Multiple sequence alignment - TraesCS2B01G387200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G387200 chr2B 100.000 7709 0 0 1 7709 550406953 550399245 0.000000e+00 14236
1 TraesCS2B01G387200 chr2B 93.561 264 14 3 308 569 147482089 147482351 2.610000e-104 390
2 TraesCS2B01G387200 chr2D 92.591 3995 141 56 647 4519 471222782 471218821 0.000000e+00 5594
3 TraesCS2B01G387200 chr2D 96.060 2716 64 10 4513 7187 471218790 471216077 0.000000e+00 4383
4 TraesCS2B01G387200 chr2D 93.960 447 22 3 7266 7709 471216084 471215640 0.000000e+00 671
5 TraesCS2B01G387200 chr2D 91.362 301 24 2 5 304 471223138 471222839 2.000000e-110 411
6 TraesCS2B01G387200 chr2D 89.744 156 12 4 6851 7003 79056169 79056323 6.100000e-46 196
7 TraesCS2B01G387200 chr2D 95.876 97 4 0 7181 7277 573891812 573891908 2.880000e-34 158
8 TraesCS2B01G387200 chr2D 93.333 105 5 2 7166 7270 643235809 643235911 3.730000e-33 154
9 TraesCS2B01G387200 chr2D 81.081 148 13 11 567 707 471222832 471222693 3.810000e-18 104
10 TraesCS2B01G387200 chr2A 90.489 4311 209 78 647 4811 612852254 612847999 0.000000e+00 5504
11 TraesCS2B01G387200 chr2A 90.671 1983 113 25 3930 5847 612848898 612846923 0.000000e+00 2571
12 TraesCS2B01G387200 chr2A 93.541 1316 61 17 5884 7185 612846928 612845623 0.000000e+00 1938
13 TraesCS2B01G387200 chr2A 89.951 408 21 13 7304 7709 612845594 612845205 6.900000e-140 508
14 TraesCS2B01G387200 chr2A 91.857 307 24 1 4 309 612852615 612852309 1.990000e-115 427
15 TraesCS2B01G387200 chr2A 91.346 104 8 1 7177 7279 19379138 19379035 2.900000e-29 141
16 TraesCS2B01G387200 chr6A 81.850 573 77 19 4997 5565 446297731 446298280 2.540000e-124 457
17 TraesCS2B01G387200 chr6A 92.453 106 8 0 6078 6183 446299404 446299509 1.340000e-32 152
18 TraesCS2B01G387200 chr7B 93.870 261 14 2 307 565 397446421 397446681 7.250000e-105 392
19 TraesCS2B01G387200 chr7B 93.284 268 15 3 304 568 528747169 528747436 7.250000e-105 392
20 TraesCS2B01G387200 chr7B 90.850 153 10 3 6851 7000 44939556 44939707 1.310000e-47 202
21 TraesCS2B01G387200 chr7B 89.375 160 13 3 6851 7007 505937316 505937474 1.700000e-46 198
22 TraesCS2B01G387200 chr4B 93.870 261 14 2 307 565 54130770 54130510 7.250000e-105 392
23 TraesCS2B01G387200 chr4B 93.511 262 15 2 308 567 652280705 652280966 9.380000e-104 388
24 TraesCS2B01G387200 chr4B 89.744 156 12 4 6847 6999 106227407 106227561 6.100000e-46 196
25 TraesCS2B01G387200 chr5A 93.846 260 14 2 308 565 529182579 529182838 2.610000e-104 390
26 TraesCS2B01G387200 chr4A 92.884 267 17 2 305 569 438615257 438615523 3.370000e-103 387
27 TraesCS2B01G387200 chr4A 92.803 264 17 2 304 565 645738936 645739199 1.570000e-101 381
28 TraesCS2B01G387200 chr7A 93.156 263 16 2 307 567 233305544 233305282 1.210000e-102 385
29 TraesCS2B01G387200 chr7A 98.901 91 0 1 7178 7267 42986117 42986207 2.230000e-35 161
30 TraesCS2B01G387200 chr6B 87.251 251 32 0 2998 3248 477218768 477219018 3.520000e-73 287
31 TraesCS2B01G387200 chr6B 92.453 106 8 0 6078 6183 477222101 477222206 1.340000e-32 152
32 TraesCS2B01G387200 chr6D 86.220 254 35 0 2995 3248 309581223 309581476 7.620000e-70 276
33 TraesCS2B01G387200 chr6D 96.774 93 3 0 7176 7268 427344946 427344854 1.040000e-33 156
34 TraesCS2B01G387200 chr6D 92.453 106 8 0 6078 6183 309584581 309584686 1.340000e-32 152
35 TraesCS2B01G387200 chr7D 88.554 166 14 4 6848 7010 34373317 34373480 6.100000e-46 196
36 TraesCS2B01G387200 chr4D 89.809 157 11 4 6847 6999 74079349 74079504 6.100000e-46 196
37 TraesCS2B01G387200 chr4D 95.745 94 3 1 7174 7267 64347353 64347445 4.820000e-32 150
38 TraesCS2B01G387200 chr3B 89.809 157 11 3 6843 6996 383704486 383704332 6.100000e-46 196
39 TraesCS2B01G387200 chr5B 95.745 94 2 2 7175 7267 184285257 184285349 4.820000e-32 150
40 TraesCS2B01G387200 chr1B 95.699 93 4 0 7179 7271 598882804 598882712 4.820000e-32 150
41 TraesCS2B01G387200 chr1A 95.699 93 3 1 7176 7267 527084023 527083931 1.730000e-31 148
42 TraesCS2B01G387200 chr1A 82.099 162 14 6 6454 6610 555805693 555805844 2.920000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G387200 chr2B 550399245 550406953 7708 True 14236.0 14236 100.0000 1 7709 1 chr2B.!!$R1 7708
1 TraesCS2B01G387200 chr2D 471215640 471223138 7498 True 2232.6 5594 91.0108 5 7709 5 chr2D.!!$R1 7704
2 TraesCS2B01G387200 chr2A 612845205 612852615 7410 True 2189.6 5504 91.3018 4 7709 5 chr2A.!!$R2 7705
3 TraesCS2B01G387200 chr6A 446297731 446299509 1778 False 304.5 457 87.1515 4997 6183 2 chr6A.!!$F1 1186
4 TraesCS2B01G387200 chr6B 477218768 477222206 3438 False 219.5 287 89.8520 2998 6183 2 chr6B.!!$F1 3185
5 TraesCS2B01G387200 chr6D 309581223 309584686 3463 False 214.0 276 89.3365 2995 6183 2 chr6D.!!$F1 3188

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 369 0.033504 ACGGTCTTTGATGCACGACT 59.966 50.0 0.00 0.00 0.00 4.18 F
1599 1676 0.106708 GCGTGGCATCTTCTGGGATA 59.893 55.0 0.00 0.00 0.00 2.59 F
1610 1687 0.031716 TCTGGGATAGTGCAGAGCCT 60.032 55.0 3.03 0.00 0.00 4.58 F
1611 1688 0.106335 CTGGGATAGTGCAGAGCCTG 59.894 60.0 3.03 0.00 34.12 4.85 F
2049 2128 0.319211 TTGTGTCTACCGTTCCTGCG 60.319 55.0 0.00 0.00 0.00 5.18 F
2784 2889 0.447406 TTTGAATCTCGCATGCGGTG 59.553 50.0 37.18 28.63 40.25 4.94 F
4092 4438 0.684535 TGCCCCTTTTTAGCTTTGCC 59.315 50.0 0.00 0.00 0.00 4.52 F
4525 4926 0.975135 ATGCTCATCGCTGCCTCTAT 59.025 50.0 0.00 0.00 40.11 1.98 F
6055 7984 0.323451 GGTGGGTCATTTGGTCTCCC 60.323 60.0 0.00 0.00 38.68 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 1683 0.707616 ACTACTCCCAGAGACAGGCT 59.292 55.000 0.00 0.0 33.32 4.58 R
2631 2736 3.572632 AGTAGGAGTATACGACTGGCA 57.427 47.619 11.22 0.0 39.06 4.92 R
2883 2988 3.870633 ACTCGTCCAACAAGGTAGATC 57.129 47.619 0.00 0.0 39.02 2.75 R
3179 3300 5.355350 AGGTATACAAAATGCAGCAGTCTTC 59.645 40.000 0.00 0.0 0.00 2.87 R
3700 3905 4.041444 TGCCATGCCAAAAAGGTTCTTTAT 59.959 37.500 0.00 0.0 40.61 1.40 R
4329 4676 1.139498 TGCCACATCCCTTTCCCTCA 61.139 55.000 0.00 0.0 0.00 3.86 R
5013 6151 3.569194 TGTCTGCCTACAGGAAAAACA 57.431 42.857 0.00 0.0 44.59 2.83 R
6394 8410 2.619147 TGCCAATTTGCCATCGAAATG 58.381 42.857 0.00 0.0 0.00 2.32 R
7439 9476 0.261402 AATCAATGCCCGGAATCCCA 59.739 50.000 0.73 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.827236 TGTAGGGAAAGATATGTCGTTTGATTT 59.173 33.333 0.00 0.00 0.00 2.17
128 130 8.253113 CCTTTAGCATTCTTACAAAATCCATGT 58.747 33.333 0.00 0.00 34.81 3.21
139 141 6.432403 ACAAAATCCATGTAAACCAATGGT 57.568 33.333 0.00 0.00 37.65 3.55
159 161 4.465305 TGGTGGCCTTAGTTAGTAGAGAAC 59.535 45.833 3.32 0.00 0.00 3.01
308 310 4.335315 CCGAGAATTTTAGCCTGCAATGTA 59.665 41.667 0.00 0.00 0.00 2.29
309 311 5.266242 CGAGAATTTTAGCCTGCAATGTAC 58.734 41.667 0.00 0.00 0.00 2.90
310 312 5.065218 CGAGAATTTTAGCCTGCAATGTACT 59.935 40.000 0.00 0.00 0.00 2.73
311 313 6.442513 AGAATTTTAGCCTGCAATGTACTC 57.557 37.500 0.00 0.00 0.00 2.59
312 314 5.358160 AGAATTTTAGCCTGCAATGTACTCC 59.642 40.000 0.00 0.00 0.00 3.85
313 315 2.710096 TTAGCCTGCAATGTACTCCC 57.290 50.000 0.00 0.00 0.00 4.30
314 316 1.879575 TAGCCTGCAATGTACTCCCT 58.120 50.000 0.00 0.00 0.00 4.20
315 317 0.543749 AGCCTGCAATGTACTCCCTC 59.456 55.000 0.00 0.00 0.00 4.30
316 318 0.464554 GCCTGCAATGTACTCCCTCC 60.465 60.000 0.00 0.00 0.00 4.30
317 319 1.207791 CCTGCAATGTACTCCCTCCT 58.792 55.000 0.00 0.00 0.00 3.69
318 320 1.561542 CCTGCAATGTACTCCCTCCTT 59.438 52.381 0.00 0.00 0.00 3.36
319 321 2.420687 CCTGCAATGTACTCCCTCCTTC 60.421 54.545 0.00 0.00 0.00 3.46
320 322 1.559682 TGCAATGTACTCCCTCCTTCC 59.440 52.381 0.00 0.00 0.00 3.46
321 323 1.134068 GCAATGTACTCCCTCCTTCCC 60.134 57.143 0.00 0.00 0.00 3.97
322 324 2.196595 CAATGTACTCCCTCCTTCCCA 58.803 52.381 0.00 0.00 0.00 4.37
323 325 2.576191 CAATGTACTCCCTCCTTCCCAA 59.424 50.000 0.00 0.00 0.00 4.12
324 326 2.426431 TGTACTCCCTCCTTCCCAAA 57.574 50.000 0.00 0.00 0.00 3.28
325 327 2.708759 TGTACTCCCTCCTTCCCAAAA 58.291 47.619 0.00 0.00 0.00 2.44
326 328 3.265489 TGTACTCCCTCCTTCCCAAAAT 58.735 45.455 0.00 0.00 0.00 1.82
327 329 4.440808 TGTACTCCCTCCTTCCCAAAATA 58.559 43.478 0.00 0.00 0.00 1.40
328 330 5.043762 TGTACTCCCTCCTTCCCAAAATAT 58.956 41.667 0.00 0.00 0.00 1.28
329 331 6.214278 TGTACTCCCTCCTTCCCAAAATATA 58.786 40.000 0.00 0.00 0.00 0.86
330 332 6.679303 TGTACTCCCTCCTTCCCAAAATATAA 59.321 38.462 0.00 0.00 0.00 0.98
331 333 6.267492 ACTCCCTCCTTCCCAAAATATAAG 57.733 41.667 0.00 0.00 0.00 1.73
332 334 5.134509 ACTCCCTCCTTCCCAAAATATAAGG 59.865 44.000 0.00 0.00 39.93 2.69
333 335 4.141018 TCCCTCCTTCCCAAAATATAAGGC 60.141 45.833 0.00 0.00 38.70 4.35
334 336 3.821033 CCTCCTTCCCAAAATATAAGGCG 59.179 47.826 0.00 0.00 38.70 5.52
335 337 3.219281 TCCTTCCCAAAATATAAGGCGC 58.781 45.455 0.00 0.00 38.70 6.53
336 338 2.031157 CCTTCCCAAAATATAAGGCGCG 60.031 50.000 0.00 0.00 32.66 6.86
337 339 2.623878 TCCCAAAATATAAGGCGCGA 57.376 45.000 12.10 0.00 0.00 5.87
338 340 3.134574 TCCCAAAATATAAGGCGCGAT 57.865 42.857 12.10 0.00 0.00 4.58
339 341 3.482436 TCCCAAAATATAAGGCGCGATT 58.518 40.909 12.10 6.21 0.00 3.34
340 342 3.252215 TCCCAAAATATAAGGCGCGATTG 59.748 43.478 12.10 0.00 0.00 2.67
341 343 3.252215 CCCAAAATATAAGGCGCGATTGA 59.748 43.478 12.10 0.00 0.00 2.57
342 344 4.219033 CCAAAATATAAGGCGCGATTGAC 58.781 43.478 12.10 0.00 0.00 3.18
343 345 4.024048 CCAAAATATAAGGCGCGATTGACT 60.024 41.667 12.10 0.00 0.00 3.41
344 346 5.505654 CCAAAATATAAGGCGCGATTGACTT 60.506 40.000 12.10 7.96 0.00 3.01
345 347 5.751243 AAATATAAGGCGCGATTGACTTT 57.249 34.783 12.10 0.00 0.00 2.66
346 348 5.751243 AATATAAGGCGCGATTGACTTTT 57.249 34.783 12.10 3.43 0.00 2.27
347 349 5.751243 ATATAAGGCGCGATTGACTTTTT 57.249 34.783 12.10 0.00 0.00 1.94
348 350 6.854496 ATATAAGGCGCGATTGACTTTTTA 57.146 33.333 12.10 0.00 0.00 1.52
349 351 2.894307 AGGCGCGATTGACTTTTTAC 57.106 45.000 12.10 0.00 0.00 2.01
350 352 1.127951 AGGCGCGATTGACTTTTTACG 59.872 47.619 12.10 0.00 0.00 3.18
351 353 1.520368 GCGCGATTGACTTTTTACGG 58.480 50.000 12.10 0.00 0.00 4.02
352 354 1.136169 GCGCGATTGACTTTTTACGGT 60.136 47.619 12.10 0.00 0.00 4.83
353 355 2.754478 CGCGATTGACTTTTTACGGTC 58.246 47.619 0.00 0.00 0.00 4.79
354 356 2.410730 CGCGATTGACTTTTTACGGTCT 59.589 45.455 0.00 0.00 34.01 3.85
355 357 3.120786 CGCGATTGACTTTTTACGGTCTT 60.121 43.478 0.00 0.00 34.01 3.01
356 358 4.609783 CGCGATTGACTTTTTACGGTCTTT 60.610 41.667 0.00 0.00 34.01 2.52
357 359 4.611366 GCGATTGACTTTTTACGGTCTTTG 59.389 41.667 0.00 0.00 34.01 2.77
358 360 5.559417 GCGATTGACTTTTTACGGTCTTTGA 60.559 40.000 0.00 0.00 34.01 2.69
359 361 6.599437 CGATTGACTTTTTACGGTCTTTGAT 58.401 36.000 0.00 0.00 34.01 2.57
360 362 6.519761 CGATTGACTTTTTACGGTCTTTGATG 59.480 38.462 0.00 0.00 34.01 3.07
361 363 5.103290 TGACTTTTTACGGTCTTTGATGC 57.897 39.130 0.00 0.00 34.01 3.91
362 364 4.576873 TGACTTTTTACGGTCTTTGATGCA 59.423 37.500 0.00 0.00 34.01 3.96
363 365 4.855531 ACTTTTTACGGTCTTTGATGCAC 58.144 39.130 0.00 0.00 0.00 4.57
364 366 3.529634 TTTTACGGTCTTTGATGCACG 57.470 42.857 0.00 0.00 0.00 5.34
365 367 2.442212 TTACGGTCTTTGATGCACGA 57.558 45.000 0.00 0.00 0.00 4.35
366 368 1.705256 TACGGTCTTTGATGCACGAC 58.295 50.000 0.00 0.00 0.00 4.34
367 369 0.033504 ACGGTCTTTGATGCACGACT 59.966 50.000 0.00 0.00 0.00 4.18
368 370 1.148310 CGGTCTTTGATGCACGACTT 58.852 50.000 0.00 0.00 0.00 3.01
369 371 1.531149 CGGTCTTTGATGCACGACTTT 59.469 47.619 0.00 0.00 0.00 2.66
370 372 2.662791 CGGTCTTTGATGCACGACTTTG 60.663 50.000 0.00 0.00 0.00 2.77
371 373 2.548057 GGTCTTTGATGCACGACTTTGA 59.452 45.455 0.00 0.00 0.00 2.69
372 374 3.545633 GTCTTTGATGCACGACTTTGAC 58.454 45.455 0.00 0.00 0.00 3.18
373 375 2.548057 TCTTTGATGCACGACTTTGACC 59.452 45.455 0.00 0.00 0.00 4.02
374 376 1.960417 TTGATGCACGACTTTGACCA 58.040 45.000 0.00 0.00 0.00 4.02
375 377 1.225855 TGATGCACGACTTTGACCAC 58.774 50.000 0.00 0.00 0.00 4.16
376 378 1.202639 TGATGCACGACTTTGACCACT 60.203 47.619 0.00 0.00 0.00 4.00
377 379 2.036604 TGATGCACGACTTTGACCACTA 59.963 45.455 0.00 0.00 0.00 2.74
378 380 2.605837 TGCACGACTTTGACCACTAA 57.394 45.000 0.00 0.00 0.00 2.24
379 381 3.120321 TGCACGACTTTGACCACTAAT 57.880 42.857 0.00 0.00 0.00 1.73
380 382 4.260139 TGCACGACTTTGACCACTAATA 57.740 40.909 0.00 0.00 0.00 0.98
381 383 4.827692 TGCACGACTTTGACCACTAATAT 58.172 39.130 0.00 0.00 0.00 1.28
382 384 5.968254 TGCACGACTTTGACCACTAATATA 58.032 37.500 0.00 0.00 0.00 0.86
383 385 6.578944 TGCACGACTTTGACCACTAATATAT 58.421 36.000 0.00 0.00 0.00 0.86
384 386 7.718525 TGCACGACTTTGACCACTAATATATA 58.281 34.615 0.00 0.00 0.00 0.86
385 387 8.364894 TGCACGACTTTGACCACTAATATATAT 58.635 33.333 0.00 0.00 0.00 0.86
386 388 9.204570 GCACGACTTTGACCACTAATATATATT 57.795 33.333 12.51 12.51 0.00 1.28
418 420 7.600231 ATGGATTGAACATGTATAAATGGCA 57.400 32.000 7.81 2.73 31.46 4.92
419 421 7.600231 TGGATTGAACATGTATAAATGGCAT 57.400 32.000 7.81 0.00 31.46 4.40
420 422 7.660112 TGGATTGAACATGTATAAATGGCATC 58.340 34.615 7.81 3.83 31.46 3.91
421 423 6.803320 GGATTGAACATGTATAAATGGCATCG 59.197 38.462 7.81 0.00 31.46 3.84
422 424 6.691754 TTGAACATGTATAAATGGCATCGT 57.308 33.333 7.81 0.00 31.46 3.73
423 425 6.299023 TGAACATGTATAAATGGCATCGTC 57.701 37.500 7.81 0.00 31.46 4.20
424 426 4.990543 ACATGTATAAATGGCATCGTCG 57.009 40.909 7.81 0.00 31.46 5.12
425 427 4.377021 ACATGTATAAATGGCATCGTCGT 58.623 39.130 7.81 0.00 31.46 4.34
426 428 5.534407 ACATGTATAAATGGCATCGTCGTA 58.466 37.500 7.81 0.00 31.46 3.43
427 429 6.163476 ACATGTATAAATGGCATCGTCGTAT 58.837 36.000 7.81 0.00 31.46 3.06
428 430 6.649141 ACATGTATAAATGGCATCGTCGTATT 59.351 34.615 7.81 0.00 31.46 1.89
429 431 7.172532 ACATGTATAAATGGCATCGTCGTATTT 59.827 33.333 7.81 0.00 31.46 1.40
430 432 6.883129 TGTATAAATGGCATCGTCGTATTTG 58.117 36.000 0.00 0.00 0.00 2.32
431 433 6.480651 TGTATAAATGGCATCGTCGTATTTGT 59.519 34.615 0.00 0.00 0.00 2.83
432 434 3.944422 AATGGCATCGTCGTATTTGTC 57.056 42.857 0.00 0.00 0.00 3.18
433 435 2.665649 TGGCATCGTCGTATTTGTCT 57.334 45.000 0.00 0.00 0.00 3.41
434 436 2.967362 TGGCATCGTCGTATTTGTCTT 58.033 42.857 0.00 0.00 0.00 3.01
435 437 2.670905 TGGCATCGTCGTATTTGTCTTG 59.329 45.455 0.00 0.00 0.00 3.02
436 438 2.536928 GGCATCGTCGTATTTGTCTTGC 60.537 50.000 0.00 0.00 0.00 4.01
437 439 2.093625 GCATCGTCGTATTTGTCTTGCA 59.906 45.455 0.00 0.00 0.00 4.08
438 440 3.424302 GCATCGTCGTATTTGTCTTGCAA 60.424 43.478 0.00 0.00 34.87 4.08
512 514 7.596248 ACATGAAAATCATAGTCAAAGTTGTGC 59.404 33.333 0.00 0.00 34.28 4.57
513 515 6.446318 TGAAAATCATAGTCAAAGTTGTGCC 58.554 36.000 0.00 0.00 0.00 5.01
514 516 6.040278 TGAAAATCATAGTCAAAGTTGTGCCA 59.960 34.615 0.00 0.00 0.00 4.92
515 517 5.376854 AATCATAGTCAAAGTTGTGCCAC 57.623 39.130 0.00 0.00 0.00 5.01
516 518 2.805671 TCATAGTCAAAGTTGTGCCACG 59.194 45.455 0.00 0.00 0.00 4.94
517 519 2.605837 TAGTCAAAGTTGTGCCACGA 57.394 45.000 0.00 0.00 0.00 4.35
518 520 1.745232 AGTCAAAGTTGTGCCACGAA 58.255 45.000 0.00 0.00 0.00 3.85
519 521 1.670811 AGTCAAAGTTGTGCCACGAAG 59.329 47.619 0.00 0.00 0.00 3.79
520 522 1.668751 GTCAAAGTTGTGCCACGAAGA 59.331 47.619 0.00 0.00 0.00 2.87
521 523 1.668751 TCAAAGTTGTGCCACGAAGAC 59.331 47.619 0.00 0.00 0.00 3.01
522 524 1.021968 AAAGTTGTGCCACGAAGACC 58.978 50.000 0.00 0.00 0.00 3.85
523 525 0.107410 AAGTTGTGCCACGAAGACCA 60.107 50.000 0.00 0.00 0.00 4.02
524 526 0.532862 AGTTGTGCCACGAAGACCAG 60.533 55.000 0.00 0.00 0.00 4.00
525 527 0.531974 GTTGTGCCACGAAGACCAGA 60.532 55.000 0.00 0.00 0.00 3.86
526 528 0.179234 TTGTGCCACGAAGACCAGAA 59.821 50.000 0.00 0.00 0.00 3.02
527 529 0.179234 TGTGCCACGAAGACCAGAAA 59.821 50.000 0.00 0.00 0.00 2.52
528 530 1.305201 GTGCCACGAAGACCAGAAAA 58.695 50.000 0.00 0.00 0.00 2.29
529 531 1.264288 GTGCCACGAAGACCAGAAAAG 59.736 52.381 0.00 0.00 0.00 2.27
530 532 1.134220 TGCCACGAAGACCAGAAAAGT 60.134 47.619 0.00 0.00 0.00 2.66
531 533 1.531578 GCCACGAAGACCAGAAAAGTC 59.468 52.381 0.00 0.00 34.31 3.01
532 534 2.833794 CCACGAAGACCAGAAAAGTCA 58.166 47.619 0.00 0.00 36.68 3.41
533 535 3.202906 CCACGAAGACCAGAAAAGTCAA 58.797 45.455 0.00 0.00 36.68 3.18
534 536 3.625764 CCACGAAGACCAGAAAAGTCAAA 59.374 43.478 0.00 0.00 36.68 2.69
535 537 4.495844 CCACGAAGACCAGAAAAGTCAAAC 60.496 45.833 0.00 0.00 36.68 2.93
536 538 3.626217 ACGAAGACCAGAAAAGTCAAACC 59.374 43.478 0.00 0.00 36.68 3.27
537 539 3.003378 CGAAGACCAGAAAAGTCAAACCC 59.997 47.826 0.00 0.00 36.68 4.11
538 540 2.572290 AGACCAGAAAAGTCAAACCCG 58.428 47.619 0.00 0.00 36.68 5.28
539 541 1.607148 GACCAGAAAAGTCAAACCCGG 59.393 52.381 0.00 0.00 34.27 5.73
540 542 0.313987 CCAGAAAAGTCAAACCCGGC 59.686 55.000 0.00 0.00 0.00 6.13
541 543 0.313987 CAGAAAAGTCAAACCCGGCC 59.686 55.000 0.00 0.00 0.00 6.13
542 544 0.185175 AGAAAAGTCAAACCCGGCCT 59.815 50.000 0.00 0.00 0.00 5.19
543 545 1.037493 GAAAAGTCAAACCCGGCCTT 58.963 50.000 0.00 0.00 0.00 4.35
544 546 2.158579 AGAAAAGTCAAACCCGGCCTTA 60.159 45.455 0.00 0.00 0.00 2.69
545 547 2.597578 AAAGTCAAACCCGGCCTTAT 57.402 45.000 0.00 0.00 0.00 1.73
546 548 3.724732 AAAGTCAAACCCGGCCTTATA 57.275 42.857 0.00 0.00 0.00 0.98
547 549 3.945640 AAGTCAAACCCGGCCTTATAT 57.054 42.857 0.00 0.00 0.00 0.86
548 550 3.945640 AGTCAAACCCGGCCTTATATT 57.054 42.857 0.00 0.00 0.00 1.28
549 551 4.245251 AGTCAAACCCGGCCTTATATTT 57.755 40.909 0.00 0.00 0.00 1.40
550 552 4.606210 AGTCAAACCCGGCCTTATATTTT 58.394 39.130 0.00 0.00 0.00 1.82
551 553 4.401202 AGTCAAACCCGGCCTTATATTTTG 59.599 41.667 0.00 2.18 0.00 2.44
552 554 3.702045 TCAAACCCGGCCTTATATTTTGG 59.298 43.478 0.00 0.00 0.00 3.28
553 555 2.375014 ACCCGGCCTTATATTTTGGG 57.625 50.000 0.00 2.61 41.06 4.12
554 556 1.854280 ACCCGGCCTTATATTTTGGGA 59.146 47.619 12.92 0.00 38.56 4.37
555 557 2.245287 ACCCGGCCTTATATTTTGGGAA 59.755 45.455 12.92 0.00 38.56 3.97
556 558 2.890945 CCCGGCCTTATATTTTGGGAAG 59.109 50.000 0.00 0.00 37.35 3.46
557 559 2.890945 CCGGCCTTATATTTTGGGAAGG 59.109 50.000 0.00 0.00 41.26 3.46
558 560 3.435890 CCGGCCTTATATTTTGGGAAGGA 60.436 47.826 0.00 0.00 40.88 3.36
559 561 3.821033 CGGCCTTATATTTTGGGAAGGAG 59.179 47.826 0.00 0.00 40.88 3.69
560 562 4.152647 GGCCTTATATTTTGGGAAGGAGG 58.847 47.826 0.00 0.00 40.88 4.30
565 567 7.639534 GCCTTATATTTTGGGAAGGAGGAGTAA 60.640 40.741 3.71 0.00 40.88 2.24
607 609 7.442062 CAGAAAAGGTAAAAATCAAAGGCATGT 59.558 33.333 0.00 0.00 0.00 3.21
625 627 4.848299 GCATGTGAAAGAACTAAAGAAGCG 59.152 41.667 0.00 0.00 0.00 4.68
626 628 5.560953 GCATGTGAAAGAACTAAAGAAGCGT 60.561 40.000 0.00 0.00 0.00 5.07
627 629 5.652744 TGTGAAAGAACTAAAGAAGCGTC 57.347 39.130 0.00 0.00 0.00 5.19
628 630 5.357257 TGTGAAAGAACTAAAGAAGCGTCT 58.643 37.500 0.00 0.00 34.72 4.18
629 631 5.234329 TGTGAAAGAACTAAAGAAGCGTCTG 59.766 40.000 1.94 0.00 33.05 3.51
630 632 5.234543 GTGAAAGAACTAAAGAAGCGTCTGT 59.765 40.000 1.94 0.00 33.05 3.41
631 633 6.420008 GTGAAAGAACTAAAGAAGCGTCTGTA 59.580 38.462 1.94 0.50 33.05 2.74
632 634 6.420008 TGAAAGAACTAAAGAAGCGTCTGTAC 59.580 38.462 1.94 0.00 33.05 2.90
633 635 5.708877 AGAACTAAAGAAGCGTCTGTACT 57.291 39.130 1.94 0.00 33.05 2.73
634 636 5.462405 AGAACTAAAGAAGCGTCTGTACTG 58.538 41.667 1.94 0.00 33.05 2.74
635 637 4.850347 ACTAAAGAAGCGTCTGTACTGT 57.150 40.909 1.94 0.00 33.05 3.55
636 638 5.197682 ACTAAAGAAGCGTCTGTACTGTT 57.802 39.130 1.94 0.00 33.05 3.16
637 639 4.982916 ACTAAAGAAGCGTCTGTACTGTTG 59.017 41.667 1.94 0.00 33.05 3.33
638 640 3.454371 AAGAAGCGTCTGTACTGTTGT 57.546 42.857 1.94 0.00 33.05 3.32
639 641 2.743938 AGAAGCGTCTGTACTGTTGTG 58.256 47.619 0.00 0.00 30.83 3.33
640 642 2.100916 AGAAGCGTCTGTACTGTTGTGT 59.899 45.455 0.00 0.00 30.83 3.72
641 643 2.596904 AGCGTCTGTACTGTTGTGTT 57.403 45.000 0.00 0.00 0.00 3.32
642 644 2.470821 AGCGTCTGTACTGTTGTGTTC 58.529 47.619 0.00 0.00 0.00 3.18
643 645 2.159156 AGCGTCTGTACTGTTGTGTTCA 60.159 45.455 0.00 0.00 0.00 3.18
644 646 2.605818 GCGTCTGTACTGTTGTGTTCAA 59.394 45.455 0.00 0.00 0.00 2.69
645 647 3.062909 GCGTCTGTACTGTTGTGTTCAAA 59.937 43.478 0.00 0.00 35.20 2.69
646 648 4.436317 GCGTCTGTACTGTTGTGTTCAAAA 60.436 41.667 0.00 0.00 35.20 2.44
647 649 5.623335 CGTCTGTACTGTTGTGTTCAAAAA 58.377 37.500 0.00 0.00 35.20 1.94
674 676 7.875327 AAGCAAGGGAAACGTGTAAATATAT 57.125 32.000 0.00 0.00 0.00 0.86
795 797 1.075601 AGCTCTCCACCAATCCCAAA 58.924 50.000 0.00 0.00 0.00 3.28
820 822 1.123928 GTCATCCTACCCTGTCCCAG 58.876 60.000 0.00 0.00 0.00 4.45
899 906 1.986631 TCCCCAATTCTACCGACCAAA 59.013 47.619 0.00 0.00 0.00 3.28
1020 1053 2.574955 GGATCAGCGGGCGAGGTAT 61.575 63.158 0.00 0.00 0.00 2.73
1062 1095 0.320697 GCGGCGGGAATCCTAACTAT 59.679 55.000 9.78 0.00 0.00 2.12
1063 1096 1.270678 GCGGCGGGAATCCTAACTATT 60.271 52.381 9.78 0.00 0.00 1.73
1106 1139 1.077716 AGCAGCATCAGCATCAGCA 60.078 52.632 0.00 0.00 45.49 4.41
1108 1141 1.356979 CAGCATCAGCATCAGCAGC 59.643 57.895 0.00 0.00 45.49 5.25
1257 1317 3.397439 AGAGCCAGCGAGCACCAT 61.397 61.111 3.80 0.00 34.23 3.55
1377 1437 4.137116 TGATTCGTTGACTTGGGATAGG 57.863 45.455 0.00 0.00 0.00 2.57
1477 1540 1.082496 GCTGCGAGTGTTTCTGTGC 60.082 57.895 0.00 0.00 0.00 4.57
1507 1570 1.765314 ACTAGTGCTGCTGGATAAGGG 59.235 52.381 0.00 0.00 0.00 3.95
1508 1571 2.042464 CTAGTGCTGCTGGATAAGGGA 58.958 52.381 0.00 0.00 0.00 4.20
1534 1597 7.792374 TTACAGTCTCCAAGCATGAATTATC 57.208 36.000 0.00 0.00 0.00 1.75
1539 1602 7.171167 CAGTCTCCAAGCATGAATTATCTGTAG 59.829 40.741 0.00 0.00 0.00 2.74
1554 1631 4.715130 TAGAGCGTGCCCCTGGGT 62.715 66.667 12.71 0.00 37.65 4.51
1575 1652 5.550403 GGGTATTCTGTATTAATCCCTGGGA 59.450 44.000 19.69 19.69 35.55 4.37
1582 1659 0.254747 TTAATCCCTGGGACCAAGCG 59.745 55.000 19.82 0.00 32.98 4.68
1599 1676 0.106708 GCGTGGCATCTTCTGGGATA 59.893 55.000 0.00 0.00 0.00 2.59
1600 1677 1.875576 GCGTGGCATCTTCTGGGATAG 60.876 57.143 0.00 0.00 0.00 2.08
1601 1678 1.414181 CGTGGCATCTTCTGGGATAGT 59.586 52.381 0.00 0.00 0.00 2.12
1602 1679 2.804572 CGTGGCATCTTCTGGGATAGTG 60.805 54.545 0.00 0.00 0.00 2.74
1603 1680 1.141657 TGGCATCTTCTGGGATAGTGC 59.858 52.381 0.00 0.00 0.00 4.40
1604 1681 1.141657 GGCATCTTCTGGGATAGTGCA 59.858 52.381 0.00 0.00 0.00 4.57
1605 1682 2.492012 GCATCTTCTGGGATAGTGCAG 58.508 52.381 0.00 0.00 0.00 4.41
1606 1683 2.103771 GCATCTTCTGGGATAGTGCAGA 59.896 50.000 0.00 0.00 0.00 4.26
1607 1684 3.803021 GCATCTTCTGGGATAGTGCAGAG 60.803 52.174 0.00 0.00 0.00 3.35
1608 1685 1.759445 TCTTCTGGGATAGTGCAGAGC 59.241 52.381 0.00 0.00 0.00 4.09
1609 1686 0.833287 TTCTGGGATAGTGCAGAGCC 59.167 55.000 0.00 0.00 0.00 4.70
1610 1687 0.031716 TCTGGGATAGTGCAGAGCCT 60.032 55.000 3.03 0.00 0.00 4.58
1611 1688 0.106335 CTGGGATAGTGCAGAGCCTG 59.894 60.000 3.03 0.00 34.12 4.85
1628 1705 2.886391 GCCTGTCTCTGGGAGTAGTTCT 60.886 54.545 0.00 0.00 0.00 3.01
1670 1748 1.961793 AACTGCCGAGCAACTAACAA 58.038 45.000 0.35 0.00 38.41 2.83
1693 1771 2.430956 CGTGCTCGTGTGCATATTTTC 58.569 47.619 0.00 0.00 45.23 2.29
1704 1782 5.465390 GTGTGCATATTTTCGAGGCTATGTA 59.535 40.000 0.00 5.14 0.00 2.29
1767 1845 2.863704 GCATTGGGCGAATTAATGGCTC 60.864 50.000 10.52 7.88 33.54 4.70
1810 1889 3.317149 CCACATGGATGATTGATGTGTCC 59.683 47.826 13.42 0.00 43.60 4.02
1823 1902 8.859090 TGATTGATGTGTCCAATTAGTTTCTTT 58.141 29.630 0.00 0.00 34.67 2.52
1868 1947 3.255888 GGAACAGAGGGAAAATGTTGGAC 59.744 47.826 0.00 0.00 37.29 4.02
1881 1960 9.020731 GGAAAATGTTGGACTTTTAGAGGATAA 57.979 33.333 0.00 0.00 0.00 1.75
2040 2119 6.920569 TGTTTTCTTCTCTTTGTGTCTACC 57.079 37.500 0.00 0.00 0.00 3.18
2042 2121 4.931661 TTCTTCTCTTTGTGTCTACCGT 57.068 40.909 0.00 0.00 0.00 4.83
2049 2128 0.319211 TTGTGTCTACCGTTCCTGCG 60.319 55.000 0.00 0.00 0.00 5.18
2127 2208 4.159506 GTGGTTGGAAAGGCATATAAAGCA 59.840 41.667 3.37 0.00 0.00 3.91
2237 2318 4.222124 ACCACTGTTGAACTGTTCTTCT 57.778 40.909 20.18 0.00 0.00 2.85
2363 2455 6.515531 CGCTACCAGACCGAGGTATTTTTATA 60.516 42.308 0.00 0.00 40.62 0.98
2460 2552 7.812690 TGCATGATCTATTGTCTTGCTTTAT 57.187 32.000 0.00 0.00 43.32 1.40
2642 2747 1.831106 TGGAGAACATGCCAGTCGTAT 59.169 47.619 0.00 0.00 0.00 3.06
2682 2787 0.988678 GGGAGGCTACCCTGTTCCAT 60.989 60.000 3.63 0.00 45.90 3.41
2706 2811 9.994432 CATTTTATGTTCTACAGTTCAGATTCC 57.006 33.333 0.00 0.00 0.00 3.01
2716 2821 8.154203 TCTACAGTTCAGATTCCACACATAAAA 58.846 33.333 0.00 0.00 0.00 1.52
2783 2888 1.331756 GATTTGAATCTCGCATGCGGT 59.668 47.619 37.18 21.79 40.25 5.68
2784 2889 0.447406 TTTGAATCTCGCATGCGGTG 59.553 50.000 37.18 28.63 40.25 4.94
2843 2948 1.372582 ACAGCACAATCCATGTAGCG 58.627 50.000 0.00 0.00 41.46 4.26
2883 2988 6.369059 AGAATGTTCAACTTGTCAAGACTG 57.631 37.500 19.53 14.56 0.00 3.51
2884 2989 6.115446 AGAATGTTCAACTTGTCAAGACTGA 58.885 36.000 19.53 16.41 0.00 3.41
2893 2998 5.788450 ACTTGTCAAGACTGATCTACCTTG 58.212 41.667 19.53 12.29 37.82 3.61
3261 3382 5.888982 TCAAGGTTTCTTCTGGACTAGTT 57.111 39.130 0.00 0.00 0.00 2.24
3347 3468 7.345192 ACGATCAAACATAAGCATATTCGAAC 58.655 34.615 0.00 0.00 0.00 3.95
3356 3477 9.144747 ACATAAGCATATTCGAACTGATCATAC 57.855 33.333 12.46 0.00 0.00 2.39
3742 3949 4.830046 TGGCATTCTACCACTGCTTTTTAA 59.170 37.500 0.00 0.00 36.18 1.52
3745 3952 6.704050 GGCATTCTACCACTGCTTTTTAAAAA 59.296 34.615 12.62 12.62 36.18 1.94
3856 4063 7.977789 TGTTTGTTGCTAGTTCATGAGATAA 57.022 32.000 0.00 0.00 0.00 1.75
3857 4064 8.032952 TGTTTGTTGCTAGTTCATGAGATAAG 57.967 34.615 0.00 0.00 0.00 1.73
3908 4115 8.646900 ACTGGATTAAGAAATTGCCTTTTTACA 58.353 29.630 0.00 0.00 0.00 2.41
3917 4124 7.398332 AGAAATTGCCTTTTTACATGGAGAGAT 59.602 33.333 0.00 0.00 0.00 2.75
3919 4126 6.916360 TTGCCTTTTTACATGGAGAGATTT 57.084 33.333 0.00 0.00 0.00 2.17
3926 4133 6.908870 TTTACATGGAGAGATTTGATGTCG 57.091 37.500 0.00 0.00 0.00 4.35
3971 4317 3.387397 GCATTTGATCATGCCCTTAAGC 58.613 45.455 9.72 0.00 43.38 3.09
4092 4438 0.684535 TGCCCCTTTTTAGCTTTGCC 59.315 50.000 0.00 0.00 0.00 4.52
4122 4468 1.467734 GCACTGCTGAAAGACATGAGG 59.532 52.381 0.00 0.00 34.07 3.86
4485 4832 1.293498 GTCCGCTGACATGACCTGT 59.707 57.895 0.00 0.00 41.37 4.00
4525 4926 0.975135 ATGCTCATCGCTGCCTCTAT 59.025 50.000 0.00 0.00 40.11 1.98
4717 5118 3.952323 GGCTTAAGGGTAACTTCCAATCC 59.048 47.826 4.29 0.00 40.64 3.01
4822 5251 4.938575 TGTGTTGTATCCCTGGGTAAAT 57.061 40.909 13.56 1.23 0.00 1.40
4846 5275 5.417811 ACTCTCACAAAGCTCACATAGATG 58.582 41.667 0.00 0.00 0.00 2.90
4961 6079 9.981114 CTTCAGAAGGTTAATTTAAATTGGTGT 57.019 29.630 21.19 5.02 0.00 4.16
5642 6782 7.986889 GGACATTATTCTGTGGCCATTTATTTT 59.013 33.333 9.72 0.00 43.32 1.82
5681 6835 7.065923 CCTTTCTGAACTGTAGGCCTTATTTAC 59.934 40.741 12.58 2.24 0.00 2.01
5803 7108 3.466836 CCACTTGTGTAGAAGTCAGCAA 58.533 45.455 0.00 0.00 33.75 3.91
6055 7984 0.323451 GGTGGGTCATTTGGTCTCCC 60.323 60.000 0.00 0.00 38.68 4.30
6201 8215 7.925483 GGTATGCAGTTTAATGAATTGGCATTA 59.075 33.333 0.00 0.00 39.15 1.90
6202 8216 8.971321 GTATGCAGTTTAATGAATTGGCATTAG 58.029 33.333 0.00 0.00 40.62 1.73
6217 8231 6.656632 TGGCATTAGTATTTTGGTGTTCAA 57.343 33.333 0.00 0.00 0.00 2.69
6232 8246 4.870991 GGTGTTCAAGCTATGACTAGTTCC 59.129 45.833 0.00 0.00 37.92 3.62
6394 8410 4.708726 AGCATCTCTTTTAACATGGTGC 57.291 40.909 0.00 0.00 0.00 5.01
6799 8817 6.694411 GCTCATCAGGTATGTTTGCTTATTTG 59.306 38.462 0.00 0.00 36.89 2.32
6842 8872 2.159179 TGTAGTGCATCTGCCTCCTA 57.841 50.000 0.00 0.00 41.18 2.94
6925 8956 8.567104 TGTATGTAGAACGTCTTAGTGTGTTTA 58.433 33.333 0.00 0.00 0.00 2.01
7038 9071 6.699575 AATAAGGATTGTGGCTGTTGATAC 57.300 37.500 0.00 0.00 0.00 2.24
7087 9120 5.543507 AGCAGATATAGGGACTGAAACAG 57.456 43.478 0.00 0.00 41.52 3.16
7108 9142 4.623167 CAGAGGTCACGTTCTTCATAGTTG 59.377 45.833 0.00 0.00 0.00 3.16
7164 9198 2.484264 GAGTACTGGTTCAACATGCACC 59.516 50.000 0.00 0.00 34.15 5.01
7179 9213 5.123227 ACATGCACCTGTACGCTATAAAAT 58.877 37.500 0.00 0.00 0.00 1.82
7180 9214 6.285224 ACATGCACCTGTACGCTATAAAATA 58.715 36.000 0.00 0.00 0.00 1.40
7181 9215 6.423905 ACATGCACCTGTACGCTATAAAATAG 59.576 38.462 0.00 0.00 0.00 1.73
7182 9216 5.909477 TGCACCTGTACGCTATAAAATAGT 58.091 37.500 0.00 0.00 0.00 2.12
7183 9217 7.041635 TGCACCTGTACGCTATAAAATAGTA 57.958 36.000 0.00 0.00 0.00 1.82
7184 9218 6.919662 TGCACCTGTACGCTATAAAATAGTAC 59.080 38.462 0.00 0.00 38.40 2.73
7185 9219 7.144000 GCACCTGTACGCTATAAAATAGTACT 58.856 38.462 0.00 0.00 38.63 2.73
7186 9220 7.325579 GCACCTGTACGCTATAAAATAGTACTC 59.674 40.741 0.00 0.00 38.63 2.59
7187 9221 7.806960 CACCTGTACGCTATAAAATAGTACTCC 59.193 40.741 0.00 0.00 38.63 3.85
7188 9222 7.040132 ACCTGTACGCTATAAAATAGTACTCCC 60.040 40.741 0.00 0.00 38.63 4.30
7189 9223 7.176340 CCTGTACGCTATAAAATAGTACTCCCT 59.824 40.741 0.00 0.00 38.63 4.20
7190 9224 8.103948 TGTACGCTATAAAATAGTACTCCCTC 57.896 38.462 0.00 0.00 38.63 4.30
7191 9225 6.587206 ACGCTATAAAATAGTACTCCCTCC 57.413 41.667 0.00 0.00 0.00 4.30
7192 9226 5.182760 ACGCTATAAAATAGTACTCCCTCCG 59.817 44.000 0.00 0.00 0.00 4.63
7193 9227 5.182760 CGCTATAAAATAGTACTCCCTCCGT 59.817 44.000 0.00 0.00 0.00 4.69
7194 9228 6.372659 CGCTATAAAATAGTACTCCCTCCGTA 59.627 42.308 0.00 0.00 0.00 4.02
7195 9229 7.094634 CGCTATAAAATAGTACTCCCTCCGTAA 60.095 40.741 0.00 0.00 0.00 3.18
7196 9230 8.579863 GCTATAAAATAGTACTCCCTCCGTAAA 58.420 37.037 0.00 0.00 0.00 2.01
7197 9231 9.905171 CTATAAAATAGTACTCCCTCCGTAAAC 57.095 37.037 0.00 0.00 0.00 2.01
7198 9232 6.610075 AAAATAGTACTCCCTCCGTAAACA 57.390 37.500 0.00 0.00 0.00 2.83
7199 9233 6.610075 AAATAGTACTCCCTCCGTAAACAA 57.390 37.500 0.00 0.00 0.00 2.83
7200 9234 6.610075 AATAGTACTCCCTCCGTAAACAAA 57.390 37.500 0.00 0.00 0.00 2.83
7201 9235 6.803366 ATAGTACTCCCTCCGTAAACAAAT 57.197 37.500 0.00 0.00 0.00 2.32
7202 9236 7.902920 ATAGTACTCCCTCCGTAAACAAATA 57.097 36.000 0.00 0.00 0.00 1.40
7203 9237 6.803366 AGTACTCCCTCCGTAAACAAATAT 57.197 37.500 0.00 0.00 0.00 1.28
7204 9238 7.902920 AGTACTCCCTCCGTAAACAAATATA 57.097 36.000 0.00 0.00 0.00 0.86
7205 9239 8.310122 AGTACTCCCTCCGTAAACAAATATAA 57.690 34.615 0.00 0.00 0.00 0.98
7206 9240 8.419442 AGTACTCCCTCCGTAAACAAATATAAG 58.581 37.037 0.00 0.00 0.00 1.73
7207 9241 7.427989 ACTCCCTCCGTAAACAAATATAAGA 57.572 36.000 0.00 0.00 0.00 2.10
7208 9242 7.498443 ACTCCCTCCGTAAACAAATATAAGAG 58.502 38.462 0.00 0.00 0.00 2.85
7209 9243 6.285990 TCCCTCCGTAAACAAATATAAGAGC 58.714 40.000 0.00 0.00 0.00 4.09
7210 9244 5.176958 CCCTCCGTAAACAAATATAAGAGCG 59.823 44.000 0.00 0.00 0.00 5.03
7211 9245 5.751990 CCTCCGTAAACAAATATAAGAGCGT 59.248 40.000 0.00 0.00 0.00 5.07
7212 9246 6.257193 CCTCCGTAAACAAATATAAGAGCGTT 59.743 38.462 0.00 0.00 0.00 4.84
7213 9247 7.201582 CCTCCGTAAACAAATATAAGAGCGTTT 60.202 37.037 0.00 0.00 0.00 3.60
7214 9248 8.700722 TCCGTAAACAAATATAAGAGCGTTTA 57.299 30.769 0.00 0.00 0.00 2.01
7215 9249 8.810427 TCCGTAAACAAATATAAGAGCGTTTAG 58.190 33.333 0.00 0.00 31.53 1.85
7216 9250 8.810427 CCGTAAACAAATATAAGAGCGTTTAGA 58.190 33.333 0.00 0.00 31.53 2.10
7221 9255 9.601217 AACAAATATAAGAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 37.82 3.41
7228 9262 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
7229 9263 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
7230 9264 8.503458 AGAGCGTTTAGATCACTAAAGTAGTA 57.497 34.615 0.00 0.00 45.42 1.82
7231 9265 8.954350 AGAGCGTTTAGATCACTAAAGTAGTAA 58.046 33.333 0.00 0.00 45.42 2.24
7232 9266 9.733219 GAGCGTTTAGATCACTAAAGTAGTAAT 57.267 33.333 0.00 0.00 45.42 1.89
7233 9267 9.733219 AGCGTTTAGATCACTAAAGTAGTAATC 57.267 33.333 0.00 0.00 45.42 1.75
7234 9268 9.733219 GCGTTTAGATCACTAAAGTAGTAATCT 57.267 33.333 6.37 6.37 44.17 2.40
7262 9296 9.566432 AATGCTCTTATATTTCTTTACAGAGGG 57.434 33.333 0.00 0.00 0.00 4.30
7263 9297 8.319057 TGCTCTTATATTTCTTTACAGAGGGA 57.681 34.615 0.00 0.00 0.00 4.20
7264 9298 8.424918 TGCTCTTATATTTCTTTACAGAGGGAG 58.575 37.037 0.00 0.00 0.00 4.30
7337 9371 2.332063 ATTGGTGCGAATACTCCTGG 57.668 50.000 0.00 0.00 0.00 4.45
7355 9389 8.511604 ACTCCTGGTAATTTATCATTCTGTTG 57.488 34.615 0.00 0.00 0.00 3.33
7372 9406 6.588348 TCTGTTGTATCATACAGAATTGCG 57.412 37.500 0.00 0.00 45.60 4.85
7394 9428 6.252441 TGCGTTTTCTGAAGTATTTTGTGTTG 59.748 34.615 0.00 0.00 0.00 3.33
7400 9434 7.490962 TCTGAAGTATTTTGTGTTGTACTGG 57.509 36.000 0.00 0.00 0.00 4.00
7407 9444 9.181061 AGTATTTTGTGTTGTACTGGTTACTTT 57.819 29.630 0.00 0.00 0.00 2.66
7439 9476 6.525578 ACTGATCTCAATTGATGTTGCAAT 57.474 33.333 8.96 0.00 40.04 3.56
7514 9551 6.071278 ACCTTGCTCTACTTTATCGAGTTCTT 60.071 38.462 0.00 0.00 0.00 2.52
7678 9715 4.917385 TCATGGCTAAGCTAAAACTTCCA 58.083 39.130 0.00 0.00 30.61 3.53
7699 9738 7.320443 TCCAATCACTGACAATAGTTAATGC 57.680 36.000 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.338146 TCAAACGACATATCTTTCCCTACAG 58.662 40.000 0.00 0.00 0.00 2.74
1 2 6.288941 TCAAACGACATATCTTTCCCTACA 57.711 37.500 0.00 0.00 0.00 2.74
2 3 7.787725 AATCAAACGACATATCTTTCCCTAC 57.212 36.000 0.00 0.00 0.00 3.18
44 45 3.914426 AACTTAGCATAGACCCAGTGG 57.086 47.619 0.63 0.63 37.80 4.00
128 130 3.818295 ACTAAGGCCACCATTGGTTTA 57.182 42.857 5.34 1.66 45.98 2.01
139 141 4.944177 AGGTTCTCTACTAACTAAGGCCA 58.056 43.478 5.01 0.00 0.00 5.36
182 184 3.473923 AAAGGGTTTGCACCTGATTTG 57.526 42.857 0.00 0.00 43.65 2.32
232 234 8.437575 GGTCCATTAGAAATAGAAATAGGGTCA 58.562 37.037 0.00 0.00 0.00 4.02
272 274 7.860872 GCTAAAATTCTCGGAACAAGAGAAAAA 59.139 33.333 11.88 0.00 0.00 1.94
276 278 4.935808 GGCTAAAATTCTCGGAACAAGAGA 59.064 41.667 0.00 0.00 0.00 3.10
278 280 4.695455 CAGGCTAAAATTCTCGGAACAAGA 59.305 41.667 0.00 0.00 0.00 3.02
308 310 5.134509 CCTTATATTTTGGGAAGGAGGGAGT 59.865 44.000 0.00 0.00 40.88 3.85
309 311 5.635120 CCTTATATTTTGGGAAGGAGGGAG 58.365 45.833 0.00 0.00 40.88 4.30
310 312 4.141018 GCCTTATATTTTGGGAAGGAGGGA 60.141 45.833 3.71 0.00 40.88 4.20
311 313 4.152647 GCCTTATATTTTGGGAAGGAGGG 58.847 47.826 3.71 0.00 40.88 4.30
312 314 3.821033 CGCCTTATATTTTGGGAAGGAGG 59.179 47.826 3.71 0.00 40.88 4.30
313 315 3.253432 GCGCCTTATATTTTGGGAAGGAG 59.747 47.826 0.00 1.55 40.88 3.69
314 316 3.219281 GCGCCTTATATTTTGGGAAGGA 58.781 45.455 0.00 0.00 40.88 3.36
315 317 2.031157 CGCGCCTTATATTTTGGGAAGG 60.031 50.000 0.00 0.00 41.26 3.46
316 318 2.875933 TCGCGCCTTATATTTTGGGAAG 59.124 45.455 0.00 0.00 0.00 3.46
317 319 2.920524 TCGCGCCTTATATTTTGGGAA 58.079 42.857 0.00 0.00 0.00 3.97
318 320 2.623878 TCGCGCCTTATATTTTGGGA 57.376 45.000 0.00 0.00 0.00 4.37
319 321 3.252215 TCAATCGCGCCTTATATTTTGGG 59.748 43.478 0.00 0.00 0.00 4.12
320 322 4.024048 AGTCAATCGCGCCTTATATTTTGG 60.024 41.667 0.00 0.00 0.00 3.28
321 323 5.095691 AGTCAATCGCGCCTTATATTTTG 57.904 39.130 0.00 0.00 0.00 2.44
322 324 5.751243 AAGTCAATCGCGCCTTATATTTT 57.249 34.783 0.00 0.00 0.00 1.82
323 325 5.751243 AAAGTCAATCGCGCCTTATATTT 57.249 34.783 0.00 0.00 0.00 1.40
324 326 5.751243 AAAAGTCAATCGCGCCTTATATT 57.249 34.783 0.00 0.00 0.00 1.28
325 327 5.751243 AAAAAGTCAATCGCGCCTTATAT 57.249 34.783 0.00 0.00 0.00 0.86
326 328 5.276489 CGTAAAAAGTCAATCGCGCCTTATA 60.276 40.000 0.00 0.00 0.00 0.98
327 329 4.493545 CGTAAAAAGTCAATCGCGCCTTAT 60.494 41.667 0.00 0.00 0.00 1.73
328 330 3.181528 CGTAAAAAGTCAATCGCGCCTTA 60.182 43.478 0.00 0.00 0.00 2.69
329 331 2.412325 CGTAAAAAGTCAATCGCGCCTT 60.412 45.455 0.00 0.00 0.00 4.35
330 332 1.127951 CGTAAAAAGTCAATCGCGCCT 59.872 47.619 0.00 0.00 0.00 5.52
331 333 1.520368 CGTAAAAAGTCAATCGCGCC 58.480 50.000 0.00 0.00 0.00 6.53
332 334 1.136169 ACCGTAAAAAGTCAATCGCGC 60.136 47.619 0.00 0.00 0.00 6.86
333 335 2.410730 AGACCGTAAAAAGTCAATCGCG 59.589 45.455 0.00 0.00 35.38 5.87
334 336 4.400036 AAGACCGTAAAAAGTCAATCGC 57.600 40.909 0.00 0.00 35.38 4.58
335 337 5.981174 TCAAAGACCGTAAAAAGTCAATCG 58.019 37.500 0.00 0.00 35.38 3.34
336 338 6.305638 GCATCAAAGACCGTAAAAAGTCAATC 59.694 38.462 0.00 0.00 35.38 2.67
337 339 6.149633 GCATCAAAGACCGTAAAAAGTCAAT 58.850 36.000 0.00 0.00 35.38 2.57
338 340 5.066634 TGCATCAAAGACCGTAAAAAGTCAA 59.933 36.000 0.00 0.00 35.38 3.18
339 341 4.576873 TGCATCAAAGACCGTAAAAAGTCA 59.423 37.500 0.00 0.00 35.38 3.41
340 342 4.909880 GTGCATCAAAGACCGTAAAAAGTC 59.090 41.667 0.00 0.00 0.00 3.01
341 343 4.553938 CGTGCATCAAAGACCGTAAAAAGT 60.554 41.667 0.00 0.00 0.00 2.66
342 344 3.906008 CGTGCATCAAAGACCGTAAAAAG 59.094 43.478 0.00 0.00 0.00 2.27
343 345 3.560481 TCGTGCATCAAAGACCGTAAAAA 59.440 39.130 0.00 0.00 0.00 1.94
344 346 3.059461 GTCGTGCATCAAAGACCGTAAAA 60.059 43.478 0.00 0.00 0.00 1.52
345 347 2.477375 GTCGTGCATCAAAGACCGTAAA 59.523 45.455 0.00 0.00 0.00 2.01
346 348 2.063266 GTCGTGCATCAAAGACCGTAA 58.937 47.619 0.00 0.00 0.00 3.18
347 349 1.271379 AGTCGTGCATCAAAGACCGTA 59.729 47.619 0.00 0.00 34.41 4.02
348 350 0.033504 AGTCGTGCATCAAAGACCGT 59.966 50.000 0.00 0.00 34.41 4.83
349 351 1.148310 AAGTCGTGCATCAAAGACCG 58.852 50.000 0.00 0.00 34.41 4.79
350 352 2.548057 TCAAAGTCGTGCATCAAAGACC 59.452 45.455 0.00 0.00 34.41 3.85
351 353 3.545633 GTCAAAGTCGTGCATCAAAGAC 58.454 45.455 0.00 0.00 0.00 3.01
352 354 2.548057 GGTCAAAGTCGTGCATCAAAGA 59.452 45.455 0.00 0.00 0.00 2.52
353 355 2.290367 TGGTCAAAGTCGTGCATCAAAG 59.710 45.455 0.00 0.00 0.00 2.77
354 356 2.032799 GTGGTCAAAGTCGTGCATCAAA 59.967 45.455 0.00 0.00 0.00 2.69
355 357 1.601903 GTGGTCAAAGTCGTGCATCAA 59.398 47.619 0.00 0.00 0.00 2.57
356 358 1.202639 AGTGGTCAAAGTCGTGCATCA 60.203 47.619 0.00 0.00 0.00 3.07
357 359 1.512926 AGTGGTCAAAGTCGTGCATC 58.487 50.000 0.00 0.00 0.00 3.91
358 360 2.831685 TAGTGGTCAAAGTCGTGCAT 57.168 45.000 0.00 0.00 0.00 3.96
359 361 2.605837 TTAGTGGTCAAAGTCGTGCA 57.394 45.000 0.00 0.00 0.00 4.57
360 362 8.758633 ATATATATTAGTGGTCAAAGTCGTGC 57.241 34.615 0.00 0.00 0.00 5.34
392 394 9.311676 TGCCATTTATACATGTTCAATCCATAT 57.688 29.630 2.30 0.00 0.00 1.78
393 395 8.703378 TGCCATTTATACATGTTCAATCCATA 57.297 30.769 2.30 0.00 0.00 2.74
394 396 7.600231 TGCCATTTATACATGTTCAATCCAT 57.400 32.000 2.30 0.00 0.00 3.41
395 397 7.521910 CGATGCCATTTATACATGTTCAATCCA 60.522 37.037 2.30 1.08 0.00 3.41
396 398 6.803320 CGATGCCATTTATACATGTTCAATCC 59.197 38.462 2.30 0.00 0.00 3.01
397 399 7.362662 ACGATGCCATTTATACATGTTCAATC 58.637 34.615 2.30 0.00 0.00 2.67
398 400 7.275888 ACGATGCCATTTATACATGTTCAAT 57.724 32.000 2.30 0.00 0.00 2.57
399 401 6.510960 CGACGATGCCATTTATACATGTTCAA 60.511 38.462 2.30 0.00 0.00 2.69
400 402 5.050431 CGACGATGCCATTTATACATGTTCA 60.050 40.000 2.30 0.00 0.00 3.18
401 403 5.050363 ACGACGATGCCATTTATACATGTTC 60.050 40.000 2.30 0.00 0.00 3.18
402 404 4.814234 ACGACGATGCCATTTATACATGTT 59.186 37.500 2.30 0.00 0.00 2.71
403 405 4.377021 ACGACGATGCCATTTATACATGT 58.623 39.130 2.69 2.69 0.00 3.21
404 406 4.990543 ACGACGATGCCATTTATACATG 57.009 40.909 0.00 0.00 0.00 3.21
405 407 7.172532 ACAAATACGACGATGCCATTTATACAT 59.827 33.333 0.00 0.00 0.00 2.29
406 408 6.480651 ACAAATACGACGATGCCATTTATACA 59.519 34.615 0.00 0.00 0.00 2.29
407 409 6.884187 ACAAATACGACGATGCCATTTATAC 58.116 36.000 0.00 0.00 0.00 1.47
408 410 6.926826 AGACAAATACGACGATGCCATTTATA 59.073 34.615 0.00 0.00 0.00 0.98
409 411 5.758296 AGACAAATACGACGATGCCATTTAT 59.242 36.000 0.00 0.00 0.00 1.40
410 412 5.113383 AGACAAATACGACGATGCCATTTA 58.887 37.500 0.00 0.00 0.00 1.40
411 413 3.938963 AGACAAATACGACGATGCCATTT 59.061 39.130 0.00 0.00 0.00 2.32
412 414 3.531538 AGACAAATACGACGATGCCATT 58.468 40.909 0.00 0.00 0.00 3.16
413 415 3.179443 AGACAAATACGACGATGCCAT 57.821 42.857 0.00 0.00 0.00 4.40
414 416 2.665649 AGACAAATACGACGATGCCA 57.334 45.000 0.00 0.00 0.00 4.92
415 417 2.536928 GCAAGACAAATACGACGATGCC 60.537 50.000 0.00 0.00 0.00 4.40
416 418 2.093625 TGCAAGACAAATACGACGATGC 59.906 45.455 0.00 0.00 0.00 3.91
417 419 3.989705 TGCAAGACAAATACGACGATG 57.010 42.857 0.00 0.00 0.00 3.84
486 488 7.596248 GCACAACTTTGACTATGATTTTCATGT 59.404 33.333 0.30 0.00 37.70 3.21
487 489 7.062605 GGCACAACTTTGACTATGATTTTCATG 59.937 37.037 0.30 0.00 37.70 3.07
488 490 7.092716 GGCACAACTTTGACTATGATTTTCAT 58.907 34.615 0.00 0.00 40.72 2.57
489 491 6.040278 TGGCACAACTTTGACTATGATTTTCA 59.960 34.615 0.00 0.00 31.92 2.69
490 492 6.363357 GTGGCACAACTTTGACTATGATTTTC 59.637 38.462 13.86 0.00 44.16 2.29
491 493 6.215845 GTGGCACAACTTTGACTATGATTTT 58.784 36.000 13.86 0.00 44.16 1.82
492 494 5.562696 CGTGGCACAACTTTGACTATGATTT 60.563 40.000 19.09 0.00 44.16 2.17
493 495 4.083324 CGTGGCACAACTTTGACTATGATT 60.083 41.667 19.09 0.00 44.16 2.57
494 496 3.436704 CGTGGCACAACTTTGACTATGAT 59.563 43.478 19.09 0.00 44.16 2.45
495 497 2.805671 CGTGGCACAACTTTGACTATGA 59.194 45.455 19.09 0.00 44.16 2.15
496 498 2.805671 TCGTGGCACAACTTTGACTATG 59.194 45.455 19.09 0.00 44.16 2.23
497 499 3.120321 TCGTGGCACAACTTTGACTAT 57.880 42.857 19.09 0.00 44.16 2.12
498 500 2.605837 TCGTGGCACAACTTTGACTA 57.394 45.000 19.09 0.00 44.16 2.59
499 501 1.670811 CTTCGTGGCACAACTTTGACT 59.329 47.619 19.09 0.00 44.16 3.41
500 502 1.668751 TCTTCGTGGCACAACTTTGAC 59.331 47.619 19.09 0.00 44.16 3.18
501 503 1.668751 GTCTTCGTGGCACAACTTTGA 59.331 47.619 19.09 2.26 44.16 2.69
502 504 1.268539 GGTCTTCGTGGCACAACTTTG 60.269 52.381 19.09 0.00 44.16 2.77
503 505 1.021968 GGTCTTCGTGGCACAACTTT 58.978 50.000 19.09 0.00 44.16 2.66
504 506 0.107410 TGGTCTTCGTGGCACAACTT 60.107 50.000 19.09 0.00 44.16 2.66
505 507 0.532862 CTGGTCTTCGTGGCACAACT 60.533 55.000 19.09 0.00 44.16 3.16
506 508 0.531974 TCTGGTCTTCGTGGCACAAC 60.532 55.000 19.09 9.40 44.16 3.32
507 509 0.179234 TTCTGGTCTTCGTGGCACAA 59.821 50.000 19.09 10.03 44.16 3.33
508 510 0.179234 TTTCTGGTCTTCGTGGCACA 59.821 50.000 19.09 1.83 0.00 4.57
509 511 1.264288 CTTTTCTGGTCTTCGTGGCAC 59.736 52.381 7.79 7.79 0.00 5.01
510 512 1.134220 ACTTTTCTGGTCTTCGTGGCA 60.134 47.619 0.00 0.00 0.00 4.92
511 513 1.531578 GACTTTTCTGGTCTTCGTGGC 59.468 52.381 0.00 0.00 0.00 5.01
512 514 2.833794 TGACTTTTCTGGTCTTCGTGG 58.166 47.619 0.00 0.00 35.04 4.94
513 515 4.495844 GGTTTGACTTTTCTGGTCTTCGTG 60.496 45.833 0.00 0.00 35.04 4.35
514 516 3.626217 GGTTTGACTTTTCTGGTCTTCGT 59.374 43.478 0.00 0.00 35.04 3.85
515 517 3.003378 GGGTTTGACTTTTCTGGTCTTCG 59.997 47.826 0.00 0.00 35.04 3.79
516 518 3.003378 CGGGTTTGACTTTTCTGGTCTTC 59.997 47.826 0.00 0.00 35.04 2.87
517 519 2.949644 CGGGTTTGACTTTTCTGGTCTT 59.050 45.455 0.00 0.00 35.04 3.01
518 520 2.572290 CGGGTTTGACTTTTCTGGTCT 58.428 47.619 0.00 0.00 35.04 3.85
519 521 1.607148 CCGGGTTTGACTTTTCTGGTC 59.393 52.381 0.00 0.00 0.00 4.02
520 522 1.687563 CCGGGTTTGACTTTTCTGGT 58.312 50.000 0.00 0.00 0.00 4.00
521 523 0.313987 GCCGGGTTTGACTTTTCTGG 59.686 55.000 2.18 0.00 0.00 3.86
522 524 0.313987 GGCCGGGTTTGACTTTTCTG 59.686 55.000 2.18 0.00 0.00 3.02
523 525 0.185175 AGGCCGGGTTTGACTTTTCT 59.815 50.000 2.18 0.00 0.00 2.52
524 526 1.037493 AAGGCCGGGTTTGACTTTTC 58.963 50.000 2.18 0.00 0.00 2.29
525 527 2.368311 TAAGGCCGGGTTTGACTTTT 57.632 45.000 2.18 0.00 0.00 2.27
526 528 2.597578 ATAAGGCCGGGTTTGACTTT 57.402 45.000 2.18 0.00 0.00 2.66
527 529 3.945640 ATATAAGGCCGGGTTTGACTT 57.054 42.857 2.18 0.00 0.00 3.01
528 530 3.945640 AATATAAGGCCGGGTTTGACT 57.054 42.857 2.18 0.00 0.00 3.41
529 531 4.440940 CCAAAATATAAGGCCGGGTTTGAC 60.441 45.833 2.18 0.00 0.00 3.18
530 532 3.702045 CCAAAATATAAGGCCGGGTTTGA 59.298 43.478 2.18 0.00 0.00 2.69
531 533 3.181470 CCCAAAATATAAGGCCGGGTTTG 60.181 47.826 2.18 3.90 0.00 2.93
532 534 3.035363 CCCAAAATATAAGGCCGGGTTT 58.965 45.455 2.18 0.00 0.00 3.27
533 535 2.245287 TCCCAAAATATAAGGCCGGGTT 59.755 45.455 2.18 0.00 33.70 4.11
534 536 1.854280 TCCCAAAATATAAGGCCGGGT 59.146 47.619 2.18 0.00 33.70 5.28
535 537 2.668144 TCCCAAAATATAAGGCCGGG 57.332 50.000 2.18 0.00 0.00 5.73
536 538 2.890945 CCTTCCCAAAATATAAGGCCGG 59.109 50.000 0.00 0.00 32.66 6.13
537 539 3.821033 CTCCTTCCCAAAATATAAGGCCG 59.179 47.826 0.00 0.00 38.70 6.13
538 540 4.141018 TCCTCCTTCCCAAAATATAAGGCC 60.141 45.833 0.00 0.00 38.70 5.19
539 541 5.061721 TCCTCCTTCCCAAAATATAAGGC 57.938 43.478 0.00 0.00 38.70 4.35
540 542 6.267492 ACTCCTCCTTCCCAAAATATAAGG 57.733 41.667 0.00 0.00 39.93 2.69
543 545 8.887393 GGTATTACTCCTCCTTCCCAAAATATA 58.113 37.037 0.00 0.00 0.00 0.86
544 546 7.352522 TGGTATTACTCCTCCTTCCCAAAATAT 59.647 37.037 0.00 0.00 0.00 1.28
545 547 6.679303 TGGTATTACTCCTCCTTCCCAAAATA 59.321 38.462 0.00 0.00 0.00 1.40
546 548 5.494706 TGGTATTACTCCTCCTTCCCAAAAT 59.505 40.000 0.00 0.00 0.00 1.82
547 549 4.853276 TGGTATTACTCCTCCTTCCCAAAA 59.147 41.667 0.00 0.00 0.00 2.44
548 550 4.440808 TGGTATTACTCCTCCTTCCCAAA 58.559 43.478 0.00 0.00 0.00 3.28
549 551 4.037927 CTGGTATTACTCCTCCTTCCCAA 58.962 47.826 0.00 0.00 0.00 4.12
550 552 3.654273 CTGGTATTACTCCTCCTTCCCA 58.346 50.000 0.00 0.00 0.00 4.37
551 553 2.369203 GCTGGTATTACTCCTCCTTCCC 59.631 54.545 0.00 0.00 0.00 3.97
552 554 3.039011 TGCTGGTATTACTCCTCCTTCC 58.961 50.000 0.00 0.00 0.00 3.46
553 555 3.707102 AGTGCTGGTATTACTCCTCCTTC 59.293 47.826 0.00 0.00 0.00 3.46
554 556 3.725634 AGTGCTGGTATTACTCCTCCTT 58.274 45.455 0.00 0.00 0.00 3.36
555 557 3.406512 AGTGCTGGTATTACTCCTCCT 57.593 47.619 0.00 0.00 0.00 3.69
556 558 5.609533 TTTAGTGCTGGTATTACTCCTCC 57.390 43.478 0.00 0.00 0.00 4.30
557 559 7.723324 TGTATTTAGTGCTGGTATTACTCCTC 58.277 38.462 0.00 0.00 0.00 3.71
558 560 7.563924 TCTGTATTTAGTGCTGGTATTACTCCT 59.436 37.037 0.00 0.00 0.00 3.69
559 561 7.723324 TCTGTATTTAGTGCTGGTATTACTCC 58.277 38.462 0.00 0.00 0.00 3.85
560 562 9.595823 TTTCTGTATTTAGTGCTGGTATTACTC 57.404 33.333 0.00 0.00 0.00 2.59
565 567 7.402862 ACCTTTTCTGTATTTAGTGCTGGTAT 58.597 34.615 0.00 0.00 0.00 2.73
597 599 6.738114 TCTTTAGTTCTTTCACATGCCTTTG 58.262 36.000 0.00 0.00 0.00 2.77
607 609 5.357257 ACAGACGCTTCTTTAGTTCTTTCA 58.643 37.500 0.00 0.00 0.00 2.69
647 649 4.722361 TTACACGTTTCCCTTGCTTTTT 57.278 36.364 0.00 0.00 0.00 1.94
648 650 4.722361 TTTACACGTTTCCCTTGCTTTT 57.278 36.364 0.00 0.00 0.00 2.27
649 651 4.929819 ATTTACACGTTTCCCTTGCTTT 57.070 36.364 0.00 0.00 0.00 3.51
650 652 7.554835 TCATATATTTACACGTTTCCCTTGCTT 59.445 33.333 0.00 0.00 0.00 3.91
651 653 7.051623 TCATATATTTACACGTTTCCCTTGCT 58.948 34.615 0.00 0.00 0.00 3.91
652 654 7.254227 TCATATATTTACACGTTTCCCTTGC 57.746 36.000 0.00 0.00 0.00 4.01
795 797 1.152525 AGGGTAGGATGACGGCGAT 60.153 57.895 16.62 0.00 0.00 4.58
833 835 2.602267 TCCCTCCGTTCTGGCGAA 60.602 61.111 0.00 0.00 37.80 4.70
1272 1332 2.106683 CCTCAAATCGGCGTCACCC 61.107 63.158 6.85 0.00 33.26 4.61
1274 1334 1.659098 CTTACCTCAAATCGGCGTCAC 59.341 52.381 6.85 0.00 0.00 3.67
1377 1437 4.446994 GGTCCTAACCAGTAGTACACAC 57.553 50.000 2.52 0.00 45.68 3.82
1463 1526 4.518217 CACTAAAAGCACAGAAACACTCG 58.482 43.478 0.00 0.00 0.00 4.18
1477 1540 3.681897 CAGCAGCACTAGTCCACTAAAAG 59.318 47.826 0.00 0.00 0.00 2.27
1507 1570 6.690194 ATTCATGCTTGGAGACTGTAATTC 57.310 37.500 0.00 0.00 0.00 2.17
1508 1571 8.757982 ATAATTCATGCTTGGAGACTGTAATT 57.242 30.769 0.00 0.00 0.00 1.40
1554 1631 6.154645 TGGTCCCAGGGATTAATACAGAATA 58.845 40.000 12.84 0.00 32.73 1.75
1575 1652 0.957395 CAGAAGATGCCACGCTTGGT 60.957 55.000 11.38 0.00 45.98 3.67
1582 1659 2.843701 CACTATCCCAGAAGATGCCAC 58.156 52.381 0.00 0.00 0.00 5.01
1605 1682 1.341581 ACTACTCCCAGAGACAGGCTC 60.342 57.143 0.00 0.00 44.29 4.70
1606 1683 0.707616 ACTACTCCCAGAGACAGGCT 59.292 55.000 0.00 0.00 33.32 4.58
1607 1684 1.478916 GAACTACTCCCAGAGACAGGC 59.521 57.143 0.00 0.00 33.32 4.85
1608 1685 2.757868 CAGAACTACTCCCAGAGACAGG 59.242 54.545 0.00 0.00 33.32 4.00
1609 1686 3.426615 ACAGAACTACTCCCAGAGACAG 58.573 50.000 0.00 0.00 33.32 3.51
1610 1687 3.527507 ACAGAACTACTCCCAGAGACA 57.472 47.619 0.00 0.00 33.32 3.41
1611 1688 4.875561 AAACAGAACTACTCCCAGAGAC 57.124 45.455 0.00 0.00 33.32 3.36
1617 1694 6.935208 ACAGTCAATTAAACAGAACTACTCCC 59.065 38.462 0.00 0.00 0.00 4.30
1657 1735 2.034076 GCACGTTTTGTTAGTTGCTCG 58.966 47.619 0.00 0.00 0.00 5.03
1704 1782 4.711846 TCAGTAGACAACATCCACAGCTAT 59.288 41.667 0.00 0.00 0.00 2.97
1721 1799 6.026947 GTAGCCCTACCACATATTCAGTAG 57.973 45.833 0.00 0.00 33.50 2.57
1767 1845 2.415893 GCCGTCATCATGGACCAAAAAG 60.416 50.000 0.00 0.00 34.24 2.27
1810 1889 9.430838 CTTAGCATCGATCAAAGAAACTAATTG 57.569 33.333 0.00 0.00 0.00 2.32
1823 1902 2.388735 ACAGGGACTTAGCATCGATCA 58.611 47.619 0.00 0.00 34.60 2.92
1986 2065 1.607148 CCTCACGTTTGGTTTCCTTCC 59.393 52.381 0.00 0.00 0.00 3.46
2001 2080 5.983540 AGAAAACATGAGATAGGACCTCAC 58.016 41.667 0.00 0.00 42.68 3.51
2127 2208 7.020827 TCCAGGATATTCACTTCAAAAGACT 57.979 36.000 0.00 0.00 0.00 3.24
2460 2552 8.460428 ACAACCAGAACGTTAAAAGAAAACATA 58.540 29.630 0.00 0.00 0.00 2.29
2631 2736 3.572632 AGTAGGAGTATACGACTGGCA 57.427 47.619 11.22 0.00 39.06 4.92
2642 2747 4.469945 CCCAAGAATGACCAAGTAGGAGTA 59.530 45.833 0.00 0.00 41.22 2.59
2682 2787 8.999431 GTGGAATCTGAACTGTAGAACATAAAA 58.001 33.333 0.00 0.00 0.00 1.52
2783 2888 7.148086 GGGCAAACTATATGATGAACTCAAACA 60.148 37.037 0.00 0.00 37.44 2.83
2784 2889 7.067494 AGGGCAAACTATATGATGAACTCAAAC 59.933 37.037 0.00 0.00 37.44 2.93
2883 2988 3.870633 ACTCGTCCAACAAGGTAGATC 57.129 47.619 0.00 0.00 39.02 2.75
2884 2989 5.733620 TTAACTCGTCCAACAAGGTAGAT 57.266 39.130 0.00 0.00 39.02 1.98
2893 2998 5.668558 ACTTGACATTTAACTCGTCCAAC 57.331 39.130 0.00 0.00 0.00 3.77
3179 3300 5.355350 AGGTATACAAAATGCAGCAGTCTTC 59.645 40.000 0.00 0.00 0.00 2.87
3261 3382 7.026562 CGAATTCCATGTGCAAAATAACAGTA 58.973 34.615 0.00 0.00 0.00 2.74
3347 3468 5.373812 AAAGGTAAGGGTGGTATGATCAG 57.626 43.478 0.09 0.00 0.00 2.90
3356 3477 6.911250 ATAAGAAACAAAAGGTAAGGGTGG 57.089 37.500 0.00 0.00 0.00 4.61
3700 3905 4.041444 TGCCATGCCAAAAAGGTTCTTTAT 59.959 37.500 0.00 0.00 40.61 1.40
3856 4063 5.723887 AGTCTGGAATGGAGAAGTGATAACT 59.276 40.000 0.00 0.00 0.00 2.24
3857 4064 5.983540 AGTCTGGAATGGAGAAGTGATAAC 58.016 41.667 0.00 0.00 0.00 1.89
3908 4115 4.743057 TGTCGACATCAAATCTCTCCAT 57.257 40.909 15.76 0.00 0.00 3.41
3926 4133 5.352569 CAGACCAACTTCAGGACATATTGTC 59.647 44.000 0.00 0.00 46.23 3.18
3988 4334 4.526970 CTGTAGGGCATGTAGGACAAATT 58.473 43.478 0.00 0.00 0.00 1.82
4027 4373 9.249053 TGCACCTTAAATGGATAACTAAATTGA 57.751 29.630 0.00 0.00 0.00 2.57
4067 4413 1.344438 AGCTAAAAAGGGGCAAACTGC 59.656 47.619 0.00 0.00 44.08 4.40
4122 4468 1.948144 GCAAACCCTCAAGAGAGCTCC 60.948 57.143 10.93 1.70 40.68 4.70
4329 4676 1.139498 TGCCACATCCCTTTCCCTCA 61.139 55.000 0.00 0.00 0.00 3.86
4485 4832 1.752498 GCCACAAAGATCATGCATGGA 59.248 47.619 25.97 13.36 0.00 3.41
4525 4926 2.685829 CCGCGCACCAGCAAATACA 61.686 57.895 8.75 0.00 42.27 2.29
4717 5118 1.834188 AGGCCCCTCACATTAAAACG 58.166 50.000 0.00 0.00 0.00 3.60
4822 5251 6.406288 CCATCTATGTGAGCTTTGTGAGAGTA 60.406 42.308 0.00 0.00 0.00 2.59
5013 6151 3.569194 TGTCTGCCTACAGGAAAAACA 57.431 42.857 0.00 0.00 44.59 2.83
5602 6742 6.438425 AGAATAATGTCCTTCAGCCAAAATGT 59.562 34.615 0.00 0.00 0.00 2.71
5603 6743 6.755141 CAGAATAATGTCCTTCAGCCAAAATG 59.245 38.462 0.00 0.00 0.00 2.32
5604 6744 6.438425 ACAGAATAATGTCCTTCAGCCAAAAT 59.562 34.615 0.00 0.00 0.00 1.82
5647 6787 7.201835 GCCTACAGTTCAGAAAGGTATAGTAC 58.798 42.308 1.36 0.00 0.00 2.73
5649 6789 5.128991 GGCCTACAGTTCAGAAAGGTATAGT 59.871 44.000 0.00 0.00 0.00 2.12
5694 6849 5.412904 AGCTGTGAATAGCCTAAACTTCAAC 59.587 40.000 0.00 0.00 44.76 3.18
6055 7984 9.961265 AAGGAAAAATACGAAAGGTTAGAAAAG 57.039 29.630 0.00 0.00 0.00 2.27
6201 8215 6.942576 AGTCATAGCTTGAACACCAAAATACT 59.057 34.615 0.00 0.00 35.70 2.12
6202 8216 7.145932 AGTCATAGCTTGAACACCAAAATAC 57.854 36.000 0.00 0.00 35.70 1.89
6217 8231 5.163269 TGCATCATTGGAACTAGTCATAGCT 60.163 40.000 0.00 0.00 31.66 3.32
6232 8246 8.091385 TCAGCTAACAACTATATGCATCATTG 57.909 34.615 0.19 6.54 0.00 2.82
6380 8396 5.289193 CCATCGAAATGCACCATGTTAAAAG 59.711 40.000 0.00 0.00 0.00 2.27
6394 8410 2.619147 TGCCAATTTGCCATCGAAATG 58.381 42.857 0.00 0.00 0.00 2.32
6565 8581 7.213678 GTGATAGGAAAAAGCTATAGCAGTCT 58.786 38.462 26.07 15.26 45.16 3.24
6617 8635 1.739929 CGATACCTGTGCACGGCAA 60.740 57.895 20.76 10.29 41.47 4.52
6618 8636 2.125713 CGATACCTGTGCACGGCA 60.126 61.111 20.76 11.32 35.60 5.69
6842 8872 1.613630 AACGGAGGGAGCAGTCCAT 60.614 57.895 0.00 0.00 46.07 3.41
6925 8956 5.734720 ACATACGGACTGAAATGAGTGAAT 58.265 37.500 7.93 0.00 0.00 2.57
7038 9071 4.455533 TGAAGTGGATCGTGATTGGAAAAG 59.544 41.667 0.00 0.00 0.00 2.27
7087 9120 3.368236 GCAACTATGAAGAACGTGACCTC 59.632 47.826 0.00 0.00 0.00 3.85
7164 9198 8.108551 AGGGAGTACTATTTTATAGCGTACAG 57.891 38.462 0.00 0.00 34.43 2.74
7179 9213 7.902920 ATATTTGTTTACGGAGGGAGTACTA 57.097 36.000 0.00 0.00 0.00 1.82
7180 9214 6.803366 ATATTTGTTTACGGAGGGAGTACT 57.197 37.500 0.00 0.00 0.00 2.73
7181 9215 8.416329 TCTTATATTTGTTTACGGAGGGAGTAC 58.584 37.037 0.00 0.00 0.00 2.73
7182 9216 8.537728 TCTTATATTTGTTTACGGAGGGAGTA 57.462 34.615 0.00 0.00 0.00 2.59
7183 9217 7.427989 TCTTATATTTGTTTACGGAGGGAGT 57.572 36.000 0.00 0.00 0.00 3.85
7184 9218 6.424207 GCTCTTATATTTGTTTACGGAGGGAG 59.576 42.308 0.00 0.00 0.00 4.30
7185 9219 6.285990 GCTCTTATATTTGTTTACGGAGGGA 58.714 40.000 0.00 0.00 0.00 4.20
7186 9220 5.176958 CGCTCTTATATTTGTTTACGGAGGG 59.823 44.000 0.00 0.00 0.00 4.30
7187 9221 5.751990 ACGCTCTTATATTTGTTTACGGAGG 59.248 40.000 0.00 0.00 0.00 4.30
7188 9222 6.823678 ACGCTCTTATATTTGTTTACGGAG 57.176 37.500 0.00 0.00 0.00 4.63
7189 9223 7.599630 AAACGCTCTTATATTTGTTTACGGA 57.400 32.000 0.00 0.00 0.00 4.69
7190 9224 8.810427 TCTAAACGCTCTTATATTTGTTTACGG 58.190 33.333 0.00 0.00 32.41 4.02
7195 9229 9.601217 AGTGATCTAAACGCTCTTATATTTGTT 57.399 29.630 0.00 0.00 0.00 2.83
7202 9236 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
7203 9237 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
7204 9238 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
7205 9239 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
7206 9240 9.733219 ATTACTACTTTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
7207 9241 9.733219 GATTACTACTTTAGTGATCTAAACGCT 57.267 33.333 9.68 0.00 44.10 5.07
7236 9270 9.566432 CCCTCTGTAAAGAAATATAAGAGCATT 57.434 33.333 0.00 0.00 0.00 3.56
7237 9271 8.938883 TCCCTCTGTAAAGAAATATAAGAGCAT 58.061 33.333 0.00 0.00 0.00 3.79
7238 9272 8.319057 TCCCTCTGTAAAGAAATATAAGAGCA 57.681 34.615 0.00 0.00 0.00 4.26
7239 9273 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
7247 9281 9.495382 AGAGTAATACTCCCTCTGTAAAGAAAT 57.505 33.333 16.12 0.00 46.18 2.17
7248 9282 8.896722 AGAGTAATACTCCCTCTGTAAAGAAA 57.103 34.615 16.12 0.00 46.18 2.52
7355 9389 7.883073 CAGAAAACGCAATTCTGTATGATAC 57.117 36.000 14.09 0.00 45.53 2.24
7372 9406 9.783256 AGTACAACACAAAATACTTCAGAAAAC 57.217 29.630 0.00 0.00 0.00 2.43
7425 9462 4.681244 CGGAATCCCATTGCAACATCAATT 60.681 41.667 0.00 0.00 34.68 2.32
7439 9476 0.261402 AATCAATGCCCGGAATCCCA 59.739 50.000 0.73 0.00 0.00 4.37
7490 9527 5.897050 AGAACTCGATAAAGTAGAGCAAGG 58.103 41.667 0.00 0.00 33.32 3.61
7514 9551 6.403049 TCGTAAATAGAAGGCAATCAACTGA 58.597 36.000 0.00 0.00 0.00 3.41
7614 9651 3.489398 CGCTGGAAATTAGACGAGCTAGT 60.489 47.826 0.00 0.00 36.12 2.57
7678 9715 6.600822 AGCAGCATTAACTATTGTCAGTGATT 59.399 34.615 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.