACTAAACTATGCTCCG 57.278 37.500 0.00 0.00 0.00 4.63
2400 4163 7.803659 GTGTTTTCTCAAACTAAACTATGCTCC 59.196 37.037 0.00 0.00 42.61 4.70
2429 4192 5.239359 TCTTGTATTGCAACATCAGCATC 57.761 39.130 0.00 0.00 42.33 3.91
2493 4614 8.109634 AGAAATGTACAGGTTTAGGATTGTCAT 58.890 33.333 0.33 0.00 0.00 3.06
2507 4628 2.413112 CACGCTGTCAGAAATGTACAGG 59.587 50.000 3.32 0.00 40.76 4.00
2508 4629 3.059884 ACACGCTGTCAGAAATGTACAG 58.940 45.455 3.32 0.00 42.80 2.74
2517 4638 3.676172 CGGTAAATAAACACGCTGTCAGA 59.324 43.478 3.32 0.00 0.00 3.27
2518 4639 3.676172 TCGGTAAATAAACACGCTGTCAG 59.324 43.478 0.00 0.00 0.00 3.51
2557 4678 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2558 4679 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2559 4680 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2560 4681 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2561 4682 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2562 4683 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2563 4684 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2564 4685 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2565 4686 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2566 4687 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2567 4688 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
2568 4689 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2569 4690 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
2570 4691 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
2577 4698 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
2645 4766 8.840321 CCGGAAATACTTGTCATCAAAATAGAT 58.160 33.333 0.00 0.00 32.87 1.98
2646 4767 8.044309 TCCGGAAATACTTGTCATCAAAATAGA 58.956 33.333 0.00 0.00 32.87 1.98
2647 4768 8.122952 GTCCGGAAATACTTGTCATCAAAATAG 58.877 37.037 5.23 0.00 32.87 1.73
2648 4769 7.201574 CGTCCGGAAATACTTGTCATCAAAATA 60.202 37.037 5.23 0.00 32.87 1.40
2649 4770 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2650 4771 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2651 4772 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2652 4773 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2653 4774 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2654 4775 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2655 4776 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2656 4777 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2657 4778 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2658 4779 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2659 4780 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2660 4781 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2661 4782 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2662 4783 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2663 4784 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2664 4785 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2665 4786 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2666 4787 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2667 4788 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
2668 4789 1.041447 AATGTACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
2669 4790 0.822164 AAATGTACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
2670 4791 3.345508 AAAAATGTACTCCCTCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
2754 5508 5.109210 TCTGTTCGCACACCATAATAGAAG 58.891 41.667 0.00 0.00 0.00 2.85
2756 5510 4.729227 TCTGTTCGCACACCATAATAGA 57.271 40.909 0.00 0.00 0.00 1.98
2757 5511 5.991328 ATTCTGTTCGCACACCATAATAG 57.009 39.130 0.00 0.00 0.00 1.73
2771 5526 8.265764 AGTATTTAGTTCCTGGGTATTCTGTTC 58.734 37.037 0.00 0.00 0.00 3.18
2780 5535 6.910290 TGGGTATTAGTATTTAGTTCCTGGGT 59.090 38.462 0.00 0.00 0.00 4.51
2874 5632 3.636764 AGGCCAACCAACTTAAACTCTTG 59.363 43.478 5.01 0.00 39.06 3.02
2879 5637 2.035449 GGTGAGGCCAACCAACTTAAAC 59.965 50.000 19.97 0.00 39.06 2.01
2891 5649 1.729586 AAGTAAGTGAGGTGAGGCCA 58.270 50.000 5.01 0.00 40.61 5.36
2930 5688 9.444600 AAATGTCGTATATTTGTTTACAGAGGT 57.555 29.630 0.00 0.00 0.00 3.85
2947 5705 7.853524 ACGTTTTAGATCACAAAAATGTCGTA 58.146 30.769 14.87 0.00 39.44 3.43
2948 5706 6.721321 ACGTTTTAGATCACAAAAATGTCGT 58.279 32.000 14.87 12.61 39.44 4.34
2949 5707 7.236164 GACGTTTTAGATCACAAAAATGTCG 57.764 36.000 23.15 16.71 44.83 4.35
2968 5726 6.594159 CCCTCTGTCAACAAATATAAGACGTT 59.406 38.462 0.00 0.00 32.08 3.99
2969 5727 6.070995 TCCCTCTGTCAACAAATATAAGACGT 60.071 38.462 0.00 0.00 32.08 4.34
2970 5728 6.338146 TCCCTCTGTCAACAAATATAAGACG 58.662 40.000 0.00 0.00 32.08 4.18
2971 5729 7.331791 ACTCCCTCTGTCAACAAATATAAGAC 58.668 38.462 0.00 0.00 0.00 3.01
2972 5730 7.496346 ACTCCCTCTGTCAACAAATATAAGA 57.504 36.000 0.00 0.00 0.00 2.10
2973 5731 8.478877 ACTACTCCCTCTGTCAACAAATATAAG 58.521 37.037 0.00 0.00 0.00 1.73
2974 5732 8.375493 ACTACTCCCTCTGTCAACAAATATAA 57.625 34.615 0.00 0.00 0.00 0.98
2975 5733 7.973048 ACTACTCCCTCTGTCAACAAATATA 57.027 36.000 0.00 0.00 0.00 0.86
2976 5734 6.875972 ACTACTCCCTCTGTCAACAAATAT 57.124 37.500 0.00 0.00 0.00 1.28
2977 5735 6.681729 AACTACTCCCTCTGTCAACAAATA 57.318 37.500 0.00 0.00 0.00 1.40
2979 5737 5.367945 AAACTACTCCCTCTGTCAACAAA 57.632 39.130 0.00 0.00 0.00 2.83
2980 5738 6.488769 TTAAACTACTCCCTCTGTCAACAA 57.511 37.500 0.00 0.00 0.00 2.83
2982 5740 6.371825 CCAATTAAACTACTCCCTCTGTCAAC 59.628 42.308 0.00 0.00 0.00 3.18
2983 5741 6.043938 ACCAATTAAACTACTCCCTCTGTCAA 59.956 38.462 0.00 0.00 0.00 3.18
2985 5743 5.875359 CACCAATTAAACTACTCCCTCTGTC 59.125 44.000 0.00 0.00 0.00 3.51
2986 5744 5.546499 TCACCAATTAAACTACTCCCTCTGT 59.454 40.000 0.00 0.00 0.00 3.41
2987 5745 6.049955 TCACCAATTAAACTACTCCCTCTG 57.950 41.667 0.00 0.00 0.00 3.35
3149 5931 5.428253 TCTACATCCATGCTTTCAACCTAC 58.572 41.667 0.00 0.00 0.00 3.18
3177 5959 7.007725 CGAATTTTCTTTCATCCATTGAACTCG 59.992 37.037 0.00 0.00 43.99 4.18
3203 5985 4.679373 TGCTTCCTCATATGTCTCCTTC 57.321 45.455 1.90 0.00 0.00 3.46
3305 6087 3.599343 TGAGACATTGACAATTCTCCCG 58.401 45.455 23.19 8.01 34.70 5.14
3371 6153 3.075884 GGTAATTTGCCTTGTACGACCA 58.924 45.455 0.00 0.00 0.00 4.02
3383 6165 8.810652 TCTAATTTGTGAAACTGGTAATTTGC 57.189 30.769 0.00 0.00 38.04 3.68
3482 6268 2.158885 TGCAAGGCCGCACATATACTTA 60.159 45.455 0.59 0.00 36.86 2.24
3489 6275 2.277591 ACAATGCAAGGCCGCACAT 61.278 52.632 7.53 4.55 46.56 3.21
3534 6320 9.569122 GTCTGCAACCTTATATCCCTTATTTAA 57.431 33.333 0.00 0.00 0.00 1.52
3535 6321 8.719596 TGTCTGCAACCTTATATCCCTTATTTA 58.280 33.333 0.00 0.00 0.00 1.40
3536 6322 7.582719 TGTCTGCAACCTTATATCCCTTATTT 58.417 34.615 0.00 0.00 0.00 1.40
3539 6325 6.328934 TCATGTCTGCAACCTTATATCCCTTA 59.671 38.462 0.00 0.00 0.00 2.69
3540 6326 5.132648 TCATGTCTGCAACCTTATATCCCTT 59.867 40.000 0.00 0.00 0.00 3.95
3544 6330 7.502120 AACATCATGTCTGCAACCTTATATC 57.498 36.000 0.00 0.00 0.00 1.63
3547 6333 7.886629 AATAACATCATGTCTGCAACCTTAT 57.113 32.000 0.00 0.00 0.00 1.73
3548 6334 7.392953 TGAAATAACATCATGTCTGCAACCTTA 59.607 33.333 0.00 0.00 0.00 2.69
3550 6336 5.711506 TGAAATAACATCATGTCTGCAACCT 59.288 36.000 0.00 0.00 0.00 3.50
3551 6337 5.953183 TGAAATAACATCATGTCTGCAACC 58.047 37.500 0.00 0.00 0.00 3.77
3555 6341 5.496133 AGCTGAAATAACATCATGTCTGC 57.504 39.130 0.00 0.00 37.37 4.26
3557 6343 8.798859 AGTTAAGCTGAAATAACATCATGTCT 57.201 30.769 8.37 0.00 35.06 3.41
3558 6344 9.282247 CAAGTTAAGCTGAAATAACATCATGTC 57.718 33.333 8.37 0.00 35.06 3.06
3565 6351 9.296400 GACAAAACAAGTTAAGCTGAAATAACA 57.704 29.630 8.37 0.00 35.06 2.41
3566 6352 9.296400 TGACAAAACAAGTTAAGCTGAAATAAC 57.704 29.630 0.00 0.00 33.25 1.89
3576 6460 7.935338 ATTGCATCTGACAAAACAAGTTAAG 57.065 32.000 0.00 0.00 0.00 1.85
3606 6490 4.383010 CCTCCTACAGTACATGCAATCACA 60.383 45.833 0.00 0.00 0.00 3.58
3608 6492 3.134623 CCCTCCTACAGTACATGCAATCA 59.865 47.826 0.00 0.00 0.00 2.57
3609 6493 3.134804 ACCCTCCTACAGTACATGCAATC 59.865 47.826 0.00 0.00 0.00 2.67
3610 6494 3.115390 ACCCTCCTACAGTACATGCAAT 58.885 45.455 0.00 0.00 0.00 3.56
3613 6497 2.236395 ACAACCCTCCTACAGTACATGC 59.764 50.000 0.00 0.00 0.00 4.06
3614 6498 4.553330 AACAACCCTCCTACAGTACATG 57.447 45.455 0.00 0.00 0.00 3.21
3615 6499 5.578157 AAAACAACCCTCCTACAGTACAT 57.422 39.130 0.00 0.00 0.00 2.29
3637 6521 9.982291 GAACACAAAGCTATGATTATCGTTAAA 57.018 29.630 0.00 0.00 0.00 1.52
3638 6522 9.157104 TGAACACAAAGCTATGATTATCGTTAA 57.843 29.630 0.00 0.00 0.00 2.01
3639 6523 8.710835 TGAACACAAAGCTATGATTATCGTTA 57.289 30.769 0.00 0.00 0.00 3.18
3640 6524 7.609760 TGAACACAAAGCTATGATTATCGTT 57.390 32.000 0.00 0.00 0.00 3.85
3641 6525 7.792374 ATGAACACAAAGCTATGATTATCGT 57.208 32.000 0.00 0.00 0.00 3.73
3642 6526 8.337532 TGAATGAACACAAAGCTATGATTATCG 58.662 33.333 0.00 0.00 0.00 2.92
3646 6530 9.715121 AATTTGAATGAACACAAAGCTATGATT 57.285 25.926 0.00 0.00 38.94 2.57
3697 6583 0.606604 AACTCCGTAGCACAATCCGT 59.393 50.000 0.00 0.00 0.00 4.69
3698 6584 1.722011 AAACTCCGTAGCACAATCCG 58.278 50.000 0.00 0.00 0.00 4.18
3699 6585 3.335579 AGAAAACTCCGTAGCACAATCC 58.664 45.455 0.00 0.00 0.00 3.01
3700 6586 6.663944 ATAAGAAAACTCCGTAGCACAATC 57.336 37.500 0.00 0.00 0.00 2.67
3701 6587 6.430000 ACAATAAGAAAACTCCGTAGCACAAT 59.570 34.615 0.00 0.00 0.00 2.71
3702 6588 5.761234 ACAATAAGAAAACTCCGTAGCACAA 59.239 36.000 0.00 0.00 0.00 3.33
3705 6591 5.410439 GGAACAATAAGAAAACTCCGTAGCA 59.590 40.000 0.00 0.00 0.00 3.49
3724 6610 1.496857 TGAAGGATGTGGGTTGGAACA 59.503 47.619 0.00 0.00 0.00 3.18
3725 6611 1.886542 GTGAAGGATGTGGGTTGGAAC 59.113 52.381 0.00 0.00 0.00 3.62
3727 6613 0.036164 CGTGAAGGATGTGGGTTGGA 59.964 55.000 0.00 0.00 0.00 3.53
3729 6615 0.874390 CACGTGAAGGATGTGGGTTG 59.126 55.000 10.90 0.00 37.86 3.77
3732 6618 1.156736 GAACACGTGAAGGATGTGGG 58.843 55.000 25.01 0.00 44.80 4.61
3789 6687 7.826690 ACATGTGCATTAGTTAACTAAAAGGG 58.173 34.615 27.24 18.57 41.27 3.95
3803 6705 1.135431 GCTCGGCAAACATGTGCATTA 60.135 47.619 10.16 0.00 46.81 1.90
3805 6707 1.213537 GCTCGGCAAACATGTGCAT 59.786 52.632 10.16 0.00 46.81 3.96
3806 6708 2.132517 CTGCTCGGCAAACATGTGCA 62.133 55.000 10.16 7.48 46.81 4.57
3807 6709 1.443194 CTGCTCGGCAAACATGTGC 60.443 57.895 0.00 0.00 44.14 4.57
3809 6711 0.593128 GTTCTGCTCGGCAAACATGT 59.407 50.000 0.00 0.00 38.41 3.21
3810 6712 0.877071 AGTTCTGCTCGGCAAACATG 59.123 50.000 17.15 0.00 38.41 3.21
3811 6713 1.537202 GAAGTTCTGCTCGGCAAACAT 59.463 47.619 17.15 10.77 38.41 2.71
3817 6719 0.944386 TTGTTGAAGTTCTGCTCGGC 59.056 50.000 4.17 0.00 0.00 5.54
3819 6721 1.858458 TCGTTGTTGAAGTTCTGCTCG 59.142 47.619 4.17 3.58 0.00 5.03
3836 6738 7.306632 CGTTAAACTCATTCTTCAGTTCTTCGT 60.307 37.037 0.00 0.00 31.38 3.85
3887 6789 3.118956 CGAATCCAACAGCTCCTCTAGTT 60.119 47.826 0.00 0.00 0.00 2.24
3987 6889 1.188863 ATGCATTGAGGGTGGCTTTC 58.811 50.000 0.00 0.00 0.00 2.62
3993 6895 2.424601 CCTTGTGTATGCATTGAGGGTG 59.575 50.000 3.54 0.00 0.00 4.61
3994 6896 2.308570 TCCTTGTGTATGCATTGAGGGT 59.691 45.455 3.54 0.00 0.00 4.34
4029 6931 1.419381 TGATGCGCATCCTAGGGTAA 58.581 50.000 39.46 20.94 37.02 2.85
4316 7224 2.100584 ACACACACGCATGTCCATTTTT 59.899 40.909 0.00 0.00 36.72 1.94
4317 7225 1.680735 ACACACACGCATGTCCATTTT 59.319 42.857 0.00 0.00 36.72 1.82
4510 7995 5.303747 TGAAACGTTCACACATCAAAACT 57.696 34.783 0.00 0.00 34.08 2.66
4526 9660 4.387256 TCAACTTTTGGCAAGTTTGAAACG 59.613 37.500 14.29 0.00 38.32 3.60
4551 9685 4.819630 ACGATTTAGCAACCTCACAAAAGA 59.180 37.500 0.00 0.00 0.00 2.52
4573 9709 1.154413 CGGCACAAACATCGAGCAC 60.154 57.895 0.00 0.00 0.00 4.40
4624 9763 0.033090 CTTATAACGGCTCCGGTCCC 59.967 60.000 13.31 1.70 44.69 4.46
4658 9801 1.901833 ACGGTAATGGTTACGGGAGTT 59.098 47.619 10.72 0.00 43.33 3.01
4665 9808 6.803642 AGTTATCTGAGACGGTAATGGTTAC 58.196 40.000 0.00 0.00 35.39 2.50
4673 9822 7.893124 AAATCCTAAGTTATCTGAGACGGTA 57.107 36.000 0.00 0.00 0.00 4.02
4797 9948 3.717294 CAGGTTGGGGAGGACGGG 61.717 72.222 0.00 0.00 0.00 5.28
4800 9951 2.366153 TTTGGCAGGTTGGGGAGGAC 62.366 60.000 0.00 0.00 0.00 3.85
4831 10005 2.202960 GCGTGTATGGGCGGCTAA 60.203 61.111 9.56 0.00 0.00 3.09
4832 10006 1.393487 TAAGCGTGTATGGGCGGCTA 61.393 55.000 9.56 1.93 0.00 3.93
4833 10007 2.644555 CTAAGCGTGTATGGGCGGCT 62.645 60.000 9.56 0.00 0.00 5.52
4834 10008 2.202960 TAAGCGTGTATGGGCGGC 60.203 61.111 0.00 0.00 0.00 6.53
4835 10009 2.244651 GCTAAGCGTGTATGGGCGG 61.245 63.158 0.00 0.00 0.00 6.13
4836 10010 1.490693 CTGCTAAGCGTGTATGGGCG 61.491 60.000 0.00 0.00 0.00 6.13
4837 10011 1.776034 GCTGCTAAGCGTGTATGGGC 61.776 60.000 0.00 0.00 40.27 5.36
4838 10012 2.311294 GCTGCTAAGCGTGTATGGG 58.689 57.895 0.00 0.00 40.27 4.00
4848 10022 1.263776 CGACGTCAAGAGCTGCTAAG 58.736 55.000 17.16 0.00 0.00 2.18
4849 10023 0.732880 GCGACGTCAAGAGCTGCTAA 60.733 55.000 17.16 0.00 0.00 3.09
4850 10024 1.154016 GCGACGTCAAGAGCTGCTA 60.154 57.895 17.16 0.00 0.00 3.49
4851 10025 1.587043 TAGCGACGTCAAGAGCTGCT 61.587 55.000 21.30 18.02 37.73 4.24
4852 10026 0.526524 ATAGCGACGTCAAGAGCTGC 60.527 55.000 21.30 12.41 37.73 5.25
4891 10065 1.137675 CAGTCGATGAGATTCCTGCCA 59.862 52.381 0.00 0.00 0.00 4.92
4892 10066 1.863267 CAGTCGATGAGATTCCTGCC 58.137 55.000 0.00 0.00 0.00 4.85
4949 10126 2.042843 ACCTCGAAGCCGATCCCT 60.043 61.111 0.00 0.00 44.62 4.20
5117 10294 0.884704 TGAGAAAACCAGCCAGCGTC 60.885 55.000 0.00 0.00 0.00 5.19
5190 10368 2.141517 GCAGCTAGCAGATGTGGTATG 58.858 52.381 18.83 3.10 44.79 2.39
5214 11067 0.310854 CACCGGTGCTTCAAACCTTC 59.689 55.000 24.02 0.00 35.39 3.46
5236 11089 0.904649 TCATCCGAGCACAACCATCT 59.095 50.000 0.00 0.00 0.00 2.90
5242 11095 1.469703 CTGCAAATCATCCGAGCACAA 59.530 47.619 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.