Multiple sequence alignment - TraesCS2B01G386500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G386500 chr2B 100.000 3575 0 0 1 3575 549511060 549507486 0.000000e+00 6602.0
1 TraesCS2B01G386500 chr2B 90.980 1807 104 33 931 2718 549385039 549386805 0.000000e+00 2379.0
2 TraesCS2B01G386500 chr2B 86.364 396 41 11 380 772 130028510 130028895 1.530000e-113 420.0
3 TraesCS2B01G386500 chr2B 82.909 275 29 7 1 261 50478813 50478543 7.720000e-57 231.0
4 TraesCS2B01G386500 chr2B 94.845 97 5 0 801 897 50474519 50474423 6.180000e-33 152.0
5 TraesCS2B01G386500 chr2B 93.069 101 7 0 797 897 55546316 55546416 8.000000e-32 148.0
6 TraesCS2B01G386500 chr2D 91.708 1809 105 23 925 2728 470527757 470525989 0.000000e+00 2468.0
7 TraesCS2B01G386500 chr2D 91.799 1573 86 22 924 2479 470432125 470433671 0.000000e+00 2150.0
8 TraesCS2B01G386500 chr2D 91.369 336 28 1 3140 3475 548260335 548260669 3.250000e-125 459.0
9 TraesCS2B01G386500 chr2D 84.000 525 34 14 288 771 568270503 568271018 3.250000e-125 459.0
10 TraesCS2B01G386500 chr2D 89.971 339 30 2 3216 3554 35555446 35555780 5.480000e-118 435.0
11 TraesCS2B01G386500 chr2D 85.139 397 47 10 378 771 46179280 46178893 2.590000e-106 396.0
12 TraesCS2B01G386500 chr2D 87.645 259 27 3 2472 2729 470434722 470434976 2.700000e-76 296.0
13 TraesCS2B01G386500 chr2D 82.282 333 44 13 288 615 46179433 46179111 1.260000e-69 274.0
14 TraesCS2B01G386500 chr2A 90.828 1570 100 18 924 2481 612274313 612275850 0.000000e+00 2061.0
15 TraesCS2B01G386500 chr2A 89.362 94 10 0 804 897 753702108 753702201 6.270000e-23 119.0
16 TraesCS2B01G386500 chr1D 80.273 659 109 16 2830 3475 65580956 65581606 8.980000e-131 477.0
17 TraesCS2B01G386500 chr1D 89.583 96 10 0 802 897 138561842 138561747 4.850000e-24 122.0
18 TraesCS2B01G386500 chr3A 84.600 487 57 12 288 771 746225246 746224775 5.400000e-128 468.0
19 TraesCS2B01G386500 chr6B 82.633 547 36 23 290 778 650982120 650981575 2.550000e-116 429.0
20 TraesCS2B01G386500 chr6B 78.453 543 48 31 288 771 702266532 702267064 1.260000e-74 291.0
21 TraesCS2B01G386500 chr6B 80.473 338 44 20 288 617 708394361 708394038 4.610000e-59 239.0
22 TraesCS2B01G386500 chr6B 94.949 99 4 1 799 897 3389961 3389864 1.720000e-33 154.0
23 TraesCS2B01G386500 chr5B 87.500 360 38 5 3216 3575 230238273 230237921 3.320000e-110 409.0
24 TraesCS2B01G386500 chr5B 87.356 261 30 3 3216 3475 474769723 474769465 2.700000e-76 296.0
25 TraesCS2B01G386500 chr7D 81.885 541 37 31 288 771 599190423 599190959 2.000000e-107 399.0
26 TraesCS2B01G386500 chr7A 82.524 515 29 21 288 744 625068255 625068766 2.590000e-106 396.0
27 TraesCS2B01G386500 chr1B 84.925 398 48 12 378 771 7767748 7767359 3.350000e-105 392.0
28 TraesCS2B01G386500 chr1B 84.673 398 49 12 378 771 7831615 7831226 1.560000e-103 387.0
29 TraesCS2B01G386500 chr1B 81.791 335 39 17 288 615 51967010 51967329 9.840000e-66 261.0
30 TraesCS2B01G386500 chr6D 83.971 418 51 16 359 771 16007347 16007753 1.560000e-103 387.0
31 TraesCS2B01G386500 chr4B 83.732 418 52 14 359 771 670840009 670839603 7.240000e-102 381.0
32 TraesCS2B01G386500 chr7B 83.133 415 59 11 359 771 718880019 718880424 5.640000e-98 368.0
33 TraesCS2B01G386500 chr1A 87.121 264 31 2 3314 3575 569756654 569756392 2.700000e-76 296.0
34 TraesCS2B01G386500 chr1A 91.489 94 7 1 803 895 499764704 499764611 1.040000e-25 128.0
35 TraesCS2B01G386500 chr1A 97.436 39 0 1 3216 3254 125153616 125153579 8.280000e-07 65.8
36 TraesCS2B01G386500 chrUn 86.590 261 32 3 3216 3475 150787355 150787613 5.840000e-73 285.0
37 TraesCS2B01G386500 chr4A 85.985 264 34 2 3314 3575 623722340 623722078 2.720000e-71 279.0
38 TraesCS2B01G386500 chr5A 94.545 110 5 1 3216 3325 653292618 653292510 6.140000e-38 169.0
39 TraesCS2B01G386500 chr5A 91.818 110 8 1 3216 3325 525923602 525923494 6.180000e-33 152.0
40 TraesCS2B01G386500 chr6A 95.960 99 3 1 799 897 293211 293114 3.690000e-35 159.0
41 TraesCS2B01G386500 chr3B 89.109 101 9 2 797 897 190156477 190156575 1.350000e-24 124.0
42 TraesCS2B01G386500 chr3D 89.474 95 9 1 803 897 155958684 155958777 6.270000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G386500 chr2B 549507486 549511060 3574 True 6602 6602 100.0000 1 3575 1 chr2B.!!$R3 3574
1 TraesCS2B01G386500 chr2B 549385039 549386805 1766 False 2379 2379 90.9800 931 2718 1 chr2B.!!$F3 1787
2 TraesCS2B01G386500 chr2D 470525989 470527757 1768 True 2468 2468 91.7080 925 2728 1 chr2D.!!$R1 1803
3 TraesCS2B01G386500 chr2D 470432125 470434976 2851 False 1223 2150 89.7220 924 2729 2 chr2D.!!$F4 1805
4 TraesCS2B01G386500 chr2D 568270503 568271018 515 False 459 459 84.0000 288 771 1 chr2D.!!$F3 483
5 TraesCS2B01G386500 chr2D 46178893 46179433 540 True 335 396 83.7105 288 771 2 chr2D.!!$R2 483
6 TraesCS2B01G386500 chr2A 612274313 612275850 1537 False 2061 2061 90.8280 924 2481 1 chr2A.!!$F1 1557
7 TraesCS2B01G386500 chr1D 65580956 65581606 650 False 477 477 80.2730 2830 3475 1 chr1D.!!$F1 645
8 TraesCS2B01G386500 chr6B 650981575 650982120 545 True 429 429 82.6330 290 778 1 chr6B.!!$R2 488
9 TraesCS2B01G386500 chr6B 702266532 702267064 532 False 291 291 78.4530 288 771 1 chr6B.!!$F1 483
10 TraesCS2B01G386500 chr7D 599190423 599190959 536 False 399 399 81.8850 288 771 1 chr7D.!!$F1 483
11 TraesCS2B01G386500 chr7A 625068255 625068766 511 False 396 396 82.5240 288 744 1 chr7A.!!$F1 456

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.026803 CGCGTTGGCTATGCTCTTTC 59.973 55.0 11.20 0.0 36.58 2.62 F
263 264 0.107017 TGGCTATGCTCTTTCCTGGC 60.107 55.0 0.00 0.0 0.00 4.85 F
362 366 0.520619 GCGCCGGTTCTCGATTTTTC 60.521 55.0 1.90 0.0 42.43 2.29 F
1642 1791 0.676782 TCTCATCGCAGAGACCACGA 60.677 55.0 2.97 0.0 43.63 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1303 1442 0.676466 ATTTGTCCGCGAAGATGCCA 60.676 50.000 8.23 0.0 0.00 4.92 R
2200 2349 2.125912 GCACATCTGCTCGACGGT 60.126 61.111 0.00 0.0 40.63 4.83 R
2272 2421 0.825010 GGGCTATAGGTCGGGTTCGA 60.825 60.000 1.04 0.0 43.86 3.71 R
2935 4175 0.031178 GCCGGCCACATGATTCAATC 59.969 55.000 18.11 0.0 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 9.573133 AAAAGTTTTCAGTGTATCAAGACTTTG 57.427 29.630 10.04 0.00 35.65 2.77
72 73 7.865706 AGTTTTCAGTGTATCAAGACTTTGT 57.134 32.000 0.00 0.00 35.73 2.83
73 74 8.281212 AGTTTTCAGTGTATCAAGACTTTGTT 57.719 30.769 0.00 0.00 35.73 2.83
74 75 8.398665 AGTTTTCAGTGTATCAAGACTTTGTTC 58.601 33.333 0.00 0.00 35.73 3.18
75 76 7.857734 TTTCAGTGTATCAAGACTTTGTTCA 57.142 32.000 0.00 0.00 35.73 3.18
76 77 6.844696 TCAGTGTATCAAGACTTTGTTCAC 57.155 37.500 0.00 0.00 35.73 3.18
77 78 6.345298 TCAGTGTATCAAGACTTTGTTCACA 58.655 36.000 10.71 0.00 35.28 3.58
78 79 6.992123 TCAGTGTATCAAGACTTTGTTCACAT 59.008 34.615 10.71 0.00 35.28 3.21
79 80 8.147704 TCAGTGTATCAAGACTTTGTTCACATA 58.852 33.333 10.71 0.37 35.28 2.29
80 81 8.939929 CAGTGTATCAAGACTTTGTTCACATAT 58.060 33.333 10.71 0.00 35.28 1.78
81 82 9.507329 AGTGTATCAAGACTTTGTTCACATATT 57.493 29.630 10.71 0.00 35.28 1.28
82 83 9.760660 GTGTATCAAGACTTTGTTCACATATTC 57.239 33.333 0.00 0.00 35.73 1.75
83 84 9.725019 TGTATCAAGACTTTGTTCACATATTCT 57.275 29.630 0.00 0.00 35.73 2.40
84 85 9.979270 GTATCAAGACTTTGTTCACATATTCTG 57.021 33.333 0.00 0.00 35.73 3.02
85 86 8.853077 ATCAAGACTTTGTTCACATATTCTGA 57.147 30.769 0.00 0.00 35.73 3.27
86 87 8.675705 TCAAGACTTTGTTCACATATTCTGAA 57.324 30.769 0.00 0.00 35.73 3.02
87 88 9.119418 TCAAGACTTTGTTCACATATTCTGAAA 57.881 29.630 0.00 0.00 35.73 2.69
88 89 9.734620 CAAGACTTTGTTCACATATTCTGAAAA 57.265 29.630 0.00 0.00 29.44 2.29
90 91 9.903682 AGACTTTGTTCACATATTCTGAAAATG 57.096 29.630 0.00 0.00 29.44 2.32
91 92 9.683069 GACTTTGTTCACATATTCTGAAAATGT 57.317 29.630 0.00 0.00 34.22 2.71
96 97 9.681692 TGTTCACATATTCTGAAAATGTTCAAG 57.318 29.630 0.00 0.00 43.18 3.02
97 98 9.897744 GTTCACATATTCTGAAAATGTTCAAGA 57.102 29.630 0.00 0.00 43.18 3.02
115 116 9.936759 TGTTCAAGATTTTTAGGTTTTTCTTGT 57.063 25.926 9.52 0.00 40.41 3.16
124 125 9.640963 TTTTTAGGTTTTTCTTGTCAATTTCGA 57.359 25.926 0.00 0.00 0.00 3.71
125 126 9.640963 TTTTAGGTTTTTCTTGTCAATTTCGAA 57.359 25.926 0.00 0.00 0.00 3.71
126 127 9.640963 TTTAGGTTTTTCTTGTCAATTTCGAAA 57.359 25.926 13.91 13.91 0.00 3.46
127 128 9.640963 TTAGGTTTTTCTTGTCAATTTCGAAAA 57.359 25.926 15.66 6.43 33.32 2.29
128 129 8.185003 AGGTTTTTCTTGTCAATTTCGAAAAG 57.815 30.769 15.66 10.78 35.70 2.27
129 130 7.817478 AGGTTTTTCTTGTCAATTTCGAAAAGT 59.183 29.630 15.66 3.00 35.70 2.66
130 131 7.897800 GGTTTTTCTTGTCAATTTCGAAAAGTG 59.102 33.333 15.66 15.47 35.70 3.16
131 132 8.432359 GTTTTTCTTGTCAATTTCGAAAAGTGT 58.568 29.630 15.66 0.00 35.70 3.55
132 133 7.734538 TTTCTTGTCAATTTCGAAAAGTGTC 57.265 32.000 15.66 13.46 32.82 3.67
133 134 5.498159 TCTTGTCAATTTCGAAAAGTGTCG 58.502 37.500 15.66 1.77 42.48 4.35
134 135 3.613563 TGTCAATTTCGAAAAGTGTCGC 58.386 40.909 15.66 10.80 40.88 5.19
135 136 3.311322 TGTCAATTTCGAAAAGTGTCGCT 59.689 39.130 15.66 0.00 40.88 4.93
136 137 4.201871 TGTCAATTTCGAAAAGTGTCGCTT 60.202 37.500 15.66 0.00 40.88 4.68
167 168 8.480643 AAAACACGTTTTCAAAATAATGTCCA 57.519 26.923 2.06 0.00 38.27 4.02
168 169 7.458038 AACACGTTTTCAAAATAATGTCCAC 57.542 32.000 0.00 0.00 0.00 4.02
169 170 6.801575 ACACGTTTTCAAAATAATGTCCACT 58.198 32.000 0.00 0.00 0.00 4.00
170 171 7.262048 ACACGTTTTCAAAATAATGTCCACTT 58.738 30.769 0.00 0.00 0.00 3.16
171 172 7.762159 ACACGTTTTCAAAATAATGTCCACTTT 59.238 29.630 0.00 0.00 0.00 2.66
172 173 8.055402 CACGTTTTCAAAATAATGTCCACTTTG 58.945 33.333 0.00 0.00 0.00 2.77
173 174 7.223777 ACGTTTTCAAAATAATGTCCACTTTGG 59.776 33.333 0.00 0.00 39.43 3.28
174 175 7.307101 CGTTTTCAAAATAATGTCCACTTTGGG 60.307 37.037 0.00 0.00 38.32 4.12
175 176 6.985653 TTCAAAATAATGTCCACTTTGGGA 57.014 33.333 0.00 0.00 38.32 4.37
176 177 6.985653 TCAAAATAATGTCCACTTTGGGAA 57.014 33.333 0.00 0.00 39.05 3.97
177 178 7.552050 TCAAAATAATGTCCACTTTGGGAAT 57.448 32.000 0.00 0.00 39.05 3.01
178 179 7.972301 TCAAAATAATGTCCACTTTGGGAATT 58.028 30.769 0.00 0.00 39.05 2.17
179 180 8.435982 TCAAAATAATGTCCACTTTGGGAATTT 58.564 29.630 0.00 0.00 39.05 1.82
180 181 8.505625 CAAAATAATGTCCACTTTGGGAATTTG 58.494 33.333 0.00 0.00 39.05 2.32
181 182 7.552050 AATAATGTCCACTTTGGGAATTTGA 57.448 32.000 0.00 0.00 39.05 2.69
182 183 5.885449 AATGTCCACTTTGGGAATTTGAA 57.115 34.783 0.00 0.00 39.05 2.69
183 184 5.885449 ATGTCCACTTTGGGAATTTGAAA 57.115 34.783 0.00 0.00 39.05 2.69
184 185 5.683876 TGTCCACTTTGGGAATTTGAAAA 57.316 34.783 0.00 0.00 39.05 2.29
185 186 6.054860 TGTCCACTTTGGGAATTTGAAAAA 57.945 33.333 0.00 0.00 39.05 1.94
211 212 9.740710 AATGTTTGGACCTATATTATCCTTAGC 57.259 33.333 0.00 0.00 33.34 3.09
212 213 8.506196 TGTTTGGACCTATATTATCCTTAGCT 57.494 34.615 0.00 0.00 33.34 3.32
213 214 8.945193 TGTTTGGACCTATATTATCCTTAGCTT 58.055 33.333 0.00 0.00 33.34 3.74
214 215 9.438228 GTTTGGACCTATATTATCCTTAGCTTC 57.562 37.037 0.00 0.00 33.34 3.86
215 216 7.406031 TGGACCTATATTATCCTTAGCTTCG 57.594 40.000 0.00 0.00 33.34 3.79
216 217 6.127423 TGGACCTATATTATCCTTAGCTTCGC 60.127 42.308 0.00 0.00 33.34 4.70
217 218 5.892568 ACCTATATTATCCTTAGCTTCGCG 58.107 41.667 0.00 0.00 0.00 5.87
218 219 4.740695 CCTATATTATCCTTAGCTTCGCGC 59.259 45.833 0.00 0.00 39.57 6.86
219 220 1.419374 ATTATCCTTAGCTTCGCGCG 58.581 50.000 26.76 26.76 45.59 6.86
220 221 0.596600 TTATCCTTAGCTTCGCGCGG 60.597 55.000 31.69 16.42 45.59 6.46
225 226 4.830765 TAGCTTCGCGCGGCCAAT 62.831 61.111 31.69 14.83 45.59 3.16
226 227 2.909614 TTAGCTTCGCGCGGCCAATA 62.910 55.000 31.69 13.78 45.59 1.90
227 228 2.909614 TAGCTTCGCGCGGCCAATAA 62.910 55.000 31.69 14.72 45.59 1.40
228 229 2.788581 CTTCGCGCGGCCAATAAA 59.211 55.556 31.69 13.93 0.00 1.40
229 230 1.297598 CTTCGCGCGGCCAATAAAG 60.298 57.895 31.69 19.70 0.00 1.85
230 231 3.389727 TTCGCGCGGCCAATAAAGC 62.390 57.895 31.69 0.00 0.00 3.51
231 232 3.876198 CGCGCGGCCAATAAAGCT 61.876 61.111 24.84 0.00 0.00 3.74
232 233 2.024729 GCGCGGCCAATAAAGCTC 59.975 61.111 8.83 0.00 0.00 4.09
233 234 2.760159 GCGCGGCCAATAAAGCTCA 61.760 57.895 8.83 0.00 0.00 4.26
234 235 2.024918 CGCGGCCAATAAAGCTCAT 58.975 52.632 2.24 0.00 0.00 2.90
235 236 0.040958 CGCGGCCAATAAAGCTCATC 60.041 55.000 2.24 0.00 0.00 2.92
236 237 1.312815 GCGGCCAATAAAGCTCATCT 58.687 50.000 2.24 0.00 0.00 2.90
237 238 2.494059 GCGGCCAATAAAGCTCATCTA 58.506 47.619 2.24 0.00 0.00 1.98
238 239 2.481952 GCGGCCAATAAAGCTCATCTAG 59.518 50.000 2.24 0.00 0.00 2.43
246 247 3.313750 GCTCATCTAGCGCGTTGG 58.686 61.111 8.43 3.22 42.53 3.77
247 248 2.875786 GCTCATCTAGCGCGTTGGC 61.876 63.158 8.43 0.00 42.53 4.52
248 249 1.227089 CTCATCTAGCGCGTTGGCT 60.227 57.895 8.43 0.00 46.88 4.75
249 250 0.030773 CTCATCTAGCGCGTTGGCTA 59.969 55.000 8.43 0.00 44.29 3.93
250 251 0.673985 TCATCTAGCGCGTTGGCTAT 59.326 50.000 8.43 0.00 44.02 2.97
251 252 0.786581 CATCTAGCGCGTTGGCTATG 59.213 55.000 8.43 0.36 44.02 2.23
252 253 0.946221 ATCTAGCGCGTTGGCTATGC 60.946 55.000 8.43 2.90 44.02 3.14
253 254 1.592669 CTAGCGCGTTGGCTATGCT 60.593 57.895 8.43 5.27 44.02 3.79
254 255 1.552348 CTAGCGCGTTGGCTATGCTC 61.552 60.000 8.43 3.34 44.02 4.26
255 256 2.016393 TAGCGCGTTGGCTATGCTCT 62.016 55.000 8.43 10.28 44.29 4.09
256 257 2.464459 GCGCGTTGGCTATGCTCTT 61.464 57.895 8.43 0.00 36.58 2.85
257 258 1.982073 GCGCGTTGGCTATGCTCTTT 61.982 55.000 8.43 0.00 36.58 2.52
258 259 0.026803 CGCGTTGGCTATGCTCTTTC 59.973 55.000 11.20 0.00 36.58 2.62
259 260 0.378610 GCGTTGGCTATGCTCTTTCC 59.621 55.000 5.87 0.00 35.80 3.13
260 261 2.014068 GCGTTGGCTATGCTCTTTCCT 61.014 52.381 5.87 0.00 35.80 3.36
261 262 1.667724 CGTTGGCTATGCTCTTTCCTG 59.332 52.381 0.00 0.00 0.00 3.86
262 263 2.019984 GTTGGCTATGCTCTTTCCTGG 58.980 52.381 0.00 0.00 0.00 4.45
263 264 0.107017 TGGCTATGCTCTTTCCTGGC 60.107 55.000 0.00 0.00 0.00 4.85
264 265 0.107017 GGCTATGCTCTTTCCTGGCA 60.107 55.000 0.00 0.00 40.32 4.92
265 266 1.478288 GGCTATGCTCTTTCCTGGCAT 60.478 52.381 0.00 0.00 46.49 4.40
266 267 2.305009 GCTATGCTCTTTCCTGGCATT 58.695 47.619 5.01 0.00 43.02 3.56
267 268 2.692041 GCTATGCTCTTTCCTGGCATTT 59.308 45.455 5.01 0.00 43.02 2.32
268 269 3.243334 GCTATGCTCTTTCCTGGCATTTC 60.243 47.826 5.01 0.00 43.02 2.17
269 270 1.549203 TGCTCTTTCCTGGCATTTCC 58.451 50.000 0.00 0.00 0.00 3.13
270 271 1.076024 TGCTCTTTCCTGGCATTTCCT 59.924 47.619 0.00 0.00 35.26 3.36
271 272 2.308570 TGCTCTTTCCTGGCATTTCCTA 59.691 45.455 0.00 0.00 35.26 2.94
272 273 3.245229 TGCTCTTTCCTGGCATTTCCTAA 60.245 43.478 0.00 0.00 35.26 2.69
273 274 3.129462 GCTCTTTCCTGGCATTTCCTAAC 59.871 47.826 0.00 0.00 35.26 2.34
274 275 3.696548 CTCTTTCCTGGCATTTCCTAACC 59.303 47.826 0.00 0.00 35.26 2.85
275 276 3.075283 TCTTTCCTGGCATTTCCTAACCA 59.925 43.478 0.00 0.00 35.26 3.67
277 278 1.992557 TCCTGGCATTTCCTAACCAGT 59.007 47.619 7.10 0.00 46.80 4.00
278 279 3.186283 TCCTGGCATTTCCTAACCAGTA 58.814 45.455 7.10 0.00 46.80 2.74
279 280 3.589735 TCCTGGCATTTCCTAACCAGTAA 59.410 43.478 7.10 0.00 46.80 2.24
280 281 4.043561 TCCTGGCATTTCCTAACCAGTAAA 59.956 41.667 7.10 0.00 46.80 2.01
281 282 4.157840 CCTGGCATTTCCTAACCAGTAAAC 59.842 45.833 7.10 0.00 46.80 2.01
282 283 4.083565 TGGCATTTCCTAACCAGTAAACC 58.916 43.478 0.00 0.00 35.26 3.27
283 284 4.202631 TGGCATTTCCTAACCAGTAAACCT 60.203 41.667 0.00 0.00 35.26 3.50
284 285 5.014333 TGGCATTTCCTAACCAGTAAACCTA 59.986 40.000 0.00 0.00 35.26 3.08
285 286 6.127101 GGCATTTCCTAACCAGTAAACCTAT 58.873 40.000 0.00 0.00 0.00 2.57
286 287 6.605995 GGCATTTCCTAACCAGTAAACCTATT 59.394 38.462 0.00 0.00 0.00 1.73
352 354 2.280186 CCATCTAGGCGCCGGTTC 60.280 66.667 23.20 0.00 0.00 3.62
353 355 2.797278 CCATCTAGGCGCCGGTTCT 61.797 63.158 23.20 5.39 0.00 3.01
361 365 1.500396 GCGCCGGTTCTCGATTTTT 59.500 52.632 1.90 0.00 42.43 1.94
362 366 0.520619 GCGCCGGTTCTCGATTTTTC 60.521 55.000 1.90 0.00 42.43 2.29
522 627 7.817418 TTCTATGAACTTTTGCTAAGTTGGT 57.183 32.000 18.16 10.89 40.27 3.67
749 881 1.363885 GGATCGTTAACGGGCGCTTT 61.364 55.000 26.51 0.51 40.29 3.51
751 883 1.689352 ATCGTTAACGGGCGCTTTCG 61.689 55.000 26.51 12.00 40.29 3.46
778 910 2.110753 ATAGGAGCTCCCCTCTTTCC 57.889 55.000 29.54 1.36 40.57 3.13
779 911 1.019650 TAGGAGCTCCCCTCTTTCCT 58.980 55.000 29.54 9.89 40.57 3.36
780 912 1.019650 AGGAGCTCCCCTCTTTCCTA 58.980 55.000 29.54 0.00 40.57 2.94
781 913 1.124780 GGAGCTCCCCTCTTTCCTAC 58.875 60.000 23.19 0.00 40.57 3.18
782 914 1.124780 GAGCTCCCCTCTTTCCTACC 58.875 60.000 0.87 0.00 37.60 3.18
783 915 0.719623 AGCTCCCCTCTTTCCTACCT 59.280 55.000 0.00 0.00 0.00 3.08
784 916 1.938069 AGCTCCCCTCTTTCCTACCTA 59.062 52.381 0.00 0.00 0.00 3.08
785 917 2.318207 AGCTCCCCTCTTTCCTACCTAA 59.682 50.000 0.00 0.00 0.00 2.69
786 918 2.435069 GCTCCCCTCTTTCCTACCTAAC 59.565 54.545 0.00 0.00 0.00 2.34
787 919 3.721021 CTCCCCTCTTTCCTACCTAACA 58.279 50.000 0.00 0.00 0.00 2.41
788 920 3.707102 CTCCCCTCTTTCCTACCTAACAG 59.293 52.174 0.00 0.00 0.00 3.16
789 921 3.078612 TCCCCTCTTTCCTACCTAACAGT 59.921 47.826 0.00 0.00 0.00 3.55
790 922 4.295775 TCCCCTCTTTCCTACCTAACAGTA 59.704 45.833 0.00 0.00 0.00 2.74
791 923 4.650131 CCCCTCTTTCCTACCTAACAGTAG 59.350 50.000 0.00 0.00 39.60 2.57
802 934 4.124851 CCTAACAGTAGGTTCGCATTCT 57.875 45.455 0.00 0.00 41.98 2.40
803 935 4.504858 CCTAACAGTAGGTTCGCATTCTT 58.495 43.478 0.00 0.00 41.98 2.52
804 936 4.935808 CCTAACAGTAGGTTCGCATTCTTT 59.064 41.667 0.00 0.00 41.98 2.52
805 937 5.411669 CCTAACAGTAGGTTCGCATTCTTTT 59.588 40.000 0.00 0.00 41.98 2.27
806 938 5.767816 AACAGTAGGTTCGCATTCTTTTT 57.232 34.783 0.00 0.00 33.35 1.94
826 958 5.786401 TTTTTGGATTTTTCACCGTGTTG 57.214 34.783 0.00 0.00 0.00 3.33
827 959 2.500509 TGGATTTTTCACCGTGTTGC 57.499 45.000 0.00 0.00 0.00 4.17
828 960 1.268794 TGGATTTTTCACCGTGTTGCG 60.269 47.619 0.00 0.00 40.95 4.85
837 969 2.483288 CGTGTTGCGGTAATGGGC 59.517 61.111 0.00 0.00 36.85 5.36
838 970 2.882132 GTGTTGCGGTAATGGGCC 59.118 61.111 0.00 0.00 0.00 5.80
877 1009 3.788766 GTGCGTTCGCTCGGCAAT 61.789 61.111 17.63 0.00 0.00 3.56
878 1010 3.047280 TGCGTTCGCTCGGCAATT 61.047 55.556 17.63 0.00 0.00 2.32
879 1011 2.175811 GCGTTCGCTCGGCAATTT 59.824 55.556 9.99 0.00 0.00 1.82
880 1012 2.145905 GCGTTCGCTCGGCAATTTG 61.146 57.895 9.99 0.00 0.00 2.32
881 1013 2.145905 CGTTCGCTCGGCAATTTGC 61.146 57.895 13.04 13.04 44.08 3.68
891 1023 1.711500 GCAATTTGCCGCAATGAGC 59.289 52.632 10.34 7.45 37.42 4.26
901 1033 3.188100 CAATGAGCGGCGCGAGAA 61.188 61.111 27.59 13.67 0.00 2.87
902 1034 2.434185 AATGAGCGGCGCGAGAAA 60.434 55.556 27.59 11.75 0.00 2.52
903 1035 2.740714 AATGAGCGGCGCGAGAAAC 61.741 57.895 27.59 14.53 0.00 2.78
977 1109 2.696504 CCCTCCCCTTTCTCCCCC 60.697 72.222 0.00 0.00 0.00 5.40
978 1110 2.461637 CCTCCCCTTTCTCCCCCT 59.538 66.667 0.00 0.00 0.00 4.79
982 1114 1.006043 CTCCCCTTTCTCCCCCTTTTC 59.994 57.143 0.00 0.00 0.00 2.29
987 1119 2.224793 CCTTTCTCCCCCTTTTCTTCGT 60.225 50.000 0.00 0.00 0.00 3.85
1009 1141 2.360475 AAAGCCTTCGCCTCCAGC 60.360 61.111 0.00 0.00 34.57 4.85
1141 1280 2.338577 ATTTCATCTTCTCGCCCCTG 57.661 50.000 0.00 0.00 0.00 4.45
1303 1442 4.749310 CAGCTCACCTTCGCCGCT 62.749 66.667 0.00 0.00 0.00 5.52
1427 1566 4.018415 AGGTAGTTCCATAGTGGCATTTGT 60.018 41.667 0.00 0.00 37.47 2.83
1433 1572 3.054434 TCCATAGTGGCATTTGTAGCACT 60.054 43.478 0.00 0.00 37.47 4.40
1478 1622 6.215845 AGTAAATTGACAATCAACCTGCAAC 58.784 36.000 0.05 0.00 39.45 4.17
1487 1631 5.068987 ACAATCAACCTGCAACTAAACATGT 59.931 36.000 0.00 0.00 0.00 3.21
1488 1632 5.789643 ATCAACCTGCAACTAAACATGTT 57.210 34.783 4.92 4.92 0.00 2.71
1489 1633 5.590530 TCAACCTGCAACTAAACATGTTT 57.409 34.783 25.99 25.99 36.63 2.83
1490 1634 5.971763 TCAACCTGCAACTAAACATGTTTT 58.028 33.333 27.66 9.38 34.23 2.43
1491 1635 6.402222 TCAACCTGCAACTAAACATGTTTTT 58.598 32.000 27.66 14.87 34.23 1.94
1642 1791 0.676782 TCTCATCGCAGAGACCACGA 60.677 55.000 2.97 0.00 43.63 4.35
2096 2245 2.125673 CTTCCGGTTCGACGCCAT 60.126 61.111 0.00 0.00 0.00 4.40
2200 2349 1.310933 GGAAGGGCTCTACGTGTCGA 61.311 60.000 0.00 0.00 0.00 4.20
2441 2607 4.630069 AGTTGATGGACGGTTTCGATTTAG 59.370 41.667 0.00 0.00 40.11 1.85
2444 2610 2.963432 TGGACGGTTTCGATTTAGTCC 58.037 47.619 18.06 18.06 45.95 3.85
2446 2612 2.669924 GGACGGTTTCGATTTAGTCCAC 59.330 50.000 19.25 1.14 45.30 4.02
2452 2618 4.378459 GGTTTCGATTTAGTCCACAGCAAG 60.378 45.833 0.00 0.00 0.00 4.01
2455 2621 1.745653 GATTTAGTCCACAGCAAGGCC 59.254 52.381 0.00 0.00 0.00 5.19
2457 2623 1.764571 TTAGTCCACAGCAAGGCCGT 61.765 55.000 0.00 0.00 0.00 5.68
2510 3743 7.227512 TCTCTGTTTCATTCCTCTGTTCTTTTC 59.772 37.037 0.00 0.00 0.00 2.29
2647 3884 4.569719 ACTCGGTGGTGATTTCCTATTT 57.430 40.909 0.00 0.00 0.00 1.40
2703 3940 1.338020 CACACCTTTGGGAGCACTTTC 59.662 52.381 0.00 0.00 36.25 2.62
2729 3966 9.455847 CTCTTGAAGAGAAACCAATACAAAAAG 57.544 33.333 17.02 0.00 45.07 2.27
2730 3967 8.413229 TCTTGAAGAGAAACCAATACAAAAAGG 58.587 33.333 0.00 0.00 0.00 3.11
2731 3968 7.049799 TGAAGAGAAACCAATACAAAAAGGG 57.950 36.000 0.00 0.00 0.00 3.95
2732 3969 5.468540 AGAGAAACCAATACAAAAAGGGC 57.531 39.130 0.00 0.00 0.00 5.19
2733 3970 4.022329 AGAGAAACCAATACAAAAAGGGCG 60.022 41.667 0.00 0.00 0.00 6.13
2734 3971 3.892588 AGAAACCAATACAAAAAGGGCGA 59.107 39.130 0.00 0.00 0.00 5.54
2735 3972 3.653539 AACCAATACAAAAAGGGCGAC 57.346 42.857 0.00 0.00 0.00 5.19
2736 3973 1.538075 ACCAATACAAAAAGGGCGACG 59.462 47.619 0.00 0.00 0.00 5.12
2737 3974 1.807742 CCAATACAAAAAGGGCGACGA 59.192 47.619 0.00 0.00 0.00 4.20
2738 3975 2.422127 CCAATACAAAAAGGGCGACGAT 59.578 45.455 0.00 0.00 0.00 3.73
2739 3976 3.623960 CCAATACAAAAAGGGCGACGATA 59.376 43.478 0.00 0.00 0.00 2.92
2740 3977 4.260620 CCAATACAAAAAGGGCGACGATAG 60.261 45.833 0.00 0.00 46.19 2.08
2741 3978 1.734163 ACAAAAAGGGCGACGATAGG 58.266 50.000 0.00 0.00 43.77 2.57
2742 3979 0.377203 CAAAAAGGGCGACGATAGGC 59.623 55.000 0.00 0.00 44.83 3.93
2776 4013 3.691342 AGCGCCTGACAGCCGTTA 61.691 61.111 2.29 0.00 0.00 3.18
2777 4014 3.188786 GCGCCTGACAGCCGTTAG 61.189 66.667 7.73 0.00 0.00 2.34
2778 4015 2.571757 CGCCTGACAGCCGTTAGA 59.428 61.111 0.00 0.00 30.35 2.10
2779 4016 1.141881 CGCCTGACAGCCGTTAGAT 59.858 57.895 0.00 0.00 30.35 1.98
2780 4017 1.148157 CGCCTGACAGCCGTTAGATG 61.148 60.000 0.00 0.00 30.35 2.90
2781 4018 0.175760 GCCTGACAGCCGTTAGATGA 59.824 55.000 0.00 0.00 30.35 2.92
2782 4019 1.804372 GCCTGACAGCCGTTAGATGAG 60.804 57.143 0.00 0.00 30.35 2.90
2783 4020 1.565305 CTGACAGCCGTTAGATGAGC 58.435 55.000 0.00 0.00 30.35 4.26
2784 4021 0.175760 TGACAGCCGTTAGATGAGCC 59.824 55.000 0.00 0.00 0.00 4.70
2785 4022 0.175760 GACAGCCGTTAGATGAGCCA 59.824 55.000 0.00 0.00 0.00 4.75
2786 4023 0.176680 ACAGCCGTTAGATGAGCCAG 59.823 55.000 0.00 0.00 0.00 4.85
2787 4024 0.531532 CAGCCGTTAGATGAGCCAGG 60.532 60.000 0.00 0.00 0.00 4.45
2788 4025 0.978146 AGCCGTTAGATGAGCCAGGT 60.978 55.000 0.00 0.00 0.00 4.00
2789 4026 0.811616 GCCGTTAGATGAGCCAGGTG 60.812 60.000 0.00 0.00 0.00 4.00
2790 4027 0.824109 CCGTTAGATGAGCCAGGTGA 59.176 55.000 0.00 0.00 0.00 4.02
2791 4028 1.207089 CCGTTAGATGAGCCAGGTGAA 59.793 52.381 0.00 0.00 0.00 3.18
2792 4029 2.354704 CCGTTAGATGAGCCAGGTGAAA 60.355 50.000 0.00 0.00 0.00 2.69
2793 4030 2.673368 CGTTAGATGAGCCAGGTGAAAC 59.327 50.000 0.00 0.00 0.00 2.78
2819 4056 4.070552 GCCCTTGTCCTCGCGTCT 62.071 66.667 5.77 0.00 0.00 4.18
2820 4057 2.657237 CCCTTGTCCTCGCGTCTT 59.343 61.111 5.77 0.00 0.00 3.01
2821 4058 1.446272 CCCTTGTCCTCGCGTCTTC 60.446 63.158 5.77 0.00 0.00 2.87
2822 4059 1.446272 CCTTGTCCTCGCGTCTTCC 60.446 63.158 5.77 0.00 0.00 3.46
2823 4060 1.587054 CTTGTCCTCGCGTCTTCCT 59.413 57.895 5.77 0.00 0.00 3.36
2824 4061 0.456995 CTTGTCCTCGCGTCTTCCTC 60.457 60.000 5.77 0.00 0.00 3.71
2825 4062 1.874345 TTGTCCTCGCGTCTTCCTCC 61.874 60.000 5.77 0.00 0.00 4.30
2826 4063 2.047443 GTCCTCGCGTCTTCCTCCT 61.047 63.158 5.77 0.00 0.00 3.69
2827 4064 1.304217 TCCTCGCGTCTTCCTCCTT 60.304 57.895 5.77 0.00 0.00 3.36
2828 4065 1.139947 CCTCGCGTCTTCCTCCTTC 59.860 63.158 5.77 0.00 0.00 3.46
2829 4066 1.139947 CTCGCGTCTTCCTCCTTCC 59.860 63.158 5.77 0.00 0.00 3.46
2830 4067 1.304217 TCGCGTCTTCCTCCTTCCT 60.304 57.895 5.77 0.00 0.00 3.36
2831 4068 0.898789 TCGCGTCTTCCTCCTTCCTT 60.899 55.000 5.77 0.00 0.00 3.36
2832 4069 0.458716 CGCGTCTTCCTCCTTCCTTC 60.459 60.000 0.00 0.00 0.00 3.46
2833 4070 0.108089 GCGTCTTCCTCCTTCCTTCC 60.108 60.000 0.00 0.00 0.00 3.46
2834 4071 1.562783 CGTCTTCCTCCTTCCTTCCT 58.437 55.000 0.00 0.00 0.00 3.36
2835 4072 1.478916 CGTCTTCCTCCTTCCTTCCTC 59.521 57.143 0.00 0.00 0.00 3.71
2836 4073 1.834896 GTCTTCCTCCTTCCTTCCTCC 59.165 57.143 0.00 0.00 0.00 4.30
2839 4076 1.694525 CCTCCTTCCTTCCTCCCCC 60.695 68.421 0.00 0.00 0.00 5.40
2843 4080 1.694525 CTTCCTTCCTCCCCCTCCC 60.695 68.421 0.00 0.00 0.00 4.30
2844 4081 3.283467 TTCCTTCCTCCCCCTCCCC 62.283 68.421 0.00 0.00 0.00 4.81
2845 4082 4.845307 CCTTCCTCCCCCTCCCCC 62.845 77.778 0.00 0.00 0.00 5.40
2886 4126 4.077184 CTCGCGTGCCCCCAGTAA 62.077 66.667 5.77 0.00 0.00 2.24
2895 4135 3.697747 CCCCAGTAACCGCGTCCA 61.698 66.667 4.92 0.00 0.00 4.02
2896 4136 2.582436 CCCAGTAACCGCGTCCAT 59.418 61.111 4.92 0.00 0.00 3.41
2898 4138 1.515954 CCAGTAACCGCGTCCATCT 59.484 57.895 4.92 0.00 0.00 2.90
2907 4147 1.663379 CGCGTCCATCTCCCACTACA 61.663 60.000 0.00 0.00 0.00 2.74
2910 4150 0.466124 GTCCATCTCCCACTACAGGC 59.534 60.000 0.00 0.00 0.00 4.85
2923 4163 0.250234 TACAGGCGAGCTTGAAGCAT 59.750 50.000 20.45 4.34 45.56 3.79
2928 4168 2.101770 GAGCTTGAAGCATGCCGC 59.898 61.111 20.45 7.31 45.56 6.53
2938 4178 2.514592 CATGCCGCCGGTGAGATT 60.515 61.111 18.79 0.00 0.00 2.40
2948 4188 2.032550 GCCGGTGAGATTGAATCATGTG 59.967 50.000 8.03 0.00 0.00 3.21
2961 4201 3.469970 ATGTGGCCGGCGAGATCA 61.470 61.111 22.54 11.82 0.00 2.92
2972 4212 0.385223 GCGAGATCAAATCATGCCGC 60.385 55.000 0.00 0.00 34.71 6.53
2974 4214 1.194098 CGAGATCAAATCATGCCGCTC 59.806 52.381 0.00 0.00 0.00 5.03
2975 4215 1.194098 GAGATCAAATCATGCCGCTCG 59.806 52.381 0.00 0.00 0.00 5.03
2984 4224 4.393155 TGCCGCTCGCACTTCCAT 62.393 61.111 0.00 0.00 44.64 3.41
2988 4228 2.586792 GCTCGCACTTCCATCCCT 59.413 61.111 0.00 0.00 0.00 4.20
2989 4229 1.078143 GCTCGCACTTCCATCCCTT 60.078 57.895 0.00 0.00 0.00 3.95
2991 4231 1.826385 CTCGCACTTCCATCCCTTTT 58.174 50.000 0.00 0.00 0.00 2.27
2993 4233 0.447801 CGCACTTCCATCCCTTTTCG 59.552 55.000 0.00 0.00 0.00 3.46
3004 4245 2.680913 CCTTTTCGTGCTCGCCTGG 61.681 63.158 2.69 0.00 36.96 4.45
3014 4255 3.655810 CTCGCCTGGCTCTCCACAC 62.656 68.421 17.92 0.00 37.47 3.82
3017 4258 2.888447 GCCTGGCTCTCCACACTGT 61.888 63.158 12.43 0.00 37.47 3.55
3020 4261 0.107456 CTGGCTCTCCACACTGTTGT 59.893 55.000 0.00 0.00 37.47 3.32
3029 4270 2.503765 TCCACACTGTTGTTCTCCTCAA 59.496 45.455 0.00 0.00 31.66 3.02
3031 4272 2.289002 CACACTGTTGTTCTCCTCAAGC 59.711 50.000 0.00 0.00 31.66 4.01
3033 4274 1.771255 ACTGTTGTTCTCCTCAAGCCT 59.229 47.619 0.00 0.00 0.00 4.58
3038 4279 1.021920 GTTCTCCTCAAGCCTTCGCC 61.022 60.000 0.00 0.00 34.57 5.54
3039 4280 2.507110 TTCTCCTCAAGCCTTCGCCG 62.507 60.000 0.00 0.00 34.57 6.46
3041 4282 2.815647 CCTCAAGCCTTCGCCGTC 60.816 66.667 0.00 0.00 34.57 4.79
3042 4283 3.181967 CTCAAGCCTTCGCCGTCG 61.182 66.667 0.00 0.00 34.57 5.12
3054 4297 2.973600 CCGTCGAAAAACGCCCCA 60.974 61.111 0.00 0.00 41.26 4.96
3057 4300 1.728672 GTCGAAAAACGCCCCACAA 59.271 52.632 0.00 0.00 42.26 3.33
3063 4306 2.286127 AAAACGCCCCACAACAACCG 62.286 55.000 0.00 0.00 0.00 4.44
3066 4309 2.517402 GCCCCACAACAACCGTGA 60.517 61.111 0.00 0.00 36.43 4.35
3074 4317 0.238289 CAACAACCGTGACTCCATGC 59.762 55.000 0.00 0.00 0.00 4.06
3081 4324 3.002583 TGACTCCATGCCGCCTCA 61.003 61.111 0.00 0.00 0.00 3.86
3087 4330 4.758251 CATGCCGCCTCACCGTCA 62.758 66.667 0.00 0.00 0.00 4.35
3112 4355 1.604308 CAGCCACCTGGTTGCATCA 60.604 57.895 23.06 0.00 39.51 3.07
3122 4365 1.485895 TGGTTGCATCATCGATGGAGA 59.514 47.619 24.61 6.65 41.08 3.71
3137 4380 3.762407 TGGAGATTTCTGTCGTTCCAA 57.238 42.857 0.00 0.00 32.15 3.53
3143 4386 5.578776 AGATTTCTGTCGTTCCAACAAAAC 58.421 37.500 0.00 0.00 0.00 2.43
3144 4387 5.357032 AGATTTCTGTCGTTCCAACAAAACT 59.643 36.000 0.00 0.00 0.00 2.66
3145 4388 6.540914 AGATTTCTGTCGTTCCAACAAAACTA 59.459 34.615 0.00 0.00 0.00 2.24
3184 4428 3.526931 TGCAACACTAGATGTAGCTCC 57.473 47.619 0.00 0.00 42.31 4.70
3185 4429 2.159240 TGCAACACTAGATGTAGCTCCG 60.159 50.000 0.00 0.00 42.31 4.63
3186 4430 2.799917 GCAACACTAGATGTAGCTCCGG 60.800 54.545 0.00 0.00 42.31 5.14
3207 4451 3.900892 CGCCGACGCTCTACCCAT 61.901 66.667 0.00 0.00 0.00 4.00
3213 4458 0.535335 GACGCTCTACCCATTCACCA 59.465 55.000 0.00 0.00 0.00 4.17
3229 4474 2.768527 TCACCAATGGTTCCAGCAAAAA 59.231 40.909 0.16 0.00 31.02 1.94
3268 4513 2.717639 AAAATCCCGCTAGATGCAGT 57.282 45.000 0.00 0.00 43.06 4.40
3270 4515 2.717639 AATCCCGCTAGATGCAGTTT 57.282 45.000 0.00 0.00 43.06 2.66
3274 4519 0.807667 CCGCTAGATGCAGTTTCGCT 60.808 55.000 0.00 0.00 43.06 4.93
3283 4528 3.373020 CAGTTTCGCTGCATGTCAC 57.627 52.632 0.00 0.00 38.52 3.67
3285 4530 1.154413 GTTTCGCTGCATGTCACCG 60.154 57.895 0.00 0.00 0.00 4.94
3290 4535 2.620112 GCTGCATGTCACCGCTTGT 61.620 57.895 0.00 0.00 0.00 3.16
3292 4537 0.386352 CTGCATGTCACCGCTTGTTG 60.386 55.000 0.00 0.00 0.00 3.33
3297 4542 0.179070 TGTCACCGCTTGTTGTAGCA 60.179 50.000 0.00 0.00 41.28 3.49
3300 4545 2.031157 GTCACCGCTTGTTGTAGCATTT 60.031 45.455 0.00 0.00 41.28 2.32
3304 4549 2.031245 CCGCTTGTTGTAGCATTTGTCA 60.031 45.455 0.00 0.00 41.28 3.58
3305 4550 3.366273 CCGCTTGTTGTAGCATTTGTCAT 60.366 43.478 0.00 0.00 41.28 3.06
3307 4552 3.848019 GCTTGTTGTAGCATTTGTCATCG 59.152 43.478 0.00 0.00 40.89 3.84
3308 4553 3.469899 TGTTGTAGCATTTGTCATCGC 57.530 42.857 0.00 0.00 0.00 4.58
3311 4556 4.082841 TGTTGTAGCATTTGTCATCGCATT 60.083 37.500 0.00 0.00 0.00 3.56
3317 4562 3.429543 GCATTTGTCATCGCATTTGTTGT 59.570 39.130 0.00 0.00 0.00 3.32
3319 4564 5.220080 GCATTTGTCATCGCATTTGTTGTAG 60.220 40.000 0.00 0.00 0.00 2.74
3327 4572 2.786578 CGCATTTGTTGTAGCAAAACGT 59.213 40.909 9.91 0.00 41.03 3.99
3328 4573 3.360574 CGCATTTGTTGTAGCAAAACGTG 60.361 43.478 0.00 3.87 41.03 4.49
3375 4620 1.460273 GGTTCCAGCTTTTTCCGGCA 61.460 55.000 0.00 0.00 0.00 5.69
3411 4656 2.024871 CGCCCGTTGTCGCAAAAA 59.975 55.556 0.00 0.00 35.54 1.94
3438 4683 3.832527 ACAGGTTGTAGCACTTTGGATT 58.167 40.909 0.00 0.00 0.00 3.01
3439 4684 3.569701 ACAGGTTGTAGCACTTTGGATTG 59.430 43.478 0.00 0.00 0.00 2.67
3446 4691 1.501741 CACTTTGGATTGCCGGTCG 59.498 57.895 1.90 0.00 36.79 4.79
3449 4694 0.725117 CTTTGGATTGCCGGTCGTAC 59.275 55.000 1.90 0.00 36.79 3.67
3453 4698 0.390124 GGATTGCCGGTCGTACCATA 59.610 55.000 1.90 0.00 38.47 2.74
3455 4700 2.231964 GGATTGCCGGTCGTACCATATA 59.768 50.000 1.90 0.00 38.47 0.86
3477 4722 3.143338 TGCCGGTTGTAGCACAGA 58.857 55.556 1.90 0.00 33.08 3.41
3478 4723 1.005037 TGCCGGTTGTAGCACAGAG 60.005 57.895 1.90 0.00 33.08 3.35
3479 4724 1.292223 GCCGGTTGTAGCACAGAGA 59.708 57.895 1.90 0.00 0.00 3.10
3480 4725 1.014564 GCCGGTTGTAGCACAGAGAC 61.015 60.000 1.90 0.00 0.00 3.36
3481 4726 0.603569 CCGGTTGTAGCACAGAGACT 59.396 55.000 0.00 0.00 0.00 3.24
3482 4727 1.402984 CCGGTTGTAGCACAGAGACTC 60.403 57.143 0.00 0.00 0.00 3.36
3483 4728 1.729472 CGGTTGTAGCACAGAGACTCG 60.729 57.143 0.00 0.00 0.00 4.18
3484 4729 1.341606 GTTGTAGCACAGAGACTCGC 58.658 55.000 0.00 0.00 0.00 5.03
3485 4730 1.068194 GTTGTAGCACAGAGACTCGCT 60.068 52.381 8.20 8.20 38.51 4.93
3486 4731 0.523519 TGTAGCACAGAGACTCGCTG 59.476 55.000 12.12 8.15 37.31 5.18
3487 4732 0.179150 GTAGCACAGAGACTCGCTGG 60.179 60.000 13.63 4.76 35.65 4.85
3488 4733 0.609406 TAGCACAGAGACTCGCTGGT 60.609 55.000 13.63 11.37 35.65 4.00
3489 4734 1.005630 GCACAGAGACTCGCTGGTT 60.006 57.895 13.63 0.00 35.65 3.67
3490 4735 1.011451 GCACAGAGACTCGCTGGTTC 61.011 60.000 13.63 0.00 35.65 3.62
3491 4736 0.389166 CACAGAGACTCGCTGGTTCC 60.389 60.000 13.63 0.00 35.65 3.62
3492 4737 0.827925 ACAGAGACTCGCTGGTTCCA 60.828 55.000 13.63 0.00 35.65 3.53
3493 4738 0.108898 CAGAGACTCGCTGGTTCCAG 60.109 60.000 13.88 13.88 37.15 3.86
3504 4749 3.473923 CTGGTTCCAGCAAAAATGGTT 57.526 42.857 5.89 0.00 39.01 3.67
3505 4750 3.392882 CTGGTTCCAGCAAAAATGGTTC 58.607 45.455 5.89 0.00 39.01 3.62
3506 4751 2.103941 TGGTTCCAGCAAAAATGGTTCC 59.896 45.455 0.00 0.00 39.01 3.62
3507 4752 2.368548 GGTTCCAGCAAAAATGGTTCCT 59.631 45.455 0.00 0.00 39.01 3.36
3508 4753 3.392882 GTTCCAGCAAAAATGGTTCCTG 58.607 45.455 0.00 0.00 39.01 3.86
3509 4754 1.969923 TCCAGCAAAAATGGTTCCTGG 59.030 47.619 0.00 0.00 40.84 4.45
3510 4755 1.693606 CCAGCAAAAATGGTTCCTGGT 59.306 47.619 0.00 0.00 36.10 4.00
3511 4756 2.104622 CCAGCAAAAATGGTTCCTGGTT 59.895 45.455 0.00 0.00 36.10 3.67
3512 4757 3.392882 CAGCAAAAATGGTTCCTGGTTC 58.607 45.455 0.00 0.00 0.00 3.62
3513 4758 2.035832 AGCAAAAATGGTTCCTGGTTCG 59.964 45.455 0.00 0.00 0.00 3.95
3514 4759 2.403259 CAAAAATGGTTCCTGGTTCGC 58.597 47.619 0.00 0.00 0.00 4.70
3515 4760 1.698506 AAAATGGTTCCTGGTTCGCA 58.301 45.000 0.00 0.00 0.00 5.10
3516 4761 0.958822 AAATGGTTCCTGGTTCGCAC 59.041 50.000 0.00 0.00 0.00 5.34
3517 4762 1.234615 AATGGTTCCTGGTTCGCACG 61.235 55.000 0.00 0.00 0.00 5.34
3518 4763 2.280592 GGTTCCTGGTTCGCACGT 60.281 61.111 0.00 0.00 0.00 4.49
3519 4764 2.315386 GGTTCCTGGTTCGCACGTC 61.315 63.158 0.00 0.00 0.00 4.34
3520 4765 2.355363 TTCCTGGTTCGCACGTCG 60.355 61.111 0.00 0.00 40.15 5.12
3521 4766 3.141522 TTCCTGGTTCGCACGTCGT 62.142 57.895 0.00 0.00 39.67 4.34
3522 4767 3.403057 CCTGGTTCGCACGTCGTG 61.403 66.667 21.02 21.02 39.67 4.35
3523 4768 2.657296 CTGGTTCGCACGTCGTGT 60.657 61.111 25.18 0.00 39.67 4.49
3524 4769 2.645510 CTGGTTCGCACGTCGTGTC 61.646 63.158 25.18 16.45 39.67 3.67
3525 4770 3.400590 GGTTCGCACGTCGTGTCC 61.401 66.667 25.18 17.79 39.67 4.02
3526 4771 3.400590 GTTCGCACGTCGTGTCCC 61.401 66.667 25.18 9.10 39.67 4.46
3527 4772 4.651008 TTCGCACGTCGTGTCCCC 62.651 66.667 25.18 8.75 39.67 4.81
3530 4775 4.309950 GCACGTCGTGTCCCCCTT 62.310 66.667 25.18 0.00 35.75 3.95
3531 4776 2.357034 CACGTCGTGTCCCCCTTG 60.357 66.667 17.30 0.00 0.00 3.61
3532 4777 2.841044 ACGTCGTGTCCCCCTTGT 60.841 61.111 0.00 0.00 0.00 3.16
3533 4778 1.531365 ACGTCGTGTCCCCCTTGTA 60.531 57.895 0.00 0.00 0.00 2.41
3534 4779 1.214589 CGTCGTGTCCCCCTTGTAG 59.785 63.158 0.00 0.00 0.00 2.74
3535 4780 1.079336 GTCGTGTCCCCCTTGTAGC 60.079 63.158 0.00 0.00 0.00 3.58
3536 4781 1.229082 TCGTGTCCCCCTTGTAGCT 60.229 57.895 0.00 0.00 0.00 3.32
3537 4782 0.834687 TCGTGTCCCCCTTGTAGCTT 60.835 55.000 0.00 0.00 0.00 3.74
3538 4783 0.036306 CGTGTCCCCCTTGTAGCTTT 59.964 55.000 0.00 0.00 0.00 3.51
3539 4784 1.544759 CGTGTCCCCCTTGTAGCTTTT 60.545 52.381 0.00 0.00 0.00 2.27
3540 4785 2.594131 GTGTCCCCCTTGTAGCTTTTT 58.406 47.619 0.00 0.00 0.00 1.94
3555 4800 3.298958 TTTTTGCCACCCGTTGCA 58.701 50.000 0.00 0.00 35.27 4.08
3556 4801 1.596934 TTTTTGCCACCCGTTGCAA 59.403 47.368 0.00 0.00 45.12 4.08
3557 4802 0.741221 TTTTTGCCACCCGTTGCAAC 60.741 50.000 19.89 19.89 46.32 4.17
3558 4803 1.888436 TTTTGCCACCCGTTGCAACA 61.888 50.000 28.01 4.95 46.32 3.33
3559 4804 1.680522 TTTGCCACCCGTTGCAACAT 61.681 50.000 28.01 11.00 46.32 2.71
3560 4805 2.049248 GCCACCCGTTGCAACATG 60.049 61.111 28.01 20.94 0.00 3.21
3561 4806 2.855514 GCCACCCGTTGCAACATGT 61.856 57.895 28.01 20.42 0.00 3.21
3562 4807 1.519751 GCCACCCGTTGCAACATGTA 61.520 55.000 28.01 0.00 0.00 2.29
3563 4808 0.239879 CCACCCGTTGCAACATGTAC 59.760 55.000 28.01 1.84 0.00 2.90
3564 4809 0.110419 CACCCGTTGCAACATGTACG 60.110 55.000 28.01 14.43 0.00 3.67
3565 4810 1.154301 CCCGTTGCAACATGTACGC 60.154 57.895 28.01 12.25 32.97 4.42
3566 4811 1.154301 CCGTTGCAACATGTACGCC 60.154 57.895 28.01 0.00 32.97 5.68
3567 4812 1.508954 CGTTGCAACATGTACGCCG 60.509 57.895 28.01 8.09 0.00 6.46
3568 4813 1.795962 GTTGCAACATGTACGCCGC 60.796 57.895 24.52 7.27 0.00 6.53
3569 4814 2.972144 TTGCAACATGTACGCCGCC 61.972 57.895 15.45 0.00 0.00 6.13
3570 4815 4.514569 GCAACATGTACGCCGCCG 62.515 66.667 0.00 0.00 41.14 6.46
3571 4816 3.860125 CAACATGTACGCCGCCGG 61.860 66.667 0.00 0.00 39.22 6.13
3572 4817 4.382320 AACATGTACGCCGCCGGT 62.382 61.111 4.45 0.00 39.22 5.28
3573 4818 3.887335 AACATGTACGCCGCCGGTT 62.887 57.895 4.45 0.00 39.22 4.44
3574 4819 3.560278 CATGTACGCCGCCGGTTC 61.560 66.667 4.45 0.00 39.22 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.573133 CAAAGTCTTGATACACTGAAAACTTTT 57.427 29.630 0.00 0.00 33.48 2.27
46 47 8.739972 ACAAAGTCTTGATACACTGAAAACTTT 58.260 29.630 0.00 0.00 35.46 2.66
47 48 8.281212 ACAAAGTCTTGATACACTGAAAACTT 57.719 30.769 0.00 0.00 36.33 2.66
48 49 7.865706 ACAAAGTCTTGATACACTGAAAACT 57.134 32.000 0.00 0.00 36.33 2.66
49 50 8.181573 TGAACAAAGTCTTGATACACTGAAAAC 58.818 33.333 0.00 0.00 36.33 2.43
50 51 8.181573 GTGAACAAAGTCTTGATACACTGAAAA 58.818 33.333 0.00 0.00 36.33 2.29
51 52 7.335673 TGTGAACAAAGTCTTGATACACTGAAA 59.664 33.333 0.00 0.00 36.02 2.69
52 53 6.821160 TGTGAACAAAGTCTTGATACACTGAA 59.179 34.615 0.00 0.00 36.02 3.02
53 54 6.345298 TGTGAACAAAGTCTTGATACACTGA 58.655 36.000 0.00 0.00 36.02 3.41
54 55 6.603237 TGTGAACAAAGTCTTGATACACTG 57.397 37.500 0.00 0.00 36.02 3.66
55 56 9.507329 AATATGTGAACAAAGTCTTGATACACT 57.493 29.630 0.00 0.00 36.02 3.55
56 57 9.760660 GAATATGTGAACAAAGTCTTGATACAC 57.239 33.333 0.00 0.00 36.33 2.90
57 58 9.725019 AGAATATGTGAACAAAGTCTTGATACA 57.275 29.630 0.00 0.00 36.33 2.29
58 59 9.979270 CAGAATATGTGAACAAAGTCTTGATAC 57.021 33.333 0.00 0.00 36.33 2.24
59 60 9.942850 TCAGAATATGTGAACAAAGTCTTGATA 57.057 29.630 0.00 0.00 36.33 2.15
60 61 8.853077 TCAGAATATGTGAACAAAGTCTTGAT 57.147 30.769 0.00 0.00 36.33 2.57
61 62 8.675705 TTCAGAATATGTGAACAAAGTCTTGA 57.324 30.769 0.00 0.00 36.33 3.02
62 63 9.734620 TTTTCAGAATATGTGAACAAAGTCTTG 57.265 29.630 1.13 0.00 33.63 3.02
64 65 9.903682 CATTTTCAGAATATGTGAACAAAGTCT 57.096 29.630 5.62 0.00 33.63 3.24
65 66 9.683069 ACATTTTCAGAATATGTGAACAAAGTC 57.317 29.630 16.02 0.00 33.63 3.01
70 71 9.681692 CTTGAACATTTTCAGAATATGTGAACA 57.318 29.630 17.10 14.52 42.79 3.18
71 72 9.897744 TCTTGAACATTTTCAGAATATGTGAAC 57.102 29.630 17.10 12.75 42.79 3.18
89 90 9.936759 ACAAGAAAAACCTAAAAATCTTGAACA 57.063 25.926 17.35 0.00 43.93 3.18
98 99 9.640963 TCGAAATTGACAAGAAAAACCTAAAAA 57.359 25.926 0.00 0.00 0.00 1.94
99 100 9.640963 TTCGAAATTGACAAGAAAAACCTAAAA 57.359 25.926 0.00 0.00 0.00 1.52
100 101 9.640963 TTTCGAAATTGACAAGAAAAACCTAAA 57.359 25.926 6.47 0.00 0.00 1.85
101 102 9.640963 TTTTCGAAATTGACAAGAAAAACCTAA 57.359 25.926 12.12 0.00 37.71 2.69
102 103 9.296400 CTTTTCGAAATTGACAAGAAAAACCTA 57.704 29.630 12.12 0.00 39.37 3.08
103 104 7.817478 ACTTTTCGAAATTGACAAGAAAAACCT 59.183 29.630 12.12 0.25 39.37 3.50
104 105 7.897800 CACTTTTCGAAATTGACAAGAAAAACC 59.102 33.333 12.12 0.00 39.37 3.27
105 106 8.432359 ACACTTTTCGAAATTGACAAGAAAAAC 58.568 29.630 20.95 0.00 39.37 2.43
106 107 8.527567 ACACTTTTCGAAATTGACAAGAAAAA 57.472 26.923 20.95 0.00 39.37 1.94
107 108 7.007905 CGACACTTTTCGAAATTGACAAGAAAA 59.992 33.333 20.95 10.75 41.78 2.29
108 109 6.467682 CGACACTTTTCGAAATTGACAAGAAA 59.532 34.615 20.95 0.00 41.78 2.52
109 110 5.963004 CGACACTTTTCGAAATTGACAAGAA 59.037 36.000 20.95 0.98 41.78 2.52
110 111 5.498159 CGACACTTTTCGAAATTGACAAGA 58.502 37.500 20.95 1.61 41.78 3.02
111 112 4.144731 GCGACACTTTTCGAAATTGACAAG 59.855 41.667 20.95 13.22 41.78 3.16
112 113 4.032355 GCGACACTTTTCGAAATTGACAA 58.968 39.130 20.95 2.90 41.78 3.18
113 114 3.311322 AGCGACACTTTTCGAAATTGACA 59.689 39.130 20.95 3.54 41.78 3.58
114 115 3.873529 AGCGACACTTTTCGAAATTGAC 58.126 40.909 20.95 15.52 41.78 3.18
115 116 4.545823 AAGCGACACTTTTCGAAATTGA 57.454 36.364 20.95 4.20 41.78 2.57
141 142 8.936864 TGGACATTATTTTGAAAACGTGTTTTT 58.063 25.926 11.63 0.00 42.26 1.94
142 143 8.384365 GTGGACATTATTTTGAAAACGTGTTTT 58.616 29.630 10.29 10.29 44.59 2.43
143 144 7.762159 AGTGGACATTATTTTGAAAACGTGTTT 59.238 29.630 0.00 0.00 0.00 2.83
144 145 7.262048 AGTGGACATTATTTTGAAAACGTGTT 58.738 30.769 0.00 0.00 0.00 3.32
145 146 6.801575 AGTGGACATTATTTTGAAAACGTGT 58.198 32.000 0.00 0.00 0.00 4.49
146 147 7.692908 AAGTGGACATTATTTTGAAAACGTG 57.307 32.000 0.00 0.00 0.00 4.49
147 148 7.223777 CCAAAGTGGACATTATTTTGAAAACGT 59.776 33.333 0.00 0.00 40.96 3.99
148 149 7.307101 CCCAAAGTGGACATTATTTTGAAAACG 60.307 37.037 0.00 0.00 40.96 3.60
149 150 7.713073 TCCCAAAGTGGACATTATTTTGAAAAC 59.287 33.333 0.00 0.00 40.96 2.43
150 151 7.796054 TCCCAAAGTGGACATTATTTTGAAAA 58.204 30.769 0.00 0.00 40.96 2.29
151 152 7.366847 TCCCAAAGTGGACATTATTTTGAAA 57.633 32.000 0.00 0.00 40.96 2.69
152 153 6.985653 TCCCAAAGTGGACATTATTTTGAA 57.014 33.333 0.00 0.00 40.96 2.69
153 154 6.985653 TTCCCAAAGTGGACATTATTTTGA 57.014 33.333 0.00 0.00 40.96 2.69
154 155 8.505625 CAAATTCCCAAAGTGGACATTATTTTG 58.494 33.333 0.00 0.00 40.96 2.44
155 156 8.435982 TCAAATTCCCAAAGTGGACATTATTTT 58.564 29.630 0.00 0.00 40.96 1.82
156 157 7.972301 TCAAATTCCCAAAGTGGACATTATTT 58.028 30.769 0.00 0.00 40.96 1.40
157 158 7.552050 TCAAATTCCCAAAGTGGACATTATT 57.448 32.000 0.00 0.00 40.96 1.40
158 159 7.552050 TTCAAATTCCCAAAGTGGACATTAT 57.448 32.000 0.00 0.00 40.96 1.28
159 160 6.985653 TTCAAATTCCCAAAGTGGACATTA 57.014 33.333 0.00 0.00 40.96 1.90
160 161 5.885449 TTCAAATTCCCAAAGTGGACATT 57.115 34.783 0.00 0.00 40.96 2.71
161 162 5.885449 TTTCAAATTCCCAAAGTGGACAT 57.115 34.783 0.00 0.00 40.96 3.06
162 163 5.683876 TTTTCAAATTCCCAAAGTGGACA 57.316 34.783 0.00 0.00 40.96 4.02
185 186 9.740710 GCTAAGGATAATATAGGTCCAAACATT 57.259 33.333 0.00 0.00 34.42 2.71
186 187 9.117223 AGCTAAGGATAATATAGGTCCAAACAT 57.883 33.333 0.00 0.00 34.42 2.71
187 188 8.506196 AGCTAAGGATAATATAGGTCCAAACA 57.494 34.615 0.00 0.00 34.42 2.83
188 189 9.438228 GAAGCTAAGGATAATATAGGTCCAAAC 57.562 37.037 0.00 0.00 34.42 2.93
189 190 8.311836 CGAAGCTAAGGATAATATAGGTCCAAA 58.688 37.037 0.00 0.00 34.42 3.28
190 191 7.837863 CGAAGCTAAGGATAATATAGGTCCAA 58.162 38.462 0.00 0.00 34.42 3.53
191 192 7.406031 CGAAGCTAAGGATAATATAGGTCCA 57.594 40.000 0.00 0.00 34.42 4.02
211 212 1.297598 CTTTATTGGCCGCGCGAAG 60.298 57.895 34.63 20.69 28.65 3.79
212 213 2.788581 CTTTATTGGCCGCGCGAA 59.211 55.556 34.63 18.99 0.00 4.70
213 214 3.871574 GCTTTATTGGCCGCGCGA 61.872 61.111 34.63 12.32 0.00 5.87
214 215 3.790256 GAGCTTTATTGGCCGCGCG 62.790 63.158 25.67 25.67 0.00 6.86
215 216 2.024729 GAGCTTTATTGGCCGCGC 59.975 61.111 0.00 0.00 0.00 6.86
216 217 0.040958 GATGAGCTTTATTGGCCGCG 60.041 55.000 0.00 0.00 0.00 6.46
217 218 1.312815 AGATGAGCTTTATTGGCCGC 58.687 50.000 0.00 0.00 0.00 6.53
230 231 0.030773 TAGCCAACGCGCTAGATGAG 59.969 55.000 5.73 0.00 40.39 2.90
231 232 0.673985 ATAGCCAACGCGCTAGATGA 59.326 50.000 5.73 0.00 44.28 2.92
232 233 0.786581 CATAGCCAACGCGCTAGATG 59.213 55.000 5.73 0.00 44.28 2.90
233 234 0.946221 GCATAGCCAACGCGCTAGAT 60.946 55.000 5.73 0.00 44.28 1.98
234 235 1.591594 GCATAGCCAACGCGCTAGA 60.592 57.895 5.73 0.00 44.28 2.43
235 236 1.552348 GAGCATAGCCAACGCGCTAG 61.552 60.000 5.73 0.00 44.28 3.42
236 237 1.591594 GAGCATAGCCAACGCGCTA 60.592 57.895 5.73 0.00 45.11 4.26
237 238 2.859273 AAGAGCATAGCCAACGCGCT 62.859 55.000 5.73 0.00 43.09 5.92
238 239 1.982073 AAAGAGCATAGCCAACGCGC 61.982 55.000 5.73 0.00 41.18 6.86
239 240 0.026803 GAAAGAGCATAGCCAACGCG 59.973 55.000 3.53 3.53 41.18 6.01
240 241 0.378610 GGAAAGAGCATAGCCAACGC 59.621 55.000 0.00 0.00 0.00 4.84
241 242 1.667724 CAGGAAAGAGCATAGCCAACG 59.332 52.381 0.00 0.00 0.00 4.10
242 243 2.019984 CCAGGAAAGAGCATAGCCAAC 58.980 52.381 0.00 0.00 0.00 3.77
243 244 1.683011 GCCAGGAAAGAGCATAGCCAA 60.683 52.381 0.00 0.00 0.00 4.52
244 245 0.107017 GCCAGGAAAGAGCATAGCCA 60.107 55.000 0.00 0.00 0.00 4.75
245 246 0.107017 TGCCAGGAAAGAGCATAGCC 60.107 55.000 0.00 0.00 0.00 3.93
246 247 1.978454 ATGCCAGGAAAGAGCATAGC 58.022 50.000 0.00 0.00 45.10 2.97
247 248 3.317430 GGAAATGCCAGGAAAGAGCATAG 59.683 47.826 0.00 0.00 46.17 2.23
248 249 3.053395 AGGAAATGCCAGGAAAGAGCATA 60.053 43.478 0.00 0.00 46.17 3.14
250 251 1.076024 AGGAAATGCCAGGAAAGAGCA 59.924 47.619 0.00 0.00 41.50 4.26
251 252 1.844687 AGGAAATGCCAGGAAAGAGC 58.155 50.000 0.00 0.00 40.02 4.09
252 253 3.696548 GGTTAGGAAATGCCAGGAAAGAG 59.303 47.826 0.00 0.00 40.02 2.85
253 254 3.075283 TGGTTAGGAAATGCCAGGAAAGA 59.925 43.478 0.00 0.00 40.02 2.52
254 255 3.430453 TGGTTAGGAAATGCCAGGAAAG 58.570 45.455 0.00 0.00 40.02 2.62
255 256 3.430453 CTGGTTAGGAAATGCCAGGAAA 58.570 45.455 0.00 0.00 43.39 3.13
256 257 3.085952 CTGGTTAGGAAATGCCAGGAA 57.914 47.619 0.00 0.00 43.39 3.36
257 258 2.806945 CTGGTTAGGAAATGCCAGGA 57.193 50.000 0.00 0.00 43.39 3.86
260 261 4.083565 GGTTTACTGGTTAGGAAATGCCA 58.916 43.478 0.00 0.00 38.92 4.92
261 262 4.341487 AGGTTTACTGGTTAGGAAATGCC 58.659 43.478 0.00 0.00 38.92 4.40
262 263 7.640597 AATAGGTTTACTGGTTAGGAAATGC 57.359 36.000 0.00 0.00 38.92 3.56
263 264 8.823818 CGTAATAGGTTTACTGGTTAGGAAATG 58.176 37.037 0.00 0.00 38.92 2.32
264 265 8.542926 ACGTAATAGGTTTACTGGTTAGGAAAT 58.457 33.333 0.00 0.00 38.92 2.17
265 266 7.818930 CACGTAATAGGTTTACTGGTTAGGAAA 59.181 37.037 0.00 0.00 34.34 3.13
266 267 7.322664 CACGTAATAGGTTTACTGGTTAGGAA 58.677 38.462 0.00 0.00 0.00 3.36
267 268 6.627953 GCACGTAATAGGTTTACTGGTTAGGA 60.628 42.308 0.00 0.00 0.00 2.94
268 269 5.521372 GCACGTAATAGGTTTACTGGTTAGG 59.479 44.000 0.00 0.00 0.00 2.69
269 270 6.101332 TGCACGTAATAGGTTTACTGGTTAG 58.899 40.000 0.00 0.00 0.00 2.34
270 271 6.035368 TGCACGTAATAGGTTTACTGGTTA 57.965 37.500 0.00 0.00 0.00 2.85
271 272 4.897140 TGCACGTAATAGGTTTACTGGTT 58.103 39.130 0.00 0.00 0.00 3.67
272 273 4.540359 TGCACGTAATAGGTTTACTGGT 57.460 40.909 0.00 0.00 0.00 4.00
273 274 6.431198 AAATGCACGTAATAGGTTTACTGG 57.569 37.500 0.00 0.00 0.00 4.00
274 275 7.302524 ACAAAATGCACGTAATAGGTTTACTG 58.697 34.615 0.00 0.00 0.00 2.74
275 276 7.443259 ACAAAATGCACGTAATAGGTTTACT 57.557 32.000 0.00 0.00 0.00 2.24
276 277 9.609950 TTAACAAAATGCACGTAATAGGTTTAC 57.390 29.630 0.00 0.00 0.00 2.01
277 278 9.609950 GTTAACAAAATGCACGTAATAGGTTTA 57.390 29.630 0.00 0.00 0.00 2.01
278 279 8.354426 AGTTAACAAAATGCACGTAATAGGTTT 58.646 29.630 8.61 0.00 0.00 3.27
279 280 7.806014 CAGTTAACAAAATGCACGTAATAGGTT 59.194 33.333 8.61 0.00 0.00 3.50
280 281 7.302524 CAGTTAACAAAATGCACGTAATAGGT 58.697 34.615 8.61 0.00 0.00 3.08
281 282 6.745450 CCAGTTAACAAAATGCACGTAATAGG 59.255 38.462 8.61 0.00 0.00 2.57
282 283 6.250527 GCCAGTTAACAAAATGCACGTAATAG 59.749 38.462 8.61 0.00 0.00 1.73
283 284 6.087522 GCCAGTTAACAAAATGCACGTAATA 58.912 36.000 8.61 0.00 0.00 0.98
284 285 4.920927 GCCAGTTAACAAAATGCACGTAAT 59.079 37.500 8.61 0.00 0.00 1.89
285 286 4.291783 GCCAGTTAACAAAATGCACGTAA 58.708 39.130 8.61 0.00 0.00 3.18
286 287 3.607310 CGCCAGTTAACAAAATGCACGTA 60.607 43.478 8.61 0.00 0.00 3.57
352 354 9.839589 CACAGAATTTTCAAAAGAAAAATCGAG 57.160 29.630 7.38 9.03 38.37 4.04
353 355 9.579768 TCACAGAATTTTCAAAAGAAAAATCGA 57.420 25.926 7.38 0.00 38.37 3.59
757 889 3.169908 GGAAAGAGGGGAGCTCCTATAG 58.830 54.545 31.36 0.00 37.25 1.31
782 914 6.481954 AAAAGAATGCGAACCTACTGTTAG 57.518 37.500 0.00 0.00 37.29 2.34
783 915 6.870971 AAAAAGAATGCGAACCTACTGTTA 57.129 33.333 0.00 0.00 37.29 2.41
784 916 5.767816 AAAAAGAATGCGAACCTACTGTT 57.232 34.783 0.00 0.00 40.81 3.16
804 936 4.093556 GCAACACGGTGAAAAATCCAAAAA 59.906 37.500 16.29 0.00 0.00 1.94
805 937 3.619038 GCAACACGGTGAAAAATCCAAAA 59.381 39.130 16.29 0.00 0.00 2.44
806 938 3.190874 GCAACACGGTGAAAAATCCAAA 58.809 40.909 16.29 0.00 0.00 3.28
807 939 2.796383 CGCAACACGGTGAAAAATCCAA 60.796 45.455 16.29 0.00 38.44 3.53
808 940 1.268794 CGCAACACGGTGAAAAATCCA 60.269 47.619 16.29 0.00 38.44 3.41
809 941 1.404477 CGCAACACGGTGAAAAATCC 58.596 50.000 16.29 0.00 38.44 3.01
820 952 2.483288 GCCCATTACCGCAACACG 59.517 61.111 0.00 0.00 43.15 4.49
821 953 2.882132 GGCCCATTACCGCAACAC 59.118 61.111 0.00 0.00 0.00 3.32
822 954 2.748251 CGGCCCATTACCGCAACA 60.748 61.111 0.00 0.00 44.90 3.33
860 992 2.780149 AAATTGCCGAGCGAACGCAC 62.780 55.000 20.66 13.61 44.88 5.34
861 993 2.612567 AAATTGCCGAGCGAACGCA 61.613 52.632 20.66 0.00 44.88 5.24
862 994 2.145905 CAAATTGCCGAGCGAACGC 61.146 57.895 11.31 11.31 42.33 4.84
863 995 2.145905 GCAAATTGCCGAGCGAACG 61.146 57.895 6.72 0.00 37.42 3.95
864 996 3.754091 GCAAATTGCCGAGCGAAC 58.246 55.556 6.72 0.00 37.42 3.95
873 1005 1.711500 GCTCATTGCGGCAAATTGC 59.289 52.632 20.48 18.20 44.08 3.56
884 1016 2.739704 TTTCTCGCGCCGCTCATTG 61.740 57.895 7.78 0.00 0.00 2.82
885 1017 2.434185 TTTCTCGCGCCGCTCATT 60.434 55.556 7.78 0.00 0.00 2.57
886 1018 3.188786 GTTTCTCGCGCCGCTCAT 61.189 61.111 7.78 0.00 0.00 2.90
928 1060 3.768833 TATGGACGGGAGGGAGGGC 62.769 68.421 0.00 0.00 0.00 5.19
929 1061 0.693092 TTTATGGACGGGAGGGAGGG 60.693 60.000 0.00 0.00 0.00 4.30
930 1062 1.435256 ATTTATGGACGGGAGGGAGG 58.565 55.000 0.00 0.00 0.00 4.30
931 1063 3.006967 CAGTATTTATGGACGGGAGGGAG 59.993 52.174 0.00 0.00 0.00 4.30
932 1064 2.969950 CAGTATTTATGGACGGGAGGGA 59.030 50.000 0.00 0.00 0.00 4.20
1009 1141 4.647291 AGTGACGTCGAGCAAATTAAAG 57.353 40.909 11.62 0.00 0.00 1.85
1213 1352 2.121506 AGGTCCTGGGAGCCCAAA 60.122 61.111 9.94 0.00 46.63 3.28
1303 1442 0.676466 ATTTGTCCGCGAAGATGCCA 60.676 50.000 8.23 0.00 0.00 4.92
1505 1649 5.801444 CGTTAGTTTTTCCCTTCGTGTTTTT 59.199 36.000 0.00 0.00 0.00 1.94
1506 1650 5.123661 TCGTTAGTTTTTCCCTTCGTGTTTT 59.876 36.000 0.00 0.00 0.00 2.43
1507 1651 4.635324 TCGTTAGTTTTTCCCTTCGTGTTT 59.365 37.500 0.00 0.00 0.00 2.83
1508 1652 4.190772 TCGTTAGTTTTTCCCTTCGTGTT 58.809 39.130 0.00 0.00 0.00 3.32
1509 1653 3.795877 TCGTTAGTTTTTCCCTTCGTGT 58.204 40.909 0.00 0.00 0.00 4.49
1510 1654 6.146673 ACTTATCGTTAGTTTTTCCCTTCGTG 59.853 38.462 0.00 0.00 0.00 4.35
1511 1655 6.226052 ACTTATCGTTAGTTTTTCCCTTCGT 58.774 36.000 0.00 0.00 0.00 3.85
1512 1656 6.716898 ACTTATCGTTAGTTTTTCCCTTCG 57.283 37.500 0.00 0.00 0.00 3.79
1513 1657 7.201470 CCGTACTTATCGTTAGTTTTTCCCTTC 60.201 40.741 0.00 0.00 0.00 3.46
1514 1658 6.591448 CCGTACTTATCGTTAGTTTTTCCCTT 59.409 38.462 0.00 0.00 0.00 3.95
1515 1659 6.101997 CCGTACTTATCGTTAGTTTTTCCCT 58.898 40.000 0.00 0.00 0.00 4.20
1516 1660 5.220472 GCCGTACTTATCGTTAGTTTTTCCC 60.220 44.000 0.00 0.00 0.00 3.97
1517 1661 5.348451 TGCCGTACTTATCGTTAGTTTTTCC 59.652 40.000 0.00 0.00 0.00 3.13
1518 1662 6.393720 TGCCGTACTTATCGTTAGTTTTTC 57.606 37.500 0.00 0.00 0.00 2.29
1563 1712 6.293735 CCATGCAATGCAAAATCAGTTTCTTT 60.294 34.615 13.45 0.00 44.97 2.52
2033 2182 2.829384 GGGTTGACCACCTGCTGGA 61.829 63.158 17.64 0.00 46.38 3.86
2035 2184 2.669569 CGGGTTGACCACCTGCTG 60.670 66.667 2.12 0.00 45.54 4.41
2200 2349 2.125912 GCACATCTGCTCGACGGT 60.126 61.111 0.00 0.00 40.63 4.83
2272 2421 0.825010 GGGCTATAGGTCGGGTTCGA 60.825 60.000 1.04 0.00 43.86 3.71
2446 2612 1.442526 GATCCATCACGGCCTTGCTG 61.443 60.000 3.88 5.12 41.29 4.41
2452 2618 0.037303 ATCCATGATCCATCACGGCC 59.963 55.000 0.00 0.00 39.84 6.13
2455 2621 2.614734 CCCTCATCCATGATCCATCACG 60.615 54.545 0.00 0.00 40.03 4.35
2457 2623 1.353358 GCCCTCATCCATGATCCATCA 59.647 52.381 0.00 0.00 41.70 3.07
2510 3743 3.465871 CAACCAAATCAAGGTTTGTGGG 58.534 45.455 5.21 0.00 46.85 4.61
2647 3884 9.429359 GAGAAAGAGACATAGATTTCTGAACAA 57.571 33.333 3.93 0.00 40.97 2.83
2669 3906 5.221224 CCAAAGGTGTGTAAAATGCAGAGAA 60.221 40.000 0.00 0.00 0.00 2.87
2703 3940 9.455847 CTTTTTGTATTGGTTTCTCTTCAAGAG 57.544 33.333 8.27 8.27 43.64 2.85
2718 3955 3.757745 ATCGTCGCCCTTTTTGTATTG 57.242 42.857 0.00 0.00 0.00 1.90
2719 3956 3.875134 CCTATCGTCGCCCTTTTTGTATT 59.125 43.478 0.00 0.00 0.00 1.89
2762 3999 0.175760 TCATCTAACGGCTGTCAGGC 59.824 55.000 16.26 16.26 37.44 4.85
2763 4000 1.804372 GCTCATCTAACGGCTGTCAGG 60.804 57.143 0.00 0.00 0.00 3.86
2764 4001 1.565305 GCTCATCTAACGGCTGTCAG 58.435 55.000 0.00 0.00 0.00 3.51
2765 4002 0.175760 GGCTCATCTAACGGCTGTCA 59.824 55.000 0.00 0.00 0.00 3.58
2766 4003 0.175760 TGGCTCATCTAACGGCTGTC 59.824 55.000 0.00 0.00 0.00 3.51
2767 4004 0.176680 CTGGCTCATCTAACGGCTGT 59.823 55.000 0.00 0.00 0.00 4.40
2768 4005 0.531532 CCTGGCTCATCTAACGGCTG 60.532 60.000 0.00 0.00 0.00 4.85
2769 4006 0.978146 ACCTGGCTCATCTAACGGCT 60.978 55.000 0.00 0.00 0.00 5.52
2770 4007 0.811616 CACCTGGCTCATCTAACGGC 60.812 60.000 0.00 0.00 0.00 5.68
2771 4008 0.824109 TCACCTGGCTCATCTAACGG 59.176 55.000 0.00 0.00 0.00 4.44
2772 4009 2.672961 TTCACCTGGCTCATCTAACG 57.327 50.000 0.00 0.00 0.00 3.18
2773 4010 3.010420 GGTTTCACCTGGCTCATCTAAC 58.990 50.000 0.00 0.00 34.73 2.34
2774 4011 2.642311 TGGTTTCACCTGGCTCATCTAA 59.358 45.455 0.00 0.00 39.58 2.10
2775 4012 2.027192 GTGGTTTCACCTGGCTCATCTA 60.027 50.000 0.00 0.00 39.58 1.98
2776 4013 1.067295 TGGTTTCACCTGGCTCATCT 58.933 50.000 0.00 0.00 39.58 2.90
2777 4014 1.168714 GTGGTTTCACCTGGCTCATC 58.831 55.000 0.00 0.00 39.58 2.92
2778 4015 3.346426 GTGGTTTCACCTGGCTCAT 57.654 52.632 0.00 0.00 39.58 2.90
2779 4016 4.898607 GTGGTTTCACCTGGCTCA 57.101 55.556 0.00 0.00 39.58 4.26
2802 4039 3.591254 AAGACGCGAGGACAAGGGC 62.591 63.158 15.93 0.00 0.00 5.19
2803 4040 1.446272 GAAGACGCGAGGACAAGGG 60.446 63.158 15.93 0.00 0.00 3.95
2804 4041 1.446272 GGAAGACGCGAGGACAAGG 60.446 63.158 15.93 0.00 0.00 3.61
2805 4042 0.456995 GAGGAAGACGCGAGGACAAG 60.457 60.000 15.93 0.00 0.00 3.16
2806 4043 1.585006 GAGGAAGACGCGAGGACAA 59.415 57.895 15.93 0.00 0.00 3.18
2807 4044 2.341101 GGAGGAAGACGCGAGGACA 61.341 63.158 15.93 0.00 0.00 4.02
2808 4045 1.596895 AAGGAGGAAGACGCGAGGAC 61.597 60.000 15.93 0.85 0.00 3.85
2809 4046 1.304217 AAGGAGGAAGACGCGAGGA 60.304 57.895 15.93 0.00 0.00 3.71
2810 4047 1.139947 GAAGGAGGAAGACGCGAGG 59.860 63.158 15.93 0.00 0.00 4.63
2811 4048 1.139947 GGAAGGAGGAAGACGCGAG 59.860 63.158 15.93 0.00 0.00 5.03
2812 4049 0.898789 AAGGAAGGAGGAAGACGCGA 60.899 55.000 15.93 0.00 0.00 5.87
2813 4050 0.458716 GAAGGAAGGAGGAAGACGCG 60.459 60.000 3.53 3.53 0.00 6.01
2814 4051 0.108089 GGAAGGAAGGAGGAAGACGC 60.108 60.000 0.00 0.00 0.00 5.19
2815 4052 1.478916 GAGGAAGGAAGGAGGAAGACG 59.521 57.143 0.00 0.00 0.00 4.18
2816 4053 1.834896 GGAGGAAGGAAGGAGGAAGAC 59.165 57.143 0.00 0.00 0.00 3.01
2817 4054 1.273896 GGGAGGAAGGAAGGAGGAAGA 60.274 57.143 0.00 0.00 0.00 2.87
2818 4055 1.208706 GGGAGGAAGGAAGGAGGAAG 58.791 60.000 0.00 0.00 0.00 3.46
2819 4056 0.253207 GGGGAGGAAGGAAGGAGGAA 60.253 60.000 0.00 0.00 0.00 3.36
2820 4057 1.396594 GGGGAGGAAGGAAGGAGGA 59.603 63.158 0.00 0.00 0.00 3.71
2821 4058 1.694525 GGGGGAGGAAGGAAGGAGG 60.695 68.421 0.00 0.00 0.00 4.30
2822 4059 0.692756 GAGGGGGAGGAAGGAAGGAG 60.693 65.000 0.00 0.00 0.00 3.69
2823 4060 1.396594 GAGGGGGAGGAAGGAAGGA 59.603 63.158 0.00 0.00 0.00 3.36
2824 4061 1.694525 GGAGGGGGAGGAAGGAAGG 60.695 68.421 0.00 0.00 0.00 3.46
2825 4062 1.694525 GGGAGGGGGAGGAAGGAAG 60.695 68.421 0.00 0.00 0.00 3.46
2826 4063 2.459710 GGGAGGGGGAGGAAGGAA 59.540 66.667 0.00 0.00 0.00 3.36
2827 4064 3.707189 GGGGAGGGGGAGGAAGGA 61.707 72.222 0.00 0.00 0.00 3.36
2828 4065 4.845307 GGGGGAGGGGGAGGAAGG 62.845 77.778 0.00 0.00 0.00 3.46
2882 4122 1.673808 GGGAGATGGACGCGGTTACT 61.674 60.000 12.47 2.64 0.00 2.24
2883 4123 1.227176 GGGAGATGGACGCGGTTAC 60.227 63.158 12.47 0.00 0.00 2.50
2884 4124 1.683025 TGGGAGATGGACGCGGTTA 60.683 57.895 12.47 0.00 0.00 2.85
2885 4125 3.000819 TGGGAGATGGACGCGGTT 61.001 61.111 12.47 0.00 0.00 4.44
2886 4126 2.849096 TAGTGGGAGATGGACGCGGT 62.849 60.000 12.47 0.00 0.00 5.68
2888 4128 1.065928 GTAGTGGGAGATGGACGCG 59.934 63.158 3.53 3.53 0.00 6.01
2889 4129 0.103208 CTGTAGTGGGAGATGGACGC 59.897 60.000 0.00 0.00 0.00 5.19
2892 4132 1.043116 CGCCTGTAGTGGGAGATGGA 61.043 60.000 0.00 0.00 0.00 3.41
2893 4133 1.043116 TCGCCTGTAGTGGGAGATGG 61.043 60.000 0.00 0.00 0.00 3.51
2895 4135 1.395826 GCTCGCCTGTAGTGGGAGAT 61.396 60.000 8.31 0.00 32.62 2.75
2896 4136 2.052690 GCTCGCCTGTAGTGGGAGA 61.053 63.158 8.31 0.00 30.84 3.71
2898 4138 1.609501 AAGCTCGCCTGTAGTGGGA 60.610 57.895 0.00 0.00 0.00 4.37
2907 4147 2.404995 GCATGCTTCAAGCTCGCCT 61.405 57.895 11.57 0.00 42.97 5.52
2910 4150 2.402388 CGGCATGCTTCAAGCTCG 59.598 61.111 18.92 5.96 42.97 5.03
2923 4163 2.535485 ATTCAATCTCACCGGCGGCA 62.535 55.000 28.71 12.45 0.00 5.69
2928 4168 2.615447 CCACATGATTCAATCTCACCGG 59.385 50.000 0.00 0.00 0.00 5.28
2932 4172 2.291365 CGGCCACATGATTCAATCTCA 58.709 47.619 2.24 0.00 0.00 3.27
2935 4175 0.031178 GCCGGCCACATGATTCAATC 59.969 55.000 18.11 0.00 0.00 2.67
2938 4178 2.823593 CGCCGGCCACATGATTCA 60.824 61.111 23.46 0.00 0.00 2.57
2948 4188 0.886490 ATGATTTGATCTCGCCGGCC 60.886 55.000 23.46 6.80 0.00 6.13
2972 4212 1.740025 GAAAAGGGATGGAAGTGCGAG 59.260 52.381 0.00 0.00 0.00 5.03
2974 4214 0.447801 CGAAAAGGGATGGAAGTGCG 59.552 55.000 0.00 0.00 0.00 5.34
2975 4215 1.200020 CACGAAAAGGGATGGAAGTGC 59.800 52.381 0.00 0.00 0.00 4.40
2984 4224 2.358247 GGCGAGCACGAAAAGGGA 60.358 61.111 8.01 0.00 42.66 4.20
2988 4228 3.353836 GCCAGGCGAGCACGAAAA 61.354 61.111 8.01 0.00 42.66 2.29
2989 4229 4.314440 AGCCAGGCGAGCACGAAA 62.314 61.111 8.01 0.00 42.66 3.46
2993 4233 4.828925 GGAGAGCCAGGCGAGCAC 62.829 72.222 5.55 0.00 0.00 4.40
3004 4245 2.139118 GAGAACAACAGTGTGGAGAGC 58.861 52.381 4.15 0.00 38.27 4.09
3008 4249 2.115427 TGAGGAGAACAACAGTGTGGA 58.885 47.619 4.15 0.00 38.27 4.02
3009 4250 2.620251 TGAGGAGAACAACAGTGTGG 57.380 50.000 0.00 0.00 38.27 4.17
3014 4255 2.557920 AGGCTTGAGGAGAACAACAG 57.442 50.000 0.00 0.00 0.00 3.16
3017 4258 1.878102 GCGAAGGCTTGAGGAGAACAA 60.878 52.381 3.46 0.00 35.83 2.83
3041 4282 0.179134 TTGTTGTGGGGCGTTTTTCG 60.179 50.000 0.00 0.00 43.12 3.46
3042 4283 1.282817 GTTGTTGTGGGGCGTTTTTC 58.717 50.000 0.00 0.00 0.00 2.29
3049 4292 2.517402 TCACGGTTGTTGTGGGGC 60.517 61.111 0.00 0.00 37.91 5.80
3054 4297 1.593196 CATGGAGTCACGGTTGTTGT 58.407 50.000 0.00 0.00 0.00 3.32
3057 4300 1.302511 GGCATGGAGTCACGGTTGT 60.303 57.895 0.00 0.00 0.00 3.32
3063 4306 2.512515 GAGGCGGCATGGAGTCAC 60.513 66.667 13.08 0.00 0.00 3.67
3066 4309 4.101448 GGTGAGGCGGCATGGAGT 62.101 66.667 13.08 0.00 0.00 3.85
3099 4342 1.671979 CATCGATGATGCAACCAGGT 58.328 50.000 21.02 0.00 33.17 4.00
3103 4346 2.245159 TCTCCATCGATGATGCAACC 57.755 50.000 26.86 0.00 38.59 3.77
3112 4355 4.363999 GAACGACAGAAATCTCCATCGAT 58.636 43.478 12.60 0.00 33.88 3.59
3122 4365 5.576447 AGTTTTGTTGGAACGACAGAAAT 57.424 34.783 0.00 0.00 32.38 2.17
3137 4380 1.886886 ACGACCCGCATTAGTTTTGT 58.113 45.000 0.00 0.00 0.00 2.83
3143 4386 3.588277 ATGCTACGACCCGCATTAG 57.412 52.632 0.00 0.00 43.85 1.73
3194 4438 0.535335 TGGTGAATGGGTAGAGCGTC 59.465 55.000 0.00 0.00 0.00 5.19
3196 4440 1.942657 CATTGGTGAATGGGTAGAGCG 59.057 52.381 0.00 0.00 36.12 5.03
3206 4450 2.307496 TGCTGGAACCATTGGTGAAT 57.693 45.000 9.62 0.00 35.34 2.57
3207 4451 2.079170 TTGCTGGAACCATTGGTGAA 57.921 45.000 9.62 0.00 35.34 3.18
3229 4474 5.493133 TTTTTGCTACAACGACATCTGTT 57.507 34.783 0.00 0.00 0.00 3.16
3274 4519 1.100463 ACAACAAGCGGTGACATGCA 61.100 50.000 0.00 0.00 0.00 3.96
3283 4528 2.031245 TGACAAATGCTACAACAAGCGG 60.031 45.455 0.00 0.00 45.85 5.52
3285 4530 3.848019 CGATGACAAATGCTACAACAAGC 59.152 43.478 0.00 0.00 43.08 4.01
3290 4535 4.700268 AATGCGATGACAAATGCTACAA 57.300 36.364 0.00 0.00 0.00 2.41
3292 4537 4.414852 ACAAATGCGATGACAAATGCTAC 58.585 39.130 0.00 0.00 0.00 3.58
3297 4542 4.858692 GCTACAACAAATGCGATGACAAAT 59.141 37.500 0.00 0.00 0.00 2.32
3300 4545 2.810852 TGCTACAACAAATGCGATGACA 59.189 40.909 0.00 0.00 0.00 3.58
3304 4549 3.668191 CGTTTTGCTACAACAAATGCGAT 59.332 39.130 0.00 0.00 39.18 4.58
3305 4550 3.039405 CGTTTTGCTACAACAAATGCGA 58.961 40.909 0.00 0.00 39.18 5.10
3307 4552 4.101112 CACGTTTTGCTACAACAAATGC 57.899 40.909 0.00 0.00 39.18 3.56
3327 4572 1.391157 AAAAGCTTCAACCAGCGGCA 61.391 50.000 0.00 0.00 45.24 5.69
3328 4573 0.249447 AAAAAGCTTCAACCAGCGGC 60.249 50.000 0.00 0.00 45.24 6.53
3355 4600 1.460273 GCCGGAAAAAGCTGGAACCA 61.460 55.000 5.05 0.00 36.35 3.67
3417 4662 3.508845 ATCCAAAGTGCTACAACCTGT 57.491 42.857 0.00 0.00 0.00 4.00
3434 4679 0.390124 TATGGTACGACCGGCAATCC 59.610 55.000 0.00 0.00 42.58 3.01
3438 4683 2.028839 CCAATATATGGTACGACCGGCA 60.029 50.000 0.00 0.00 44.85 5.69
3439 4684 2.613691 CCAATATATGGTACGACCGGC 58.386 52.381 0.00 0.00 44.85 6.13
3453 4698 1.065053 TGCTACAACCGGCACCAATAT 60.065 47.619 0.00 0.00 33.23 1.28
3455 4700 1.074072 TGCTACAACCGGCACCAAT 59.926 52.632 0.00 0.00 33.23 3.16
3475 4720 2.271940 CTGGAACCAGCGAGTCTCT 58.728 57.895 7.95 0.00 37.24 3.10
3476 4721 4.900154 CTGGAACCAGCGAGTCTC 57.100 61.111 7.95 0.00 37.24 3.36
3484 4729 3.392882 GAACCATTTTTGCTGGAACCAG 58.607 45.455 15.64 15.64 46.15 4.00
3485 4730 2.103941 GGAACCATTTTTGCTGGAACCA 59.896 45.455 0.00 0.00 37.22 3.67
3486 4731 2.368548 AGGAACCATTTTTGCTGGAACC 59.631 45.455 0.00 0.00 37.22 3.62
3487 4732 3.392882 CAGGAACCATTTTTGCTGGAAC 58.607 45.455 0.00 0.00 40.31 3.62
3488 4733 3.749665 CAGGAACCATTTTTGCTGGAA 57.250 42.857 0.00 0.00 40.31 3.53
3491 4736 3.392882 GAACCAGGAACCATTTTTGCTG 58.607 45.455 0.00 0.00 42.82 4.41
3492 4737 2.035832 CGAACCAGGAACCATTTTTGCT 59.964 45.455 0.00 0.00 0.00 3.91
3493 4738 2.403259 CGAACCAGGAACCATTTTTGC 58.597 47.619 0.00 0.00 0.00 3.68
3494 4739 2.223923 TGCGAACCAGGAACCATTTTTG 60.224 45.455 0.00 0.00 0.00 2.44
3495 4740 2.035632 TGCGAACCAGGAACCATTTTT 58.964 42.857 0.00 0.00 0.00 1.94
3496 4741 1.339929 GTGCGAACCAGGAACCATTTT 59.660 47.619 0.00 0.00 0.00 1.82
3497 4742 0.958822 GTGCGAACCAGGAACCATTT 59.041 50.000 0.00 0.00 0.00 2.32
3498 4743 1.234615 CGTGCGAACCAGGAACCATT 61.235 55.000 0.00 0.00 0.00 3.16
3499 4744 1.671054 CGTGCGAACCAGGAACCAT 60.671 57.895 0.00 0.00 0.00 3.55
3500 4745 2.280524 CGTGCGAACCAGGAACCA 60.281 61.111 0.00 0.00 0.00 3.67
3501 4746 2.280592 ACGTGCGAACCAGGAACC 60.281 61.111 0.00 0.00 33.64 3.62
3502 4747 2.654912 CGACGTGCGAACCAGGAAC 61.655 63.158 0.00 0.00 44.57 3.62
3503 4748 2.355363 CGACGTGCGAACCAGGAA 60.355 61.111 0.00 0.00 44.57 3.36
3504 4749 3.598715 ACGACGTGCGAACCAGGA 61.599 61.111 13.06 0.00 44.57 3.86
3505 4750 3.403057 CACGACGTGCGAACCAGG 61.403 66.667 16.06 0.00 44.57 4.45
3506 4751 2.645510 GACACGACGTGCGAACCAG 61.646 63.158 27.11 1.86 44.57 4.00
3507 4752 2.656007 GACACGACGTGCGAACCA 60.656 61.111 27.11 0.00 44.57 3.67
3508 4753 3.400590 GGACACGACGTGCGAACC 61.401 66.667 27.11 19.84 44.57 3.62
3509 4754 3.400590 GGGACACGACGTGCGAAC 61.401 66.667 27.11 15.39 44.57 3.95
3510 4755 4.651008 GGGGACACGACGTGCGAA 62.651 66.667 27.11 0.00 44.57 4.70
3513 4758 4.309950 AAGGGGGACACGACGTGC 62.310 66.667 27.11 18.78 36.98 5.34
3514 4759 1.808531 TACAAGGGGGACACGACGTG 61.809 60.000 25.72 25.72 39.75 4.49
3515 4760 1.530013 CTACAAGGGGGACACGACGT 61.530 60.000 0.00 0.00 0.00 4.34
3516 4761 1.214589 CTACAAGGGGGACACGACG 59.785 63.158 0.00 0.00 0.00 5.12
3517 4762 1.079336 GCTACAAGGGGGACACGAC 60.079 63.158 0.00 0.00 0.00 4.34
3518 4763 0.834687 AAGCTACAAGGGGGACACGA 60.835 55.000 0.00 0.00 0.00 4.35
3519 4764 0.036306 AAAGCTACAAGGGGGACACG 59.964 55.000 0.00 0.00 0.00 4.49
3520 4765 2.287977 AAAAGCTACAAGGGGGACAC 57.712 50.000 0.00 0.00 0.00 3.67
3538 4783 1.596934 TTGCAACGGGTGGCAAAAA 59.403 47.368 11.04 0.00 46.11 1.94
3539 4784 3.298958 TTGCAACGGGTGGCAAAA 58.701 50.000 11.04 0.00 46.11 2.44
3541 4786 2.130426 ATGTTGCAACGGGTGGCAA 61.130 52.632 23.79 9.48 46.84 4.52
3542 4787 2.520500 ATGTTGCAACGGGTGGCA 60.521 55.556 23.79 5.61 38.46 4.92
3543 4788 1.519751 TACATGTTGCAACGGGTGGC 61.520 55.000 26.75 5.31 0.00 5.01
3544 4789 0.239879 GTACATGTTGCAACGGGTGG 59.760 55.000 26.75 16.33 0.00 4.61
3545 4790 0.110419 CGTACATGTTGCAACGGGTG 60.110 55.000 26.75 23.80 0.00 4.61
3546 4791 1.847890 GCGTACATGTTGCAACGGGT 61.848 55.000 23.79 23.73 32.73 5.28
3547 4792 1.154301 GCGTACATGTTGCAACGGG 60.154 57.895 23.79 19.63 32.73 5.28
3548 4793 1.154301 GGCGTACATGTTGCAACGG 60.154 57.895 23.79 19.97 32.73 4.44
3549 4794 1.508954 CGGCGTACATGTTGCAACG 60.509 57.895 23.79 16.98 34.47 4.10
3550 4795 1.795962 GCGGCGTACATGTTGCAAC 60.796 57.895 22.83 22.83 0.00 4.17
3551 4796 2.558821 GCGGCGTACATGTTGCAA 59.441 55.556 20.23 0.00 0.00 4.08
3552 4797 3.427425 GGCGGCGTACATGTTGCA 61.427 61.111 20.23 0.00 0.00 4.08
3553 4798 4.514569 CGGCGGCGTACATGTTGC 62.515 66.667 24.74 9.06 0.00 4.17
3554 4799 3.860125 CCGGCGGCGTACATGTTG 61.860 66.667 30.09 8.16 0.00 3.33
3555 4800 3.887335 AACCGGCGGCGTACATGTT 62.887 57.895 30.09 21.93 0.00 2.71
3556 4801 4.382320 AACCGGCGGCGTACATGT 62.382 61.111 30.09 17.19 0.00 3.21
3557 4802 3.560278 GAACCGGCGGCGTACATG 61.560 66.667 30.09 16.49 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.