Multiple sequence alignment - TraesCS2B01G387600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G387600 chr2B 100.000 3235 0 0 1 3235 550718000 550721234 0.000000e+00 5975
1 TraesCS2B01G387600 chr2B 79.209 1467 120 75 1716 3060 550858107 550859510 0.000000e+00 848
2 TraesCS2B01G387600 chr2B 84.346 856 90 20 732 1577 550856813 550857634 0.000000e+00 798
3 TraesCS2B01G387600 chr2B 87.740 677 70 3 732 1408 550995873 550996536 0.000000e+00 778
4 TraesCS2B01G387600 chr2B 81.056 966 94 44 2114 3019 550997277 550998213 0.000000e+00 688
5 TraesCS2B01G387600 chr2B 83.022 695 55 17 2574 3232 550512405 550513072 3.620000e-159 571
6 TraesCS2B01G387600 chr2B 88.248 451 31 6 2139 2570 550511925 550512372 1.330000e-143 520
7 TraesCS2B01G387600 chr2B 85.950 484 40 15 1401 1865 550996573 550997047 2.900000e-135 492
8 TraesCS2B01G387600 chr2B 85.659 258 31 5 1611 1864 550511374 550511629 1.910000e-67 267
9 TraesCS2B01G387600 chr2B 90.291 103 5 4 1401 1500 550511060 550511160 2.620000e-26 130
10 TraesCS2B01G387600 chr2D 89.258 1266 86 16 1991 3231 471450596 471451836 0.000000e+00 1539
11 TraesCS2B01G387600 chr2D 93.103 667 40 1 713 1379 471448189 471448849 0.000000e+00 972
12 TraesCS2B01G387600 chr2D 86.657 682 72 9 732 1407 471895538 471896206 0.000000e+00 737
13 TraesCS2B01G387600 chr2D 85.331 634 65 13 739 1368 471371484 471372093 5.890000e-177 630
14 TraesCS2B01G387600 chr2D 84.088 685 53 16 2572 3227 471373469 471374126 7.670000e-171 610
15 TraesCS2B01G387600 chr2D 89.462 465 37 9 2113 2570 471372979 471373438 7.780000e-161 577
16 TraesCS2B01G387600 chr2D 92.697 356 12 6 1527 1873 471450224 471450574 4.820000e-138 501
17 TraesCS2B01G387600 chr2D 84.390 410 29 11 2106 2485 471896482 471896886 1.420000e-98 370
18 TraesCS2B01G387600 chr2D 79.588 485 66 27 1401 1861 471372266 471372741 1.870000e-82 316
19 TraesCS2B01G387600 chr2D 93.210 162 11 0 2572 2733 471896915 471897076 4.170000e-59 239
20 TraesCS2B01G387600 chr2D 96.528 144 3 2 1387 1529 471449934 471450076 1.500000e-58 237
21 TraesCS2B01G387600 chr2D 85.821 134 10 2 1401 1532 471896244 471896370 2.020000e-27 134
22 TraesCS2B01G387600 chr2A 87.997 1308 91 27 1703 2992 613174778 613176037 0.000000e+00 1485
23 TraesCS2B01G387600 chr2A 91.593 1023 55 13 713 1707 613173571 613174590 0.000000e+00 1384
24 TraesCS2B01G387600 chr2A 83.779 1048 111 38 739 1757 613036788 613037805 0.000000e+00 939
25 TraesCS2B01G387600 chr2A 83.591 969 77 35 2111 3038 613274471 613275398 0.000000e+00 833
26 TraesCS2B01G387600 chr2A 85.736 666 75 12 744 1408 613273022 613273668 0.000000e+00 686
27 TraesCS2B01G387600 chr2A 85.224 670 58 16 2572 3221 613038635 613039283 0.000000e+00 651
28 TraesCS2B01G387600 chr2A 85.472 530 47 19 1996 2505 613038038 613038557 2.860000e-145 525
29 TraesCS2B01G387600 chr2A 82.090 402 41 14 2840 3221 613043847 613043457 6.740000e-82 315
30 TraesCS2B01G387600 chr2A 87.500 272 15 5 1596 1864 613273974 613274229 2.440000e-76 296
31 TraesCS2B01G387600 chr2A 84.711 242 19 10 2994 3232 613176141 613176367 3.250000e-55 226
32 TraesCS2B01G387600 chr2A 84.444 135 12 2 1401 1533 613273706 613273833 1.220000e-24 124
33 TraesCS2B01G387600 chr5D 93.194 720 44 5 1 716 232839128 232838410 0.000000e+00 1053
34 TraesCS2B01G387600 chr5D 92.039 716 50 7 1 711 335882303 335881590 0.000000e+00 1000
35 TraesCS2B01G387600 chr3B 92.717 714 48 4 1 710 191157708 191156995 0.000000e+00 1027
36 TraesCS2B01G387600 chr3B 92.243 709 50 4 4 709 29577716 29577010 0.000000e+00 1000
37 TraesCS2B01G387600 chr3B 85.983 692 92 3 719 1408 739694480 739693792 0.000000e+00 736
38 TraesCS2B01G387600 chr1B 92.490 719 43 6 1 710 17634264 17633548 0.000000e+00 1018
39 TraesCS2B01G387600 chr1B 92.028 715 52 5 1 710 455164772 455164058 0.000000e+00 1000
40 TraesCS2B01G387600 chr6B 92.179 716 51 4 1 711 657170988 657170273 0.000000e+00 1007
41 TraesCS2B01G387600 chr4B 91.911 717 54 4 1 713 510875132 510875848 0.000000e+00 1000
42 TraesCS2B01G387600 chr3D 91.667 720 55 5 1 717 565792559 565791842 0.000000e+00 992


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G387600 chr2B 550718000 550721234 3234 False 5975.000000 5975 100.000000 1 3235 1 chr2B.!!$F1 3234
1 TraesCS2B01G387600 chr2B 550856813 550859510 2697 False 823.000000 848 81.777500 732 3060 2 chr2B.!!$F3 2328
2 TraesCS2B01G387600 chr2B 550995873 550998213 2340 False 652.666667 778 84.915333 732 3019 3 chr2B.!!$F4 2287
3 TraesCS2B01G387600 chr2B 550511060 550513072 2012 False 372.000000 571 86.805000 1401 3232 4 chr2B.!!$F2 1831
4 TraesCS2B01G387600 chr2D 471448189 471451836 3647 False 812.250000 1539 92.896500 713 3231 4 chr2D.!!$F2 2518
5 TraesCS2B01G387600 chr2D 471371484 471374126 2642 False 533.250000 630 84.617250 739 3227 4 chr2D.!!$F1 2488
6 TraesCS2B01G387600 chr2D 471895538 471897076 1538 False 370.000000 737 87.519500 732 2733 4 chr2D.!!$F3 2001
7 TraesCS2B01G387600 chr2A 613173571 613176367 2796 False 1031.666667 1485 88.100333 713 3232 3 chr2A.!!$F2 2519
8 TraesCS2B01G387600 chr2A 613036788 613039283 2495 False 705.000000 939 84.825000 739 3221 3 chr2A.!!$F1 2482
9 TraesCS2B01G387600 chr2A 613273022 613275398 2376 False 484.750000 833 85.317750 744 3038 4 chr2A.!!$F3 2294
10 TraesCS2B01G387600 chr5D 232838410 232839128 718 True 1053.000000 1053 93.194000 1 716 1 chr5D.!!$R1 715
11 TraesCS2B01G387600 chr5D 335881590 335882303 713 True 1000.000000 1000 92.039000 1 711 1 chr5D.!!$R2 710
12 TraesCS2B01G387600 chr3B 191156995 191157708 713 True 1027.000000 1027 92.717000 1 710 1 chr3B.!!$R2 709
13 TraesCS2B01G387600 chr3B 29577010 29577716 706 True 1000.000000 1000 92.243000 4 709 1 chr3B.!!$R1 705
14 TraesCS2B01G387600 chr3B 739693792 739694480 688 True 736.000000 736 85.983000 719 1408 1 chr3B.!!$R3 689
15 TraesCS2B01G387600 chr1B 17633548 17634264 716 True 1018.000000 1018 92.490000 1 710 1 chr1B.!!$R1 709
16 TraesCS2B01G387600 chr1B 455164058 455164772 714 True 1000.000000 1000 92.028000 1 710 1 chr1B.!!$R2 709
17 TraesCS2B01G387600 chr6B 657170273 657170988 715 True 1007.000000 1007 92.179000 1 711 1 chr6B.!!$R1 710
18 TraesCS2B01G387600 chr4B 510875132 510875848 716 False 1000.000000 1000 91.911000 1 713 1 chr4B.!!$F1 712
19 TraesCS2B01G387600 chr3D 565791842 565792559 717 True 992.000000 992 91.667000 1 717 1 chr3D.!!$R1 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
472 473 0.249120 TGGAAGATGGTAGCGTGGTG 59.751 55.000 0.00 0.0 0.00 4.17 F
1092 1112 0.033504 GGACTGTGAGGTTGCTCGAA 59.966 55.000 0.00 0.0 0.00 3.71 F
1159 1179 0.532640 GGACGGTTGGTTAACGGTGT 60.533 55.000 7.88 0.0 46.36 4.16 F
1802 3786 1.632409 AGGTGTCAGCATCAACTCCAT 59.368 47.619 4.59 0.0 32.68 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1708 3510 0.164647 CGAACAAGAGCCTCGCTTTG 59.835 55.000 0.0 0.0 39.88 2.77 R
2058 4172 0.878523 CGAGCCAAACGTCACCTTGA 60.879 55.000 0.0 0.0 0.00 3.02 R
2060 4174 1.145377 ACGAGCCAAACGTCACCTT 59.855 52.632 0.0 0.0 39.87 3.50 R
3170 5584 0.320771 CAAGGTTCACAGAGGACGGG 60.321 60.000 0.0 0.0 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 2.632987 AGGACAACTTGGTTAAGCGT 57.367 45.000 0.00 0.00 37.43 5.07
137 138 3.432326 GGGACGAGACCATTAAGCATCTT 60.432 47.826 0.00 0.00 0.00 2.40
176 177 1.498865 CGAGAGTTTTGTGGCGCACT 61.499 55.000 10.83 1.71 35.11 4.40
204 205 6.311200 GCAAATTGCCTTTAACATTACTCCTG 59.689 38.462 6.72 0.00 37.42 3.86
229 230 6.698107 CGAATTCGGTCAATACGTTATTTGA 58.302 36.000 20.16 0.00 35.37 2.69
471 472 0.249398 GTGGAAGATGGTAGCGTGGT 59.751 55.000 0.00 0.00 0.00 4.16
472 473 0.249120 TGGAAGATGGTAGCGTGGTG 59.751 55.000 0.00 0.00 0.00 4.17
482 483 3.196901 TGGTAGCGTGGTGTATCTTCAAT 59.803 43.478 0.00 0.00 0.00 2.57
490 491 3.438781 TGGTGTATCTTCAATCGGTTTGC 59.561 43.478 0.00 0.00 35.16 3.68
547 549 1.327303 ATCTTTGTTTTGCCAGCCGA 58.673 45.000 0.00 0.00 0.00 5.54
575 584 4.202212 GGCTCTAGGGCTTTTTGTTTTTGA 60.202 41.667 15.73 0.00 37.53 2.69
838 855 1.336887 CGTCGAACTCCCAACAGATGT 60.337 52.381 0.00 0.00 0.00 3.06
862 879 4.657408 TGCCGAGCCCATGCAACA 62.657 61.111 0.00 0.00 41.13 3.33
866 883 1.526575 CCGAGCCCATGCAACAAGTT 61.527 55.000 0.00 0.00 41.13 2.66
1092 1112 0.033504 GGACTGTGAGGTTGCTCGAA 59.966 55.000 0.00 0.00 0.00 3.71
1106 1126 3.030308 CGAATCGTCGGCCATCGG 61.030 66.667 14.93 0.00 43.81 4.18
1159 1179 0.532640 GGACGGTTGGTTAACGGTGT 60.533 55.000 7.88 0.00 46.36 4.16
1234 1260 3.537206 GACTTGGCTGGTGACCGCT 62.537 63.158 15.71 0.00 0.00 5.52
1381 1511 6.870965 AGAGAAGCAAACTATTGTACAGTCAG 59.129 38.462 0.00 0.00 38.85 3.51
1383 1513 7.667557 AGAAGCAAACTATTGTACAGTCAGTA 58.332 34.615 0.00 0.00 38.85 2.74
1384 2591 8.148351 AGAAGCAAACTATTGTACAGTCAGTAA 58.852 33.333 0.00 0.00 38.85 2.24
1385 2592 8.848474 AAGCAAACTATTGTACAGTCAGTAAT 57.152 30.769 0.00 0.00 38.85 1.89
1645 3177 7.817962 AGTTTAGCGATTCTTAGCTGTTCTTTA 59.182 33.333 0.00 0.00 44.32 1.85
1708 3510 5.678955 ACTTTCCATCCAGTAGGTTAGTC 57.321 43.478 0.00 0.00 35.89 2.59
1802 3786 1.632409 AGGTGTCAGCATCAACTCCAT 59.368 47.619 4.59 0.00 32.68 3.41
1805 3789 3.076621 GTGTCAGCATCAACTCCATCAA 58.923 45.455 0.00 0.00 0.00 2.57
1857 3854 2.611225 TTTCCTTTTGTTTGCGCCAT 57.389 40.000 4.18 0.00 0.00 4.40
1925 4018 6.935771 GCAAGCATACTAGTAGTACTCCTAGA 59.064 42.308 24.69 11.64 32.84 2.43
1926 4019 7.118680 GCAAGCATACTAGTAGTACTCCTAGAG 59.881 44.444 24.69 15.75 32.84 2.43
1965 4061 3.896272 ACCGCTAAGAAATACCCCTAGAG 59.104 47.826 0.00 0.00 0.00 2.43
2056 4170 4.702831 TGATTCAATCACGCCTGCTAATA 58.297 39.130 0.00 0.00 33.59 0.98
2057 4171 5.122519 TGATTCAATCACGCCTGCTAATAA 58.877 37.500 0.00 0.00 33.59 1.40
2058 4172 5.764686 TGATTCAATCACGCCTGCTAATAAT 59.235 36.000 0.00 0.00 33.59 1.28
2059 4173 5.673337 TTCAATCACGCCTGCTAATAATC 57.327 39.130 0.00 0.00 0.00 1.75
2060 4174 4.702831 TCAATCACGCCTGCTAATAATCA 58.297 39.130 0.00 0.00 0.00 2.57
2072 4186 6.176975 TGCTAATAATCAAGGTGACGTTTG 57.823 37.500 0.00 0.00 0.00 2.93
2110 4233 4.459089 GTCTGGAGGCGAGGTGGC 62.459 72.222 0.00 0.00 45.27 5.01
2121 4244 0.671781 CGAGGTGGCAAAGGTGAGAG 60.672 60.000 0.00 0.00 0.00 3.20
2473 4632 1.449246 ATTGCAGAGCCTCGACAGC 60.449 57.895 0.00 0.00 0.00 4.40
2525 4684 4.235762 GGCAGGCTCGCGGGAATA 62.236 66.667 12.03 0.00 0.00 1.75
2577 4796 3.005791 CCCTTTCGAAATTCTTGCTTGGT 59.994 43.478 11.70 0.00 0.00 3.67
2659 4881 1.000955 ACGATGAAGTCACGGAGCTTT 59.999 47.619 0.00 0.00 0.00 3.51
2796 5043 2.743636 TGCTGTGTAGTACTCCAAGC 57.256 50.000 0.00 7.12 0.00 4.01
2925 5215 2.941720 GTGAGACTCCCAAATGATGAGC 59.058 50.000 0.00 0.00 0.00 4.26
2943 5233 3.589654 CTGTTGGGCGCCTTCTCGA 62.590 63.158 28.56 6.29 0.00 4.04
2945 5235 2.994995 TTGGGCGCCTTCTCGAGA 60.995 61.111 28.56 12.08 0.00 4.04
2972 5262 8.766151 GGATAAAGAAAGATTAGTCACCGATTC 58.234 37.037 0.00 0.00 0.00 2.52
3027 5430 3.530265 TCCATTGATTTCTGCAATGCC 57.470 42.857 1.53 0.00 46.94 4.40
3038 5445 5.590530 TTCTGCAATGCCCGTTTATTTAT 57.409 34.783 1.53 0.00 0.00 1.40
3040 5447 5.971763 TCTGCAATGCCCGTTTATTTATTT 58.028 33.333 1.53 0.00 0.00 1.40
3041 5448 7.101652 TCTGCAATGCCCGTTTATTTATTTA 57.898 32.000 1.53 0.00 0.00 1.40
3042 5449 7.199766 TCTGCAATGCCCGTTTATTTATTTAG 58.800 34.615 1.53 0.00 0.00 1.85
3043 5450 6.868622 TGCAATGCCCGTTTATTTATTTAGT 58.131 32.000 1.53 0.00 0.00 2.24
3044 5451 7.997482 TGCAATGCCCGTTTATTTATTTAGTA 58.003 30.769 1.53 0.00 0.00 1.82
3133 5547 2.239654 TCCATCTTGGAGACACCCAATC 59.760 50.000 0.00 0.00 42.67 2.67
3140 5554 4.927267 TGGAGACACCCAATCATAAGTT 57.073 40.909 0.00 0.00 38.00 2.66
3141 5555 4.588899 TGGAGACACCCAATCATAAGTTG 58.411 43.478 0.00 0.00 38.00 3.16
3155 5569 9.142515 CAATCATAAGTTGTGCAAATTGTGTAT 57.857 29.630 16.78 9.58 38.21 2.29
3184 5598 1.358152 AATTCCCCGTCCTCTGTGAA 58.642 50.000 0.00 0.00 0.00 3.18
3187 5601 1.913762 CCCCGTCCTCTGTGAACCT 60.914 63.158 0.00 0.00 0.00 3.50
3210 5628 7.260603 CCTTGAAGGTAAATCATGGACAATTC 58.739 38.462 2.25 0.00 42.01 2.17
3227 5645 8.352201 TGGACAATTCTAGTTGATCTTTGTTTG 58.648 33.333 0.40 0.00 33.37 2.93
3232 5650 7.969536 TTCTAGTTGATCTTTGTTTGAGAGG 57.030 36.000 0.00 0.00 0.00 3.69
3233 5651 5.934625 TCTAGTTGATCTTTGTTTGAGAGGC 59.065 40.000 0.00 0.00 0.00 4.70
3234 5652 4.464008 AGTTGATCTTTGTTTGAGAGGCA 58.536 39.130 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 7.914427 ACACCTAGTAGATCATGTCCAATTA 57.086 36.000 0.00 0.00 0.00 1.40
137 138 2.810439 CCAACGGGCAATCAAAGAAA 57.190 45.000 0.00 0.00 0.00 2.52
204 205 4.703899 ATAACGTATTGACCGAATTCGC 57.296 40.909 22.36 10.26 38.13 4.70
229 230 2.159382 CTATCCCAACAAGCCACGTTT 58.841 47.619 0.00 0.00 0.00 3.60
376 377 1.269102 ACATACGGATCAGCGCTGTAC 60.269 52.381 34.70 27.06 30.52 2.90
425 426 2.301870 AGATCCAGTAACCAAACGCTCA 59.698 45.455 0.00 0.00 0.00 4.26
456 457 3.031736 AGATACACCACGCTACCATCTT 58.968 45.455 0.00 0.00 0.00 2.40
471 472 4.438608 GCATGCAAACCGATTGAAGATACA 60.439 41.667 14.21 0.00 41.85 2.29
472 473 4.037690 GCATGCAAACCGATTGAAGATAC 58.962 43.478 14.21 0.00 41.85 2.24
482 483 1.673993 ATGACCGCATGCAAACCGA 60.674 52.632 19.57 0.00 32.31 4.69
526 528 2.887783 TCGGCTGGCAAAACAAAGATAA 59.112 40.909 1.08 0.00 0.00 1.75
547 549 2.827921 CAAAAAGCCCTAGAGCCACAAT 59.172 45.455 0.00 0.00 0.00 2.71
575 584 1.871080 CTCACAAAGAGCCTCAACGT 58.129 50.000 0.00 0.00 37.59 3.99
651 660 2.076100 ACGATGCATACGGCCATATTG 58.924 47.619 18.34 0.00 43.89 1.90
717 728 4.688021 CGACCCCTCTGAAAAATAGAGAG 58.312 47.826 3.71 0.00 43.41 3.20
1146 1166 2.777969 ACGCAACACCGTTAACCAA 58.222 47.368 0.00 0.00 38.47 3.67
1708 3510 0.164647 CGAACAAGAGCCTCGCTTTG 59.835 55.000 0.00 0.00 39.88 2.77
1802 3786 1.134521 CATGTAGGCCGCCTTACTTGA 60.135 52.381 19.35 0.00 34.61 3.02
1805 3789 1.830145 CCATGTAGGCCGCCTTACT 59.170 57.895 19.35 0.00 34.61 2.24
1857 3854 0.670162 GCTGGCAAGCTGAGTTTTGA 59.330 50.000 5.60 0.00 46.60 2.69
1919 3980 9.503399 GGTTCAATAAGAAGAAAAACTCTAGGA 57.497 33.333 0.00 0.00 36.78 2.94
1920 3981 8.443937 CGGTTCAATAAGAAGAAAAACTCTAGG 58.556 37.037 0.00 0.00 36.78 3.02
1925 4018 6.635030 AGCGGTTCAATAAGAAGAAAAACT 57.365 33.333 0.00 0.00 36.78 2.66
1926 4019 8.287503 TCTTAGCGGTTCAATAAGAAGAAAAAC 58.712 33.333 0.00 0.00 36.78 2.43
2056 4170 1.880027 GAGCCAAACGTCACCTTGATT 59.120 47.619 0.00 0.00 0.00 2.57
2057 4171 1.523758 GAGCCAAACGTCACCTTGAT 58.476 50.000 0.00 0.00 0.00 2.57
2058 4172 0.878523 CGAGCCAAACGTCACCTTGA 60.879 55.000 0.00 0.00 0.00 3.02
2059 4173 1.157870 ACGAGCCAAACGTCACCTTG 61.158 55.000 0.00 0.00 39.87 3.61
2060 4174 1.145377 ACGAGCCAAACGTCACCTT 59.855 52.632 0.00 0.00 39.87 3.50
2072 4186 2.271800 CAAGTAGATTGGTGACGAGCC 58.728 52.381 0.00 0.00 35.08 4.70
2093 4213 4.459089 GCCACCTCGCCTCCAGAC 62.459 72.222 0.00 0.00 0.00 3.51
2110 4233 3.879295 ACACATCACAACTCTCACCTTTG 59.121 43.478 0.00 0.00 0.00 2.77
2121 4244 1.317613 TCCCAAGCACACATCACAAC 58.682 50.000 0.00 0.00 0.00 3.32
2473 4632 1.643310 TCCCAATTTCCCCTGCTTTG 58.357 50.000 0.00 0.00 0.00 2.77
2525 4684 6.483640 GGACAGATTTTCTTCTTGTGTACTGT 59.516 38.462 0.00 0.00 37.53 3.55
2577 4796 1.272807 CGGTAAGAACTCCCTCCCAA 58.727 55.000 0.00 0.00 0.00 4.12
2796 5043 2.256117 AACCTCCTTCGTTGTTCCTG 57.744 50.000 0.00 0.00 0.00 3.86
2925 5215 3.121030 CGAGAAGGCGCCCAACAG 61.121 66.667 26.15 8.81 0.00 3.16
2943 5233 7.342284 TCGGTGACTAATCTTTCTTTATCCTCT 59.658 37.037 0.00 0.00 0.00 3.69
2945 5235 7.419711 TCGGTGACTAATCTTTCTTTATCCT 57.580 36.000 0.00 0.00 0.00 3.24
2972 5262 9.443283 CTCAAAGAGTTTGTGATCACTAAAAAG 57.557 33.333 25.55 11.83 41.36 2.27
3066 5475 9.243105 ACGCCTTTTGGATAATTATATGCTAAT 57.757 29.630 0.00 0.00 44.07 1.73
3067 5476 8.511321 CACGCCTTTTGGATAATTATATGCTAA 58.489 33.333 0.00 0.00 44.07 3.09
3079 5492 3.426615 ACAATTCCACGCCTTTTGGATA 58.573 40.909 0.00 0.00 42.88 2.59
3159 5573 3.521937 ACAGAGGACGGGGAATTATTCAA 59.478 43.478 7.29 0.00 0.00 2.69
3160 5574 3.112263 ACAGAGGACGGGGAATTATTCA 58.888 45.455 7.29 0.00 0.00 2.57
3161 5575 3.134081 TCACAGAGGACGGGGAATTATTC 59.866 47.826 0.00 0.00 0.00 1.75
3170 5584 0.320771 CAAGGTTCACAGAGGACGGG 60.321 60.000 0.00 0.00 0.00 5.28
3187 5601 9.177608 CTAGAATTGTCCATGATTTACCTTCAA 57.822 33.333 0.00 0.00 0.00 2.69
3198 5616 7.884877 ACAAAGATCAACTAGAATTGTCCATGA 59.115 33.333 0.00 0.00 30.55 3.07
3210 5628 5.702670 TGCCTCTCAAACAAAGATCAACTAG 59.297 40.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.