Multiple sequence alignment - TraesCS2B01G387900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G387900 chr2B 100.000 2264 0 0 1 2264 551156850 551159113 0.000000e+00 4181.0
1 TraesCS2B01G387900 chr5A 90.793 1412 118 7 1 1404 671875950 671874543 0.000000e+00 1877.0
2 TraesCS2B01G387900 chr5A 90.581 1412 119 8 1 1404 547532919 547534324 0.000000e+00 1858.0
3 TraesCS2B01G387900 chr5A 91.253 926 70 4 493 1416 181455578 181456494 0.000000e+00 1251.0
4 TraesCS2B01G387900 chr5A 85.674 356 41 9 1446 1798 181456489 181456837 1.280000e-97 366.0
5 TraesCS2B01G387900 chr5A 87.209 86 10 1 1802 1887 181459897 181459981 1.850000e-16 97.1
6 TraesCS2B01G387900 chr6A 90.652 1412 120 7 1 1404 83359968 83361375 0.000000e+00 1866.0
7 TraesCS2B01G387900 chr1A 89.611 1415 116 14 1 1407 75741297 75739906 0.000000e+00 1770.0
8 TraesCS2B01G387900 chr4B 88.508 1401 152 8 3 1399 295124563 295123168 0.000000e+00 1687.0
9 TraesCS2B01G387900 chr4B 90.638 737 63 6 1 732 510388450 510389185 0.000000e+00 974.0
10 TraesCS2B01G387900 chr5D 89.506 1315 109 18 494 1798 177305679 177306974 0.000000e+00 1637.0
11 TraesCS2B01G387900 chr5D 84.783 92 13 1 1796 1887 177308167 177308257 8.610000e-15 91.6
12 TraesCS2B01G387900 chr6B 90.761 736 66 1 1 734 129396297 129397032 0.000000e+00 981.0
13 TraesCS2B01G387900 chr2D 90.650 738 65 1 1 734 52067252 52067989 0.000000e+00 977.0
14 TraesCS2B01G387900 chr5B 88.589 815 78 9 797 1606 191977047 191977851 0.000000e+00 976.0
15 TraesCS2B01G387900 chr2A 90.392 739 65 3 1 734 615517855 615517118 0.000000e+00 966.0
16 TraesCS2B01G387900 chr2A 86.390 698 82 9 725 1419 615517176 615516489 0.000000e+00 750.0
17 TraesCS2B01G387900 chr4A 87.356 696 84 2 725 1418 91226808 91226115 0.000000e+00 795.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G387900 chr2B 551156850 551159113 2263 False 4181.000000 4181 100.000000 1 2264 1 chr2B.!!$F1 2263
1 TraesCS2B01G387900 chr5A 671874543 671875950 1407 True 1877.000000 1877 90.793000 1 1404 1 chr5A.!!$R1 1403
2 TraesCS2B01G387900 chr5A 547532919 547534324 1405 False 1858.000000 1858 90.581000 1 1404 1 chr5A.!!$F1 1403
3 TraesCS2B01G387900 chr5A 181455578 181459981 4403 False 571.366667 1251 88.045333 493 1887 3 chr5A.!!$F2 1394
4 TraesCS2B01G387900 chr6A 83359968 83361375 1407 False 1866.000000 1866 90.652000 1 1404 1 chr6A.!!$F1 1403
5 TraesCS2B01G387900 chr1A 75739906 75741297 1391 True 1770.000000 1770 89.611000 1 1407 1 chr1A.!!$R1 1406
6 TraesCS2B01G387900 chr4B 295123168 295124563 1395 True 1687.000000 1687 88.508000 3 1399 1 chr4B.!!$R1 1396
7 TraesCS2B01G387900 chr4B 510388450 510389185 735 False 974.000000 974 90.638000 1 732 1 chr4B.!!$F1 731
8 TraesCS2B01G387900 chr5D 177305679 177308257 2578 False 864.300000 1637 87.144500 494 1887 2 chr5D.!!$F1 1393
9 TraesCS2B01G387900 chr6B 129396297 129397032 735 False 981.000000 981 90.761000 1 734 1 chr6B.!!$F1 733
10 TraesCS2B01G387900 chr2D 52067252 52067989 737 False 977.000000 977 90.650000 1 734 1 chr2D.!!$F1 733
11 TraesCS2B01G387900 chr5B 191977047 191977851 804 False 976.000000 976 88.589000 797 1606 1 chr5B.!!$F1 809
12 TraesCS2B01G387900 chr2A 615516489 615517855 1366 True 858.000000 966 88.391000 1 1419 2 chr2A.!!$R1 1418
13 TraesCS2B01G387900 chr4A 91226115 91226808 693 True 795.000000 795 87.356000 725 1418 1 chr4A.!!$R1 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 947 0.689623 CCAACTTCCAGAGAGGTGCT 59.31 55.0 0.0 0.0 39.02 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 5215 0.037303 ACCCTCATTGCACACCTGAG 59.963 55.0 7.47 7.47 36.89 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.762381 ATCCATAGTTGGGAAGTATTGTAAAAA 57.238 29.630 0.00 0.00 43.81 1.94
31 32 9.016438 TCCATAGTTGGGAAGTATTGTAAAAAC 57.984 33.333 0.00 0.00 43.81 2.43
75 76 7.222000 CTAGGACATCTAGGTTAAGTGGATC 57.778 44.000 0.00 0.00 41.30 3.36
76 77 4.902448 AGGACATCTAGGTTAAGTGGATCC 59.098 45.833 4.20 4.20 0.00 3.36
90 91 0.740737 GGATCCGAATGGTTGCAAGG 59.259 55.000 0.00 0.00 36.30 3.61
98 99 4.196193 CGAATGGTTGCAAGGGACTATTA 58.804 43.478 0.00 0.00 38.49 0.98
107 108 2.238646 CAAGGGACTATTAGCACACCCA 59.761 50.000 0.00 0.00 38.49 4.51
136 137 6.146184 AGACGTACACAATGTTGAGAATGAAG 59.854 38.462 0.00 0.00 0.00 3.02
223 224 6.091441 GCTTTGTTACCACTTATGAGTCTCTG 59.909 42.308 0.65 0.00 32.54 3.35
273 278 5.779771 TGAAGCAAATAGGAGAACCCAAAAT 59.220 36.000 0.00 0.00 37.41 1.82
275 280 5.332743 AGCAAATAGGAGAACCCAAAATCA 58.667 37.500 0.00 0.00 37.41 2.57
298 303 3.342377 TCAAACATGGAGCGGATACAA 57.658 42.857 0.00 0.00 0.00 2.41
325 330 4.159879 ACCGTAAGTTCCATGAGGTTCTAG 59.840 45.833 0.00 0.00 35.89 2.43
367 372 4.737855 TCTCACTACATTAGGCCTCAAC 57.262 45.455 9.68 0.00 0.00 3.18
425 430 2.678336 GTGACAAAAGGGCTTATCCTCG 59.322 50.000 0.00 0.00 35.80 4.63
473 478 3.576078 TGGGACACATATTAGGGCTTG 57.424 47.619 0.00 0.00 0.00 4.01
478 483 6.068670 GGGACACATATTAGGGCTTGTATTT 58.931 40.000 0.00 0.00 0.00 1.40
491 496 4.767409 GGCTTGTATTTCAGAAGGACCTTT 59.233 41.667 8.49 0.00 0.00 3.11
551 556 3.943381 CAGAATGTGATGGCAGTATGTGT 59.057 43.478 0.00 0.00 39.31 3.72
636 641 4.151157 GTGCTCTTCCATGCAATTGAAAAC 59.849 41.667 10.34 0.00 41.10 2.43
670 675 1.609783 CCACATCCTCCCAAGGGTC 59.390 63.158 4.80 0.00 43.56 4.46
681 686 4.265073 CTCCCAAGGGTCAGTATTTCTTG 58.735 47.826 4.80 0.00 35.80 3.02
727 732 3.930229 CCTCCAATTCACATGCATGTTTG 59.070 43.478 29.48 27.21 39.39 2.93
740 745 6.037940 ACATGCATGTTTGTTGTTATTGCAAA 59.962 30.769 26.61 0.00 37.90 3.68
842 898 6.676164 TCCTAATAGGGATGGCTATCTAGT 57.324 41.667 10.15 0.00 35.59 2.57
891 947 0.689623 CCAACTTCCAGAGAGGTGCT 59.310 55.000 0.00 0.00 39.02 4.40
917 973 3.377798 CCAACTACTCCCGTAGAGAAGTC 59.622 52.174 6.70 0.00 46.50 3.01
970 1027 4.508662 CATAGAGAGAACCTTTGGTGTCC 58.491 47.826 0.00 0.00 35.34 4.02
989 1046 4.217550 TGTCCGGAAGATGAAATGGAAAAC 59.782 41.667 5.23 0.00 0.00 2.43
1008 1065 4.953940 AACCTTGCTTAAGATGCCAAAA 57.046 36.364 6.67 0.00 0.00 2.44
1057 1115 5.932619 TGTTGTGGCTACTATGACACTAT 57.067 39.130 0.64 0.00 45.67 2.12
1065 1123 8.794553 GTGGCTACTATGACACTATACAACTAT 58.205 37.037 0.00 0.00 42.39 2.12
1108 1166 2.930826 TCTCCACTTCCTTTGGTGTC 57.069 50.000 0.00 0.00 35.42 3.67
1117 1175 2.348472 TCCTTTGGTGTCAGAGGGATT 58.652 47.619 3.62 0.00 43.35 3.01
1149 1207 7.921041 TGTTCCAACTATTCCAGAGAGATAT 57.079 36.000 0.00 0.00 0.00 1.63
1156 1214 9.638239 CAACTATTCCAGAGAGATATAAGAAGC 57.362 37.037 0.00 0.00 0.00 3.86
1199 1257 1.369091 GATGCTTCAACATCGGCGGT 61.369 55.000 7.21 0.00 37.32 5.68
1255 1313 0.462759 AGCTACCGCCATTGCTCTTC 60.463 55.000 0.00 0.00 36.60 2.87
1256 1314 0.744414 GCTACCGCCATTGCTCTTCA 60.744 55.000 0.00 0.00 34.43 3.02
1280 1338 5.565592 TGGTGAAGTAATCATGTTCATGC 57.434 39.130 7.80 0.00 40.97 4.06
1298 1356 0.324275 GCCTTTAGATGGGTGGCCAA 60.324 55.000 7.24 0.00 37.81 4.52
1310 1369 2.078392 GGTGGCCAATTTGATTTGCAG 58.922 47.619 7.24 0.00 32.98 4.41
1350 1409 8.412456 TGAAGCTTTTGTTCTATGACAAATGAA 58.588 29.630 15.92 0.00 45.76 2.57
1491 1554 6.700520 GGCTATAACACAGTAGGTCATTGTAC 59.299 42.308 0.00 0.00 0.00 2.90
1496 1559 5.005740 ACACAGTAGGTCATTGTACGACTA 58.994 41.667 0.00 0.00 33.73 2.59
1499 1562 5.353678 ACAGTAGGTCATTGTACGACTAGAC 59.646 44.000 0.00 4.39 33.73 2.59
1539 1602 4.461781 CAGAATCAGGACTTCATGCCTTTT 59.538 41.667 0.00 0.00 30.41 2.27
1545 1608 5.006386 CAGGACTTCATGCCTTTTCTAGTT 58.994 41.667 0.00 0.00 30.41 2.24
1551 1614 6.547510 ACTTCATGCCTTTTCTAGTTCAACTT 59.452 34.615 0.00 0.00 0.00 2.66
1559 1622 7.355778 CCTTTTCTAGTTCAACTTGCTAACAG 58.644 38.462 0.00 0.00 0.00 3.16
1579 1642 7.640597 AACAGCTAGTCCTTTTACAAAACTT 57.359 32.000 0.00 0.00 0.00 2.66
1609 1673 9.953825 GTACATCTTTCTGTACACTAAAATTCG 57.046 33.333 8.98 0.00 46.94 3.34
1610 1674 8.827177 ACATCTTTCTGTACACTAAAATTCGA 57.173 30.769 0.00 0.00 0.00 3.71
1611 1675 9.268268 ACATCTTTCTGTACACTAAAATTCGAA 57.732 29.630 0.00 0.00 0.00 3.71
1612 1676 9.746711 CATCTTTCTGTACACTAAAATTCGAAG 57.253 33.333 3.35 0.00 0.00 3.79
1623 1687 5.642491 ACTAAAATTCGAAGCAACTAGTCCC 59.358 40.000 3.35 0.00 0.00 4.46
1624 1688 2.693267 ATTCGAAGCAACTAGTCCCC 57.307 50.000 3.35 0.00 0.00 4.81
1691 1757 2.025416 TGCAGCCCAAGCCTTTTATCTA 60.025 45.455 0.00 0.00 41.25 1.98
1693 1759 4.141274 TGCAGCCCAAGCCTTTTATCTATA 60.141 41.667 0.00 0.00 41.25 1.31
1694 1760 4.457257 GCAGCCCAAGCCTTTTATCTATAG 59.543 45.833 0.00 0.00 41.25 1.31
1699 1765 7.839200 AGCCCAAGCCTTTTATCTATAGAAAAA 59.161 33.333 6.52 12.73 41.25 1.94
1713 1779 2.142357 GAAAAACAGCCAGGCCCGAC 62.142 60.000 8.22 0.00 0.00 4.79
1754 1820 1.277557 CCAAACTCTAGCTGAGCAGGT 59.722 52.381 7.39 7.40 46.41 4.00
1764 1830 2.350514 GAGCAGGTCAGCAGCCTT 59.649 61.111 0.00 0.00 36.85 4.35
1769 1835 0.035881 CAGGTCAGCAGCCTTCTCAA 59.964 55.000 0.00 0.00 33.31 3.02
1772 1838 1.004560 TCAGCAGCCTTCTCAACGG 60.005 57.895 0.00 0.00 0.00 4.44
1773 1839 2.037136 CAGCAGCCTTCTCAACGGG 61.037 63.158 0.00 0.00 0.00 5.28
1781 1847 1.533625 CTTCTCAACGGGCCAAATCA 58.466 50.000 4.39 0.00 0.00 2.57
1785 1851 0.893270 TCAACGGGCCAAATCACTGG 60.893 55.000 4.39 0.00 39.71 4.00
1800 4996 1.751351 CACTGGGAGAAGCTACGATGA 59.249 52.381 0.00 0.00 0.00 2.92
1809 5005 1.856012 GCTACGATGAGCGGAATGC 59.144 57.895 0.00 0.00 46.49 3.56
1822 5018 1.278038 GAATGCTTCGCTGATCGCC 59.722 57.895 4.37 0.00 38.27 5.54
1833 5029 0.742281 CTGATCGCCAGGTGGAGTTG 60.742 60.000 0.00 0.00 39.23 3.16
1838 5034 1.761174 GCCAGGTGGAGTTGGAAGA 59.239 57.895 0.00 0.00 36.55 2.87
1878 5074 6.597832 TTTTGAGGAGTTTTGGAAGTTCAA 57.402 33.333 5.01 0.00 0.00 2.69
1879 5075 5.576447 TTGAGGAGTTTTGGAAGTTCAAC 57.424 39.130 5.01 0.93 0.00 3.18
1880 5076 4.594970 TGAGGAGTTTTGGAAGTTCAACA 58.405 39.130 5.01 0.00 0.00 3.33
1881 5077 4.640201 TGAGGAGTTTTGGAAGTTCAACAG 59.360 41.667 5.01 0.00 0.00 3.16
1882 5078 4.855340 AGGAGTTTTGGAAGTTCAACAGA 58.145 39.130 5.01 0.00 0.00 3.41
1884 5080 4.036852 GGAGTTTTGGAAGTTCAACAGAGG 59.963 45.833 5.01 0.00 0.00 3.69
1885 5081 4.855340 AGTTTTGGAAGTTCAACAGAGGA 58.145 39.130 5.01 0.00 0.00 3.71
1886 5082 5.449553 AGTTTTGGAAGTTCAACAGAGGAT 58.550 37.500 5.01 0.00 0.00 3.24
1887 5083 5.532779 AGTTTTGGAAGTTCAACAGAGGATC 59.467 40.000 5.01 0.00 0.00 3.36
1888 5084 4.705110 TTGGAAGTTCAACAGAGGATCA 57.295 40.909 5.01 0.00 37.82 2.92
1889 5085 4.705110 TGGAAGTTCAACAGAGGATCAA 57.295 40.909 5.01 0.00 37.82 2.57
1890 5086 5.047566 TGGAAGTTCAACAGAGGATCAAA 57.952 39.130 5.01 0.00 37.82 2.69
1891 5087 5.445069 TGGAAGTTCAACAGAGGATCAAAA 58.555 37.500 5.01 0.00 37.82 2.44
1892 5088 5.299279 TGGAAGTTCAACAGAGGATCAAAAC 59.701 40.000 5.01 0.00 37.82 2.43
1893 5089 5.532779 GGAAGTTCAACAGAGGATCAAAACT 59.467 40.000 5.01 0.00 37.82 2.66
1894 5090 6.382869 AAGTTCAACAGAGGATCAAAACTG 57.617 37.500 0.00 0.00 37.82 3.16
1895 5091 4.823989 AGTTCAACAGAGGATCAAAACTGG 59.176 41.667 0.00 0.00 37.82 4.00
1896 5092 3.149196 TCAACAGAGGATCAAAACTGGC 58.851 45.455 0.00 0.00 37.82 4.85
1897 5093 2.206576 ACAGAGGATCAAAACTGGCC 57.793 50.000 0.00 0.00 37.82 5.36
1898 5094 1.272147 ACAGAGGATCAAAACTGGCCC 60.272 52.381 0.00 0.00 37.82 5.80
1899 5095 1.005215 CAGAGGATCAAAACTGGCCCT 59.995 52.381 0.00 0.00 37.82 5.19
1900 5096 1.005215 AGAGGATCAAAACTGGCCCTG 59.995 52.381 0.00 0.00 37.82 4.45
1901 5097 1.004745 GAGGATCAAAACTGGCCCTGA 59.995 52.381 0.00 0.00 33.17 3.86
1902 5098 1.428912 AGGATCAAAACTGGCCCTGAA 59.571 47.619 0.00 0.00 0.00 3.02
1903 5099 1.821136 GGATCAAAACTGGCCCTGAAG 59.179 52.381 0.00 0.00 0.00 3.02
1904 5100 1.203287 GATCAAAACTGGCCCTGAAGC 59.797 52.381 0.00 0.00 0.00 3.86
1905 5101 0.185901 TCAAAACTGGCCCTGAAGCT 59.814 50.000 0.00 0.00 0.00 3.74
1906 5102 1.043022 CAAAACTGGCCCTGAAGCTT 58.957 50.000 0.00 0.00 0.00 3.74
1907 5103 1.043022 AAAACTGGCCCTGAAGCTTG 58.957 50.000 2.10 0.00 0.00 4.01
1908 5104 0.185901 AAACTGGCCCTGAAGCTTGA 59.814 50.000 2.10 0.00 0.00 3.02
1909 5105 0.538287 AACTGGCCCTGAAGCTTGAC 60.538 55.000 2.10 0.00 0.00 3.18
1910 5106 2.032528 TGGCCCTGAAGCTTGACG 59.967 61.111 2.10 0.00 0.00 4.35
1911 5107 2.347490 GGCCCTGAAGCTTGACGA 59.653 61.111 2.10 0.00 0.00 4.20
1912 5108 1.302511 GGCCCTGAAGCTTGACGAA 60.303 57.895 2.10 0.00 0.00 3.85
1913 5109 0.889186 GGCCCTGAAGCTTGACGAAA 60.889 55.000 2.10 0.00 0.00 3.46
1914 5110 0.238553 GCCCTGAAGCTTGACGAAAC 59.761 55.000 2.10 0.00 0.00 2.78
1915 5111 1.884235 CCCTGAAGCTTGACGAAACT 58.116 50.000 2.10 0.00 0.00 2.66
1916 5112 2.222027 CCCTGAAGCTTGACGAAACTT 58.778 47.619 2.10 0.00 0.00 2.66
1917 5113 3.399330 CCCTGAAGCTTGACGAAACTTA 58.601 45.455 2.10 0.00 0.00 2.24
1918 5114 4.003648 CCCTGAAGCTTGACGAAACTTAT 58.996 43.478 2.10 0.00 0.00 1.73
1919 5115 4.142816 CCCTGAAGCTTGACGAAACTTATG 60.143 45.833 2.10 0.00 0.00 1.90
1920 5116 4.452455 CCTGAAGCTTGACGAAACTTATGT 59.548 41.667 2.10 0.00 0.00 2.29
1921 5117 5.637810 CCTGAAGCTTGACGAAACTTATGTA 59.362 40.000 2.10 0.00 0.00 2.29
1922 5118 6.183360 CCTGAAGCTTGACGAAACTTATGTAG 60.183 42.308 2.10 0.00 0.00 2.74
1923 5119 6.220930 TGAAGCTTGACGAAACTTATGTAGT 58.779 36.000 2.10 0.00 39.32 2.73
1924 5120 7.372714 TGAAGCTTGACGAAACTTATGTAGTA 58.627 34.615 2.10 0.00 35.54 1.82
1925 5121 8.033038 TGAAGCTTGACGAAACTTATGTAGTAT 58.967 33.333 2.10 0.00 35.54 2.12
1926 5122 8.773404 AAGCTTGACGAAACTTATGTAGTATT 57.227 30.769 0.00 0.00 35.54 1.89
1927 5123 8.186178 AGCTTGACGAAACTTATGTAGTATTG 57.814 34.615 0.00 0.00 35.54 1.90
1928 5124 7.277981 AGCTTGACGAAACTTATGTAGTATTGG 59.722 37.037 0.00 0.00 35.54 3.16
1929 5125 7.064253 GCTTGACGAAACTTATGTAGTATTGGT 59.936 37.037 0.00 0.00 35.54 3.67
1930 5126 9.577110 CTTGACGAAACTTATGTAGTATTGGTA 57.423 33.333 0.00 0.00 35.54 3.25
1931 5127 9.577110 TTGACGAAACTTATGTAGTATTGGTAG 57.423 33.333 0.00 0.00 35.54 3.18
1932 5128 8.742777 TGACGAAACTTATGTAGTATTGGTAGT 58.257 33.333 0.00 0.00 35.54 2.73
1933 5129 9.230932 GACGAAACTTATGTAGTATTGGTAGTC 57.769 37.037 0.00 0.00 35.54 2.59
1934 5130 8.193438 ACGAAACTTATGTAGTATTGGTAGTCC 58.807 37.037 0.00 0.00 35.54 3.85
1935 5131 8.411683 CGAAACTTATGTAGTATTGGTAGTCCT 58.588 37.037 0.00 0.00 35.54 3.85
1936 5132 9.530633 GAAACTTATGTAGTATTGGTAGTCCTG 57.469 37.037 0.00 0.00 35.54 3.86
1937 5133 7.598759 ACTTATGTAGTATTGGTAGTCCTGG 57.401 40.000 0.00 0.00 34.56 4.45
1938 5134 4.957684 ATGTAGTATTGGTAGTCCTGGC 57.042 45.455 0.00 0.00 34.23 4.85
1939 5135 3.990369 TGTAGTATTGGTAGTCCTGGCT 58.010 45.455 0.00 0.00 34.23 4.75
1940 5136 3.958798 TGTAGTATTGGTAGTCCTGGCTC 59.041 47.826 0.00 0.00 34.23 4.70
1941 5137 3.116096 AGTATTGGTAGTCCTGGCTCA 57.884 47.619 0.00 0.00 34.23 4.26
1942 5138 3.658725 AGTATTGGTAGTCCTGGCTCAT 58.341 45.455 0.00 0.00 34.23 2.90
1943 5139 3.643792 AGTATTGGTAGTCCTGGCTCATC 59.356 47.826 0.00 0.00 34.23 2.92
1944 5140 2.254152 TTGGTAGTCCTGGCTCATCT 57.746 50.000 0.00 0.00 34.23 2.90
1945 5141 1.489481 TGGTAGTCCTGGCTCATCTG 58.511 55.000 0.00 0.00 34.23 2.90
1946 5142 0.105778 GGTAGTCCTGGCTCATCTGC 59.894 60.000 0.00 0.00 0.00 4.26
1947 5143 1.118838 GTAGTCCTGGCTCATCTGCT 58.881 55.000 0.00 0.00 0.00 4.24
1948 5144 1.068434 GTAGTCCTGGCTCATCTGCTC 59.932 57.143 0.00 0.00 0.00 4.26
1949 5145 1.145819 GTCCTGGCTCATCTGCTCC 59.854 63.158 0.00 0.00 0.00 4.70
1950 5146 2.068821 TCCTGGCTCATCTGCTCCC 61.069 63.158 0.00 0.00 0.00 4.30
1951 5147 2.108566 CTGGCTCATCTGCTCCCG 59.891 66.667 0.00 0.00 0.00 5.14
1952 5148 2.364186 TGGCTCATCTGCTCCCGA 60.364 61.111 0.00 0.00 0.00 5.14
1953 5149 1.756408 CTGGCTCATCTGCTCCCGAT 61.756 60.000 0.00 0.00 0.00 4.18
1954 5150 1.301558 GGCTCATCTGCTCCCGATG 60.302 63.158 0.00 0.00 39.62 3.84
1955 5151 1.744639 GCTCATCTGCTCCCGATGA 59.255 57.895 0.00 0.00 43.52 2.92
1956 5152 0.105593 GCTCATCTGCTCCCGATGAA 59.894 55.000 4.52 0.00 44.62 2.57
1957 5153 1.863267 CTCATCTGCTCCCGATGAAC 58.137 55.000 4.52 0.00 44.62 3.18
1958 5154 0.103026 TCATCTGCTCCCGATGAACG 59.897 55.000 0.60 0.00 42.97 3.95
1974 5170 7.845617 CGATGAACGGTTAATTCAAAGAAAA 57.154 32.000 0.00 0.00 39.43 2.29
1975 5171 7.707511 CGATGAACGGTTAATTCAAAGAAAAC 58.292 34.615 0.00 0.00 39.43 2.43
1976 5172 7.589954 CGATGAACGGTTAATTCAAAGAAAACT 59.410 33.333 0.00 0.00 39.43 2.66
1977 5173 9.887406 GATGAACGGTTAATTCAAAGAAAACTA 57.113 29.630 0.00 0.00 39.43 2.24
1981 5177 9.857957 AACGGTTAATTCAAAGAAAACTAAACA 57.142 25.926 0.00 0.00 0.00 2.83
1982 5178 9.857957 ACGGTTAATTCAAAGAAAACTAAACAA 57.142 25.926 0.00 0.00 0.00 2.83
2018 5214 9.850628 ATCTAAAAATATTTGGCATCGATGATG 57.149 29.630 29.20 4.66 42.37 3.07
2027 5223 2.235845 CATCGATGATGCTCAGGTGT 57.764 50.000 21.02 0.00 33.17 4.16
2028 5224 1.865340 CATCGATGATGCTCAGGTGTG 59.135 52.381 21.02 0.00 33.17 3.82
2029 5225 0.460811 TCGATGATGCTCAGGTGTGC 60.461 55.000 0.00 0.00 35.32 4.57
2030 5226 0.741927 CGATGATGCTCAGGTGTGCA 60.742 55.000 9.00 9.00 46.58 4.57
2031 5227 1.456296 GATGATGCTCAGGTGTGCAA 58.544 50.000 10.49 0.00 45.82 4.08
2032 5228 2.022195 GATGATGCTCAGGTGTGCAAT 58.978 47.619 10.49 1.49 45.82 3.56
2033 5229 1.170442 TGATGCTCAGGTGTGCAATG 58.830 50.000 10.49 0.00 45.82 2.82
2034 5230 1.271488 TGATGCTCAGGTGTGCAATGA 60.271 47.619 10.49 0.00 45.82 2.57
2035 5231 1.400846 GATGCTCAGGTGTGCAATGAG 59.599 52.381 10.49 12.68 45.82 2.90
2036 5232 0.607217 TGCTCAGGTGTGCAATGAGG 60.607 55.000 16.63 0.00 40.94 3.86
2037 5233 1.310933 GCTCAGGTGTGCAATGAGGG 61.311 60.000 16.63 0.00 40.64 4.30
2038 5234 0.037303 CTCAGGTGTGCAATGAGGGT 59.963 55.000 10.22 0.00 37.41 4.34
2039 5235 1.278985 CTCAGGTGTGCAATGAGGGTA 59.721 52.381 10.22 0.00 37.41 3.69
2040 5236 1.003118 TCAGGTGTGCAATGAGGGTAC 59.997 52.381 0.00 0.00 0.00 3.34
2041 5237 1.064003 AGGTGTGCAATGAGGGTACA 58.936 50.000 0.00 0.00 0.00 2.90
2042 5238 1.165270 GGTGTGCAATGAGGGTACAC 58.835 55.000 5.39 5.39 46.75 2.90
2043 5239 1.890876 GTGTGCAATGAGGGTACACA 58.109 50.000 0.00 0.00 46.71 3.72
2044 5240 2.436417 GTGTGCAATGAGGGTACACAT 58.564 47.619 0.00 0.00 46.71 3.21
2045 5241 2.819608 GTGTGCAATGAGGGTACACATT 59.180 45.455 0.00 2.25 46.71 2.71
2046 5242 3.255642 GTGTGCAATGAGGGTACACATTT 59.744 43.478 0.00 0.00 46.71 2.32
2047 5243 3.894427 TGTGCAATGAGGGTACACATTTT 59.106 39.130 0.00 0.00 36.39 1.82
2048 5244 4.022416 TGTGCAATGAGGGTACACATTTTC 60.022 41.667 0.00 1.08 36.39 2.29
2049 5245 3.190327 TGCAATGAGGGTACACATTTTCG 59.810 43.478 0.00 0.00 35.51 3.46
2050 5246 3.190535 GCAATGAGGGTACACATTTTCGT 59.809 43.478 0.00 0.00 35.51 3.85
2051 5247 4.320935 GCAATGAGGGTACACATTTTCGTT 60.321 41.667 0.00 0.00 35.51 3.85
2052 5248 5.153513 CAATGAGGGTACACATTTTCGTTG 58.846 41.667 0.00 0.10 35.51 4.10
2053 5249 3.811083 TGAGGGTACACATTTTCGTTGT 58.189 40.909 0.00 0.00 0.00 3.32
2061 5257 4.753516 CACATTTTCGTTGTGTTTGGAC 57.246 40.909 0.00 0.00 39.66 4.02
2062 5258 4.169508 CACATTTTCGTTGTGTTTGGACA 58.830 39.130 0.00 0.00 39.66 4.02
2063 5259 4.803088 CACATTTTCGTTGTGTTTGGACAT 59.197 37.500 0.00 0.00 39.66 3.06
2064 5260 5.290643 CACATTTTCGTTGTGTTTGGACATT 59.709 36.000 0.00 0.00 39.66 2.71
2065 5261 5.518487 ACATTTTCGTTGTGTTTGGACATTC 59.482 36.000 0.00 0.00 38.23 2.67
2066 5262 3.326733 TTCGTTGTGTTTGGACATTCG 57.673 42.857 0.00 0.00 38.23 3.34
2067 5263 2.552031 TCGTTGTGTTTGGACATTCGA 58.448 42.857 0.00 0.00 38.23 3.71
2068 5264 2.542178 TCGTTGTGTTTGGACATTCGAG 59.458 45.455 0.00 0.00 38.23 4.04
2069 5265 2.349438 CGTTGTGTTTGGACATTCGAGG 60.349 50.000 0.00 0.00 38.23 4.63
2070 5266 2.875933 GTTGTGTTTGGACATTCGAGGA 59.124 45.455 0.00 0.00 38.23 3.71
2071 5267 2.489971 TGTGTTTGGACATTCGAGGAC 58.510 47.619 0.00 0.00 38.23 3.85
2072 5268 1.804748 GTGTTTGGACATTCGAGGACC 59.195 52.381 1.74 1.74 38.23 4.46
2073 5269 1.697432 TGTTTGGACATTCGAGGACCT 59.303 47.619 0.00 0.00 0.00 3.85
2074 5270 2.105821 TGTTTGGACATTCGAGGACCTT 59.894 45.455 0.00 0.00 0.00 3.50
2075 5271 3.146847 GTTTGGACATTCGAGGACCTTT 58.853 45.455 0.00 0.00 0.00 3.11
2076 5272 4.202377 TGTTTGGACATTCGAGGACCTTTA 60.202 41.667 0.00 0.00 0.00 1.85
2077 5273 3.887621 TGGACATTCGAGGACCTTTAG 57.112 47.619 0.00 0.00 0.00 1.85
2078 5274 2.500098 TGGACATTCGAGGACCTTTAGG 59.500 50.000 0.00 0.00 42.17 2.69
2079 5275 2.764572 GGACATTCGAGGACCTTTAGGA 59.235 50.000 2.06 0.00 38.94 2.94
2080 5276 3.197116 GGACATTCGAGGACCTTTAGGAA 59.803 47.826 2.06 0.00 38.94 3.36
2081 5277 4.323257 GGACATTCGAGGACCTTTAGGAAA 60.323 45.833 2.06 0.00 38.94 3.13
2082 5278 5.237236 ACATTCGAGGACCTTTAGGAAAA 57.763 39.130 2.06 0.00 38.94 2.29
2083 5279 5.816682 ACATTCGAGGACCTTTAGGAAAAT 58.183 37.500 2.06 0.00 38.94 1.82
2084 5280 6.954232 ACATTCGAGGACCTTTAGGAAAATA 58.046 36.000 2.06 0.00 38.94 1.40
2085 5281 7.048512 ACATTCGAGGACCTTTAGGAAAATAG 58.951 38.462 2.06 0.00 38.94 1.73
2086 5282 6.862469 TTCGAGGACCTTTAGGAAAATAGA 57.138 37.500 2.06 0.00 38.94 1.98
2087 5283 6.218108 TCGAGGACCTTTAGGAAAATAGAC 57.782 41.667 2.06 0.00 38.94 2.59
2088 5284 5.041940 CGAGGACCTTTAGGAAAATAGACG 58.958 45.833 2.06 0.00 38.94 4.18
2089 5285 5.163581 CGAGGACCTTTAGGAAAATAGACGA 60.164 44.000 2.06 0.00 38.94 4.20
2090 5286 6.223351 AGGACCTTTAGGAAAATAGACGAG 57.777 41.667 2.06 0.00 38.94 4.18
2091 5287 5.720520 AGGACCTTTAGGAAAATAGACGAGT 59.279 40.000 2.06 0.00 38.94 4.18
2092 5288 6.894103 AGGACCTTTAGGAAAATAGACGAGTA 59.106 38.462 2.06 0.00 38.94 2.59
2093 5289 7.564292 AGGACCTTTAGGAAAATAGACGAGTAT 59.436 37.037 2.06 0.00 38.94 2.12
2094 5290 7.866898 GGACCTTTAGGAAAATAGACGAGTATC 59.133 40.741 2.06 0.00 38.94 2.24
2110 5306 4.612943 GAGTATCGACCATGTCTTCTTCC 58.387 47.826 0.00 0.00 0.00 3.46
2111 5307 4.282496 AGTATCGACCATGTCTTCTTCCT 58.718 43.478 0.00 0.00 0.00 3.36
2112 5308 3.810310 ATCGACCATGTCTTCTTCCTC 57.190 47.619 0.00 0.00 0.00 3.71
2113 5309 2.525368 TCGACCATGTCTTCTTCCTCA 58.475 47.619 0.00 0.00 0.00 3.86
2114 5310 2.897326 TCGACCATGTCTTCTTCCTCAA 59.103 45.455 0.00 0.00 0.00 3.02
2115 5311 3.515502 TCGACCATGTCTTCTTCCTCAAT 59.484 43.478 0.00 0.00 0.00 2.57
2116 5312 4.020218 TCGACCATGTCTTCTTCCTCAATT 60.020 41.667 0.00 0.00 0.00 2.32
2117 5313 4.331168 CGACCATGTCTTCTTCCTCAATTC 59.669 45.833 0.00 0.00 0.00 2.17
2118 5314 4.593956 ACCATGTCTTCTTCCTCAATTCC 58.406 43.478 0.00 0.00 0.00 3.01
2119 5315 3.624861 CCATGTCTTCTTCCTCAATTCCG 59.375 47.826 0.00 0.00 0.00 4.30
2120 5316 3.334583 TGTCTTCTTCCTCAATTCCGG 57.665 47.619 0.00 0.00 0.00 5.14
2121 5317 2.010497 GTCTTCTTCCTCAATTCCGGC 58.990 52.381 0.00 0.00 0.00 6.13
2122 5318 1.628340 TCTTCTTCCTCAATTCCGGCA 59.372 47.619 0.00 0.00 0.00 5.69
2123 5319 2.239654 TCTTCTTCCTCAATTCCGGCAT 59.760 45.455 0.00 0.00 0.00 4.40
2124 5320 2.332063 TCTTCCTCAATTCCGGCATC 57.668 50.000 0.00 0.00 0.00 3.91
2125 5321 0.940126 CTTCCTCAATTCCGGCATCG 59.060 55.000 0.00 0.00 0.00 3.84
2126 5322 0.539518 TTCCTCAATTCCGGCATCGA 59.460 50.000 0.00 0.00 39.00 3.59
2127 5323 0.179084 TCCTCAATTCCGGCATCGAC 60.179 55.000 0.00 0.00 39.00 4.20
2128 5324 1.160329 CCTCAATTCCGGCATCGACC 61.160 60.000 0.00 0.00 39.00 4.79
2138 5334 4.457496 CATCGACCGCTGGCACCT 62.457 66.667 0.00 0.00 0.00 4.00
2139 5335 3.706373 ATCGACCGCTGGCACCTT 61.706 61.111 0.00 0.00 0.00 3.50
2140 5336 3.958147 ATCGACCGCTGGCACCTTG 62.958 63.158 0.00 0.00 0.00 3.61
2141 5337 4.680237 CGACCGCTGGCACCTTGA 62.680 66.667 0.00 0.00 0.00 3.02
2142 5338 2.045926 GACCGCTGGCACCTTGAT 60.046 61.111 0.00 0.00 0.00 2.57
2143 5339 1.220749 GACCGCTGGCACCTTGATA 59.779 57.895 0.00 0.00 0.00 2.15
2144 5340 0.179045 GACCGCTGGCACCTTGATAT 60.179 55.000 0.00 0.00 0.00 1.63
2145 5341 0.179045 ACCGCTGGCACCTTGATATC 60.179 55.000 0.00 0.00 0.00 1.63
2146 5342 0.107456 CCGCTGGCACCTTGATATCT 59.893 55.000 3.98 0.00 0.00 1.98
2147 5343 1.475751 CCGCTGGCACCTTGATATCTT 60.476 52.381 3.98 0.00 0.00 2.40
2148 5344 1.869767 CGCTGGCACCTTGATATCTTC 59.130 52.381 3.98 0.00 0.00 2.87
2149 5345 2.225467 GCTGGCACCTTGATATCTTCC 58.775 52.381 3.98 0.00 0.00 3.46
2150 5346 2.158696 GCTGGCACCTTGATATCTTCCT 60.159 50.000 3.98 0.00 0.00 3.36
2151 5347 3.737850 CTGGCACCTTGATATCTTCCTC 58.262 50.000 3.98 0.00 0.00 3.71
2152 5348 2.439507 TGGCACCTTGATATCTTCCTCC 59.560 50.000 3.98 0.00 0.00 4.30
2153 5349 2.439507 GGCACCTTGATATCTTCCTCCA 59.560 50.000 3.98 0.00 0.00 3.86
2154 5350 3.495806 GGCACCTTGATATCTTCCTCCAG 60.496 52.174 3.98 0.00 0.00 3.86
2155 5351 3.737850 CACCTTGATATCTTCCTCCAGC 58.262 50.000 3.98 0.00 0.00 4.85
2156 5352 2.366916 ACCTTGATATCTTCCTCCAGCG 59.633 50.000 3.98 0.00 0.00 5.18
2157 5353 2.630098 CCTTGATATCTTCCTCCAGCGA 59.370 50.000 3.98 0.00 0.00 4.93
2158 5354 3.305950 CCTTGATATCTTCCTCCAGCGAG 60.306 52.174 3.98 0.00 35.72 5.03
2159 5355 1.615883 TGATATCTTCCTCCAGCGAGC 59.384 52.381 3.98 0.00 34.49 5.03
2160 5356 0.972883 ATATCTTCCTCCAGCGAGCC 59.027 55.000 0.00 0.00 34.49 4.70
2161 5357 1.115930 TATCTTCCTCCAGCGAGCCC 61.116 60.000 0.00 0.00 34.49 5.19
2162 5358 4.168291 CTTCCTCCAGCGAGCCCC 62.168 72.222 0.00 0.00 34.49 5.80
2169 5365 4.821589 CAGCGAGCCCCCGTTCTC 62.822 72.222 0.00 0.00 0.00 2.87
2172 5368 3.839432 CGAGCCCCCGTTCTCCTC 61.839 72.222 0.00 0.00 0.00 3.71
2173 5369 3.471806 GAGCCCCCGTTCTCCTCC 61.472 72.222 0.00 0.00 0.00 4.30
2176 5372 4.416601 CCCCCGTTCTCCTCCCCT 62.417 72.222 0.00 0.00 0.00 4.79
2177 5373 2.694305 CCCCGTTCTCCTCCCCTA 59.306 66.667 0.00 0.00 0.00 3.53
2178 5374 1.761271 CCCCGTTCTCCTCCCCTAC 60.761 68.421 0.00 0.00 0.00 3.18
2179 5375 1.761271 CCCGTTCTCCTCCCCTACC 60.761 68.421 0.00 0.00 0.00 3.18
2180 5376 1.761271 CCGTTCTCCTCCCCTACCC 60.761 68.421 0.00 0.00 0.00 3.69
2181 5377 1.001248 CGTTCTCCTCCCCTACCCA 59.999 63.158 0.00 0.00 0.00 4.51
2182 5378 1.328430 CGTTCTCCTCCCCTACCCAC 61.328 65.000 0.00 0.00 0.00 4.61
2183 5379 0.981801 GTTCTCCTCCCCTACCCACC 60.982 65.000 0.00 0.00 0.00 4.61
2184 5380 2.444140 CTCCTCCCCTACCCACCG 60.444 72.222 0.00 0.00 0.00 4.94
2185 5381 2.948354 TCCTCCCCTACCCACCGA 60.948 66.667 0.00 0.00 0.00 4.69
2186 5382 2.444140 CCTCCCCTACCCACCGAG 60.444 72.222 0.00 0.00 0.00 4.63
2187 5383 3.155167 CTCCCCTACCCACCGAGC 61.155 72.222 0.00 0.00 0.00 5.03
2188 5384 3.976490 CTCCCCTACCCACCGAGCA 62.976 68.421 0.00 0.00 0.00 4.26
2189 5385 3.782443 CCCCTACCCACCGAGCAC 61.782 72.222 0.00 0.00 0.00 4.40
2190 5386 3.782443 CCCTACCCACCGAGCACC 61.782 72.222 0.00 0.00 0.00 5.01
2191 5387 3.000819 CCTACCCACCGAGCACCA 61.001 66.667 0.00 0.00 0.00 4.17
2192 5388 2.367202 CCTACCCACCGAGCACCAT 61.367 63.158 0.00 0.00 0.00 3.55
2193 5389 1.153369 CTACCCACCGAGCACCATG 60.153 63.158 0.00 0.00 0.00 3.66
2194 5390 2.593468 CTACCCACCGAGCACCATGG 62.593 65.000 11.19 11.19 0.00 3.66
2195 5391 4.033776 CCCACCGAGCACCATGGT 62.034 66.667 13.00 13.00 36.10 3.55
2204 5400 4.007457 CACCATGGTGCTCCCTTG 57.993 61.111 31.13 6.12 39.39 3.61
2205 5401 1.379916 CACCATGGTGCTCCCTTGA 59.620 57.895 31.13 0.00 40.10 3.02
2206 5402 0.251297 CACCATGGTGCTCCCTTGAA 60.251 55.000 31.13 0.00 40.10 2.69
2207 5403 0.038744 ACCATGGTGCTCCCTTGAAG 59.961 55.000 18.99 0.00 40.10 3.02
2208 5404 1.318158 CCATGGTGCTCCCTTGAAGC 61.318 60.000 2.57 0.00 40.10 3.86
2209 5405 1.377725 ATGGTGCTCCCTTGAAGCG 60.378 57.895 1.59 0.00 0.00 4.68
2210 5406 3.435186 GGTGCTCCCTTGAAGCGC 61.435 66.667 0.00 0.00 38.23 5.92
2211 5407 3.793144 GTGCTCCCTTGAAGCGCG 61.793 66.667 0.00 0.00 0.00 6.86
2217 5413 3.112075 CCTTGAAGCGCGCGAGAA 61.112 61.111 37.18 17.72 0.00 2.87
2218 5414 2.094724 CTTGAAGCGCGCGAGAAC 59.905 61.111 37.18 20.61 0.00 3.01
2219 5415 2.657757 CTTGAAGCGCGCGAGAACA 61.658 57.895 37.18 22.98 0.00 3.18
2220 5416 2.802346 CTTGAAGCGCGCGAGAACAC 62.802 60.000 37.18 15.10 0.00 3.32
2221 5417 4.470050 GAAGCGCGCGAGAACACG 62.470 66.667 37.18 5.48 0.00 4.49
2227 5423 3.164011 CGCGAGAACACGTCCGTC 61.164 66.667 0.00 0.00 35.59 4.79
2228 5424 2.804090 GCGAGAACACGTCCGTCC 60.804 66.667 0.00 0.00 35.59 4.79
2229 5425 2.952245 CGAGAACACGTCCGTCCT 59.048 61.111 0.00 0.00 0.00 3.85
2230 5426 1.154263 CGAGAACACGTCCGTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
2231 5427 1.848932 CGAGAACACGTCCGTCCTCA 61.849 60.000 11.38 0.00 0.00 3.86
2232 5428 0.109689 GAGAACACGTCCGTCCTCAG 60.110 60.000 0.00 0.00 0.00 3.35
2233 5429 0.536687 AGAACACGTCCGTCCTCAGA 60.537 55.000 0.00 0.00 0.00 3.27
2234 5430 0.109689 GAACACGTCCGTCCTCAGAG 60.110 60.000 0.00 0.00 0.00 3.35
2235 5431 2.143594 AACACGTCCGTCCTCAGAGC 62.144 60.000 0.00 0.00 0.00 4.09
2236 5432 2.282251 ACGTCCGTCCTCAGAGCA 60.282 61.111 0.00 0.00 0.00 4.26
2237 5433 1.901948 ACGTCCGTCCTCAGAGCAA 60.902 57.895 0.00 0.00 0.00 3.91
2238 5434 1.289066 CGTCCGTCCTCAGAGCAAA 59.711 57.895 0.00 0.00 0.00 3.68
2239 5435 0.734253 CGTCCGTCCTCAGAGCAAAG 60.734 60.000 0.00 0.00 0.00 2.77
2240 5436 1.016653 GTCCGTCCTCAGAGCAAAGC 61.017 60.000 0.00 0.00 0.00 3.51
2241 5437 1.188219 TCCGTCCTCAGAGCAAAGCT 61.188 55.000 0.00 0.00 43.88 3.74
2242 5438 0.321122 CCGTCCTCAGAGCAAAGCTT 60.321 55.000 0.00 0.00 39.88 3.74
2243 5439 1.517242 CGTCCTCAGAGCAAAGCTTT 58.483 50.000 5.69 5.69 39.88 3.51
2244 5440 1.196354 CGTCCTCAGAGCAAAGCTTTG 59.804 52.381 30.70 30.70 39.88 2.77
2256 5452 2.180017 GCTTTGCGAGCCATGGTG 59.820 61.111 14.67 4.98 46.01 4.17
2257 5453 2.629656 GCTTTGCGAGCCATGGTGT 61.630 57.895 14.67 0.12 46.01 4.16
2258 5454 1.503542 CTTTGCGAGCCATGGTGTC 59.496 57.895 14.67 9.80 0.00 3.67
2259 5455 2.244436 CTTTGCGAGCCATGGTGTCG 62.244 60.000 25.79 25.79 36.77 4.35
2260 5456 2.723586 TTTGCGAGCCATGGTGTCGA 62.724 55.000 31.15 18.53 35.70 4.20
2261 5457 3.188786 GCGAGCCATGGTGTCGAC 61.189 66.667 31.15 21.64 35.70 4.20
2262 5458 2.261361 CGAGCCATGGTGTCGACA 59.739 61.111 25.91 15.76 35.70 4.35
2263 5459 1.153568 CGAGCCATGGTGTCGACAT 60.154 57.895 25.91 2.90 35.70 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.903877 CTCGGCCTTCATGACCCAGT 61.904 60.000 0.00 0.00 0.00 4.00
31 32 1.153289 CTCGGCCTTCATGACCCAG 60.153 63.158 0.00 0.00 0.00 4.45
67 68 1.271871 TGCAACCATTCGGATCCACTT 60.272 47.619 13.41 0.00 35.59 3.16
75 76 0.609131 AGTCCCTTGCAACCATTCGG 60.609 55.000 0.00 0.00 38.77 4.30
76 77 2.107950 TAGTCCCTTGCAACCATTCG 57.892 50.000 0.00 0.00 0.00 3.34
90 91 3.031736 TCTCTGGGTGTGCTAATAGTCC 58.968 50.000 0.00 0.00 0.00 3.85
98 99 0.251209 TACGTCTCTCTGGGTGTGCT 60.251 55.000 0.00 0.00 0.00 4.40
107 108 4.519350 TCTCAACATTGTGTACGTCTCTCT 59.481 41.667 0.00 0.00 0.00 3.10
223 224 2.749621 CAAGGTCCACAAGAACATAGCC 59.250 50.000 0.00 0.00 33.03 3.93
253 258 5.659440 TGATTTTGGGTTCTCCTATTTGC 57.341 39.130 0.00 0.00 36.20 3.68
273 278 2.789213 TCCGCTCCATGTTTGAAATGA 58.211 42.857 0.00 0.00 0.00 2.57
275 280 4.269183 TGTATCCGCTCCATGTTTGAAAT 58.731 39.130 0.00 0.00 0.00 2.17
298 303 2.170607 CCTCATGGAACTTACGGTGGAT 59.829 50.000 0.00 0.00 34.57 3.41
325 330 4.940046 AGATGACATCTTGACCACACATTC 59.060 41.667 12.37 0.00 35.76 2.67
367 372 5.327616 TGCATGATGTGAAAATTAGGGTG 57.672 39.130 0.00 0.00 0.00 4.61
425 430 3.549299 CACCAATGCAGTCTTTGAGAC 57.451 47.619 0.00 0.00 45.38 3.36
449 454 3.328931 AGCCCTAATATGTGTCCCATCAG 59.671 47.826 0.00 0.00 34.86 2.90
450 455 3.326521 AGCCCTAATATGTGTCCCATCA 58.673 45.455 0.00 0.00 34.86 3.07
473 478 7.511959 ACTTTCAAAGGTCCTTCTGAAATAC 57.488 36.000 25.66 0.00 37.22 1.89
478 483 5.621193 CCTTACTTTCAAAGGTCCTTCTGA 58.379 41.667 4.10 8.29 38.98 3.27
491 496 9.667107 CTGTTCTTCCAATATACCTTACTTTCA 57.333 33.333 0.00 0.00 0.00 2.69
551 556 6.198650 CATAGGTGAAATGCATGTCAAAGA 57.801 37.500 21.24 9.42 0.00 2.52
636 641 1.303236 TGGGAATGTGGCCTTGTCG 60.303 57.895 3.32 0.00 0.00 4.35
694 699 7.040201 GCATGTGAATTGGAGGATATGTTACAT 60.040 37.037 2.58 2.58 0.00 2.29
700 705 5.243060 ACATGCATGTGAATTGGAGGATATG 59.757 40.000 30.92 0.23 40.03 1.78
842 898 1.888512 AGCGTTCTCCTTTGTACGGTA 59.111 47.619 0.00 0.00 42.10 4.02
891 947 2.095270 TACGGGAGTAGTTGGGGGA 58.905 57.895 0.00 0.00 46.17 4.81
926 982 2.826777 ATTGCGCTTGGAGGAGTGGG 62.827 60.000 9.73 0.00 0.00 4.61
970 1027 5.163513 CAAGGTTTTCCATTTCATCTTCCG 58.836 41.667 0.00 0.00 43.73 4.30
989 1046 6.212888 AGTATTTTGGCATCTTAAGCAAGG 57.787 37.500 0.00 0.00 32.22 3.61
1008 1065 9.770097 ATCATCTTTTGTGTATTGATCGAGTAT 57.230 29.630 0.00 0.00 0.00 2.12
1057 1115 4.030216 TCATGGAGGCAGACATAGTTGTA 58.970 43.478 0.00 0.00 35.79 2.41
1065 1123 0.325933 CCTTGTCATGGAGGCAGACA 59.674 55.000 0.00 0.00 40.24 3.41
1102 1160 1.741028 TCCAAATCCCTCTGACACCA 58.259 50.000 0.00 0.00 0.00 4.17
1108 1166 5.448654 TGGAACATAATCCAAATCCCTCTG 58.551 41.667 0.00 0.00 46.36 3.35
1149 1207 7.416664 GCATTTGGAGGAATAACATGCTTCTTA 60.417 37.037 0.00 0.00 34.10 2.10
1156 1214 5.217393 CGATGCATTTGGAGGAATAACATG 58.783 41.667 0.00 0.00 0.00 3.21
1199 1257 5.815581 ACAAATCCATGTTAGGAGCACTTA 58.184 37.500 0.00 0.00 41.90 2.24
1255 1313 6.474427 GCATGAACATGATTACTTCACCAATG 59.526 38.462 17.40 0.00 41.20 2.82
1256 1314 6.406177 GGCATGAACATGATTACTTCACCAAT 60.406 38.462 17.40 0.00 41.20 3.16
1280 1338 2.459555 ATTGGCCACCCATCTAAAGG 57.540 50.000 3.88 0.00 41.78 3.11
1310 1369 8.693542 ACAAAAGCTTCATTTGCATATAAGTC 57.306 30.769 0.00 0.00 40.58 3.01
1514 1577 2.295885 GCATGAAGTCCTGATTCTGGG 58.704 52.381 9.46 0.54 0.00 4.45
1523 1586 4.917906 ACTAGAAAAGGCATGAAGTCCT 57.082 40.909 0.00 0.00 0.00 3.85
1539 1602 5.215252 AGCTGTTAGCAAGTTGAACTAGA 57.785 39.130 7.16 0.00 45.56 2.43
1545 1608 3.578716 AGGACTAGCTGTTAGCAAGTTGA 59.421 43.478 7.16 0.00 45.56 3.18
1551 1614 5.477607 TGTAAAAGGACTAGCTGTTAGCA 57.522 39.130 0.00 0.00 45.56 3.49
1591 1654 7.225931 AGTTGCTTCGAATTTTAGTGTACAGAA 59.774 33.333 0.00 0.00 0.00 3.02
1606 1670 0.245539 CGGGGACTAGTTGCTTCGAA 59.754 55.000 0.00 0.00 0.00 3.71
1607 1671 0.896940 ACGGGGACTAGTTGCTTCGA 60.897 55.000 0.00 0.00 0.00 3.71
1608 1672 0.736325 CACGGGGACTAGTTGCTTCG 60.736 60.000 0.00 0.40 0.00 3.79
1609 1673 0.606604 TCACGGGGACTAGTTGCTTC 59.393 55.000 0.00 0.00 0.00 3.86
1610 1674 1.053424 TTCACGGGGACTAGTTGCTT 58.947 50.000 0.00 0.00 0.00 3.91
1611 1675 1.053424 TTTCACGGGGACTAGTTGCT 58.947 50.000 0.00 0.00 0.00 3.91
1612 1676 1.886886 TTTTCACGGGGACTAGTTGC 58.113 50.000 0.00 0.00 0.00 4.17
1634 1698 7.144234 ACATATGGGCTTAACTGGTGTAATA 57.856 36.000 7.80 0.00 0.00 0.98
1675 1741 8.966868 TGTTTTTCTATAGATAAAAGGCTTGGG 58.033 33.333 16.81 0.00 29.36 4.12
1680 1746 7.996385 TGGCTGTTTTTCTATAGATAAAAGGC 58.004 34.615 25.15 25.15 34.27 4.35
1691 1757 1.852633 GGGCCTGGCTGTTTTTCTAT 58.147 50.000 19.68 0.00 0.00 1.98
1693 1759 1.903404 CGGGCCTGGCTGTTTTTCT 60.903 57.895 19.68 0.00 0.00 2.52
1694 1760 1.901464 TCGGGCCTGGCTGTTTTTC 60.901 57.895 19.68 0.00 0.00 2.29
1730 1796 1.482593 GCTCAGCTAGAGTTTGGGCTA 59.517 52.381 12.71 0.00 46.47 3.93
1746 1812 2.460662 GAAGGCTGCTGACCTGCTCA 62.461 60.000 0.00 0.00 37.67 4.26
1754 1820 1.004560 CCGTTGAGAAGGCTGCTGA 60.005 57.895 0.00 0.00 0.00 4.26
1764 1830 0.400213 AGTGATTTGGCCCGTTGAGA 59.600 50.000 0.00 0.00 0.00 3.27
1769 1835 2.035626 CCCAGTGATTTGGCCCGT 59.964 61.111 0.00 0.00 36.88 5.28
1772 1838 1.467920 CTTCTCCCAGTGATTTGGCC 58.532 55.000 0.00 0.00 36.88 5.36
1773 1839 0.813821 GCTTCTCCCAGTGATTTGGC 59.186 55.000 0.00 0.00 36.88 4.52
1781 1847 2.028130 CTCATCGTAGCTTCTCCCAGT 58.972 52.381 0.00 0.00 0.00 4.00
1785 1851 0.318275 CCGCTCATCGTAGCTTCTCC 60.318 60.000 0.00 0.00 40.49 3.71
1822 5018 2.503356 AGCTATCTTCCAACTCCACCTG 59.497 50.000 0.00 0.00 0.00 4.00
1878 5074 1.272147 GGGCCAGTTTTGATCCTCTGT 60.272 52.381 4.39 0.00 0.00 3.41
1879 5075 1.005215 AGGGCCAGTTTTGATCCTCTG 59.995 52.381 6.18 0.00 0.00 3.35
1880 5076 1.005215 CAGGGCCAGTTTTGATCCTCT 59.995 52.381 6.18 0.00 0.00 3.69
1881 5077 1.004745 TCAGGGCCAGTTTTGATCCTC 59.995 52.381 6.18 0.00 0.00 3.71
1882 5078 1.075601 TCAGGGCCAGTTTTGATCCT 58.924 50.000 6.18 0.00 0.00 3.24
1884 5080 1.203287 GCTTCAGGGCCAGTTTTGATC 59.797 52.381 6.18 0.00 0.00 2.92
1885 5081 1.203100 AGCTTCAGGGCCAGTTTTGAT 60.203 47.619 6.18 0.00 0.00 2.57
1886 5082 0.185901 AGCTTCAGGGCCAGTTTTGA 59.814 50.000 6.18 0.00 0.00 2.69
1887 5083 1.043022 AAGCTTCAGGGCCAGTTTTG 58.957 50.000 6.18 0.00 0.00 2.44
1888 5084 1.043022 CAAGCTTCAGGGCCAGTTTT 58.957 50.000 6.18 0.00 0.00 2.43
1889 5085 0.185901 TCAAGCTTCAGGGCCAGTTT 59.814 50.000 6.18 0.00 0.00 2.66
1890 5086 0.538287 GTCAAGCTTCAGGGCCAGTT 60.538 55.000 6.18 0.00 0.00 3.16
1891 5087 1.073897 GTCAAGCTTCAGGGCCAGT 59.926 57.895 6.18 0.00 0.00 4.00
1892 5088 2.037136 CGTCAAGCTTCAGGGCCAG 61.037 63.158 6.18 0.00 0.00 4.85
1893 5089 2.032528 CGTCAAGCTTCAGGGCCA 59.967 61.111 6.18 0.00 0.00 5.36
1894 5090 0.889186 TTTCGTCAAGCTTCAGGGCC 60.889 55.000 0.00 0.00 0.00 5.80
1895 5091 0.238553 GTTTCGTCAAGCTTCAGGGC 59.761 55.000 0.00 0.00 0.00 5.19
1896 5092 1.884235 AGTTTCGTCAAGCTTCAGGG 58.116 50.000 0.00 0.00 0.00 4.45
1897 5093 4.452455 ACATAAGTTTCGTCAAGCTTCAGG 59.548 41.667 0.00 0.00 35.00 3.86
1898 5094 5.597813 ACATAAGTTTCGTCAAGCTTCAG 57.402 39.130 0.00 0.00 35.00 3.02
1899 5095 6.220930 ACTACATAAGTTTCGTCAAGCTTCA 58.779 36.000 0.00 0.00 35.00 3.02
1900 5096 6.707599 ACTACATAAGTTTCGTCAAGCTTC 57.292 37.500 0.00 0.00 35.00 3.86
1901 5097 8.656849 CAATACTACATAAGTTTCGTCAAGCTT 58.343 33.333 0.00 0.00 39.80 3.74
1902 5098 7.277981 CCAATACTACATAAGTTTCGTCAAGCT 59.722 37.037 0.00 0.00 39.80 3.74
1903 5099 7.064253 ACCAATACTACATAAGTTTCGTCAAGC 59.936 37.037 0.00 0.00 39.80 4.01
1904 5100 8.475331 ACCAATACTACATAAGTTTCGTCAAG 57.525 34.615 0.00 0.00 39.80 3.02
1905 5101 9.577110 CTACCAATACTACATAAGTTTCGTCAA 57.423 33.333 0.00 0.00 39.80 3.18
1906 5102 8.742777 ACTACCAATACTACATAAGTTTCGTCA 58.257 33.333 0.00 0.00 39.80 4.35
1907 5103 9.230932 GACTACCAATACTACATAAGTTTCGTC 57.769 37.037 0.00 0.00 39.80 4.20
1908 5104 8.193438 GGACTACCAATACTACATAAGTTTCGT 58.807 37.037 0.00 0.00 36.52 3.85
1909 5105 8.411683 AGGACTACCAATACTACATAAGTTTCG 58.588 37.037 0.00 0.00 37.92 3.46
1910 5106 9.530633 CAGGACTACCAATACTACATAAGTTTC 57.469 37.037 0.00 0.00 37.92 2.78
1911 5107 8.483758 CCAGGACTACCAATACTACATAAGTTT 58.516 37.037 0.00 0.00 37.92 2.66
1912 5108 7.418712 GCCAGGACTACCAATACTACATAAGTT 60.419 40.741 0.00 0.00 37.92 2.66
1913 5109 6.041751 GCCAGGACTACCAATACTACATAAGT 59.958 42.308 0.00 0.00 39.40 2.24
1914 5110 6.267928 AGCCAGGACTACCAATACTACATAAG 59.732 42.308 0.00 0.00 38.94 1.73
1915 5111 6.141083 AGCCAGGACTACCAATACTACATAA 58.859 40.000 0.00 0.00 38.94 1.90
1916 5112 5.712752 AGCCAGGACTACCAATACTACATA 58.287 41.667 0.00 0.00 38.94 2.29
1917 5113 4.557705 AGCCAGGACTACCAATACTACAT 58.442 43.478 0.00 0.00 38.94 2.29
1918 5114 3.958798 GAGCCAGGACTACCAATACTACA 59.041 47.826 0.00 0.00 38.94 2.74
1919 5115 3.958798 TGAGCCAGGACTACCAATACTAC 59.041 47.826 0.00 0.00 38.94 2.73
1920 5116 4.259933 TGAGCCAGGACTACCAATACTA 57.740 45.455 0.00 0.00 38.94 1.82
1921 5117 3.116096 TGAGCCAGGACTACCAATACT 57.884 47.619 0.00 0.00 38.94 2.12
1922 5118 3.643792 AGATGAGCCAGGACTACCAATAC 59.356 47.826 0.00 0.00 38.94 1.89
1923 5119 3.643320 CAGATGAGCCAGGACTACCAATA 59.357 47.826 0.00 0.00 38.94 1.90
1924 5120 2.437281 CAGATGAGCCAGGACTACCAAT 59.563 50.000 0.00 0.00 38.94 3.16
1925 5121 1.833630 CAGATGAGCCAGGACTACCAA 59.166 52.381 0.00 0.00 38.94 3.67
1926 5122 1.489481 CAGATGAGCCAGGACTACCA 58.511 55.000 0.00 0.00 38.94 3.25
1927 5123 0.105778 GCAGATGAGCCAGGACTACC 59.894 60.000 0.00 0.00 0.00 3.18
1928 5124 1.068434 GAGCAGATGAGCCAGGACTAC 59.932 57.143 0.00 0.00 34.23 2.73
1929 5125 1.407936 GAGCAGATGAGCCAGGACTA 58.592 55.000 0.00 0.00 34.23 2.59
1930 5126 1.336632 GGAGCAGATGAGCCAGGACT 61.337 60.000 0.00 0.00 34.23 3.85
1931 5127 1.145819 GGAGCAGATGAGCCAGGAC 59.854 63.158 0.00 0.00 34.23 3.85
1932 5128 2.068821 GGGAGCAGATGAGCCAGGA 61.069 63.158 0.00 0.00 34.23 3.86
1933 5129 2.509916 GGGAGCAGATGAGCCAGG 59.490 66.667 0.00 0.00 34.23 4.45
1934 5130 1.756408 ATCGGGAGCAGATGAGCCAG 61.756 60.000 0.00 0.00 34.23 4.85
1935 5131 1.763655 ATCGGGAGCAGATGAGCCA 60.764 57.895 0.00 0.00 34.23 4.75
1936 5132 1.301558 CATCGGGAGCAGATGAGCC 60.302 63.158 0.28 0.00 46.09 4.70
1937 5133 1.744639 TCATCGGGAGCAGATGAGC 59.255 57.895 4.95 0.00 46.52 4.26
1940 5136 2.598045 CGTTCATCGGGAGCAGATG 58.402 57.895 0.17 0.17 44.95 2.90
1950 5146 7.589954 AGTTTTCTTTGAATTAACCGTTCATCG 59.410 33.333 0.00 0.00 35.68 3.84
1951 5147 8.797266 AGTTTTCTTTGAATTAACCGTTCATC 57.203 30.769 0.00 0.00 35.68 2.92
1955 5151 9.857957 TGTTTAGTTTTCTTTGAATTAACCGTT 57.142 25.926 0.00 0.00 0.00 4.44
1956 5152 9.857957 TTGTTTAGTTTTCTTTGAATTAACCGT 57.142 25.926 0.00 0.00 0.00 4.83
1992 5188 9.850628 CATCATCGATGCCAAATATTTTTAGAT 57.149 29.630 20.81 0.04 33.17 1.98
2015 5211 1.400846 CTCATTGCACACCTGAGCATC 59.599 52.381 0.00 0.00 41.03 3.91
2016 5212 1.460504 CTCATTGCACACCTGAGCAT 58.539 50.000 0.00 0.00 41.03 3.79
2017 5213 0.607217 CCTCATTGCACACCTGAGCA 60.607 55.000 8.53 0.00 39.76 4.26
2018 5214 1.310933 CCCTCATTGCACACCTGAGC 61.311 60.000 8.53 0.00 36.02 4.26
2019 5215 0.037303 ACCCTCATTGCACACCTGAG 59.963 55.000 7.47 7.47 36.89 3.35
2020 5216 1.003118 GTACCCTCATTGCACACCTGA 59.997 52.381 0.00 0.00 0.00 3.86
2021 5217 1.271325 TGTACCCTCATTGCACACCTG 60.271 52.381 0.00 0.00 0.00 4.00
2022 5218 1.064003 TGTACCCTCATTGCACACCT 58.936 50.000 0.00 0.00 0.00 4.00
2023 5219 1.165270 GTGTACCCTCATTGCACACC 58.835 55.000 0.00 0.00 34.74 4.16
2024 5220 1.890876 TGTGTACCCTCATTGCACAC 58.109 50.000 0.00 0.00 39.89 3.82
2025 5221 2.877097 ATGTGTACCCTCATTGCACA 57.123 45.000 0.00 0.00 42.99 4.57
2026 5222 4.485163 GAAAATGTGTACCCTCATTGCAC 58.515 43.478 8.18 0.00 35.54 4.57
2027 5223 3.190327 CGAAAATGTGTACCCTCATTGCA 59.810 43.478 8.18 0.00 35.54 4.08
2028 5224 3.190535 ACGAAAATGTGTACCCTCATTGC 59.809 43.478 8.18 4.75 35.54 3.56
2029 5225 5.153513 CAACGAAAATGTGTACCCTCATTG 58.846 41.667 8.18 1.69 35.54 2.82
2030 5226 4.825085 ACAACGAAAATGTGTACCCTCATT 59.175 37.500 0.00 0.00 36.59 2.57
2031 5227 4.215399 CACAACGAAAATGTGTACCCTCAT 59.785 41.667 0.00 0.00 42.48 2.90
2032 5228 3.562141 CACAACGAAAATGTGTACCCTCA 59.438 43.478 0.00 0.00 42.48 3.86
2033 5229 4.141855 CACAACGAAAATGTGTACCCTC 57.858 45.455 0.00 0.00 42.48 4.30
2041 5237 4.442375 TGTCCAAACACAACGAAAATGT 57.558 36.364 0.00 0.00 0.00 2.71
2042 5238 5.331458 CGAATGTCCAAACACAACGAAAATG 60.331 40.000 0.00 0.00 38.48 2.32
2043 5239 4.737765 CGAATGTCCAAACACAACGAAAAT 59.262 37.500 0.00 0.00 38.48 1.82
2044 5240 4.099120 CGAATGTCCAAACACAACGAAAA 58.901 39.130 0.00 0.00 38.48 2.29
2045 5241 3.374367 TCGAATGTCCAAACACAACGAAA 59.626 39.130 0.00 0.00 38.48 3.46
2046 5242 2.937149 TCGAATGTCCAAACACAACGAA 59.063 40.909 0.00 0.00 38.48 3.85
2047 5243 2.542178 CTCGAATGTCCAAACACAACGA 59.458 45.455 0.00 0.00 38.48 3.85
2048 5244 2.349438 CCTCGAATGTCCAAACACAACG 60.349 50.000 0.00 0.00 38.48 4.10
2049 5245 2.875933 TCCTCGAATGTCCAAACACAAC 59.124 45.455 0.00 0.00 38.48 3.32
2050 5246 2.875933 GTCCTCGAATGTCCAAACACAA 59.124 45.455 0.00 0.00 38.48 3.33
2051 5247 2.489971 GTCCTCGAATGTCCAAACACA 58.510 47.619 0.00 0.00 38.48 3.72
2052 5248 1.804748 GGTCCTCGAATGTCCAAACAC 59.195 52.381 0.00 0.00 38.48 3.32
2053 5249 1.697432 AGGTCCTCGAATGTCCAAACA 59.303 47.619 0.00 0.00 40.38 2.83
2054 5250 2.474410 AGGTCCTCGAATGTCCAAAC 57.526 50.000 0.00 0.00 0.00 2.93
2055 5251 3.502123 AAAGGTCCTCGAATGTCCAAA 57.498 42.857 0.00 0.00 0.00 3.28
2056 5252 3.055385 CCTAAAGGTCCTCGAATGTCCAA 60.055 47.826 0.00 0.00 0.00 3.53
2057 5253 2.500098 CCTAAAGGTCCTCGAATGTCCA 59.500 50.000 0.00 0.00 0.00 4.02
2058 5254 2.764572 TCCTAAAGGTCCTCGAATGTCC 59.235 50.000 0.00 0.00 36.34 4.02
2059 5255 4.467198 TTCCTAAAGGTCCTCGAATGTC 57.533 45.455 0.00 0.00 36.34 3.06
2060 5256 4.903045 TTTCCTAAAGGTCCTCGAATGT 57.097 40.909 0.00 0.00 36.34 2.71
2061 5257 7.224949 GTCTATTTTCCTAAAGGTCCTCGAATG 59.775 40.741 0.00 0.00 36.34 2.67
2062 5258 7.273712 GTCTATTTTCCTAAAGGTCCTCGAAT 58.726 38.462 0.00 0.00 36.34 3.34
2063 5259 6.626623 CGTCTATTTTCCTAAAGGTCCTCGAA 60.627 42.308 0.00 0.00 36.34 3.71
2064 5260 5.163581 CGTCTATTTTCCTAAAGGTCCTCGA 60.164 44.000 0.00 0.00 36.34 4.04
2065 5261 5.041940 CGTCTATTTTCCTAAAGGTCCTCG 58.958 45.833 0.00 0.00 36.34 4.63
2066 5262 6.127394 ACTCGTCTATTTTCCTAAAGGTCCTC 60.127 42.308 0.00 0.00 36.34 3.71
2067 5263 5.720520 ACTCGTCTATTTTCCTAAAGGTCCT 59.279 40.000 0.00 0.00 36.34 3.85
2068 5264 5.975282 ACTCGTCTATTTTCCTAAAGGTCC 58.025 41.667 0.00 0.00 36.34 4.46
2069 5265 7.590689 CGATACTCGTCTATTTTCCTAAAGGTC 59.409 40.741 0.00 0.00 34.72 3.85
2070 5266 7.284034 TCGATACTCGTCTATTTTCCTAAAGGT 59.716 37.037 0.00 0.00 41.35 3.50
2071 5267 7.590689 GTCGATACTCGTCTATTTTCCTAAAGG 59.409 40.741 0.00 0.00 41.35 3.11
2072 5268 7.590689 GGTCGATACTCGTCTATTTTCCTAAAG 59.409 40.741 0.00 0.00 41.35 1.85
2073 5269 7.067372 TGGTCGATACTCGTCTATTTTCCTAAA 59.933 37.037 0.00 0.00 41.35 1.85
2074 5270 6.543465 TGGTCGATACTCGTCTATTTTCCTAA 59.457 38.462 0.00 0.00 41.35 2.69
2075 5271 6.057533 TGGTCGATACTCGTCTATTTTCCTA 58.942 40.000 0.00 0.00 41.35 2.94
2076 5272 4.885907 TGGTCGATACTCGTCTATTTTCCT 59.114 41.667 0.00 0.00 41.35 3.36
2077 5273 5.179045 TGGTCGATACTCGTCTATTTTCC 57.821 43.478 0.00 0.00 41.35 3.13
2078 5274 6.207213 ACATGGTCGATACTCGTCTATTTTC 58.793 40.000 0.00 0.00 41.35 2.29
2079 5275 6.039493 AGACATGGTCGATACTCGTCTATTTT 59.961 38.462 0.00 0.00 41.35 1.82
2080 5276 5.531659 AGACATGGTCGATACTCGTCTATTT 59.468 40.000 0.00 0.00 41.35 1.40
2081 5277 5.064558 AGACATGGTCGATACTCGTCTATT 58.935 41.667 0.00 0.00 41.35 1.73
2082 5278 4.643463 AGACATGGTCGATACTCGTCTAT 58.357 43.478 0.00 0.00 41.35 1.98
2083 5279 4.069300 AGACATGGTCGATACTCGTCTA 57.931 45.455 0.00 0.00 41.35 2.59
2084 5280 2.920524 AGACATGGTCGATACTCGTCT 58.079 47.619 0.00 0.00 41.35 4.18
2085 5281 3.312973 AGAAGACATGGTCGATACTCGTC 59.687 47.826 0.00 0.00 41.35 4.20
2086 5282 3.280295 AGAAGACATGGTCGATACTCGT 58.720 45.455 0.00 0.00 41.35 4.18
2087 5283 3.972950 AGAAGACATGGTCGATACTCG 57.027 47.619 0.00 0.00 42.10 4.18
2088 5284 4.339814 AGGAAGAAGACATGGTCGATACTC 59.660 45.833 0.00 0.00 37.67 2.59
2089 5285 4.282496 AGGAAGAAGACATGGTCGATACT 58.718 43.478 0.00 0.00 37.67 2.12
2090 5286 4.098044 TGAGGAAGAAGACATGGTCGATAC 59.902 45.833 0.00 0.00 37.67 2.24
2091 5287 4.278310 TGAGGAAGAAGACATGGTCGATA 58.722 43.478 0.00 0.00 37.67 2.92
2092 5288 3.099905 TGAGGAAGAAGACATGGTCGAT 58.900 45.455 0.00 0.00 37.67 3.59
2093 5289 2.525368 TGAGGAAGAAGACATGGTCGA 58.475 47.619 0.00 0.00 37.67 4.20
2094 5290 3.319137 TTGAGGAAGAAGACATGGTCG 57.681 47.619 0.00 0.00 37.67 4.79
2095 5291 4.637977 GGAATTGAGGAAGAAGACATGGTC 59.362 45.833 0.00 0.00 0.00 4.02
2096 5292 4.593956 GGAATTGAGGAAGAAGACATGGT 58.406 43.478 0.00 0.00 0.00 3.55
2097 5293 3.624861 CGGAATTGAGGAAGAAGACATGG 59.375 47.826 0.00 0.00 0.00 3.66
2098 5294 3.624861 CCGGAATTGAGGAAGAAGACATG 59.375 47.826 0.00 0.00 0.00 3.21
2099 5295 3.878778 CCGGAATTGAGGAAGAAGACAT 58.121 45.455 0.00 0.00 0.00 3.06
2100 5296 2.615493 GCCGGAATTGAGGAAGAAGACA 60.615 50.000 5.05 0.00 0.00 3.41
2101 5297 2.010497 GCCGGAATTGAGGAAGAAGAC 58.990 52.381 5.05 0.00 0.00 3.01
2102 5298 1.628340 TGCCGGAATTGAGGAAGAAGA 59.372 47.619 5.05 0.00 0.00 2.87
2103 5299 2.113860 TGCCGGAATTGAGGAAGAAG 57.886 50.000 5.05 0.00 0.00 2.85
2104 5300 2.643551 GATGCCGGAATTGAGGAAGAA 58.356 47.619 5.05 0.00 0.00 2.52
2105 5301 1.473257 CGATGCCGGAATTGAGGAAGA 60.473 52.381 5.05 0.00 0.00 2.87
2106 5302 0.940126 CGATGCCGGAATTGAGGAAG 59.060 55.000 5.05 0.00 0.00 3.46
2107 5303 0.539518 TCGATGCCGGAATTGAGGAA 59.460 50.000 8.48 0.00 36.24 3.36
2108 5304 0.179084 GTCGATGCCGGAATTGAGGA 60.179 55.000 13.26 0.00 36.24 3.71
2109 5305 1.160329 GGTCGATGCCGGAATTGAGG 61.160 60.000 13.26 0.00 36.24 3.86
2110 5306 2.311294 GGTCGATGCCGGAATTGAG 58.689 57.895 13.26 0.00 36.24 3.02
2111 5307 4.532490 GGTCGATGCCGGAATTGA 57.468 55.556 8.48 8.48 36.24 2.57
2121 5317 3.958147 AAGGTGCCAGCGGTCGATG 62.958 63.158 1.32 1.32 0.00 3.84
2122 5318 3.706373 AAGGTGCCAGCGGTCGAT 61.706 61.111 0.00 0.00 0.00 3.59
2123 5319 4.680237 CAAGGTGCCAGCGGTCGA 62.680 66.667 0.00 0.00 0.00 4.20
2124 5320 2.572095 TATCAAGGTGCCAGCGGTCG 62.572 60.000 0.00 0.00 0.00 4.79
2125 5321 0.179045 ATATCAAGGTGCCAGCGGTC 60.179 55.000 0.00 0.00 0.00 4.79
2126 5322 0.179045 GATATCAAGGTGCCAGCGGT 60.179 55.000 0.00 0.00 0.00 5.68
2127 5323 0.107456 AGATATCAAGGTGCCAGCGG 59.893 55.000 5.32 0.00 0.00 5.52
2128 5324 1.869767 GAAGATATCAAGGTGCCAGCG 59.130 52.381 5.32 0.00 0.00 5.18
2129 5325 2.158696 AGGAAGATATCAAGGTGCCAGC 60.159 50.000 5.32 0.00 0.00 4.85
2130 5326 3.495806 GGAGGAAGATATCAAGGTGCCAG 60.496 52.174 5.32 0.00 0.00 4.85
2131 5327 2.439507 GGAGGAAGATATCAAGGTGCCA 59.560 50.000 5.32 0.00 0.00 4.92
2132 5328 2.439507 TGGAGGAAGATATCAAGGTGCC 59.560 50.000 5.32 0.00 0.00 5.01
2133 5329 3.737850 CTGGAGGAAGATATCAAGGTGC 58.262 50.000 5.32 0.00 0.00 5.01
2134 5330 3.737850 GCTGGAGGAAGATATCAAGGTG 58.262 50.000 5.32 0.00 0.00 4.00
2135 5331 2.366916 CGCTGGAGGAAGATATCAAGGT 59.633 50.000 5.32 0.00 0.00 3.50
2136 5332 2.630098 TCGCTGGAGGAAGATATCAAGG 59.370 50.000 5.32 0.00 0.00 3.61
2137 5333 3.860378 GCTCGCTGGAGGAAGATATCAAG 60.860 52.174 5.32 0.00 40.80 3.02
2138 5334 2.036475 GCTCGCTGGAGGAAGATATCAA 59.964 50.000 5.32 0.00 40.80 2.57
2139 5335 1.615883 GCTCGCTGGAGGAAGATATCA 59.384 52.381 5.32 0.00 40.80 2.15
2140 5336 1.067213 GGCTCGCTGGAGGAAGATATC 60.067 57.143 0.00 0.00 40.80 1.63
2141 5337 0.972883 GGCTCGCTGGAGGAAGATAT 59.027 55.000 0.00 0.00 40.80 1.63
2142 5338 1.115930 GGGCTCGCTGGAGGAAGATA 61.116 60.000 0.00 0.00 40.80 1.98
2143 5339 2.439104 GGGCTCGCTGGAGGAAGAT 61.439 63.158 0.00 0.00 40.80 2.40
2144 5340 3.077556 GGGCTCGCTGGAGGAAGA 61.078 66.667 0.00 0.00 40.80 2.87
2145 5341 4.168291 GGGGCTCGCTGGAGGAAG 62.168 72.222 0.00 0.00 40.80 3.46
2152 5348 4.821589 GAGAACGGGGGCTCGCTG 62.822 72.222 0.00 0.00 0.00 5.18
2155 5351 3.839432 GAGGAGAACGGGGGCTCG 61.839 72.222 0.00 0.00 31.95 5.03
2156 5352 3.471806 GGAGGAGAACGGGGGCTC 61.472 72.222 0.00 0.00 0.00 4.70
2159 5355 3.017896 TAGGGGAGGAGAACGGGGG 62.018 68.421 0.00 0.00 0.00 5.40
2160 5356 1.761271 GTAGGGGAGGAGAACGGGG 60.761 68.421 0.00 0.00 0.00 5.73
2161 5357 1.761271 GGTAGGGGAGGAGAACGGG 60.761 68.421 0.00 0.00 0.00 5.28
2162 5358 1.761271 GGGTAGGGGAGGAGAACGG 60.761 68.421 0.00 0.00 0.00 4.44
2163 5359 1.001248 TGGGTAGGGGAGGAGAACG 59.999 63.158 0.00 0.00 0.00 3.95
2164 5360 0.981801 GGTGGGTAGGGGAGGAGAAC 60.982 65.000 0.00 0.00 0.00 3.01
2165 5361 1.394963 GGTGGGTAGGGGAGGAGAA 59.605 63.158 0.00 0.00 0.00 2.87
2166 5362 3.005148 CGGTGGGTAGGGGAGGAGA 62.005 68.421 0.00 0.00 0.00 3.71
2167 5363 2.444140 CGGTGGGTAGGGGAGGAG 60.444 72.222 0.00 0.00 0.00 3.69
2168 5364 2.948354 TCGGTGGGTAGGGGAGGA 60.948 66.667 0.00 0.00 0.00 3.71
2169 5365 2.444140 CTCGGTGGGTAGGGGAGG 60.444 72.222 0.00 0.00 0.00 4.30
2170 5366 3.155167 GCTCGGTGGGTAGGGGAG 61.155 72.222 0.00 0.00 0.00 4.30
2171 5367 4.000620 TGCTCGGTGGGTAGGGGA 62.001 66.667 0.00 0.00 0.00 4.81
2172 5368 3.782443 GTGCTCGGTGGGTAGGGG 61.782 72.222 0.00 0.00 0.00 4.79
2173 5369 3.782443 GGTGCTCGGTGGGTAGGG 61.782 72.222 0.00 0.00 0.00 3.53
2174 5370 2.367202 ATGGTGCTCGGTGGGTAGG 61.367 63.158 0.00 0.00 0.00 3.18
2175 5371 1.153369 CATGGTGCTCGGTGGGTAG 60.153 63.158 0.00 0.00 0.00 3.18
2176 5372 2.665089 CCATGGTGCTCGGTGGGTA 61.665 63.158 2.57 0.00 0.00 3.69
2177 5373 4.033776 CCATGGTGCTCGGTGGGT 62.034 66.667 2.57 0.00 0.00 4.51
2178 5374 4.033776 ACCATGGTGCTCGGTGGG 62.034 66.667 18.99 0.00 36.05 4.61
2179 5375 2.747460 CACCATGGTGCTCGGTGG 60.747 66.667 31.13 6.05 45.32 4.61
2188 5384 0.038744 CTTCAAGGGAGCACCATGGT 59.961 55.000 13.00 13.00 43.89 3.55
2189 5385 1.318158 GCTTCAAGGGAGCACCATGG 61.318 60.000 11.19 11.19 43.89 3.66
2190 5386 1.651240 CGCTTCAAGGGAGCACCATG 61.651 60.000 1.58 0.49 43.89 3.66
2191 5387 1.377725 CGCTTCAAGGGAGCACCAT 60.378 57.895 1.58 0.00 43.89 3.55
2192 5388 2.032528 CGCTTCAAGGGAGCACCA 59.967 61.111 1.58 0.00 43.89 4.17
2193 5389 3.435186 GCGCTTCAAGGGAGCACC 61.435 66.667 5.47 0.00 40.67 5.01
2194 5390 3.793144 CGCGCTTCAAGGGAGCAC 61.793 66.667 5.47 0.00 0.00 4.40
2200 5396 3.112075 TTCTCGCGCGCTTCAAGG 61.112 61.111 30.48 12.65 0.00 3.61
2201 5397 2.094724 GTTCTCGCGCGCTTCAAG 59.905 61.111 30.48 17.48 0.00 3.02
2202 5398 2.660224 TGTTCTCGCGCGCTTCAA 60.660 55.556 30.48 15.21 0.00 2.69
2203 5399 3.403057 GTGTTCTCGCGCGCTTCA 61.403 61.111 30.48 17.83 0.00 3.02
2204 5400 4.470050 CGTGTTCTCGCGCGCTTC 62.470 66.667 30.48 15.37 40.56 3.86
2211 5407 2.804090 GGACGGACGTGTTCTCGC 60.804 66.667 0.53 0.00 0.00 5.03
2212 5408 1.154263 GAGGACGGACGTGTTCTCG 60.154 63.158 0.53 0.00 0.00 4.04
2213 5409 0.109689 CTGAGGACGGACGTGTTCTC 60.110 60.000 0.53 7.27 0.00 2.87
2214 5410 0.536687 TCTGAGGACGGACGTGTTCT 60.537 55.000 0.53 0.00 0.00 3.01
2215 5411 0.109689 CTCTGAGGACGGACGTGTTC 60.110 60.000 0.53 0.20 0.00 3.18
2216 5412 1.957562 CTCTGAGGACGGACGTGTT 59.042 57.895 0.53 0.00 0.00 3.32
2217 5413 2.627737 GCTCTGAGGACGGACGTGT 61.628 63.158 0.53 0.00 0.00 4.49
2218 5414 2.142357 TTGCTCTGAGGACGGACGTG 62.142 60.000 0.53 0.00 0.00 4.49
2219 5415 1.461091 TTTGCTCTGAGGACGGACGT 61.461 55.000 6.83 0.00 0.00 4.34
2220 5416 0.734253 CTTTGCTCTGAGGACGGACG 60.734 60.000 6.83 0.00 0.00 4.79
2221 5417 1.016653 GCTTTGCTCTGAGGACGGAC 61.017 60.000 6.83 0.00 0.00 4.79
2222 5418 1.188219 AGCTTTGCTCTGAGGACGGA 61.188 55.000 6.83 0.00 30.62 4.69
2223 5419 0.321122 AAGCTTTGCTCTGAGGACGG 60.321 55.000 6.83 0.32 38.25 4.79
2224 5420 1.196354 CAAAGCTTTGCTCTGAGGACG 59.804 52.381 25.26 0.00 38.25 4.79
2225 5421 2.985406 CAAAGCTTTGCTCTGAGGAC 57.015 50.000 25.26 0.00 38.25 3.85
2240 5436 1.503542 GACACCATGGCTCGCAAAG 59.496 57.895 13.04 0.00 0.00 2.77
2241 5437 2.324330 CGACACCATGGCTCGCAAA 61.324 57.895 13.04 0.00 0.00 3.68
2242 5438 2.741985 CGACACCATGGCTCGCAA 60.742 61.111 13.04 0.00 0.00 4.85
2243 5439 3.690280 TCGACACCATGGCTCGCA 61.690 61.111 22.13 11.84 0.00 5.10
2244 5440 3.188786 GTCGACACCATGGCTCGC 61.189 66.667 22.13 15.36 0.00 5.03
2245 5441 1.153568 ATGTCGACACCATGGCTCG 60.154 57.895 22.71 21.29 0.00 5.03
2246 5442 4.941609 ATGTCGACACCATGGCTC 57.058 55.556 22.71 5.75 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.