Multiple sequence alignment - TraesCS2B01G388000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G388000 chr2B 100.000 3104 0 0 1 3104 551257673 551260776 0.000000e+00 5733.0
1 TraesCS2B01G388000 chr2A 94.990 1916 70 13 643 2554 613439578 613441471 0.000000e+00 2983.0
2 TraesCS2B01G388000 chr2A 86.127 519 66 5 2585 3099 613442929 613443445 3.500000e-154 555.0
3 TraesCS2B01G388000 chr2D 93.046 1927 85 15 643 2554 472069776 472071668 0.000000e+00 2771.0
4 TraesCS2B01G388000 chr2D 85.880 517 69 3 2586 3099 472072855 472073370 5.850000e-152 547.0
5 TraesCS2B01G388000 chr2D 82.449 490 59 14 2076 2559 472072391 472072859 1.340000e-108 403.0
6 TraesCS2B01G388000 chr6B 90.780 141 13 0 1000 1140 476715734 476715594 4.090000e-44 189.0
7 TraesCS2B01G388000 chr6B 91.304 46 3 1 2912 2956 713843772 713843727 9.290000e-06 62.1
8 TraesCS2B01G388000 chr6A 90.647 139 13 0 1000 1138 445779111 445778973 5.290000e-43 185.0
9 TraesCS2B01G388000 chr6D 89.130 46 4 1 2912 2956 467844520 467844475 4.320000e-04 56.5
10 TraesCS2B01G388000 chr3D 100.000 28 0 0 567 594 492871759 492871786 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G388000 chr2B 551257673 551260776 3103 False 5733.000000 5733 100.0000 1 3104 1 chr2B.!!$F1 3103
1 TraesCS2B01G388000 chr2A 613439578 613443445 3867 False 1769.000000 2983 90.5585 643 3099 2 chr2A.!!$F1 2456
2 TraesCS2B01G388000 chr2D 472069776 472073370 3594 False 1240.333333 2771 87.1250 643 3099 3 chr2D.!!$F1 2456

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 565 0.044161 CTCTATAAACACGCGCGCAC 60.044 55.0 32.58 2.05 0.0 5.34 F
566 567 0.583083 CTATAAACACGCGCGCACAC 60.583 55.0 32.58 0.72 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1524 1538 0.102481 GCTTGGCTCATGCATGAAGG 59.898 55.0 28.39 19.25 41.91 3.46 R
2138 2159 0.111061 TGAATTCCAGGCTGTGCTGT 59.889 50.0 14.43 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.618702 TTGCCATGAAAAATTATTCAATGTGT 57.381 26.923 0.00 0.00 42.22 3.72
31 32 9.716531 TTGCCATGAAAAATTATTCAATGTGTA 57.283 25.926 0.00 0.00 42.22 2.90
32 33 9.887629 TGCCATGAAAAATTATTCAATGTGTAT 57.112 25.926 0.00 0.00 42.22 2.29
48 49 9.039870 TCAATGTGTATTTGAAAAATGTTGACC 57.960 29.630 0.00 0.00 0.00 4.02
49 50 8.824781 CAATGTGTATTTGAAAAATGTTGACCA 58.175 29.630 0.00 0.00 0.00 4.02
50 51 9.558396 AATGTGTATTTGAAAAATGTTGACCAT 57.442 25.926 0.00 0.00 34.36 3.55
51 52 8.362860 TGTGTATTTGAAAAATGTTGACCATG 57.637 30.769 0.00 0.00 32.82 3.66
52 53 7.984050 TGTGTATTTGAAAAATGTTGACCATGT 59.016 29.630 0.00 0.00 32.82 3.21
53 54 9.469807 GTGTATTTGAAAAATGTTGACCATGTA 57.530 29.630 0.00 0.00 32.82 2.29
99 100 9.553064 AACCACATATTAAAAGAAAAATGTGCA 57.447 25.926 7.55 0.00 41.66 4.57
100 101 9.723601 ACCACATATTAAAAGAAAAATGTGCAT 57.276 25.926 7.55 0.00 41.66 3.96
102 103 9.890085 CACATATTAAAAGAAAAATGTGCATCG 57.110 29.630 0.00 0.00 38.19 3.84
103 104 9.638239 ACATATTAAAAGAAAAATGTGCATCGT 57.362 25.926 0.00 0.00 30.02 3.73
104 105 9.890085 CATATTAAAAGAAAAATGTGCATCGTG 57.110 29.630 0.00 0.00 0.00 4.35
105 106 7.945033 ATTAAAAGAAAAATGTGCATCGTGT 57.055 28.000 0.00 0.00 0.00 4.49
107 108 9.638239 ATTAAAAGAAAAATGTGCATCGTGTAT 57.362 25.926 0.00 0.00 0.00 2.29
108 109 7.945033 AAAAGAAAAATGTGCATCGTGTATT 57.055 28.000 0.00 0.00 0.00 1.89
109 110 7.945033 AAAGAAAAATGTGCATCGTGTATTT 57.055 28.000 0.00 0.00 0.00 1.40
110 111 6.932901 AGAAAAATGTGCATCGTGTATTTG 57.067 33.333 0.00 0.00 0.00 2.32
111 112 6.676950 AGAAAAATGTGCATCGTGTATTTGA 58.323 32.000 0.00 0.00 0.00 2.69
112 113 7.144661 AGAAAAATGTGCATCGTGTATTTGAA 58.855 30.769 0.00 0.00 0.00 2.69
113 114 7.651304 AGAAAAATGTGCATCGTGTATTTGAAA 59.349 29.630 0.00 0.00 0.00 2.69
114 115 7.706281 AAAATGTGCATCGTGTATTTGAAAA 57.294 28.000 0.00 0.00 0.00 2.29
115 116 7.706281 AAATGTGCATCGTGTATTTGAAAAA 57.294 28.000 0.00 0.00 0.00 1.94
116 117 7.887996 AATGTGCATCGTGTATTTGAAAAAT 57.112 28.000 0.00 0.00 0.00 1.82
117 118 8.978564 AATGTGCATCGTGTATTTGAAAAATA 57.021 26.923 0.00 0.00 0.00 1.40
118 119 8.978564 ATGTGCATCGTGTATTTGAAAAATAA 57.021 26.923 0.00 0.00 0.00 1.40
119 120 8.978564 TGTGCATCGTGTATTTGAAAAATAAT 57.021 26.923 0.00 0.00 0.00 1.28
120 121 9.416794 TGTGCATCGTGTATTTGAAAAATAATT 57.583 25.926 0.00 0.00 0.00 1.40
126 127 9.828852 TCGTGTATTTGAAAAATAATTAAGCGT 57.171 25.926 0.00 0.00 0.00 5.07
127 128 9.865642 CGTGTATTTGAAAAATAATTAAGCGTG 57.134 29.630 0.00 0.00 0.00 5.34
200 201 8.742554 AAAAAGGAGATATGTGTTTAAAAGCG 57.257 30.769 0.00 0.00 0.00 4.68
201 202 5.485662 AGGAGATATGTGTTTAAAAGCGC 57.514 39.130 0.00 0.00 0.00 5.92
202 203 4.941263 AGGAGATATGTGTTTAAAAGCGCA 59.059 37.500 11.47 0.00 34.23 6.09
203 204 5.590259 AGGAGATATGTGTTTAAAAGCGCAT 59.410 36.000 11.47 9.92 41.95 4.73
204 205 5.682862 GGAGATATGTGTTTAAAAGCGCATG 59.317 40.000 11.47 0.00 39.97 4.06
205 206 6.435430 AGATATGTGTTTAAAAGCGCATGA 57.565 33.333 11.47 0.00 39.97 3.07
206 207 6.851609 AGATATGTGTTTAAAAGCGCATGAA 58.148 32.000 11.47 0.00 39.97 2.57
207 208 7.312154 AGATATGTGTTTAAAAGCGCATGAAA 58.688 30.769 11.47 0.15 39.97 2.69
208 209 7.812191 AGATATGTGTTTAAAAGCGCATGAAAA 59.188 29.630 11.47 1.67 39.97 2.29
209 210 5.382573 TGTGTTTAAAAGCGCATGAAAAC 57.617 34.783 11.47 14.92 0.00 2.43
210 211 5.105752 TGTGTTTAAAAGCGCATGAAAACT 58.894 33.333 11.47 0.00 0.00 2.66
211 212 5.005203 TGTGTTTAAAAGCGCATGAAAACTG 59.995 36.000 11.47 0.00 0.00 3.16
212 213 5.231147 GTGTTTAAAAGCGCATGAAAACTGA 59.769 36.000 11.47 0.00 0.00 3.41
213 214 5.231147 TGTTTAAAAGCGCATGAAAACTGAC 59.769 36.000 11.47 0.00 0.00 3.51
214 215 3.435105 AAAAGCGCATGAAAACTGACA 57.565 38.095 11.47 0.00 0.00 3.58
215 216 3.435105 AAAGCGCATGAAAACTGACAA 57.565 38.095 11.47 0.00 0.00 3.18
216 217 3.648339 AAGCGCATGAAAACTGACAAT 57.352 38.095 11.47 0.00 0.00 2.71
217 218 4.764679 AAGCGCATGAAAACTGACAATA 57.235 36.364 11.47 0.00 0.00 1.90
218 219 4.346734 AGCGCATGAAAACTGACAATAG 57.653 40.909 11.47 0.00 0.00 1.73
219 220 4.002982 AGCGCATGAAAACTGACAATAGA 58.997 39.130 11.47 0.00 0.00 1.98
220 221 4.455533 AGCGCATGAAAACTGACAATAGAA 59.544 37.500 11.47 0.00 0.00 2.10
221 222 5.048782 AGCGCATGAAAACTGACAATAGAAA 60.049 36.000 11.47 0.00 0.00 2.52
222 223 5.059710 GCGCATGAAAACTGACAATAGAAAC 59.940 40.000 0.30 0.00 0.00 2.78
223 224 6.142139 CGCATGAAAACTGACAATAGAAACA 58.858 36.000 0.00 0.00 0.00 2.83
224 225 6.636447 CGCATGAAAACTGACAATAGAAACAA 59.364 34.615 0.00 0.00 0.00 2.83
225 226 7.326789 CGCATGAAAACTGACAATAGAAACAAT 59.673 33.333 0.00 0.00 0.00 2.71
226 227 9.624697 GCATGAAAACTGACAATAGAAACAATA 57.375 29.630 0.00 0.00 0.00 1.90
235 236 9.626045 CTGACAATAGAAACAATAAAGGAAACC 57.374 33.333 0.00 0.00 0.00 3.27
236 237 9.137459 TGACAATAGAAACAATAAAGGAAACCA 57.863 29.630 0.00 0.00 0.00 3.67
237 238 9.974980 GACAATAGAAACAATAAAGGAAACCAA 57.025 29.630 0.00 0.00 0.00 3.67
243 244 9.952030 AGAAACAATAAAGGAAACCAAAGAAAA 57.048 25.926 0.00 0.00 0.00 2.29
263 264 5.452078 AAAAATGCAGTGAAATCCGAGAA 57.548 34.783 0.00 0.00 0.00 2.87
264 265 5.452078 AAAATGCAGTGAAATCCGAGAAA 57.548 34.783 0.00 0.00 0.00 2.52
265 266 5.649782 AAATGCAGTGAAATCCGAGAAAT 57.350 34.783 0.00 0.00 0.00 2.17
266 267 6.757897 AAATGCAGTGAAATCCGAGAAATA 57.242 33.333 0.00 0.00 0.00 1.40
267 268 6.757897 AATGCAGTGAAATCCGAGAAATAA 57.242 33.333 0.00 0.00 0.00 1.40
268 269 5.545658 TGCAGTGAAATCCGAGAAATAAC 57.454 39.130 0.00 0.00 0.00 1.89
269 270 5.000591 TGCAGTGAAATCCGAGAAATAACA 58.999 37.500 0.00 0.00 0.00 2.41
270 271 5.471797 TGCAGTGAAATCCGAGAAATAACAA 59.528 36.000 0.00 0.00 0.00 2.83
271 272 6.016693 TGCAGTGAAATCCGAGAAATAACAAA 60.017 34.615 0.00 0.00 0.00 2.83
272 273 6.524586 GCAGTGAAATCCGAGAAATAACAAAG 59.475 38.462 0.00 0.00 0.00 2.77
273 274 7.573096 GCAGTGAAATCCGAGAAATAACAAAGA 60.573 37.037 0.00 0.00 0.00 2.52
274 275 8.289618 CAGTGAAATCCGAGAAATAACAAAGAA 58.710 33.333 0.00 0.00 0.00 2.52
275 276 8.846211 AGTGAAATCCGAGAAATAACAAAGAAA 58.154 29.630 0.00 0.00 0.00 2.52
276 277 9.626045 GTGAAATCCGAGAAATAACAAAGAAAT 57.374 29.630 0.00 0.00 0.00 2.17
277 278 9.840427 TGAAATCCGAGAAATAACAAAGAAATC 57.160 29.630 0.00 0.00 0.00 2.17
278 279 9.290483 GAAATCCGAGAAATAACAAAGAAATCC 57.710 33.333 0.00 0.00 0.00 3.01
279 280 7.938140 ATCCGAGAAATAACAAAGAAATCCA 57.062 32.000 0.00 0.00 0.00 3.41
280 281 7.377766 TCCGAGAAATAACAAAGAAATCCAG 57.622 36.000 0.00 0.00 0.00 3.86
281 282 6.940298 TCCGAGAAATAACAAAGAAATCCAGT 59.060 34.615 0.00 0.00 0.00 4.00
282 283 7.023575 CCGAGAAATAACAAAGAAATCCAGTG 58.976 38.462 0.00 0.00 0.00 3.66
283 284 7.094805 CCGAGAAATAACAAAGAAATCCAGTGA 60.095 37.037 0.00 0.00 0.00 3.41
284 285 8.289618 CGAGAAATAACAAAGAAATCCAGTGAA 58.710 33.333 0.00 0.00 0.00 3.18
285 286 9.965824 GAGAAATAACAAAGAAATCCAGTGAAA 57.034 29.630 0.00 0.00 0.00 2.69
288 289 9.883142 AAATAACAAAGAAATCCAGTGAAAACA 57.117 25.926 0.00 0.00 0.00 2.83
291 292 8.871686 AACAAAGAAATCCAGTGAAAACATAC 57.128 30.769 0.00 0.00 0.00 2.39
292 293 8.006298 ACAAAGAAATCCAGTGAAAACATACA 57.994 30.769 0.00 0.00 0.00 2.29
293 294 8.474025 ACAAAGAAATCCAGTGAAAACATACAA 58.526 29.630 0.00 0.00 0.00 2.41
294 295 9.311916 CAAAGAAATCCAGTGAAAACATACAAA 57.688 29.630 0.00 0.00 0.00 2.83
295 296 9.883142 AAAGAAATCCAGTGAAAACATACAAAA 57.117 25.926 0.00 0.00 0.00 2.44
296 297 9.883142 AAGAAATCCAGTGAAAACATACAAAAA 57.117 25.926 0.00 0.00 0.00 1.94
297 298 9.533253 AGAAATCCAGTGAAAACATACAAAAAG 57.467 29.630 0.00 0.00 0.00 2.27
298 299 9.528018 GAAATCCAGTGAAAACATACAAAAAGA 57.472 29.630 0.00 0.00 0.00 2.52
299 300 9.883142 AAATCCAGTGAAAACATACAAAAAGAA 57.117 25.926 0.00 0.00 0.00 2.52
300 301 9.883142 AATCCAGTGAAAACATACAAAAAGAAA 57.117 25.926 0.00 0.00 0.00 2.52
301 302 8.925161 TCCAGTGAAAACATACAAAAAGAAAG 57.075 30.769 0.00 0.00 0.00 2.62
302 303 8.744652 TCCAGTGAAAACATACAAAAAGAAAGA 58.255 29.630 0.00 0.00 0.00 2.52
303 304 9.364989 CCAGTGAAAACATACAAAAAGAAAGAA 57.635 29.630 0.00 0.00 0.00 2.52
320 321 8.689251 AAGAAAGAAAAGAGTAAAAACAGTGC 57.311 30.769 0.00 0.00 0.00 4.40
321 322 7.826690 AGAAAGAAAAGAGTAAAAACAGTGCA 58.173 30.769 0.00 0.00 0.00 4.57
322 323 8.303876 AGAAAGAAAAGAGTAAAAACAGTGCAA 58.696 29.630 0.00 0.00 0.00 4.08
323 324 8.825667 AAAGAAAAGAGTAAAAACAGTGCAAA 57.174 26.923 0.00 0.00 0.00 3.68
324 325 7.812309 AGAAAAGAGTAAAAACAGTGCAAAC 57.188 32.000 0.00 0.00 0.00 2.93
325 326 6.811665 AGAAAAGAGTAAAAACAGTGCAAACC 59.188 34.615 0.00 0.00 0.00 3.27
326 327 5.652994 AAGAGTAAAAACAGTGCAAACCA 57.347 34.783 0.00 0.00 0.00 3.67
327 328 5.652994 AGAGTAAAAACAGTGCAAACCAA 57.347 34.783 0.00 0.00 0.00 3.67
328 329 6.031751 AGAGTAAAAACAGTGCAAACCAAA 57.968 33.333 0.00 0.00 0.00 3.28
329 330 6.459923 AGAGTAAAAACAGTGCAAACCAAAA 58.540 32.000 0.00 0.00 0.00 2.44
330 331 6.931840 AGAGTAAAAACAGTGCAAACCAAAAA 59.068 30.769 0.00 0.00 0.00 1.94
349 350 4.811969 AAAAGAAACAAAGAAACCCGGT 57.188 36.364 0.00 0.00 0.00 5.28
350 351 3.793797 AAGAAACAAAGAAACCCGGTG 57.206 42.857 0.00 0.00 0.00 4.94
351 352 3.007473 AGAAACAAAGAAACCCGGTGA 57.993 42.857 0.00 0.00 0.00 4.02
352 353 3.358118 AGAAACAAAGAAACCCGGTGAA 58.642 40.909 0.00 0.00 0.00 3.18
353 354 3.764972 AGAAACAAAGAAACCCGGTGAAA 59.235 39.130 0.00 0.00 0.00 2.69
354 355 4.221041 AGAAACAAAGAAACCCGGTGAAAA 59.779 37.500 0.00 0.00 0.00 2.29
355 356 4.538746 AACAAAGAAACCCGGTGAAAAA 57.461 36.364 0.00 0.00 0.00 1.94
356 357 4.118093 ACAAAGAAACCCGGTGAAAAAG 57.882 40.909 0.00 0.00 0.00 2.27
357 358 2.863740 CAAAGAAACCCGGTGAAAAAGC 59.136 45.455 0.00 0.00 0.00 3.51
358 359 1.770294 AGAAACCCGGTGAAAAAGCA 58.230 45.000 0.00 0.00 0.00 3.91
359 360 2.104170 AGAAACCCGGTGAAAAAGCAA 58.896 42.857 0.00 0.00 0.00 3.91
360 361 2.498078 AGAAACCCGGTGAAAAAGCAAA 59.502 40.909 0.00 0.00 0.00 3.68
361 362 2.595124 AACCCGGTGAAAAAGCAAAG 57.405 45.000 0.00 0.00 0.00 2.77
362 363 1.770294 ACCCGGTGAAAAAGCAAAGA 58.230 45.000 0.00 0.00 0.00 2.52
363 364 2.104170 ACCCGGTGAAAAAGCAAAGAA 58.896 42.857 0.00 0.00 0.00 2.52
364 365 2.498078 ACCCGGTGAAAAAGCAAAGAAA 59.502 40.909 0.00 0.00 0.00 2.52
365 366 3.055747 ACCCGGTGAAAAAGCAAAGAAAA 60.056 39.130 0.00 0.00 0.00 2.29
366 367 4.126437 CCCGGTGAAAAAGCAAAGAAAAT 58.874 39.130 0.00 0.00 0.00 1.82
367 368 5.163395 ACCCGGTGAAAAAGCAAAGAAAATA 60.163 36.000 0.00 0.00 0.00 1.40
368 369 5.405269 CCCGGTGAAAAAGCAAAGAAAATAG 59.595 40.000 0.00 0.00 0.00 1.73
369 370 6.212955 CCGGTGAAAAAGCAAAGAAAATAGA 58.787 36.000 0.00 0.00 0.00 1.98
370 371 6.699642 CCGGTGAAAAAGCAAAGAAAATAGAA 59.300 34.615 0.00 0.00 0.00 2.10
371 372 7.223777 CCGGTGAAAAAGCAAAGAAAATAGAAA 59.776 33.333 0.00 0.00 0.00 2.52
372 373 8.599774 CGGTGAAAAAGCAAAGAAAATAGAAAA 58.400 29.630 0.00 0.00 0.00 2.29
390 391 2.951457 AAAACCGGATAAAATGGGCG 57.049 45.000 9.46 0.00 0.00 6.13
391 392 2.131776 AAACCGGATAAAATGGGCGA 57.868 45.000 9.46 0.00 0.00 5.54
392 393 1.675552 AACCGGATAAAATGGGCGAG 58.324 50.000 9.46 0.00 0.00 5.03
393 394 0.818040 ACCGGATAAAATGGGCGAGC 60.818 55.000 9.46 0.00 0.00 5.03
394 395 0.817634 CCGGATAAAATGGGCGAGCA 60.818 55.000 0.00 0.00 0.00 4.26
395 396 1.021202 CGGATAAAATGGGCGAGCAA 58.979 50.000 0.00 0.00 0.00 3.91
396 397 1.403679 CGGATAAAATGGGCGAGCAAA 59.596 47.619 0.00 0.00 0.00 3.68
397 398 2.794631 CGGATAAAATGGGCGAGCAAAC 60.795 50.000 0.00 0.00 0.00 2.93
398 399 2.165437 GGATAAAATGGGCGAGCAAACA 59.835 45.455 0.00 0.00 0.00 2.83
399 400 3.367910 GGATAAAATGGGCGAGCAAACAA 60.368 43.478 0.00 0.00 0.00 2.83
400 401 2.611225 AAAATGGGCGAGCAAACAAA 57.389 40.000 0.00 0.00 0.00 2.83
401 402 2.153366 AAATGGGCGAGCAAACAAAG 57.847 45.000 0.00 0.00 0.00 2.77
402 403 1.327303 AATGGGCGAGCAAACAAAGA 58.673 45.000 0.00 0.00 0.00 2.52
403 404 1.327303 ATGGGCGAGCAAACAAAGAA 58.673 45.000 0.00 0.00 0.00 2.52
404 405 1.107114 TGGGCGAGCAAACAAAGAAA 58.893 45.000 0.00 0.00 0.00 2.52
405 406 1.478510 TGGGCGAGCAAACAAAGAAAA 59.521 42.857 0.00 0.00 0.00 2.29
406 407 2.093973 TGGGCGAGCAAACAAAGAAAAA 60.094 40.909 0.00 0.00 0.00 1.94
407 408 3.130633 GGGCGAGCAAACAAAGAAAAAT 58.869 40.909 0.00 0.00 0.00 1.82
408 409 4.202161 TGGGCGAGCAAACAAAGAAAAATA 60.202 37.500 0.00 0.00 0.00 1.40
409 410 4.385748 GGGCGAGCAAACAAAGAAAAATAG 59.614 41.667 0.00 0.00 0.00 1.73
410 411 5.219633 GGCGAGCAAACAAAGAAAAATAGA 58.780 37.500 0.00 0.00 0.00 1.98
411 412 5.689961 GGCGAGCAAACAAAGAAAAATAGAA 59.310 36.000 0.00 0.00 0.00 2.10
412 413 6.200097 GGCGAGCAAACAAAGAAAAATAGAAA 59.800 34.615 0.00 0.00 0.00 2.52
413 414 7.276495 GCGAGCAAACAAAGAAAAATAGAAAG 58.724 34.615 0.00 0.00 0.00 2.62
414 415 7.167468 GCGAGCAAACAAAGAAAAATAGAAAGA 59.833 33.333 0.00 0.00 0.00 2.52
415 416 9.019764 CGAGCAAACAAAGAAAAATAGAAAGAA 57.980 29.630 0.00 0.00 0.00 2.52
418 419 9.425893 GCAAACAAAGAAAAATAGAAAGAAAGC 57.574 29.630 0.00 0.00 0.00 3.51
442 443 5.524511 AAAAAGAAACAGAAAAACCGTGC 57.475 34.783 0.00 0.00 0.00 5.34
443 444 2.863401 AGAAACAGAAAAACCGTGCC 57.137 45.000 0.00 0.00 0.00 5.01
444 445 2.096248 AGAAACAGAAAAACCGTGCCA 58.904 42.857 0.00 0.00 0.00 4.92
445 446 2.494073 AGAAACAGAAAAACCGTGCCAA 59.506 40.909 0.00 0.00 0.00 4.52
446 447 3.056465 AGAAACAGAAAAACCGTGCCAAA 60.056 39.130 0.00 0.00 0.00 3.28
447 448 3.320673 AACAGAAAAACCGTGCCAAAA 57.679 38.095 0.00 0.00 0.00 2.44
448 449 2.612604 ACAGAAAAACCGTGCCAAAAC 58.387 42.857 0.00 0.00 0.00 2.43
449 450 1.930503 CAGAAAAACCGTGCCAAAACC 59.069 47.619 0.00 0.00 0.00 3.27
450 451 1.550976 AGAAAAACCGTGCCAAAACCA 59.449 42.857 0.00 0.00 0.00 3.67
451 452 1.930503 GAAAAACCGTGCCAAAACCAG 59.069 47.619 0.00 0.00 0.00 4.00
452 453 1.187087 AAAACCGTGCCAAAACCAGA 58.813 45.000 0.00 0.00 0.00 3.86
453 454 0.458260 AAACCGTGCCAAAACCAGAC 59.542 50.000 0.00 0.00 0.00 3.51
454 455 0.395173 AACCGTGCCAAAACCAGACT 60.395 50.000 0.00 0.00 0.00 3.24
455 456 1.101049 ACCGTGCCAAAACCAGACTG 61.101 55.000 0.00 0.00 0.00 3.51
456 457 0.817634 CCGTGCCAAAACCAGACTGA 60.818 55.000 3.32 0.00 0.00 3.41
457 458 1.021202 CGTGCCAAAACCAGACTGAA 58.979 50.000 3.32 0.00 0.00 3.02
458 459 1.268539 CGTGCCAAAACCAGACTGAAC 60.269 52.381 3.32 0.00 0.00 3.18
459 460 1.748493 GTGCCAAAACCAGACTGAACA 59.252 47.619 3.32 0.00 0.00 3.18
460 461 2.165437 GTGCCAAAACCAGACTGAACAA 59.835 45.455 3.32 0.00 0.00 2.83
461 462 2.828520 TGCCAAAACCAGACTGAACAAA 59.171 40.909 3.32 0.00 0.00 2.83
462 463 3.259374 TGCCAAAACCAGACTGAACAAAA 59.741 39.130 3.32 0.00 0.00 2.44
463 464 3.865164 GCCAAAACCAGACTGAACAAAAG 59.135 43.478 3.32 0.00 0.00 2.27
464 465 4.620567 GCCAAAACCAGACTGAACAAAAGT 60.621 41.667 3.32 0.00 0.00 2.66
465 466 5.393678 GCCAAAACCAGACTGAACAAAAGTA 60.394 40.000 3.32 0.00 0.00 2.24
466 467 6.033966 CCAAAACCAGACTGAACAAAAGTAC 58.966 40.000 3.32 0.00 0.00 2.73
467 468 6.349777 CCAAAACCAGACTGAACAAAAGTACA 60.350 38.462 3.32 0.00 0.00 2.90
468 469 6.827586 AAACCAGACTGAACAAAAGTACAA 57.172 33.333 3.32 0.00 0.00 2.41
469 470 6.436843 AACCAGACTGAACAAAAGTACAAG 57.563 37.500 3.32 0.00 0.00 3.16
470 471 5.497474 ACCAGACTGAACAAAAGTACAAGT 58.503 37.500 3.32 0.00 0.00 3.16
471 472 5.354234 ACCAGACTGAACAAAAGTACAAGTG 59.646 40.000 3.32 0.00 0.00 3.16
472 473 5.354234 CCAGACTGAACAAAAGTACAAGTGT 59.646 40.000 3.32 0.00 0.00 3.55
473 474 6.456988 CCAGACTGAACAAAAGTACAAGTGTC 60.457 42.308 3.32 0.00 0.00 3.67
474 475 5.585047 AGACTGAACAAAAGTACAAGTGTCC 59.415 40.000 0.00 0.00 0.00 4.02
475 476 4.638865 ACTGAACAAAAGTACAAGTGTCCC 59.361 41.667 0.00 0.00 0.00 4.46
476 477 3.949113 TGAACAAAAGTACAAGTGTCCCC 59.051 43.478 0.00 0.00 0.00 4.81
477 478 3.655615 ACAAAAGTACAAGTGTCCCCA 57.344 42.857 0.00 0.00 0.00 4.96
478 479 4.178956 ACAAAAGTACAAGTGTCCCCAT 57.821 40.909 0.00 0.00 0.00 4.00
479 480 4.142038 ACAAAAGTACAAGTGTCCCCATC 58.858 43.478 0.00 0.00 0.00 3.51
480 481 4.141287 CAAAAGTACAAGTGTCCCCATCA 58.859 43.478 0.00 0.00 0.00 3.07
481 482 4.447138 AAAGTACAAGTGTCCCCATCAA 57.553 40.909 0.00 0.00 0.00 2.57
482 483 4.447138 AAGTACAAGTGTCCCCATCAAA 57.553 40.909 0.00 0.00 0.00 2.69
483 484 4.447138 AGTACAAGTGTCCCCATCAAAA 57.553 40.909 0.00 0.00 0.00 2.44
484 485 4.142038 AGTACAAGTGTCCCCATCAAAAC 58.858 43.478 0.00 0.00 0.00 2.43
485 486 2.316108 ACAAGTGTCCCCATCAAAACC 58.684 47.619 0.00 0.00 0.00 3.27
486 487 1.618343 CAAGTGTCCCCATCAAAACCC 59.382 52.381 0.00 0.00 0.00 4.11
487 488 0.856982 AGTGTCCCCATCAAAACCCA 59.143 50.000 0.00 0.00 0.00 4.51
488 489 1.219213 AGTGTCCCCATCAAAACCCAA 59.781 47.619 0.00 0.00 0.00 4.12
489 490 1.343142 GTGTCCCCATCAAAACCCAAC 59.657 52.381 0.00 0.00 0.00 3.77
490 491 0.601057 GTCCCCATCAAAACCCAACG 59.399 55.000 0.00 0.00 0.00 4.10
491 492 0.478942 TCCCCATCAAAACCCAACGA 59.521 50.000 0.00 0.00 0.00 3.85
492 493 1.133450 TCCCCATCAAAACCCAACGAA 60.133 47.619 0.00 0.00 0.00 3.85
493 494 1.899142 CCCCATCAAAACCCAACGAAT 59.101 47.619 0.00 0.00 0.00 3.34
494 495 2.353605 CCCCATCAAAACCCAACGAATG 60.354 50.000 0.00 0.00 0.00 2.67
495 496 2.336667 CCATCAAAACCCAACGAATGC 58.663 47.619 0.00 0.00 0.00 3.56
496 497 2.288702 CCATCAAAACCCAACGAATGCA 60.289 45.455 0.00 0.00 0.00 3.96
497 498 3.388308 CATCAAAACCCAACGAATGCAA 58.612 40.909 0.00 0.00 0.00 4.08
498 499 3.526931 TCAAAACCCAACGAATGCAAA 57.473 38.095 0.00 0.00 0.00 3.68
499 500 3.861840 TCAAAACCCAACGAATGCAAAA 58.138 36.364 0.00 0.00 0.00 2.44
500 501 4.253685 TCAAAACCCAACGAATGCAAAAA 58.746 34.783 0.00 0.00 0.00 1.94
501 502 4.331168 TCAAAACCCAACGAATGCAAAAAG 59.669 37.500 0.00 0.00 0.00 2.27
502 503 3.810310 AACCCAACGAATGCAAAAAGA 57.190 38.095 0.00 0.00 0.00 2.52
503 504 3.092334 ACCCAACGAATGCAAAAAGAC 57.908 42.857 0.00 0.00 0.00 3.01
504 505 2.050691 CCCAACGAATGCAAAAAGACG 58.949 47.619 0.00 0.00 0.00 4.18
505 506 2.542824 CCCAACGAATGCAAAAAGACGT 60.543 45.455 0.00 0.00 35.56 4.34
506 507 3.112580 CCAACGAATGCAAAAAGACGTT 58.887 40.909 0.00 0.00 42.95 3.99
507 508 4.283678 CCAACGAATGCAAAAAGACGTTA 58.716 39.130 0.00 0.00 40.89 3.18
508 509 4.145756 CCAACGAATGCAAAAAGACGTTAC 59.854 41.667 0.00 0.00 40.89 2.50
509 510 4.539509 ACGAATGCAAAAAGACGTTACA 57.460 36.364 0.00 0.00 0.00 2.41
510 511 4.523813 ACGAATGCAAAAAGACGTTACAG 58.476 39.130 0.00 0.00 0.00 2.74
511 512 4.271533 ACGAATGCAAAAAGACGTTACAGA 59.728 37.500 0.00 0.00 0.00 3.41
512 513 4.607235 CGAATGCAAAAAGACGTTACAGAC 59.393 41.667 0.00 0.00 0.00 3.51
513 514 5.493133 AATGCAAAAAGACGTTACAGACA 57.507 34.783 0.00 0.00 0.00 3.41
514 515 4.267357 TGCAAAAAGACGTTACAGACAC 57.733 40.909 0.00 0.00 0.00 3.67
515 516 3.685272 TGCAAAAAGACGTTACAGACACA 59.315 39.130 0.00 0.00 0.00 3.72
516 517 4.201773 TGCAAAAAGACGTTACAGACACAG 60.202 41.667 0.00 0.00 0.00 3.66
517 518 4.785341 GCAAAAAGACGTTACAGACACAGG 60.785 45.833 0.00 0.00 0.00 4.00
518 519 3.814005 AAAGACGTTACAGACACAGGT 57.186 42.857 0.00 0.00 0.00 4.00
519 520 2.795175 AGACGTTACAGACACAGGTG 57.205 50.000 0.00 0.00 0.00 4.00
520 521 1.137513 GACGTTACAGACACAGGTGC 58.862 55.000 0.00 0.00 0.00 5.01
521 522 0.462375 ACGTTACAGACACAGGTGCA 59.538 50.000 0.00 0.00 0.00 4.57
522 523 0.859232 CGTTACAGACACAGGTGCAC 59.141 55.000 8.80 8.80 0.00 4.57
523 524 1.804746 CGTTACAGACACAGGTGCACA 60.805 52.381 20.43 0.00 0.00 4.57
524 525 2.494059 GTTACAGACACAGGTGCACAT 58.506 47.619 20.43 9.24 0.00 3.21
525 526 3.659786 GTTACAGACACAGGTGCACATA 58.340 45.455 20.43 0.00 0.00 2.29
526 527 4.253685 GTTACAGACACAGGTGCACATAT 58.746 43.478 20.43 0.00 0.00 1.78
527 528 5.416083 GTTACAGACACAGGTGCACATATA 58.584 41.667 20.43 0.00 0.00 0.86
528 529 4.760530 ACAGACACAGGTGCACATATAT 57.239 40.909 20.43 0.00 0.00 0.86
529 530 5.869649 ACAGACACAGGTGCACATATATA 57.130 39.130 20.43 0.00 0.00 0.86
530 531 5.601662 ACAGACACAGGTGCACATATATAC 58.398 41.667 20.43 4.19 0.00 1.47
531 532 4.681483 CAGACACAGGTGCACATATATACG 59.319 45.833 20.43 0.38 0.00 3.06
532 533 3.390135 ACACAGGTGCACATATATACGC 58.610 45.455 20.43 0.00 0.00 4.42
533 534 2.408368 CACAGGTGCACATATATACGCG 59.592 50.000 20.43 3.53 0.00 6.01
534 535 2.035449 ACAGGTGCACATATATACGCGT 59.965 45.455 19.17 19.17 0.00 6.01
535 536 3.253921 ACAGGTGCACATATATACGCGTA 59.746 43.478 22.94 22.94 0.00 4.42
536 537 4.082408 ACAGGTGCACATATATACGCGTAT 60.082 41.667 32.13 32.13 0.00 3.06
537 538 5.124297 ACAGGTGCACATATATACGCGTATA 59.876 40.000 33.99 33.99 33.09 1.47
538 539 5.454554 CAGGTGCACATATATACGCGTATAC 59.545 44.000 34.45 23.48 31.52 1.47
539 540 5.124297 AGGTGCACATATATACGCGTATACA 59.876 40.000 34.45 27.09 31.52 2.29
540 541 5.228635 GGTGCACATATATACGCGTATACAC 59.771 44.000 34.45 31.27 31.52 2.90
541 542 6.025896 GTGCACATATATACGCGTATACACT 58.974 40.000 34.45 23.60 31.52 3.55
542 543 6.194142 GTGCACATATATACGCGTATACACTC 59.806 42.308 34.45 22.35 31.52 3.51
543 544 6.128227 TGCACATATATACGCGTATACACTCA 60.128 38.462 34.45 24.11 31.52 3.41
544 545 6.910972 GCACATATATACGCGTATACACTCAT 59.089 38.462 34.45 23.23 31.52 2.90
545 546 7.111732 GCACATATATACGCGTATACACTCATC 59.888 40.741 34.45 19.53 31.52 2.92
546 547 8.336080 CACATATATACGCGTATACACTCATCT 58.664 37.037 34.45 21.12 31.52 2.90
547 548 8.549548 ACATATATACGCGTATACACTCATCTC 58.450 37.037 34.45 0.00 31.52 2.75
548 549 8.766151 CATATATACGCGTATACACTCATCTCT 58.234 37.037 34.45 19.89 31.52 3.10
549 550 9.978044 ATATATACGCGTATACACTCATCTCTA 57.022 33.333 34.45 21.14 31.52 2.43
550 551 8.890124 ATATACGCGTATACACTCATCTCTAT 57.110 34.615 34.45 16.56 31.52 1.98
551 552 9.978044 ATATACGCGTATACACTCATCTCTATA 57.022 33.333 34.45 14.11 31.52 1.31
552 553 8.713737 ATACGCGTATACACTCATCTCTATAA 57.286 34.615 29.34 0.00 0.00 0.98
553 554 7.430992 ACGCGTATACACTCATCTCTATAAA 57.569 36.000 11.67 0.00 0.00 1.40
554 555 7.296660 ACGCGTATACACTCATCTCTATAAAC 58.703 38.462 11.67 0.00 0.00 2.01
555 556 7.041576 ACGCGTATACACTCATCTCTATAAACA 60.042 37.037 11.67 0.00 0.00 2.83
556 557 7.268659 CGCGTATACACTCATCTCTATAAACAC 59.731 40.741 0.00 0.00 0.00 3.32
557 558 7.268659 GCGTATACACTCATCTCTATAAACACG 59.731 40.741 3.32 0.00 0.00 4.49
558 559 7.268659 CGTATACACTCATCTCTATAAACACGC 59.731 40.741 3.32 0.00 0.00 5.34
559 560 4.352039 ACACTCATCTCTATAAACACGCG 58.648 43.478 3.53 3.53 0.00 6.01
560 561 3.180584 CACTCATCTCTATAAACACGCGC 59.819 47.826 5.73 0.00 0.00 6.86
561 562 2.381589 TCATCTCTATAAACACGCGCG 58.618 47.619 30.96 30.96 0.00 6.86
562 563 1.129326 ATCTCTATAAACACGCGCGC 58.871 50.000 32.58 23.91 0.00 6.86
563 564 0.179158 TCTCTATAAACACGCGCGCA 60.179 50.000 32.58 11.00 0.00 6.09
564 565 0.044161 CTCTATAAACACGCGCGCAC 60.044 55.000 32.58 2.05 0.00 5.34
565 566 0.733223 TCTATAAACACGCGCGCACA 60.733 50.000 32.58 11.41 0.00 4.57
566 567 0.583083 CTATAAACACGCGCGCACAC 60.583 55.000 32.58 0.72 0.00 3.82
567 568 1.282930 TATAAACACGCGCGCACACA 61.283 50.000 32.58 13.47 0.00 3.72
568 569 2.757946 ATAAACACGCGCGCACACAC 62.758 55.000 32.58 0.00 0.00 3.82
574 575 3.118454 GCGCGCACACACACCTAT 61.118 61.111 29.10 0.00 0.00 2.57
575 576 2.778026 CGCGCACACACACCTATG 59.222 61.111 8.75 0.00 0.00 2.23
576 577 1.736282 CGCGCACACACACCTATGA 60.736 57.895 8.75 0.00 0.00 2.15
577 578 1.686566 CGCGCACACACACCTATGAG 61.687 60.000 8.75 0.00 0.00 2.90
578 579 1.970917 GCGCACACACACCTATGAGC 61.971 60.000 0.30 0.00 0.00 4.26
579 580 0.670239 CGCACACACACCTATGAGCA 60.670 55.000 0.00 0.00 0.00 4.26
580 581 0.798776 GCACACACACCTATGAGCAC 59.201 55.000 0.00 0.00 0.00 4.40
581 582 1.442769 CACACACACCTATGAGCACC 58.557 55.000 0.00 0.00 0.00 5.01
582 583 1.002430 CACACACACCTATGAGCACCT 59.998 52.381 0.00 0.00 0.00 4.00
583 584 1.699634 ACACACACCTATGAGCACCTT 59.300 47.619 0.00 0.00 0.00 3.50
584 585 2.289694 ACACACACCTATGAGCACCTTC 60.290 50.000 0.00 0.00 0.00 3.46
585 586 1.066858 ACACACCTATGAGCACCTTCG 60.067 52.381 0.00 0.00 0.00 3.79
586 587 1.204704 CACACCTATGAGCACCTTCGA 59.795 52.381 0.00 0.00 0.00 3.71
587 588 1.478510 ACACCTATGAGCACCTTCGAG 59.521 52.381 0.00 0.00 0.00 4.04
588 589 1.751351 CACCTATGAGCACCTTCGAGA 59.249 52.381 0.00 0.00 0.00 4.04
589 590 2.028130 ACCTATGAGCACCTTCGAGAG 58.972 52.381 0.00 0.00 0.00 3.20
590 591 2.302260 CCTATGAGCACCTTCGAGAGA 58.698 52.381 0.00 0.00 39.20 3.10
591 592 2.034053 CCTATGAGCACCTTCGAGAGAC 59.966 54.545 0.00 0.00 41.84 3.36
592 593 0.820871 ATGAGCACCTTCGAGAGACC 59.179 55.000 0.00 0.00 41.84 3.85
593 594 1.137825 GAGCACCTTCGAGAGACCG 59.862 63.158 0.00 0.00 41.84 4.79
594 595 1.587933 GAGCACCTTCGAGAGACCGT 61.588 60.000 0.00 0.00 41.84 4.83
595 596 1.179814 AGCACCTTCGAGAGACCGTT 61.180 55.000 0.00 0.00 41.84 4.44
596 597 1.009389 GCACCTTCGAGAGACCGTTG 61.009 60.000 0.00 0.00 41.84 4.10
597 598 0.596577 CACCTTCGAGAGACCGTTGA 59.403 55.000 0.00 0.00 41.84 3.18
598 599 1.000607 CACCTTCGAGAGACCGTTGAA 60.001 52.381 0.00 0.00 41.84 2.69
599 600 1.684983 ACCTTCGAGAGACCGTTGAAA 59.315 47.619 0.00 0.00 41.84 2.69
600 601 2.101917 ACCTTCGAGAGACCGTTGAAAA 59.898 45.455 0.00 0.00 41.84 2.29
601 602 3.244112 ACCTTCGAGAGACCGTTGAAAAT 60.244 43.478 0.00 0.00 41.84 1.82
602 603 3.368236 CCTTCGAGAGACCGTTGAAAATC 59.632 47.826 0.00 0.00 41.84 2.17
603 604 2.955614 TCGAGAGACCGTTGAAAATCC 58.044 47.619 0.00 0.00 33.31 3.01
604 605 2.561419 TCGAGAGACCGTTGAAAATCCT 59.439 45.455 0.00 0.00 33.31 3.24
605 606 2.668457 CGAGAGACCGTTGAAAATCCTG 59.332 50.000 0.00 0.00 0.00 3.86
606 607 3.614150 CGAGAGACCGTTGAAAATCCTGA 60.614 47.826 0.00 0.00 0.00 3.86
607 608 4.315803 GAGAGACCGTTGAAAATCCTGAA 58.684 43.478 0.00 0.00 0.00 3.02
608 609 4.714632 AGAGACCGTTGAAAATCCTGAAA 58.285 39.130 0.00 0.00 0.00 2.69
609 610 5.316987 AGAGACCGTTGAAAATCCTGAAAT 58.683 37.500 0.00 0.00 0.00 2.17
610 611 6.472887 AGAGACCGTTGAAAATCCTGAAATA 58.527 36.000 0.00 0.00 0.00 1.40
611 612 6.940298 AGAGACCGTTGAAAATCCTGAAATAA 59.060 34.615 0.00 0.00 0.00 1.40
612 613 7.447238 AGAGACCGTTGAAAATCCTGAAATAAA 59.553 33.333 0.00 0.00 0.00 1.40
613 614 8.122472 AGACCGTTGAAAATCCTGAAATAAAT 57.878 30.769 0.00 0.00 0.00 1.40
614 615 8.244113 AGACCGTTGAAAATCCTGAAATAAATC 58.756 33.333 0.00 0.00 0.00 2.17
615 616 7.320399 ACCGTTGAAAATCCTGAAATAAATCC 58.680 34.615 0.00 0.00 0.00 3.01
616 617 7.039363 ACCGTTGAAAATCCTGAAATAAATCCA 60.039 33.333 0.00 0.00 0.00 3.41
617 618 7.489113 CCGTTGAAAATCCTGAAATAAATCCAG 59.511 37.037 0.00 0.00 0.00 3.86
618 619 8.243426 CGTTGAAAATCCTGAAATAAATCCAGA 58.757 33.333 0.00 0.00 0.00 3.86
619 620 9.578439 GTTGAAAATCCTGAAATAAATCCAGAG 57.422 33.333 0.00 0.00 0.00 3.35
620 621 8.884124 TGAAAATCCTGAAATAAATCCAGAGT 57.116 30.769 0.00 0.00 0.00 3.24
621 622 9.973661 TGAAAATCCTGAAATAAATCCAGAGTA 57.026 29.630 0.00 0.00 0.00 2.59
626 627 8.225603 TCCTGAAATAAATCCAGAGTAAATGC 57.774 34.615 0.00 0.00 0.00 3.56
627 628 7.012327 TCCTGAAATAAATCCAGAGTAAATGCG 59.988 37.037 0.00 0.00 0.00 4.73
628 629 7.012327 CCTGAAATAAATCCAGAGTAAATGCGA 59.988 37.037 0.00 0.00 0.00 5.10
629 630 7.919690 TGAAATAAATCCAGAGTAAATGCGAG 58.080 34.615 0.00 0.00 0.00 5.03
630 631 5.931441 ATAAATCCAGAGTAAATGCGAGC 57.069 39.130 0.00 0.00 0.00 5.03
631 632 2.988010 ATCCAGAGTAAATGCGAGCA 57.012 45.000 0.00 0.00 0.00 4.26
632 633 2.760634 TCCAGAGTAAATGCGAGCAA 57.239 45.000 0.57 0.00 0.00 3.91
633 634 3.266510 TCCAGAGTAAATGCGAGCAAT 57.733 42.857 0.57 0.00 0.00 3.56
634 635 4.400529 TCCAGAGTAAATGCGAGCAATA 57.599 40.909 0.57 0.00 0.00 1.90
635 636 4.371786 TCCAGAGTAAATGCGAGCAATAG 58.628 43.478 0.57 0.00 0.00 1.73
636 637 3.496130 CCAGAGTAAATGCGAGCAATAGG 59.504 47.826 0.57 0.00 0.00 2.57
637 638 4.371786 CAGAGTAAATGCGAGCAATAGGA 58.628 43.478 0.57 0.00 0.00 2.94
638 639 4.210120 CAGAGTAAATGCGAGCAATAGGAC 59.790 45.833 0.57 0.00 0.00 3.85
639 640 4.100189 AGAGTAAATGCGAGCAATAGGACT 59.900 41.667 0.57 1.88 0.00 3.85
640 641 4.372656 AGTAAATGCGAGCAATAGGACTC 58.627 43.478 0.57 0.00 0.00 3.36
641 642 3.550437 AAATGCGAGCAATAGGACTCT 57.450 42.857 0.57 0.00 0.00 3.24
685 686 6.760298 GGCAGTATAAGTTCTTTGTAGGGTAC 59.240 42.308 0.00 0.00 0.00 3.34
689 691 6.847421 ATAAGTTCTTTGTAGGGTACGAGT 57.153 37.500 0.00 0.00 0.00 4.18
763 765 4.407296 TCCTCTCCTCCTAAATCAAGCTTC 59.593 45.833 0.00 0.00 0.00 3.86
773 776 3.671008 AATCAAGCTTCTTGCATGCAA 57.329 38.095 30.12 30.12 45.94 4.08
830 833 1.364171 CCCTATGTTCGCTCCGGAG 59.636 63.158 27.83 27.83 0.00 4.63
897 900 2.305052 AGCTATTTTACCTATCGCCCCC 59.695 50.000 0.00 0.00 0.00 5.40
1031 1034 3.248029 CACGCAGGACAAGTGCTC 58.752 61.111 0.00 0.00 38.88 4.26
1032 1035 2.356313 ACGCAGGACAAGTGCTCG 60.356 61.111 10.24 10.24 38.88 5.03
1227 1241 2.325583 TGCACTTCCTTGAACGACTT 57.674 45.000 0.00 0.00 0.00 3.01
1390 1404 4.974645 AGAAGTTCACACCAGGTAATGA 57.025 40.909 5.50 0.00 0.00 2.57
1409 1423 8.444715 GGTAATGAACAATTCACAACGTACATA 58.555 33.333 0.00 0.00 43.48 2.29
1410 1424 9.982291 GTAATGAACAATTCACAACGTACATAT 57.018 29.630 0.00 0.00 43.48 1.78
1460 1474 1.224075 CTGAGAGCTGTGTTGTGTGG 58.776 55.000 0.00 0.00 0.00 4.17
1472 1486 1.163420 TTGTGTGGCGCAGGTAACAG 61.163 55.000 10.83 0.00 41.41 3.16
1504 1518 5.603596 ACAAGAATGAACTGGTACGTACAA 58.396 37.500 26.02 15.38 0.00 2.41
1524 1538 1.678970 CCAGCCCCACAAACCTAGC 60.679 63.158 0.00 0.00 0.00 3.42
1551 1565 3.359033 TGCATGAGCCAAGCTTATCTTT 58.641 40.909 0.00 0.00 39.88 2.52
1658 1674 3.473163 AAGGGCCCCAAGCAAGCTT 62.473 57.895 21.43 0.59 46.50 3.74
1661 1677 2.209315 GGCCCCAAGCAAGCTTTCA 61.209 57.895 4.24 0.00 46.50 2.69
1739 1755 6.059484 TCCACTCGAAAAGGTACAGAAAAAT 58.941 36.000 0.00 0.00 0.00 1.82
1740 1756 6.544564 TCCACTCGAAAAGGTACAGAAAAATT 59.455 34.615 0.00 0.00 0.00 1.82
1741 1757 7.716123 TCCACTCGAAAAGGTACAGAAAAATTA 59.284 33.333 0.00 0.00 0.00 1.40
1742 1758 8.347035 CCACTCGAAAAGGTACAGAAAAATTAA 58.653 33.333 0.00 0.00 0.00 1.40
1815 1833 5.368256 AATCAATCACACTGCTCAACTTC 57.632 39.130 0.00 0.00 0.00 3.01
1881 1899 1.945394 CACAAGAGCTGCTTCAAGTGT 59.055 47.619 2.53 1.35 33.60 3.55
2175 2196 9.202273 TGGAATTCATGCTTGTTATTTTTACAC 57.798 29.630 7.93 0.00 0.00 2.90
2199 2220 0.815095 GTTCTTTATGCCCCAACCCG 59.185 55.000 0.00 0.00 0.00 5.28
2213 2234 1.565288 CAACCCGGTCCCCCTTATTTA 59.435 52.381 0.00 0.00 0.00 1.40
2320 2342 5.431765 CAATCAACTAGTAAGCCTCATGGT 58.568 41.667 0.00 0.00 35.27 3.55
2334 2356 7.716799 AGCCTCATGGTGAAAATTGTATTAA 57.283 32.000 0.00 0.00 35.27 1.40
2369 2392 7.832503 CAAAATTAGCTACTCCCAATTTTGG 57.167 36.000 23.30 12.37 45.64 3.28
2420 2443 6.042093 TGTCTTGGTTAGTCAGAACTCAGAAT 59.958 38.462 0.00 0.00 36.92 2.40
2427 2450 5.282055 AGTCAGAACTCAGAATGACAACA 57.718 39.130 6.91 0.00 42.56 3.33
2454 2477 6.183360 TGGTTAGCCAATATAGCATGTGTTTG 60.183 38.462 0.00 0.00 42.83 2.93
2460 2483 6.183360 GCCAATATAGCATGTGTTTGTGTTTG 60.183 38.462 0.00 0.00 0.00 2.93
2470 2493 7.959651 GCATGTGTTTGTGTTTGTTAATTTCAA 59.040 29.630 0.00 0.00 0.00 2.69
2474 2497 7.954786 GTGTTTGTGTTTGTTAATTTCAACAGG 59.045 33.333 0.00 0.00 39.46 4.00
2478 2501 5.751509 GTGTTTGTTAATTTCAACAGGACCC 59.248 40.000 0.00 0.00 39.46 4.46
2498 2521 9.756571 AGGACCCTTACTGACATATACTAATAG 57.243 37.037 0.00 0.00 0.00 1.73
2554 2577 0.321919 GCTGTCAGATGGCCACTTCA 60.322 55.000 8.16 8.41 0.00 3.02
2555 2578 1.735386 CTGTCAGATGGCCACTTCAG 58.265 55.000 8.16 13.67 0.00 3.02
2556 2579 1.002888 CTGTCAGATGGCCACTTCAGT 59.997 52.381 8.16 0.00 0.00 3.41
2557 2580 1.271001 TGTCAGATGGCCACTTCAGTG 60.271 52.381 8.16 0.00 45.23 3.66
2570 2593 5.461032 CACTTCAGTGGTCTCTTACTCTT 57.539 43.478 0.00 0.00 42.10 2.85
2571 2594 5.848406 CACTTCAGTGGTCTCTTACTCTTT 58.152 41.667 0.00 0.00 42.10 2.52
2572 2595 6.284459 CACTTCAGTGGTCTCTTACTCTTTT 58.716 40.000 0.00 0.00 42.10 2.27
2573 2596 6.763610 CACTTCAGTGGTCTCTTACTCTTTTT 59.236 38.462 0.00 0.00 42.10 1.94
2602 2625 2.281761 AGTGGGCTGTTCCTTGCG 60.282 61.111 0.00 0.00 34.39 4.85
2603 2626 2.594592 GTGGGCTGTTCCTTGCGT 60.595 61.111 0.00 0.00 34.39 5.24
2624 2647 1.293924 GATGACCTCGTTGATGCTGG 58.706 55.000 0.00 0.00 0.00 4.85
2641 2664 2.514824 GCGGACAAGCCCTGATCC 60.515 66.667 0.00 0.00 0.00 3.36
2647 2670 2.688666 AAGCCCTGATCCGCTCCA 60.689 61.111 0.08 0.00 33.09 3.86
2653 2676 2.965831 GCCCTGATCCGCTCCATATATA 59.034 50.000 0.00 0.00 0.00 0.86
2654 2677 3.243907 GCCCTGATCCGCTCCATATATAC 60.244 52.174 0.00 0.00 0.00 1.47
2655 2678 3.960755 CCCTGATCCGCTCCATATATACA 59.039 47.826 0.00 0.00 0.00 2.29
2656 2679 4.590647 CCCTGATCCGCTCCATATATACAT 59.409 45.833 0.00 0.00 0.00 2.29
2668 2691 4.637534 CCATATATACATGGGCTTGTCAGC 59.362 45.833 1.71 0.00 46.52 4.26
2695 2718 3.118992 TCCACATCAGAGTGTGTATCTGC 60.119 47.826 6.32 0.00 46.21 4.26
2709 2732 1.237285 ATCTGCACAACCGTCAAGGC 61.237 55.000 0.00 0.00 46.52 4.35
2720 2743 1.067060 CCGTCAAGGCGTGATGATCTA 59.933 52.381 21.81 0.00 44.89 1.98
2737 2760 6.392625 TGATCTAGCTTACAATAGCGACTT 57.607 37.500 0.00 0.00 45.82 3.01
2740 2763 5.822278 TCTAGCTTACAATAGCGACTTCTG 58.178 41.667 0.00 0.00 45.82 3.02
2757 2780 1.901159 TCTGCATTCAAAATGGGGGTG 59.099 47.619 0.00 0.00 0.00 4.61
2773 2796 2.158813 GGGGTGGTAGTACATGGTGATG 60.159 54.545 2.06 0.00 35.49 3.07
2785 2808 3.826157 ACATGGTGATGTAAGTTTGGTGG 59.174 43.478 0.00 0.00 41.27 4.61
2788 2811 3.117851 TGGTGATGTAAGTTTGGTGGTGA 60.118 43.478 0.00 0.00 0.00 4.02
2803 2826 4.405680 TGGTGGTGATCTCTAAGTACATGG 59.594 45.833 0.00 0.00 0.00 3.66
2808 2831 5.594725 GGTGATCTCTAAGTACATGGTCTCA 59.405 44.000 0.00 0.00 0.00 3.27
2811 2834 6.892456 TGATCTCTAAGTACATGGTCTCAAGT 59.108 38.462 0.00 0.00 0.00 3.16
2817 2840 3.904339 AGTACATGGTCTCAAGTTCTGGT 59.096 43.478 0.00 0.00 0.00 4.00
2828 2851 4.843728 TCAAGTTCTGGTGTGAAAACTCT 58.156 39.130 0.00 0.00 30.99 3.24
2839 2862 5.357257 GTGTGAAAACTCTAGGTGAACTGA 58.643 41.667 0.00 0.00 0.00 3.41
2848 2871 5.152623 TCTAGGTGAACTGATTGAACCTG 57.847 43.478 2.94 0.00 41.34 4.00
2849 2872 4.838423 TCTAGGTGAACTGATTGAACCTGA 59.162 41.667 2.94 0.00 41.34 3.86
2850 2873 4.013267 AGGTGAACTGATTGAACCTGAG 57.987 45.455 0.00 0.00 39.78 3.35
2863 2886 5.304686 TGAACCTGAGAATGGTAGTGTTT 57.695 39.130 0.00 0.00 36.69 2.83
2864 2887 5.690865 TGAACCTGAGAATGGTAGTGTTTT 58.309 37.500 0.00 0.00 36.69 2.43
2868 2891 6.231211 ACCTGAGAATGGTAGTGTTTTACAG 58.769 40.000 0.00 0.00 35.80 2.74
2875 2898 4.980573 TGGTAGTGTTTTACAGCATTCCT 58.019 39.130 0.00 0.00 0.00 3.36
2894 2917 3.071023 TCCTTTGTTGGAGGTAGTGTCTG 59.929 47.826 0.00 0.00 35.71 3.51
2941 2966 5.201243 GGTGAAAACCCAATATCTAGCCTT 58.799 41.667 0.00 0.00 0.00 4.35
2946 2971 4.170468 ACCCAATATCTAGCCTTTGTGG 57.830 45.455 0.00 0.00 39.35 4.17
2957 2982 2.237392 AGCCTTTGTGGGTAGATCTGAC 59.763 50.000 5.18 0.00 46.10 3.51
2960 2985 3.512680 CTTTGTGGGTAGATCTGACGAC 58.487 50.000 5.18 6.12 0.00 4.34
2987 3012 2.029728 CGCCGCAAATAGTTCTCTTCTG 59.970 50.000 0.00 0.00 0.00 3.02
3023 3049 1.040646 AGCACTTTCTCACAGTCCGA 58.959 50.000 0.00 0.00 0.00 4.55
3035 3061 3.559238 ACAGTCCGAATGTGAAAATGC 57.441 42.857 0.00 0.00 0.00 3.56
3036 3062 2.228822 ACAGTCCGAATGTGAAAATGCC 59.771 45.455 0.00 0.00 0.00 4.40
3037 3063 2.228582 CAGTCCGAATGTGAAAATGCCA 59.771 45.455 0.00 0.00 0.00 4.92
3048 4550 6.154203 TGTGAAAATGCCACATTTACAGAA 57.846 33.333 6.01 0.00 39.36 3.02
3099 4601 4.685169 ATGTTATCAGTGGTTTGCTTCG 57.315 40.909 0.00 0.00 0.00 3.79
3100 4602 3.734463 TGTTATCAGTGGTTTGCTTCGA 58.266 40.909 0.00 0.00 0.00 3.71
3101 4603 3.496884 TGTTATCAGTGGTTTGCTTCGAC 59.503 43.478 0.00 0.00 0.00 4.20
3102 4604 1.148310 ATCAGTGGTTTGCTTCGACG 58.852 50.000 0.00 0.00 0.00 5.12
3103 4605 0.103390 TCAGTGGTTTGCTTCGACGA 59.897 50.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.233649 ACACATTGAATAATTTTTCATGGCAAT 57.766 25.926 11.43 0.74 35.64 3.56
5 6 8.618702 ACACATTGAATAATTTTTCATGGCAA 57.381 26.923 11.43 0.00 35.64 4.52
6 7 9.887629 ATACACATTGAATAATTTTTCATGGCA 57.112 25.926 11.43 0.00 35.64 4.92
22 23 9.039870 GGTCAACATTTTTCAAATACACATTGA 57.960 29.630 0.00 0.00 35.11 2.57
23 24 8.824781 TGGTCAACATTTTTCAAATACACATTG 58.175 29.630 0.00 0.00 0.00 2.82
24 25 8.954950 TGGTCAACATTTTTCAAATACACATT 57.045 26.923 0.00 0.00 0.00 2.71
25 26 8.991026 CATGGTCAACATTTTTCAAATACACAT 58.009 29.630 0.00 0.00 37.84 3.21
26 27 7.984050 ACATGGTCAACATTTTTCAAATACACA 59.016 29.630 0.00 0.00 37.84 3.72
27 28 8.364129 ACATGGTCAACATTTTTCAAATACAC 57.636 30.769 0.00 0.00 37.84 2.90
73 74 9.553064 TGCACATTTTTCTTTTAATATGTGGTT 57.447 25.926 16.18 0.00 42.57 3.67
74 75 9.723601 ATGCACATTTTTCTTTTAATATGTGGT 57.276 25.926 16.18 0.00 42.57 4.16
76 77 9.890085 CGATGCACATTTTTCTTTTAATATGTG 57.110 29.630 12.50 12.50 43.87 3.21
77 78 9.638239 ACGATGCACATTTTTCTTTTAATATGT 57.362 25.926 0.00 0.00 32.31 2.29
78 79 9.890085 CACGATGCACATTTTTCTTTTAATATG 57.110 29.630 0.00 0.00 0.00 1.78
79 80 9.638239 ACACGATGCACATTTTTCTTTTAATAT 57.362 25.926 0.00 0.00 0.00 1.28
81 82 7.945033 ACACGATGCACATTTTTCTTTTAAT 57.055 28.000 0.00 0.00 0.00 1.40
82 83 9.469807 AATACACGATGCACATTTTTCTTTTAA 57.530 25.926 0.00 0.00 0.00 1.52
83 84 9.469807 AAATACACGATGCACATTTTTCTTTTA 57.530 25.926 0.00 0.00 0.00 1.52
84 85 7.945033 AATACACGATGCACATTTTTCTTTT 57.055 28.000 0.00 0.00 0.00 2.27
85 86 7.651304 TCAAATACACGATGCACATTTTTCTTT 59.349 29.630 0.00 0.00 0.00 2.52
86 87 7.144661 TCAAATACACGATGCACATTTTTCTT 58.855 30.769 0.00 0.00 0.00 2.52
87 88 6.676950 TCAAATACACGATGCACATTTTTCT 58.323 32.000 0.00 0.00 0.00 2.52
88 89 6.926280 TCAAATACACGATGCACATTTTTC 57.074 33.333 0.00 0.00 0.00 2.29
89 90 7.706281 TTTCAAATACACGATGCACATTTTT 57.294 28.000 0.00 0.00 0.00 1.94
90 91 7.706281 TTTTCAAATACACGATGCACATTTT 57.294 28.000 0.00 0.00 0.00 1.82
91 92 7.706281 TTTTTCAAATACACGATGCACATTT 57.294 28.000 0.00 0.00 0.00 2.32
92 93 7.887996 ATTTTTCAAATACACGATGCACATT 57.112 28.000 0.00 0.00 0.00 2.71
93 94 8.978564 TTATTTTTCAAATACACGATGCACAT 57.021 26.923 0.00 0.00 0.00 3.21
94 95 8.978564 ATTATTTTTCAAATACACGATGCACA 57.021 26.923 0.00 0.00 0.00 4.57
100 101 9.828852 ACGCTTAATTATTTTTCAAATACACGA 57.171 25.926 0.00 0.00 0.00 4.35
101 102 9.865642 CACGCTTAATTATTTTTCAAATACACG 57.134 29.630 0.00 0.00 0.00 4.49
175 176 7.328493 GCGCTTTTAAACACATATCTCCTTTTT 59.672 33.333 0.00 0.00 0.00 1.94
176 177 6.806739 GCGCTTTTAAACACATATCTCCTTTT 59.193 34.615 0.00 0.00 0.00 2.27
177 178 6.072175 TGCGCTTTTAAACACATATCTCCTTT 60.072 34.615 9.73 0.00 0.00 3.11
178 179 5.414454 TGCGCTTTTAAACACATATCTCCTT 59.586 36.000 9.73 0.00 0.00 3.36
179 180 4.941263 TGCGCTTTTAAACACATATCTCCT 59.059 37.500 9.73 0.00 0.00 3.69
180 181 5.229921 TGCGCTTTTAAACACATATCTCC 57.770 39.130 9.73 0.00 0.00 3.71
181 182 6.486248 TCATGCGCTTTTAAACACATATCTC 58.514 36.000 9.73 0.00 0.00 2.75
182 183 6.435430 TCATGCGCTTTTAAACACATATCT 57.565 33.333 9.73 0.00 0.00 1.98
183 184 7.504922 TTTCATGCGCTTTTAAACACATATC 57.495 32.000 9.73 0.00 0.00 1.63
184 185 7.598493 AGTTTTCATGCGCTTTTAAACACATAT 59.402 29.630 21.69 7.37 0.00 1.78
185 186 6.920758 AGTTTTCATGCGCTTTTAAACACATA 59.079 30.769 21.69 0.00 0.00 2.29
186 187 5.752955 AGTTTTCATGCGCTTTTAAACACAT 59.247 32.000 21.69 7.85 0.00 3.21
187 188 5.005203 CAGTTTTCATGCGCTTTTAAACACA 59.995 36.000 21.69 0.00 0.00 3.72
188 189 5.231147 TCAGTTTTCATGCGCTTTTAAACAC 59.769 36.000 21.69 13.44 0.00 3.32
189 190 5.231147 GTCAGTTTTCATGCGCTTTTAAACA 59.769 36.000 21.69 8.32 0.00 2.83
190 191 5.231147 TGTCAGTTTTCATGCGCTTTTAAAC 59.769 36.000 9.73 14.12 0.00 2.01
191 192 5.344066 TGTCAGTTTTCATGCGCTTTTAAA 58.656 33.333 9.73 2.68 0.00 1.52
192 193 4.926244 TGTCAGTTTTCATGCGCTTTTAA 58.074 34.783 9.73 0.00 0.00 1.52
193 194 4.560136 TGTCAGTTTTCATGCGCTTTTA 57.440 36.364 9.73 0.00 0.00 1.52
194 195 3.435105 TGTCAGTTTTCATGCGCTTTT 57.565 38.095 9.73 0.00 0.00 2.27
195 196 3.435105 TTGTCAGTTTTCATGCGCTTT 57.565 38.095 9.73 0.00 0.00 3.51
196 197 3.648339 ATTGTCAGTTTTCATGCGCTT 57.352 38.095 9.73 0.00 0.00 4.68
197 198 4.002982 TCTATTGTCAGTTTTCATGCGCT 58.997 39.130 9.73 0.00 0.00 5.92
198 199 4.340894 TCTATTGTCAGTTTTCATGCGC 57.659 40.909 0.00 0.00 0.00 6.09
199 200 6.142139 TGTTTCTATTGTCAGTTTTCATGCG 58.858 36.000 0.00 0.00 0.00 4.73
200 201 7.928908 TTGTTTCTATTGTCAGTTTTCATGC 57.071 32.000 0.00 0.00 0.00 4.06
209 210 9.626045 GGTTTCCTTTATTGTTTCTATTGTCAG 57.374 33.333 0.00 0.00 0.00 3.51
210 211 9.137459 TGGTTTCCTTTATTGTTTCTATTGTCA 57.863 29.630 0.00 0.00 0.00 3.58
211 212 9.974980 TTGGTTTCCTTTATTGTTTCTATTGTC 57.025 29.630 0.00 0.00 0.00 3.18
217 218 9.952030 TTTTCTTTGGTTTCCTTTATTGTTTCT 57.048 25.926 0.00 0.00 0.00 2.52
241 242 5.452078 TTCTCGGATTTCACTGCATTTTT 57.548 34.783 0.00 0.00 0.00 1.94
242 243 5.452078 TTTCTCGGATTTCACTGCATTTT 57.548 34.783 0.00 0.00 0.00 1.82
243 244 5.649782 ATTTCTCGGATTTCACTGCATTT 57.350 34.783 0.00 0.00 0.00 2.32
244 245 6.150976 TGTTATTTCTCGGATTTCACTGCATT 59.849 34.615 0.00 0.00 0.00 3.56
245 246 5.647658 TGTTATTTCTCGGATTTCACTGCAT 59.352 36.000 0.00 0.00 0.00 3.96
246 247 5.000591 TGTTATTTCTCGGATTTCACTGCA 58.999 37.500 0.00 0.00 0.00 4.41
247 248 5.545658 TGTTATTTCTCGGATTTCACTGC 57.454 39.130 0.00 0.00 0.00 4.40
248 249 7.806690 TCTTTGTTATTTCTCGGATTTCACTG 58.193 34.615 0.00 0.00 0.00 3.66
249 250 7.979444 TCTTTGTTATTTCTCGGATTTCACT 57.021 32.000 0.00 0.00 0.00 3.41
250 251 9.626045 ATTTCTTTGTTATTTCTCGGATTTCAC 57.374 29.630 0.00 0.00 0.00 3.18
251 252 9.840427 GATTTCTTTGTTATTTCTCGGATTTCA 57.160 29.630 0.00 0.00 0.00 2.69
252 253 9.290483 GGATTTCTTTGTTATTTCTCGGATTTC 57.710 33.333 0.00 0.00 0.00 2.17
253 254 8.802267 TGGATTTCTTTGTTATTTCTCGGATTT 58.198 29.630 0.00 0.00 0.00 2.17
254 255 8.348285 TGGATTTCTTTGTTATTTCTCGGATT 57.652 30.769 0.00 0.00 0.00 3.01
255 256 7.611855 ACTGGATTTCTTTGTTATTTCTCGGAT 59.388 33.333 0.00 0.00 0.00 4.18
256 257 6.940298 ACTGGATTTCTTTGTTATTTCTCGGA 59.060 34.615 0.00 0.00 0.00 4.55
257 258 7.023575 CACTGGATTTCTTTGTTATTTCTCGG 58.976 38.462 0.00 0.00 0.00 4.63
258 259 7.806690 TCACTGGATTTCTTTGTTATTTCTCG 58.193 34.615 0.00 0.00 0.00 4.04
259 260 9.965824 TTTCACTGGATTTCTTTGTTATTTCTC 57.034 29.630 0.00 0.00 0.00 2.87
262 263 9.883142 TGTTTTCACTGGATTTCTTTGTTATTT 57.117 25.926 0.00 0.00 0.00 1.40
265 266 9.959749 GTATGTTTTCACTGGATTTCTTTGTTA 57.040 29.630 0.00 0.00 0.00 2.41
266 267 8.474025 TGTATGTTTTCACTGGATTTCTTTGTT 58.526 29.630 0.00 0.00 0.00 2.83
267 268 8.006298 TGTATGTTTTCACTGGATTTCTTTGT 57.994 30.769 0.00 0.00 0.00 2.83
268 269 8.870160 TTGTATGTTTTCACTGGATTTCTTTG 57.130 30.769 0.00 0.00 0.00 2.77
269 270 9.883142 TTTTGTATGTTTTCACTGGATTTCTTT 57.117 25.926 0.00 0.00 0.00 2.52
270 271 9.883142 TTTTTGTATGTTTTCACTGGATTTCTT 57.117 25.926 0.00 0.00 0.00 2.52
271 272 9.533253 CTTTTTGTATGTTTTCACTGGATTTCT 57.467 29.630 0.00 0.00 0.00 2.52
272 273 9.528018 TCTTTTTGTATGTTTTCACTGGATTTC 57.472 29.630 0.00 0.00 0.00 2.17
273 274 9.883142 TTCTTTTTGTATGTTTTCACTGGATTT 57.117 25.926 0.00 0.00 0.00 2.17
274 275 9.883142 TTTCTTTTTGTATGTTTTCACTGGATT 57.117 25.926 0.00 0.00 0.00 3.01
275 276 9.533253 CTTTCTTTTTGTATGTTTTCACTGGAT 57.467 29.630 0.00 0.00 0.00 3.41
276 277 8.744652 TCTTTCTTTTTGTATGTTTTCACTGGA 58.255 29.630 0.00 0.00 0.00 3.86
277 278 8.925161 TCTTTCTTTTTGTATGTTTTCACTGG 57.075 30.769 0.00 0.00 0.00 4.00
294 295 9.140286 GCACTGTTTTTACTCTTTTCTTTCTTT 57.860 29.630 0.00 0.00 0.00 2.52
295 296 8.303876 TGCACTGTTTTTACTCTTTTCTTTCTT 58.696 29.630 0.00 0.00 0.00 2.52
296 297 7.826690 TGCACTGTTTTTACTCTTTTCTTTCT 58.173 30.769 0.00 0.00 0.00 2.52
297 298 8.460831 TTGCACTGTTTTTACTCTTTTCTTTC 57.539 30.769 0.00 0.00 0.00 2.62
298 299 8.708742 GTTTGCACTGTTTTTACTCTTTTCTTT 58.291 29.630 0.00 0.00 0.00 2.52
299 300 7.330946 GGTTTGCACTGTTTTTACTCTTTTCTT 59.669 33.333 0.00 0.00 0.00 2.52
300 301 6.811665 GGTTTGCACTGTTTTTACTCTTTTCT 59.188 34.615 0.00 0.00 0.00 2.52
301 302 6.588373 TGGTTTGCACTGTTTTTACTCTTTTC 59.412 34.615 0.00 0.00 0.00 2.29
302 303 6.459923 TGGTTTGCACTGTTTTTACTCTTTT 58.540 32.000 0.00 0.00 0.00 2.27
303 304 6.031751 TGGTTTGCACTGTTTTTACTCTTT 57.968 33.333 0.00 0.00 0.00 2.52
304 305 5.652994 TGGTTTGCACTGTTTTTACTCTT 57.347 34.783 0.00 0.00 0.00 2.85
305 306 5.652994 TTGGTTTGCACTGTTTTTACTCT 57.347 34.783 0.00 0.00 0.00 3.24
306 307 6.713792 TTTTGGTTTGCACTGTTTTTACTC 57.286 33.333 0.00 0.00 0.00 2.59
327 328 4.932799 CACCGGGTTTCTTTGTTTCTTTTT 59.067 37.500 6.32 0.00 0.00 1.94
328 329 4.221041 TCACCGGGTTTCTTTGTTTCTTTT 59.779 37.500 6.32 0.00 0.00 2.27
329 330 3.764972 TCACCGGGTTTCTTTGTTTCTTT 59.235 39.130 6.32 0.00 0.00 2.52
330 331 3.358118 TCACCGGGTTTCTTTGTTTCTT 58.642 40.909 6.32 0.00 0.00 2.52
331 332 3.007473 TCACCGGGTTTCTTTGTTTCT 57.993 42.857 6.32 0.00 0.00 2.52
332 333 3.786516 TTCACCGGGTTTCTTTGTTTC 57.213 42.857 6.32 0.00 0.00 2.78
333 334 4.538746 TTTTCACCGGGTTTCTTTGTTT 57.461 36.364 6.32 0.00 0.00 2.83
334 335 4.500127 CTTTTTCACCGGGTTTCTTTGTT 58.500 39.130 6.32 0.00 0.00 2.83
335 336 3.677700 GCTTTTTCACCGGGTTTCTTTGT 60.678 43.478 6.32 0.00 0.00 2.83
336 337 2.863740 GCTTTTTCACCGGGTTTCTTTG 59.136 45.455 6.32 0.00 0.00 2.77
337 338 2.498078 TGCTTTTTCACCGGGTTTCTTT 59.502 40.909 6.32 0.00 0.00 2.52
338 339 2.104170 TGCTTTTTCACCGGGTTTCTT 58.896 42.857 6.32 0.00 0.00 2.52
339 340 1.770294 TGCTTTTTCACCGGGTTTCT 58.230 45.000 6.32 0.00 0.00 2.52
340 341 2.588027 TTGCTTTTTCACCGGGTTTC 57.412 45.000 6.32 0.00 0.00 2.78
341 342 2.498078 TCTTTGCTTTTTCACCGGGTTT 59.502 40.909 6.32 0.00 0.00 3.27
342 343 2.104170 TCTTTGCTTTTTCACCGGGTT 58.896 42.857 6.32 0.00 0.00 4.11
343 344 1.770294 TCTTTGCTTTTTCACCGGGT 58.230 45.000 6.32 0.00 0.00 5.28
344 345 2.880963 TTCTTTGCTTTTTCACCGGG 57.119 45.000 6.32 0.00 0.00 5.73
345 346 6.212955 TCTATTTTCTTTGCTTTTTCACCGG 58.787 36.000 0.00 0.00 0.00 5.28
346 347 7.692908 TTCTATTTTCTTTGCTTTTTCACCG 57.307 32.000 0.00 0.00 0.00 4.94
370 371 2.826725 TCGCCCATTTTATCCGGTTTTT 59.173 40.909 0.00 0.00 0.00 1.94
371 372 2.425668 CTCGCCCATTTTATCCGGTTTT 59.574 45.455 0.00 0.00 0.00 2.43
372 373 2.021457 CTCGCCCATTTTATCCGGTTT 58.979 47.619 0.00 0.00 0.00 3.27
373 374 1.675552 CTCGCCCATTTTATCCGGTT 58.324 50.000 0.00 0.00 0.00 4.44
374 375 0.818040 GCTCGCCCATTTTATCCGGT 60.818 55.000 0.00 0.00 0.00 5.28
375 376 0.817634 TGCTCGCCCATTTTATCCGG 60.818 55.000 0.00 0.00 0.00 5.14
376 377 1.021202 TTGCTCGCCCATTTTATCCG 58.979 50.000 0.00 0.00 0.00 4.18
377 378 2.165437 TGTTTGCTCGCCCATTTTATCC 59.835 45.455 0.00 0.00 0.00 2.59
378 379 3.502191 TGTTTGCTCGCCCATTTTATC 57.498 42.857 0.00 0.00 0.00 1.75
379 380 3.951775 TTGTTTGCTCGCCCATTTTAT 57.048 38.095 0.00 0.00 0.00 1.40
380 381 3.319405 TCTTTGTTTGCTCGCCCATTTTA 59.681 39.130 0.00 0.00 0.00 1.52
381 382 2.102252 TCTTTGTTTGCTCGCCCATTTT 59.898 40.909 0.00 0.00 0.00 1.82
382 383 1.686052 TCTTTGTTTGCTCGCCCATTT 59.314 42.857 0.00 0.00 0.00 2.32
383 384 1.327303 TCTTTGTTTGCTCGCCCATT 58.673 45.000 0.00 0.00 0.00 3.16
384 385 1.327303 TTCTTTGTTTGCTCGCCCAT 58.673 45.000 0.00 0.00 0.00 4.00
385 386 1.107114 TTTCTTTGTTTGCTCGCCCA 58.893 45.000 0.00 0.00 0.00 5.36
386 387 2.217429 TTTTCTTTGTTTGCTCGCCC 57.783 45.000 0.00 0.00 0.00 6.13
387 388 5.219633 TCTATTTTTCTTTGTTTGCTCGCC 58.780 37.500 0.00 0.00 0.00 5.54
388 389 6.747659 TTCTATTTTTCTTTGTTTGCTCGC 57.252 33.333 0.00 0.00 0.00 5.03
389 390 8.560576 TCTTTCTATTTTTCTTTGTTTGCTCG 57.439 30.769 0.00 0.00 0.00 5.03
392 393 9.425893 GCTTTCTTTCTATTTTTCTTTGTTTGC 57.574 29.630 0.00 0.00 0.00 3.68
420 421 4.390603 GGCACGGTTTTTCTGTTTCTTTTT 59.609 37.500 0.00 0.00 32.67 1.94
421 422 3.930229 GGCACGGTTTTTCTGTTTCTTTT 59.070 39.130 0.00 0.00 32.67 2.27
422 423 3.056465 TGGCACGGTTTTTCTGTTTCTTT 60.056 39.130 0.00 0.00 32.67 2.52
423 424 2.494073 TGGCACGGTTTTTCTGTTTCTT 59.506 40.909 0.00 0.00 32.67 2.52
424 425 2.096248 TGGCACGGTTTTTCTGTTTCT 58.904 42.857 0.00 0.00 32.67 2.52
425 426 2.570442 TGGCACGGTTTTTCTGTTTC 57.430 45.000 0.00 0.00 32.67 2.78
426 427 3.320673 TTTGGCACGGTTTTTCTGTTT 57.679 38.095 0.00 0.00 32.67 2.83
427 428 2.997303 GTTTTGGCACGGTTTTTCTGTT 59.003 40.909 0.00 0.00 32.67 3.16
428 429 2.612604 GTTTTGGCACGGTTTTTCTGT 58.387 42.857 0.00 0.00 35.83 3.41
429 430 1.930503 GGTTTTGGCACGGTTTTTCTG 59.069 47.619 0.00 0.00 0.00 3.02
430 431 1.550976 TGGTTTTGGCACGGTTTTTCT 59.449 42.857 0.00 0.00 0.00 2.52
431 432 1.930503 CTGGTTTTGGCACGGTTTTTC 59.069 47.619 0.00 0.00 0.00 2.29
432 433 1.550976 TCTGGTTTTGGCACGGTTTTT 59.449 42.857 0.00 0.00 0.00 1.94
433 434 1.134936 GTCTGGTTTTGGCACGGTTTT 60.135 47.619 0.00 0.00 0.00 2.43
434 435 0.458260 GTCTGGTTTTGGCACGGTTT 59.542 50.000 0.00 0.00 0.00 3.27
435 436 0.395173 AGTCTGGTTTTGGCACGGTT 60.395 50.000 0.00 0.00 0.00 4.44
436 437 1.101049 CAGTCTGGTTTTGGCACGGT 61.101 55.000 0.00 0.00 0.00 4.83
437 438 0.817634 TCAGTCTGGTTTTGGCACGG 60.818 55.000 0.00 0.00 0.00 4.94
438 439 1.021202 TTCAGTCTGGTTTTGGCACG 58.979 50.000 0.00 0.00 0.00 5.34
439 440 1.748493 TGTTCAGTCTGGTTTTGGCAC 59.252 47.619 0.00 0.00 0.00 5.01
440 441 2.136298 TGTTCAGTCTGGTTTTGGCA 57.864 45.000 0.00 0.00 0.00 4.92
441 442 3.518634 TTTGTTCAGTCTGGTTTTGGC 57.481 42.857 0.00 0.00 0.00 4.52
442 443 5.072040 ACTTTTGTTCAGTCTGGTTTTGG 57.928 39.130 0.00 0.00 0.00 3.28
443 444 6.616947 TGTACTTTTGTTCAGTCTGGTTTTG 58.383 36.000 0.00 0.00 0.00 2.44
444 445 6.827586 TGTACTTTTGTTCAGTCTGGTTTT 57.172 33.333 0.00 0.00 0.00 2.43
445 446 6.433093 ACTTGTACTTTTGTTCAGTCTGGTTT 59.567 34.615 0.00 0.00 31.53 3.27
446 447 5.944007 ACTTGTACTTTTGTTCAGTCTGGTT 59.056 36.000 0.00 0.00 31.53 3.67
447 448 5.354234 CACTTGTACTTTTGTTCAGTCTGGT 59.646 40.000 0.00 0.00 31.53 4.00
448 449 5.354234 ACACTTGTACTTTTGTTCAGTCTGG 59.646 40.000 0.00 0.00 31.53 3.86
449 450 6.422776 ACACTTGTACTTTTGTTCAGTCTG 57.577 37.500 0.00 0.00 31.53 3.51
450 451 5.585047 GGACACTTGTACTTTTGTTCAGTCT 59.415 40.000 0.00 0.00 31.53 3.24
451 452 5.220796 GGGACACTTGTACTTTTGTTCAGTC 60.221 44.000 0.00 0.00 31.53 3.51
452 453 4.638865 GGGACACTTGTACTTTTGTTCAGT 59.361 41.667 0.00 0.00 31.53 3.41
453 454 4.036380 GGGGACACTTGTACTTTTGTTCAG 59.964 45.833 0.00 0.00 31.53 3.02
454 455 3.949113 GGGGACACTTGTACTTTTGTTCA 59.051 43.478 0.00 0.00 0.00 3.18
455 456 3.949113 TGGGGACACTTGTACTTTTGTTC 59.051 43.478 0.00 0.00 33.40 3.18
456 457 3.970842 TGGGGACACTTGTACTTTTGTT 58.029 40.909 0.00 0.00 33.40 2.83
457 458 3.655615 TGGGGACACTTGTACTTTTGT 57.344 42.857 0.00 0.00 33.40 2.83
471 472 0.601057 CGTTGGGTTTTGATGGGGAC 59.399 55.000 0.00 0.00 0.00 4.46
472 473 0.478942 TCGTTGGGTTTTGATGGGGA 59.521 50.000 0.00 0.00 0.00 4.81
473 474 1.333177 TTCGTTGGGTTTTGATGGGG 58.667 50.000 0.00 0.00 0.00 4.96
474 475 2.930455 GCATTCGTTGGGTTTTGATGGG 60.930 50.000 0.00 0.00 0.00 4.00
475 476 2.288702 TGCATTCGTTGGGTTTTGATGG 60.289 45.455 0.00 0.00 0.00 3.51
476 477 3.023946 TGCATTCGTTGGGTTTTGATG 57.976 42.857 0.00 0.00 0.00 3.07
477 478 3.742433 TTGCATTCGTTGGGTTTTGAT 57.258 38.095 0.00 0.00 0.00 2.57
478 479 3.526931 TTTGCATTCGTTGGGTTTTGA 57.473 38.095 0.00 0.00 0.00 2.69
479 480 4.331168 TCTTTTTGCATTCGTTGGGTTTTG 59.669 37.500 0.00 0.00 0.00 2.44
480 481 4.331443 GTCTTTTTGCATTCGTTGGGTTTT 59.669 37.500 0.00 0.00 0.00 2.43
481 482 3.868661 GTCTTTTTGCATTCGTTGGGTTT 59.131 39.130 0.00 0.00 0.00 3.27
482 483 3.453424 GTCTTTTTGCATTCGTTGGGTT 58.547 40.909 0.00 0.00 0.00 4.11
483 484 2.542824 CGTCTTTTTGCATTCGTTGGGT 60.543 45.455 0.00 0.00 0.00 4.51
484 485 2.050691 CGTCTTTTTGCATTCGTTGGG 58.949 47.619 0.00 0.00 0.00 4.12
485 486 2.726633 ACGTCTTTTTGCATTCGTTGG 58.273 42.857 0.00 0.00 0.00 3.77
486 487 4.731000 TGTAACGTCTTTTTGCATTCGTTG 59.269 37.500 15.52 0.00 40.67 4.10
487 488 4.911053 TGTAACGTCTTTTTGCATTCGTT 58.089 34.783 0.00 0.00 42.51 3.85
488 489 4.271533 TCTGTAACGTCTTTTTGCATTCGT 59.728 37.500 0.00 0.00 0.00 3.85
489 490 4.607235 GTCTGTAACGTCTTTTTGCATTCG 59.393 41.667 0.00 0.00 0.00 3.34
490 491 5.395486 GTGTCTGTAACGTCTTTTTGCATTC 59.605 40.000 0.00 0.00 0.00 2.67
491 492 5.163703 TGTGTCTGTAACGTCTTTTTGCATT 60.164 36.000 0.00 0.00 0.00 3.56
492 493 4.334203 TGTGTCTGTAACGTCTTTTTGCAT 59.666 37.500 0.00 0.00 0.00 3.96
493 494 3.685272 TGTGTCTGTAACGTCTTTTTGCA 59.315 39.130 0.00 0.00 0.00 4.08
494 495 4.267357 TGTGTCTGTAACGTCTTTTTGC 57.733 40.909 0.00 0.00 0.00 3.68
495 496 4.331717 ACCTGTGTCTGTAACGTCTTTTTG 59.668 41.667 0.00 0.00 0.00 2.44
496 497 4.331717 CACCTGTGTCTGTAACGTCTTTTT 59.668 41.667 0.00 0.00 0.00 1.94
497 498 3.869246 CACCTGTGTCTGTAACGTCTTTT 59.131 43.478 0.00 0.00 0.00 2.27
498 499 3.454375 CACCTGTGTCTGTAACGTCTTT 58.546 45.455 0.00 0.00 0.00 2.52
499 500 2.802057 GCACCTGTGTCTGTAACGTCTT 60.802 50.000 0.00 0.00 0.00 3.01
500 501 1.269621 GCACCTGTGTCTGTAACGTCT 60.270 52.381 0.00 0.00 0.00 4.18
501 502 1.137513 GCACCTGTGTCTGTAACGTC 58.862 55.000 0.00 0.00 0.00 4.34
502 503 0.462375 TGCACCTGTGTCTGTAACGT 59.538 50.000 0.00 0.00 0.00 3.99
503 504 0.859232 GTGCACCTGTGTCTGTAACG 59.141 55.000 5.22 0.00 0.00 3.18
504 505 1.948104 TGTGCACCTGTGTCTGTAAC 58.052 50.000 15.69 0.00 0.00 2.50
505 506 2.928801 ATGTGCACCTGTGTCTGTAA 57.071 45.000 15.69 0.00 0.00 2.41
506 507 5.869649 ATATATGTGCACCTGTGTCTGTA 57.130 39.130 15.69 0.00 0.00 2.74
507 508 4.760530 ATATATGTGCACCTGTGTCTGT 57.239 40.909 15.69 0.00 0.00 3.41
508 509 4.681483 CGTATATATGTGCACCTGTGTCTG 59.319 45.833 15.69 0.00 0.00 3.51
509 510 4.796290 GCGTATATATGTGCACCTGTGTCT 60.796 45.833 15.69 0.00 0.00 3.41
510 511 3.428870 GCGTATATATGTGCACCTGTGTC 59.571 47.826 15.69 0.00 0.00 3.67
511 512 3.390135 GCGTATATATGTGCACCTGTGT 58.610 45.455 15.69 3.76 0.00 3.72
512 513 2.408368 CGCGTATATATGTGCACCTGTG 59.592 50.000 15.69 0.00 0.00 3.66
513 514 2.035449 ACGCGTATATATGTGCACCTGT 59.965 45.455 11.67 5.40 0.00 4.00
514 515 2.672714 ACGCGTATATATGTGCACCTG 58.327 47.619 11.67 0.00 0.00 4.00
515 516 4.713824 ATACGCGTATATATGTGCACCT 57.286 40.909 29.34 7.20 0.00 4.00
516 517 5.228635 GTGTATACGCGTATATATGTGCACC 59.771 44.000 34.30 21.21 31.45 5.01
517 518 6.025896 AGTGTATACGCGTATATATGTGCAC 58.974 40.000 34.30 31.46 31.45 4.57
518 519 6.128227 TGAGTGTATACGCGTATATATGTGCA 60.128 38.462 34.30 24.87 31.45 4.57
519 520 6.253013 TGAGTGTATACGCGTATATATGTGC 58.747 40.000 34.30 22.98 31.45 4.57
520 521 8.336080 AGATGAGTGTATACGCGTATATATGTG 58.664 37.037 34.30 12.93 31.45 3.21
521 522 8.434733 AGATGAGTGTATACGCGTATATATGT 57.565 34.615 34.30 24.34 31.45 2.29
522 523 8.766151 AGAGATGAGTGTATACGCGTATATATG 58.234 37.037 34.30 0.00 31.45 1.78
523 524 8.890124 AGAGATGAGTGTATACGCGTATATAT 57.110 34.615 34.30 24.57 31.45 0.86
524 525 9.978044 ATAGAGATGAGTGTATACGCGTATATA 57.022 33.333 34.30 30.08 31.45 0.86
525 526 8.890124 ATAGAGATGAGTGTATACGCGTATAT 57.110 34.615 34.30 22.57 31.45 0.86
526 527 9.807649 TTATAGAGATGAGTGTATACGCGTATA 57.192 33.333 30.02 30.02 0.00 1.47
527 528 8.713737 TTATAGAGATGAGTGTATACGCGTAT 57.286 34.615 32.13 32.13 0.00 3.06
528 529 8.438513 GTTTATAGAGATGAGTGTATACGCGTA 58.561 37.037 22.94 22.94 0.00 4.42
529 530 7.041576 TGTTTATAGAGATGAGTGTATACGCGT 60.042 37.037 19.17 19.17 0.00 6.01
530 531 7.268659 GTGTTTATAGAGATGAGTGTATACGCG 59.731 40.741 3.53 3.53 0.00 6.01
531 532 7.268659 CGTGTTTATAGAGATGAGTGTATACGC 59.731 40.741 8.42 8.42 0.00 4.42
532 533 7.268659 GCGTGTTTATAGAGATGAGTGTATACG 59.731 40.741 0.00 0.00 0.00 3.06
533 534 7.268659 CGCGTGTTTATAGAGATGAGTGTATAC 59.731 40.741 0.00 0.00 0.00 1.47
534 535 7.295930 CGCGTGTTTATAGAGATGAGTGTATA 58.704 38.462 0.00 0.00 0.00 1.47
535 536 6.143496 CGCGTGTTTATAGAGATGAGTGTAT 58.857 40.000 0.00 0.00 0.00 2.29
536 537 5.507974 CGCGTGTTTATAGAGATGAGTGTA 58.492 41.667 0.00 0.00 0.00 2.90
537 538 4.352039 CGCGTGTTTATAGAGATGAGTGT 58.648 43.478 0.00 0.00 0.00 3.55
538 539 3.180584 GCGCGTGTTTATAGAGATGAGTG 59.819 47.826 8.43 0.00 0.00 3.51
539 540 3.372954 GCGCGTGTTTATAGAGATGAGT 58.627 45.455 8.43 0.00 0.00 3.41
540 541 2.402049 CGCGCGTGTTTATAGAGATGAG 59.598 50.000 24.19 0.00 0.00 2.90
541 542 2.381589 CGCGCGTGTTTATAGAGATGA 58.618 47.619 24.19 0.00 0.00 2.92
542 543 1.136884 GCGCGCGTGTTTATAGAGATG 60.137 52.381 32.35 0.00 0.00 2.90
543 544 1.129326 GCGCGCGTGTTTATAGAGAT 58.871 50.000 32.35 0.00 0.00 2.75
544 545 0.179158 TGCGCGCGTGTTTATAGAGA 60.179 50.000 32.35 0.00 0.00 3.10
545 546 0.044161 GTGCGCGCGTGTTTATAGAG 60.044 55.000 32.35 0.00 0.00 2.43
546 547 0.733223 TGTGCGCGCGTGTTTATAGA 60.733 50.000 32.35 0.75 0.00 1.98
547 548 0.583083 GTGTGCGCGCGTGTTTATAG 60.583 55.000 32.35 0.00 0.00 1.31
548 549 1.282930 TGTGTGCGCGCGTGTTTATA 61.283 50.000 32.35 9.37 0.00 0.98
549 550 2.172419 GTGTGCGCGCGTGTTTAT 59.828 55.556 32.35 0.00 0.00 1.40
550 551 3.262686 TGTGTGCGCGCGTGTTTA 61.263 55.556 32.35 12.81 0.00 2.01
551 552 4.879686 GTGTGTGCGCGCGTGTTT 62.880 61.111 32.35 0.00 0.00 2.83
557 558 3.118454 ATAGGTGTGTGTGCGCGC 61.118 61.111 27.26 27.26 35.09 6.86
558 559 1.686566 CTCATAGGTGTGTGTGCGCG 61.687 60.000 0.00 0.00 0.00 6.86
559 560 1.970917 GCTCATAGGTGTGTGTGCGC 61.971 60.000 0.00 0.00 0.00 6.09
560 561 0.670239 TGCTCATAGGTGTGTGTGCG 60.670 55.000 0.00 0.00 37.17 5.34
561 562 0.798776 GTGCTCATAGGTGTGTGTGC 59.201 55.000 0.00 0.00 35.51 4.57
562 563 1.002430 AGGTGCTCATAGGTGTGTGTG 59.998 52.381 0.00 0.00 0.00 3.82
563 564 1.352083 AGGTGCTCATAGGTGTGTGT 58.648 50.000 0.00 0.00 0.00 3.72
564 565 2.350522 GAAGGTGCTCATAGGTGTGTG 58.649 52.381 0.00 0.00 0.00 3.82
565 566 1.066858 CGAAGGTGCTCATAGGTGTGT 60.067 52.381 0.00 0.00 0.00 3.72
566 567 1.204704 TCGAAGGTGCTCATAGGTGTG 59.795 52.381 0.00 0.00 0.00 3.82
567 568 1.478510 CTCGAAGGTGCTCATAGGTGT 59.521 52.381 0.00 0.00 0.00 4.16
568 569 1.751351 TCTCGAAGGTGCTCATAGGTG 59.249 52.381 0.00 0.00 0.00 4.00
569 570 2.028130 CTCTCGAAGGTGCTCATAGGT 58.972 52.381 0.00 0.00 0.00 3.08
570 571 2.034053 GTCTCTCGAAGGTGCTCATAGG 59.966 54.545 0.00 0.00 0.00 2.57
571 572 2.034053 GGTCTCTCGAAGGTGCTCATAG 59.966 54.545 0.00 0.00 0.00 2.23
572 573 2.025155 GGTCTCTCGAAGGTGCTCATA 58.975 52.381 0.00 0.00 0.00 2.15
573 574 0.820871 GGTCTCTCGAAGGTGCTCAT 59.179 55.000 0.00 0.00 0.00 2.90
574 575 1.587043 CGGTCTCTCGAAGGTGCTCA 61.587 60.000 0.00 0.00 0.00 4.26
575 576 1.137825 CGGTCTCTCGAAGGTGCTC 59.862 63.158 0.00 0.00 0.00 4.26
576 577 1.179814 AACGGTCTCTCGAAGGTGCT 61.180 55.000 0.00 0.00 0.00 4.40
577 578 1.009389 CAACGGTCTCTCGAAGGTGC 61.009 60.000 0.00 0.00 0.00 5.01
578 579 0.596577 TCAACGGTCTCTCGAAGGTG 59.403 55.000 0.00 0.00 0.00 4.00
579 580 1.325355 TTCAACGGTCTCTCGAAGGT 58.675 50.000 0.00 0.00 0.00 3.50
580 581 2.433868 TTTCAACGGTCTCTCGAAGG 57.566 50.000 0.00 0.00 0.00 3.46
581 582 3.368236 GGATTTTCAACGGTCTCTCGAAG 59.632 47.826 0.00 0.00 0.00 3.79
582 583 3.006537 AGGATTTTCAACGGTCTCTCGAA 59.993 43.478 0.00 0.00 0.00 3.71
583 584 2.561419 AGGATTTTCAACGGTCTCTCGA 59.439 45.455 0.00 0.00 0.00 4.04
584 585 2.668457 CAGGATTTTCAACGGTCTCTCG 59.332 50.000 0.00 0.00 0.00 4.04
585 586 3.926616 TCAGGATTTTCAACGGTCTCTC 58.073 45.455 0.00 0.00 0.00 3.20
586 587 4.351874 TTCAGGATTTTCAACGGTCTCT 57.648 40.909 0.00 0.00 0.00 3.10
587 588 5.629079 ATTTCAGGATTTTCAACGGTCTC 57.371 39.130 0.00 0.00 0.00 3.36
588 589 7.519032 TTTATTTCAGGATTTTCAACGGTCT 57.481 32.000 0.00 0.00 0.00 3.85
589 590 7.488150 GGATTTATTTCAGGATTTTCAACGGTC 59.512 37.037 0.00 0.00 0.00 4.79
590 591 7.039363 TGGATTTATTTCAGGATTTTCAACGGT 60.039 33.333 0.00 0.00 0.00 4.83
591 592 7.319646 TGGATTTATTTCAGGATTTTCAACGG 58.680 34.615 0.00 0.00 0.00 4.44
592 593 8.243426 TCTGGATTTATTTCAGGATTTTCAACG 58.757 33.333 0.00 0.00 0.00 4.10
593 594 9.578439 CTCTGGATTTATTTCAGGATTTTCAAC 57.422 33.333 0.00 0.00 0.00 3.18
594 595 9.312904 ACTCTGGATTTATTTCAGGATTTTCAA 57.687 29.630 0.00 0.00 0.00 2.69
595 596 8.884124 ACTCTGGATTTATTTCAGGATTTTCA 57.116 30.769 0.00 0.00 0.00 2.69
600 601 8.854117 GCATTTACTCTGGATTTATTTCAGGAT 58.146 33.333 0.00 0.00 0.00 3.24
601 602 7.012327 CGCATTTACTCTGGATTTATTTCAGGA 59.988 37.037 0.00 0.00 0.00 3.86
602 603 7.012327 TCGCATTTACTCTGGATTTATTTCAGG 59.988 37.037 0.00 0.00 0.00 3.86
603 604 7.919690 TCGCATTTACTCTGGATTTATTTCAG 58.080 34.615 0.00 0.00 0.00 3.02
604 605 7.467267 GCTCGCATTTACTCTGGATTTATTTCA 60.467 37.037 0.00 0.00 0.00 2.69
605 606 6.853362 GCTCGCATTTACTCTGGATTTATTTC 59.147 38.462 0.00 0.00 0.00 2.17
606 607 6.318648 TGCTCGCATTTACTCTGGATTTATTT 59.681 34.615 0.00 0.00 0.00 1.40
607 608 5.822519 TGCTCGCATTTACTCTGGATTTATT 59.177 36.000 0.00 0.00 0.00 1.40
608 609 5.368145 TGCTCGCATTTACTCTGGATTTAT 58.632 37.500 0.00 0.00 0.00 1.40
609 610 4.765273 TGCTCGCATTTACTCTGGATTTA 58.235 39.130 0.00 0.00 0.00 1.40
610 611 3.609853 TGCTCGCATTTACTCTGGATTT 58.390 40.909 0.00 0.00 0.00 2.17
611 612 3.266510 TGCTCGCATTTACTCTGGATT 57.733 42.857 0.00 0.00 0.00 3.01
612 613 2.988010 TGCTCGCATTTACTCTGGAT 57.012 45.000 0.00 0.00 0.00 3.41
613 614 2.760634 TTGCTCGCATTTACTCTGGA 57.239 45.000 0.00 0.00 0.00 3.86
614 615 3.496130 CCTATTGCTCGCATTTACTCTGG 59.504 47.826 0.00 0.00 0.00 3.86
615 616 4.210120 GTCCTATTGCTCGCATTTACTCTG 59.790 45.833 0.00 0.00 0.00 3.35
616 617 4.100189 AGTCCTATTGCTCGCATTTACTCT 59.900 41.667 0.00 0.00 0.00 3.24
617 618 4.372656 AGTCCTATTGCTCGCATTTACTC 58.627 43.478 0.00 0.00 0.00 2.59
618 619 4.100189 AGAGTCCTATTGCTCGCATTTACT 59.900 41.667 0.00 0.00 36.88 2.24
619 620 4.372656 AGAGTCCTATTGCTCGCATTTAC 58.627 43.478 0.00 0.00 36.88 2.01
620 621 4.672587 AGAGTCCTATTGCTCGCATTTA 57.327 40.909 0.00 0.00 36.88 1.40
621 622 3.550437 AGAGTCCTATTGCTCGCATTT 57.450 42.857 0.00 0.00 36.88 2.32
622 623 3.550437 AAGAGTCCTATTGCTCGCATT 57.450 42.857 0.00 0.00 36.88 3.56
623 624 3.891977 TCTAAGAGTCCTATTGCTCGCAT 59.108 43.478 0.00 0.00 36.88 4.73
624 625 3.288092 TCTAAGAGTCCTATTGCTCGCA 58.712 45.455 0.00 0.00 36.88 5.10
625 626 3.992260 TCTAAGAGTCCTATTGCTCGC 57.008 47.619 0.00 0.00 36.88 5.03
626 627 6.256757 CCTTTTTCTAAGAGTCCTATTGCTCG 59.743 42.308 0.00 0.00 36.88 5.03
627 628 7.106890 ACCTTTTTCTAAGAGTCCTATTGCTC 58.893 38.462 0.00 0.00 0.00 4.26
628 629 7.021998 ACCTTTTTCTAAGAGTCCTATTGCT 57.978 36.000 0.00 0.00 0.00 3.91
629 630 8.041919 ACTACCTTTTTCTAAGAGTCCTATTGC 58.958 37.037 0.00 0.00 0.00 3.56
632 633 8.901793 CGTACTACCTTTTTCTAAGAGTCCTAT 58.098 37.037 0.00 0.00 0.00 2.57
633 634 8.103305 TCGTACTACCTTTTTCTAAGAGTCCTA 58.897 37.037 0.00 0.00 0.00 2.94
634 635 6.944862 TCGTACTACCTTTTTCTAAGAGTCCT 59.055 38.462 0.00 0.00 0.00 3.85
635 636 7.150783 TCGTACTACCTTTTTCTAAGAGTCC 57.849 40.000 0.00 0.00 0.00 3.85
636 637 7.249858 CCTCGTACTACCTTTTTCTAAGAGTC 58.750 42.308 0.00 0.00 0.00 3.36
637 638 6.350027 GCCTCGTACTACCTTTTTCTAAGAGT 60.350 42.308 0.00 0.00 0.00 3.24
638 639 6.035217 GCCTCGTACTACCTTTTTCTAAGAG 58.965 44.000 0.00 0.00 0.00 2.85
639 640 5.477984 TGCCTCGTACTACCTTTTTCTAAGA 59.522 40.000 0.00 0.00 0.00 2.10
640 641 5.717119 TGCCTCGTACTACCTTTTTCTAAG 58.283 41.667 0.00 0.00 0.00 2.18
641 642 5.244626 ACTGCCTCGTACTACCTTTTTCTAA 59.755 40.000 0.00 0.00 0.00 2.10
685 686 4.028852 TCACGTTGATTATCCTGACTCG 57.971 45.455 0.00 0.00 0.00 4.18
689 691 4.202253 CCCTCATCACGTTGATTATCCTGA 60.202 45.833 0.00 0.00 34.28 3.86
773 776 0.037790 GCTCAGACTTCGTCCAAGCT 60.038 55.000 9.60 0.00 37.51 3.74
870 873 6.403878 GGCGATAGGTAAAATAGCTATGGAA 58.596 40.000 7.09 0.00 46.26 3.53
897 900 0.249238 CCAATCGCTTCCTCTCCGAG 60.249 60.000 0.00 0.00 34.21 4.63
1031 1034 4.424430 CCGTCTTTTCGCACGCCG 62.424 66.667 0.00 0.00 34.58 6.46
1032 1035 3.291167 GACCGTCTTTTCGCACGCC 62.291 63.158 0.00 0.00 34.58 5.68
1227 1241 4.767409 AGGCTGTTATACATGCTCGATCTA 59.233 41.667 0.00 0.00 0.00 1.98
1382 1396 6.483974 TGTACGTTGTGAATTGTTCATTACCT 59.516 34.615 0.00 0.00 42.47 3.08
1390 1404 8.952278 ACCATAATATGTACGTTGTGAATTGTT 58.048 29.630 0.00 0.00 0.00 2.83
1430 1444 8.744652 ACAACACAGCTCTCAGGATATATATAC 58.255 37.037 0.00 0.00 0.00 1.47
1431 1445 8.743714 CACAACACAGCTCTCAGGATATATATA 58.256 37.037 0.00 0.00 0.00 0.86
1448 1462 2.328989 CTGCGCCACACAACACAG 59.671 61.111 4.18 0.00 0.00 3.66
1450 1464 1.440938 TTACCTGCGCCACACAACAC 61.441 55.000 4.18 0.00 0.00 3.32
1460 1474 1.432270 GCCAGATCTGTTACCTGCGC 61.432 60.000 21.11 10.80 0.00 6.09
1472 1486 3.063180 CAGTTCATTCTTGTCGCCAGATC 59.937 47.826 0.00 0.00 0.00 2.75
1504 1518 1.776710 TAGGTTTGTGGGGCTGGGT 60.777 57.895 0.00 0.00 0.00 4.51
1524 1538 0.102481 GCTTGGCTCATGCATGAAGG 59.898 55.000 28.39 19.25 41.91 3.46
1551 1565 3.562557 ACGAAAGAAAAGGAGCGCTAAAA 59.437 39.130 11.50 0.00 0.00 1.52
1559 1573 4.853743 GCTTGCATTACGAAAGAAAAGGAG 59.146 41.667 0.00 0.00 0.00 3.69
1658 1674 0.902984 TACCGGAGAAGGCAGCTGAA 60.903 55.000 20.43 0.00 33.69 3.02
1661 1677 1.305381 AGTACCGGAGAAGGCAGCT 60.305 57.895 9.46 0.00 33.69 4.24
1789 1805 5.475909 AGTTGAGCAGTGTGATTGATTTGAT 59.524 36.000 0.00 0.00 0.00 2.57
1815 1833 4.614946 TCTGAATAGCACGATCAGTCATG 58.385 43.478 0.00 0.00 41.04 3.07
2138 2159 0.111061 TGAATTCCAGGCTGTGCTGT 59.889 50.000 14.43 0.00 0.00 4.40
2175 2196 3.369366 GGTTGGGGCATAAAGAACCAATG 60.369 47.826 0.00 0.00 42.52 2.82
2213 2234 1.065854 CCAAGCTCAGAGGAACCGAAT 60.066 52.381 0.00 0.00 0.00 3.34
2369 2392 5.471456 CCATCAGAGACCAGGCATTATTTAC 59.529 44.000 0.00 0.00 0.00 2.01
2446 2469 8.993121 TGTTGAAATTAACAAACACAAACACAT 58.007 25.926 0.00 0.00 37.60 3.21
2448 2471 7.954786 CCTGTTGAAATTAACAAACACAAACAC 59.045 33.333 0.00 0.00 39.81 3.32
2454 2477 5.751509 GGGTCCTGTTGAAATTAACAAACAC 59.248 40.000 0.00 0.00 39.81 3.32
2460 2483 6.713450 TCAGTAAGGGTCCTGTTGAAATTAAC 59.287 38.462 0.00 0.00 0.00 2.01
2470 2493 5.778542 AGTATATGTCAGTAAGGGTCCTGT 58.221 41.667 0.00 0.00 0.00 4.00
2498 2521 5.296780 ACGGTGATTGATATGGTTCATCAAC 59.703 40.000 0.17 0.00 43.27 3.18
2500 2523 5.034852 ACGGTGATTGATATGGTTCATCA 57.965 39.130 0.00 0.00 0.00 3.07
2549 2572 6.487299 AAAAGAGTAAGAGACCACTGAAGT 57.513 37.500 0.00 0.00 0.00 3.01
2571 2594 0.103937 CCCACTGCTTTCGCCAAAAA 59.896 50.000 0.00 0.00 34.43 1.94
2572 2595 1.739049 CCCACTGCTTTCGCCAAAA 59.261 52.632 0.00 0.00 34.43 2.44
2573 2596 2.855514 GCCCACTGCTTTCGCCAAA 61.856 57.895 0.00 0.00 36.87 3.28
2574 2597 3.294493 GCCCACTGCTTTCGCCAA 61.294 61.111 0.00 0.00 36.87 4.52
2585 2608 2.281761 CGCAAGGAACAGCCCACT 60.282 61.111 0.00 0.00 37.37 4.00
2586 2609 2.594592 ACGCAAGGAACAGCCCAC 60.595 61.111 0.00 0.00 46.39 4.61
2587 2610 2.281484 GACGCAAGGAACAGCCCA 60.281 61.111 0.00 0.00 46.39 5.36
2588 2611 3.423154 CGACGCAAGGAACAGCCC 61.423 66.667 0.00 0.00 46.39 5.19
2589 2612 1.741770 ATCGACGCAAGGAACAGCC 60.742 57.895 0.00 0.00 46.39 4.85
2590 2613 1.014044 TCATCGACGCAAGGAACAGC 61.014 55.000 0.00 0.00 46.39 4.40
2591 2614 0.716108 GTCATCGACGCAAGGAACAG 59.284 55.000 0.00 0.00 46.39 3.16
2592 2615 0.669318 GGTCATCGACGCAAGGAACA 60.669 55.000 0.00 0.00 46.39 3.18
2593 2616 0.389948 AGGTCATCGACGCAAGGAAC 60.390 55.000 0.00 0.00 46.39 3.62
2594 2617 0.108804 GAGGTCATCGACGCAAGGAA 60.109 55.000 0.00 0.00 46.39 3.36
2595 2618 1.511305 GAGGTCATCGACGCAAGGA 59.489 57.895 0.00 0.00 46.39 3.36
2596 2619 4.094684 GAGGTCATCGACGCAAGG 57.905 61.111 0.00 0.00 46.39 3.61
2624 2647 2.514824 GGATCAGGGCTTGTCCGC 60.515 66.667 0.00 0.00 34.94 5.54
2691 2714 1.891919 GCCTTGACGGTTGTGCAGA 60.892 57.895 0.00 0.00 34.25 4.26
2695 2718 1.227999 ATCACGCCTTGACGGTTGTG 61.228 55.000 0.00 0.00 40.47 3.33
2709 2732 5.284897 CGCTATTGTAAGCTAGATCATCACG 59.715 44.000 0.00 0.00 40.49 4.35
2720 2743 3.190874 GCAGAAGTCGCTATTGTAAGCT 58.809 45.455 0.00 0.00 40.49 3.74
2737 2760 1.901159 CACCCCCATTTTGAATGCAGA 59.099 47.619 0.00 0.00 0.00 4.26
2740 2763 0.983467 ACCACCCCCATTTTGAATGC 59.017 50.000 0.00 0.00 0.00 3.56
2757 2780 6.315393 CCAAACTTACATCACCATGTACTACC 59.685 42.308 0.00 0.00 43.86 3.18
2773 2796 6.465084 ACTTAGAGATCACCACCAAACTTAC 58.535 40.000 0.00 0.00 0.00 2.34
2785 2808 6.701145 TGAGACCATGTACTTAGAGATCAC 57.299 41.667 0.00 0.00 0.00 3.06
2788 2811 7.617723 AGAACTTGAGACCATGTACTTAGAGAT 59.382 37.037 0.00 0.00 31.40 2.75
2803 2826 4.636206 AGTTTTCACACCAGAACTTGAGAC 59.364 41.667 0.00 0.00 0.00 3.36
2808 2831 5.104485 ACCTAGAGTTTTCACACCAGAACTT 60.104 40.000 0.00 0.00 32.85 2.66
2811 2834 4.407621 TCACCTAGAGTTTTCACACCAGAA 59.592 41.667 0.00 0.00 0.00 3.02
2817 2840 5.607939 TCAGTTCACCTAGAGTTTTCACA 57.392 39.130 0.00 0.00 0.00 3.58
2828 2851 4.838423 TCTCAGGTTCAATCAGTTCACCTA 59.162 41.667 0.00 0.00 35.57 3.08
2839 2862 5.505181 ACACTACCATTCTCAGGTTCAAT 57.495 39.130 0.00 0.00 40.54 2.57
2848 2871 6.743575 ATGCTGTAAAACACTACCATTCTC 57.256 37.500 0.00 0.00 0.00 2.87
2849 2872 6.151144 GGAATGCTGTAAAACACTACCATTCT 59.849 38.462 0.00 0.00 37.10 2.40
2850 2873 6.151144 AGGAATGCTGTAAAACACTACCATTC 59.849 38.462 0.00 0.00 36.70 2.67
2863 2886 3.826157 CCTCCAACAAAGGAATGCTGTAA 59.174 43.478 0.00 0.00 37.20 2.41
2864 2887 3.181434 ACCTCCAACAAAGGAATGCTGTA 60.181 43.478 0.00 0.00 37.20 2.74
2868 2891 3.191371 CACTACCTCCAACAAAGGAATGC 59.809 47.826 0.00 0.00 37.20 3.56
2875 2898 3.042682 TCCAGACACTACCTCCAACAAA 58.957 45.455 0.00 0.00 0.00 2.83
2894 2917 3.686916 AAGAGGACACTAGCAAACTCC 57.313 47.619 0.00 0.00 0.00 3.85
2931 2956 5.540337 CAGATCTACCCACAAAGGCTAGATA 59.460 44.000 0.00 0.00 33.81 1.98
2941 2966 2.492088 CTGTCGTCAGATCTACCCACAA 59.508 50.000 3.36 0.00 43.76 3.33
2946 2971 2.032722 CGCTACTGTCGTCAGATCTACC 60.033 54.545 16.64 0.00 43.76 3.18
2957 2982 1.143373 TATTTGCGGCGCTACTGTCG 61.143 55.000 33.26 1.44 0.00 4.35
2960 2985 1.004927 GAACTATTTGCGGCGCTACTG 60.005 52.381 33.26 19.87 0.00 2.74
2987 3012 3.316308 AGTGCTTCAACAATGTGTCTTCC 59.684 43.478 0.00 0.00 0.00 3.46
2995 3020 4.923893 TGTGAGAAAGTGCTTCAACAATG 58.076 39.130 0.00 0.00 36.40 2.82
2996 3021 4.641989 ACTGTGAGAAAGTGCTTCAACAAT 59.358 37.500 0.00 0.00 34.38 2.71
3030 3056 7.669427 TGAATCTTTCTGTAAATGTGGCATTT 58.331 30.769 11.18 11.18 0.00 2.32
3035 3061 9.177608 TCCTTATGAATCTTTCTGTAAATGTGG 57.822 33.333 0.00 0.00 0.00 4.17
3073 4575 7.754924 CGAAGCAAACCACTGATAACATAAATT 59.245 33.333 0.00 0.00 0.00 1.82
3075 4577 6.428465 TCGAAGCAAACCACTGATAACATAAA 59.572 34.615 0.00 0.00 0.00 1.40
3076 4578 5.935206 TCGAAGCAAACCACTGATAACATAA 59.065 36.000 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.