AutoCloner

Multiple sequence alignment - TraesCS2B01G386300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G386300	chr2B	100.000	3419	0	0	1	3419	549384111	549387529	0.000000e+00	6314
1	TraesCS2B01G386300	chr2B	90.980	1807	104	32	929	2695	549510130	549508343	0.000000e+00	2379
2	TraesCS2B01G386300	chr2B	93.785	531	26	7	1	526	666199346	666199874	0.000000e+00	791
3	TraesCS2B01G386300	chr2D	90.228	1934	136	32	814	2736	470527851	470525960	0.000000e+00	2475
4	TraesCS2B01G386300	chr2D	93.108	1654	75	17	811	2450	470432029	470433657	0.000000e+00	2386
5	TraesCS2B01G386300	chr2D	94.501	491	23	2	2932	3419	470435154	470435643	0.000000e+00	754
6	TraesCS2B01G386300	chr2D	85.570	298	29	11	2450	2740	470434722	470435012	1.990000e-77	300
7	TraesCS2B01G386300	chr2A	92.810	1655	87	12	814	2459	612274219	612275850	0.000000e+00	2368
8	TraesCS2B01G386300	chr2A	91.515	660	30	10	2523	3174	612275849	612276490	0.000000e+00	885
9	TraesCS2B01G386300	chr2A	95.161	186	6	1	3234	3419	612276500	612276682	1.200000e-74	291
10	TraesCS2B01G386300	chr7B	96.687	815	17	4	1	806	440190446	440191259	0.000000e+00	1347
11	TraesCS2B01G386300	chr7B	93.865	815	20	5	1	806	157136678	157137471	0.000000e+00	1201
12	TraesCS2B01G386300	chrUn	94.118	816	35	5	1	806	23965581	23964769	0.000000e+00	1229
13	TraesCS2B01G386300	chr6B	93.635	817	20	9	1	806	715619047	715619842	0.000000e+00	1192
14	TraesCS2B01G386300	chr6B	90.354	819	25	16	1	806	660662691	660663468	0.000000e+00	1026
15	TraesCS2B01G386300	chr6B	93.974	531	23	8	1	526	692722413	692721887	0.000000e+00	795
16	TraesCS2B01G386300	chr6B	96.855	159	5	0	648	806	688849074	688849232	2.020000e-67	267
17	TraesCS2B01G386300	chr5B	95.055	728	25	5	68	785	667491721	667490995	0.000000e+00	1134
18	TraesCS2B01G386300	chr5B	93.962	530	26	6	1	526	495438423	495438950	0.000000e+00	797
19	TraesCS2B01G386300	chr6D	94.747	533	19	8	1	526	4746525	4745995	0.000000e+00	821
20	TraesCS2B01G386300	chr4D	93.985	532	23	8	1	526	343557799	343557271	0.000000e+00	797
21	TraesCS2B01G386300	chr4A	94.129	528	23	7	3	526	719382633	719382110	0.000000e+00	797
22	TraesCS2B01G386300	chr7A	84.389	442	48	16	377	806	155598530	155598098	6.830000e-112	414
23	TraesCS2B01G386300	chr5D	90.068	292	20	6	523	806	548801297	548801587	1.500000e-98	370

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G386300	chr2B	549384111	549387529	3418	False	6314.000000	6314	100.000000	1	3419	1	chr2B.!!$F1	3418
1	TraesCS2B01G386300	chr2B	549508343	549510130	1787	True	2379.000000	2379	90.980000	929	2695	1	chr2B.!!$R1	1766
2	TraesCS2B01G386300	chr2B	666199346	666199874	528	False	791.000000	791	93.785000	1	526	1	chr2B.!!$F2	525
3	TraesCS2B01G386300	chr2D	470525960	470527851	1891	True	2475.000000	2475	90.228000	814	2736	1	chr2D.!!$R1	1922
4	TraesCS2B01G386300	chr2D	470432029	470435643	3614	False	1146.666667	2386	91.059667	811	3419	3	chr2D.!!$F1	2608
5	TraesCS2B01G386300	chr2A	612274219	612276682	2463	False	1181.333333	2368	93.162000	814	3419	3	chr2A.!!$F1	2605
6	TraesCS2B01G386300	chr7B	440190446	440191259	813	False	1347.000000	1347	96.687000	1	806	1	chr7B.!!$F2	805
7	TraesCS2B01G386300	chr7B	157136678	157137471	793	False	1201.000000	1201	93.865000	1	806	1	chr7B.!!$F1	805
8	TraesCS2B01G386300	chrUn	23964769	23965581	812	True	1229.000000	1229	94.118000	1	806	1	chrUn.!!$R1	805
9	TraesCS2B01G386300	chr6B	715619047	715619842	795	False	1192.000000	1192	93.635000	1	806	1	chr6B.!!$F3	805
10	TraesCS2B01G386300	chr6B	660662691	660663468	777	False	1026.000000	1026	90.354000	1	806	1	chr6B.!!$F1	805
11	TraesCS2B01G386300	chr6B	692721887	692722413	526	True	795.000000	795	93.974000	1	526	1	chr6B.!!$R1	525
12	TraesCS2B01G386300	chr5B	667490995	667491721	726	True	1134.000000	1134	95.055000	68	785	1	chr5B.!!$R1	717
13	TraesCS2B01G386300	chr5B	495438423	495438950	527	False	797.000000	797	93.962000	1	526	1	chr5B.!!$F1	525
14	TraesCS2B01G386300	chr6D	4745995	4746525	530	True	821.000000	821	94.747000	1	526	1	chr6D.!!$R1	525
15	TraesCS2B01G386300	chr4D	343557271	343557799	528	True	797.000000	797	93.985000	1	526	1	chr4D.!!$R1	525
16	TraesCS2B01G386300	chr4A	719382110	719382633	523	True	797.000000	797	94.129000	3	526	1	chr4A.!!$R1	523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
731	779	0.034089	AGAAGAAAGAATGGGCCGGG	60.034	55.0	2.18	0.0	0.0	5.73	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2488	3656	0.041312	CAAACCAAGGTTCGTCGCAG	60.041	55.0	4.73	0.0	37.35	5.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
406	436	7.284919	AGTTCACCCAATTCGAAAATAGTTT	57.715	32.000	0.00	0.00	0.00	2.66
599	639	7.645058	AGAAACAAAAGGATGAAAAGACTCA	57.355	32.000	0.00	0.00	0.00	3.41
625	665	3.688694	AACACGAATACTAAGGTGGCA	57.311	42.857	0.00	0.00	34.78	4.92
731	779	0.034089	AGAAGAAAGAATGGGCCGGG	60.034	55.000	2.18	0.00	0.00	5.73
857	905	2.178521	CGTCCGTTCTCCGTGGAG	59.821	66.667	9.73	9.73	43.21	3.86
866	914	3.966026	CTCCGTGGAGCGTTCGGAC	62.966	68.421	2.38	0.00	46.54	4.79
880	928	3.549574	GTTCGGACGGTTAGATCGTATC	58.450	50.000	0.00	0.00	41.22	2.24
923	971	1.043673	TTTCCCTAGCCCTCGCTCTC	61.044	60.000	0.00	0.00	43.95	3.20
924	972	2.915137	CCCTAGCCCTCGCTCTCC	60.915	72.222	0.00	0.00	43.95	3.71
925	973	2.915137	CCTAGCCCTCGCTCTCCC	60.915	72.222	0.00	0.00	43.95	4.30
926	974	2.915137	CTAGCCCTCGCTCTCCCC	60.915	72.222	0.00	0.00	43.95	4.81
927	975	3.430497	TAGCCCTCGCTCTCCCCT	61.430	66.667	0.00	0.00	43.95	4.79
928	976	3.438615	TAGCCCTCGCTCTCCCCTC	62.439	68.421	0.00	0.00	43.95	4.30
930	978	4.150454	CCCTCGCTCTCCCCTCCT	62.150	72.222	0.00	0.00	0.00	3.69
931	979	2.520741	CCTCGCTCTCCCCTCCTC	60.521	72.222	0.00	0.00	0.00	3.71
932	980	2.520741	CTCGCTCTCCCCTCCTCC	60.521	72.222	0.00	0.00	0.00	4.30
933	981	4.144727	TCGCTCTCCCCTCCTCCC	62.145	72.222	0.00	0.00	0.00	4.30
968	1019	3.703127	GCCGACCCCTCCGTTTCT	61.703	66.667	0.00	0.00	0.00	2.52
972	1023	1.898885	GACCCCTCCGTTTCTCCTC	59.101	63.158	0.00	0.00	0.00	3.71
973	1024	1.612739	ACCCCTCCGTTTCTCCTCC	60.613	63.158	0.00	0.00	0.00	4.30
978	1031	2.224793	CCCTCCGTTTCTCCTCCTTTTT	60.225	50.000	0.00	0.00	0.00	1.94
983	1036	2.488347	CGTTTCTCCTCCTTTTTCCCCA	60.488	50.000	0.00	0.00	0.00	4.96
997	1050	2.751837	CCCAGAAAGCCTTCGCCC	60.752	66.667	0.00	0.00	36.61	6.13
1003	1056	3.273788	AAAGCCTTCGCCCCCAGAG	62.274	63.158	0.00	0.00	34.57	3.35
1052	1105	0.318762	GGTCTCTGCCAGAAGTTCGT	59.681	55.000	0.00	0.00	30.72	3.85
1123	1183	1.462616	CAGGCGGTCCAATTTCATCA	58.537	50.000	0.00	0.00	33.74	3.07
1230	1290	1.229658	CTCCCAGGACCTCCACCTT	60.230	63.158	0.00	0.00	38.89	3.50
1336	1396	4.742649	TCTCGCTGAGGCCGGAGT	62.743	66.667	5.05	0.00	34.44	3.85
1479	1541	6.656270	TGACTGACAATCAATCTGCAAGTAAT	59.344	34.615	0.00	0.00	33.76	1.89
1539	1634	1.993370	GCGAGCACGTGACTAAGAAAT	59.007	47.619	22.23	0.00	41.98	2.17
1661	1756	4.409218	TCGTTTCGAGGCGACCCG	62.409	66.667	8.90	0.00	34.89	5.28
1790	1885	1.700042	GGGTGCCATTCCTCTCCGAT	61.700	60.000	0.00	0.00	0.00	4.18
1826	1921	1.006102	CACCAGCTTCGACGACCTT	60.006	57.895	0.00	0.00	0.00	3.50
1847	1942	0.398318	GCTTCAAGGTCCTCCAGTGT	59.602	55.000	0.00	0.00	35.89	3.55
1991	2086	1.738099	GGACTTCGTCATGCGCTGT	60.738	57.895	9.73	0.00	41.07	4.40
2025	2120	4.640690	AGGTGGTCTCCCCGTGCT	62.641	66.667	0.00	0.00	35.15	4.40
2271	2366	1.222115	CTATAGCCCGTTTGAGCGCC	61.222	60.000	2.29	0.00	0.00	6.53
2272	2367	2.653953	TATAGCCCGTTTGAGCGCCC	62.654	60.000	2.29	0.00	0.00	6.13
2398	2499	4.470304	GGACCCTTCCAGTTGAATAGTAGT	59.530	45.833	0.00	0.00	42.30	2.73
2401	2502	5.309806	ACCCTTCCAGTTGAATAGTAGTTGT	59.690	40.000	0.00	0.00	31.06	3.32
2402	2503	6.183361	ACCCTTCCAGTTGAATAGTAGTTGTT	60.183	38.462	0.00	0.00	31.06	2.83
2403	2504	6.149474	CCCTTCCAGTTGAATAGTAGTTGTTG	59.851	42.308	0.00	0.00	31.06	3.33
2404	2505	6.934645	CCTTCCAGTTGAATAGTAGTTGTTGA	59.065	38.462	0.00	0.00	31.06	3.18
2423	2524	6.157904	TGTTGATGACGGTTTCGATTTACTA	58.842	36.000	0.00	0.00	40.11	1.82
2432	2533	5.004535	CGGTTTCGATTTACTAGAGAGCAAC	59.995	44.000	0.00	0.00	39.00	4.17
2480	3648	4.170256	GTCGTCTCTGTTTCATTCCTCTC	58.830	47.826	0.00	0.00	0.00	3.20
2481	3649	4.082463	GTCGTCTCTGTTTCATTCCTCTCT	60.082	45.833	0.00	0.00	0.00	3.10
2488	3656	6.226787	TCTGTTTCATTCCTCTCTGTTCTTC	58.773	40.000	0.00	0.00	0.00	2.87
2547	3718	5.687285	GCTCAGACAACACTTGTTTTATTGG	59.313	40.000	0.00	0.00	45.52	3.16
2622	3794	5.768164	AGTTTGTAATTCGGTGGTGATTTCT	59.232	36.000	0.00	0.00	0.00	2.52
2676	3849	3.005684	TGCATTTTAGGCACTTTGTGAGG	59.994	43.478	1.52	0.00	41.75	3.86
2785	3981	7.218583	GCTTTGAACATTTTTGGTGAACAATTG	59.781	33.333	3.24	3.24	39.21	2.32
2816	4012	8.528643	GGTAGCATTTTACCTCTGGTTAAATTT	58.471	33.333	9.96	0.00	40.52	1.82
2823	4019	9.771534	TTTTACCTCTGGTTAAATTTTGAATGG	57.228	29.630	0.00	0.00	37.09	3.16
2854	4054	6.574350	ACTCTGTAAATACATCTGCAGGTAC	58.426	40.000	15.13	0.52	35.36	3.34
2942	4142	5.627499	ATGAGAGCAAGAGAGATATCGAC	57.373	43.478	0.00	0.00	0.00	4.20
2947	4147	2.350964	GCAAGAGAGATATCGACGGGAC	60.351	54.545	0.00	0.00	0.00	4.46
3040	4240	2.438434	GGCCCAACGGACAGGATG	60.438	66.667	0.00	0.00	46.00	3.51
3136	4336	1.449601	CTTGTGGTCCGCGGCTATT	60.450	57.895	23.51	0.00	0.00	1.73
3139	4339	1.883084	GTGGTCCGCGGCTATTGAG	60.883	63.158	23.51	0.00	0.00	3.02
3224	4424	1.555075	ACCAGGATAGCAAGCGAGAAA	59.445	47.619	0.00	0.00	0.00	2.52
3319	4522	2.261361	GCAACGGTTTCCATGGCC	59.739	61.111	6.96	1.18	0.00	5.36
3384	4587	1.248785	ACCTTCTGCTGCCATGCAAG	61.249	55.000	0.00	0.00	42.83	4.01
3407	4610	7.084268	AGGAACCCATCAATTATTAGAGAGG	57.916	40.000	0.00	0.00	0.00	3.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
176	181	9.691362	AATGTTCACTGTGTATAAAAATGTTCC	57.309	29.630	7.79	0.00	0.00	3.62
235	243	5.982465	ATTCCAAATTTTTGTTCACCGTG	57.018	34.783	2.63	0.00	36.45	4.94
388	398	9.816354	AATTGGATAAACTATTTTCGAATTGGG	57.184	29.630	0.00	0.00	29.20	4.12
595	635	7.091443	CCTTAGTATTCGTGTTTTCTCTGAGT	58.909	38.462	4.32	0.00	0.00	3.41
599	639	6.164176	CCACCTTAGTATTCGTGTTTTCTCT	58.836	40.000	0.00	0.00	0.00	3.10
625	665	0.176680	CGTTCTGCCATAGCCAGTCT	59.823	55.000	0.00	0.00	38.69	3.24
807	855	8.565416	CGGATTCACATACAATGACTACTAGTA	58.435	37.037	1.89	1.89	0.00	1.82
808	856	7.068348	ACGGATTCACATACAATGACTACTAGT	59.932	37.037	0.00	0.00	0.00	2.57
809	857	7.426410	ACGGATTCACATACAATGACTACTAG	58.574	38.462	0.00	0.00	0.00	2.57
825	873	1.359459	GGACGGCTTGACGGATTCAC	61.359	60.000	0.00	0.00	38.39	3.18
866	914	2.095532	CGCCTAGGATACGATCTAACCG	59.904	54.545	14.75	0.00	46.39	4.44
870	918	2.708051	CACCGCCTAGGATACGATCTA	58.292	52.381	14.75	0.00	45.00	1.98
932	980	2.227194	GCCAGTATTTATGAACGGGGG	58.773	52.381	0.00	0.00	32.31	5.40
933	981	2.227194	GGCCAGTATTTATGAACGGGG	58.773	52.381	0.00	0.00	32.31	5.73
939	987	1.418637	GGGGTCGGCCAGTATTTATGA	59.581	52.381	9.07	0.00	36.17	2.15
965	1016	2.713595	TCTGGGGAAAAAGGAGGAGAA	58.286	47.619	0.00	0.00	0.00	2.87
968	1019	2.490902	GCTTTCTGGGGAAAAAGGAGGA	60.491	50.000	0.00	0.00	40.41	3.71
972	1023	2.015456	AGGCTTTCTGGGGAAAAAGG	57.985	50.000	0.00	0.00	40.41	3.11
973	1024	2.029918	CGAAGGCTTTCTGGGGAAAAAG	60.030	50.000	0.00	0.00	40.41	2.27
978	1031	2.351276	GCGAAGGCTTTCTGGGGA	59.649	61.111	0.00	0.00	35.83	4.81
997	1050	2.348666	CGTCGAGCAAATTAACTCTGGG	59.651	50.000	6.19	0.00	0.00	4.45
1003	1056	4.383679	GAAGTGACGTCGAGCAAATTAAC	58.616	43.478	11.62	0.00	0.00	2.01
1123	1183	2.584608	CACGGAAAGGGGCGAGAT	59.415	61.111	0.00	0.00	0.00	2.75
1374	1435	3.119101	GCTTCTGAAAGTCCACGGATCTA	60.119	47.826	0.00	0.00	34.79	1.98
1510	1599	1.064357	TCACGTGCTCGCGTTATCATA	59.936	47.619	11.67	0.00	43.83	2.15
1539	1634	4.833390	TGATCCATGCAATGCAAAATCAA	58.167	34.783	20.51	9.98	44.97	2.57
1577	1672	1.181741	TGAGAGCGTTCACCTCAGCT	61.182	55.000	1.01	0.00	43.33	4.24
1661	1756	1.140407	CGTTGGCGAGGACGATCTTC	61.140	60.000	0.00	0.00	41.53	2.87
1790	1885	3.845259	GCGTACTGCATCCCGGGA	61.845	66.667	29.18	29.18	45.45	5.14
1826	1921	0.768221	ACTGGAGGACCTTGAAGCCA	60.768	55.000	0.00	0.00	37.04	4.75
1847	1942	0.393808	GCCCCGCCATCTTGTAGAAA	60.394	55.000	0.00	0.00	0.00	2.52
2025	2120	2.091885	AGAACTTGAACTTGGGGAGCAA	60.092	45.455	0.00	0.00	0.00	3.91
2396	2497	2.828877	TCGAAACCGTCATCAACAACT	58.171	42.857	0.00	0.00	0.00	3.16
2398	2499	4.822036	AAATCGAAACCGTCATCAACAA	57.178	36.364	0.00	0.00	0.00	2.83
2401	2502	6.623486	TCTAGTAAATCGAAACCGTCATCAA	58.377	36.000	0.00	0.00	0.00	2.57
2402	2503	6.094464	TCTCTAGTAAATCGAAACCGTCATCA	59.906	38.462	0.00	0.00	0.00	3.07
2403	2504	6.493116	TCTCTAGTAAATCGAAACCGTCATC	58.507	40.000	0.00	0.00	0.00	2.92
2404	2505	6.446781	TCTCTAGTAAATCGAAACCGTCAT	57.553	37.500	0.00	0.00	0.00	3.06
2423	2524	1.893786	CAGCCCTACGTTGCTCTCT	59.106	57.895	0.00	0.00	35.12	3.10
2432	2533	1.665916	CATCCATCGCAGCCCTACG	60.666	63.158	0.00	0.00	0.00	3.51
2488	3656	0.041312	CAAACCAAGGTTCGTCGCAG	60.041	55.000	4.73	0.00	37.35	5.18
2520	3691	2.024176	ACAAGTGTTGTCTGAGCGTT	57.976	45.000	0.00	0.00	40.56	4.84
2592	3764	7.262772	TCACCACCGAATTACAAACTAGATAG	58.737	38.462	0.00	0.00	0.00	2.08
2593	3765	7.172868	TCACCACCGAATTACAAACTAGATA	57.827	36.000	0.00	0.00	0.00	1.98
2622	3794	9.249053	AGAGACATAGATTTCTGAACAGAGTAA	57.751	33.333	4.72	0.00	38.88	2.24
2676	3849	5.810074	GGCTCAGTTTCTCTTCAAGATAGTC	59.190	44.000	0.00	0.00	32.82	2.59
2711	3886	0.951558	CAGGGTTTCCAACTTCGTGG	59.048	55.000	0.00	0.00	40.33	4.94
2712	3887	1.961793	TCAGGGTTTCCAACTTCGTG	58.038	50.000	0.00	0.00	34.83	4.35
2715	3890	7.227049	TGAAAATATCAGGGTTTCCAACTTC	57.773	36.000	0.00	0.00	33.04	3.01
2763	3938	6.402983	GCACAATTGTTCACCAAAAATGTTCA	60.403	34.615	8.77	0.00	36.44	3.18
2766	3941	4.940046	TGCACAATTGTTCACCAAAAATGT	59.060	33.333	8.77	0.00	36.44	2.71
2800	3996	8.485578	AACCATTCAAAATTTAACCAGAGGTA	57.514	30.769	0.00	0.00	33.12	3.08
2823	4019	9.582431	TGCAGATGTATTTACAGAGTAGTAAAC	57.418	33.333	1.84	0.00	44.15	2.01
2854	4054	3.456277	AGCCTAAGTTCAGTTATCTGGGG	59.544	47.826	1.00	0.00	41.59	4.96
2926	4126	1.880675	TCCCGTCGATATCTCTCTTGC	59.119	52.381	0.34	0.00	0.00	4.01
2942	4142	1.001974	TCTGTTCCATGTTCTGTCCCG	59.998	52.381	0.00	0.00	0.00	5.14
2947	4147	3.631686	TGGTGTTTCTGTTCCATGTTCTG	59.368	43.478	0.00	0.00	0.00	3.02
3040	4240	0.102663	GGAAGTTCGGGAGGATCGAC	59.897	60.000	0.00	0.00	36.30	4.20
3052	4252	0.519077	CCAAGAAGCTGCGGAAGTTC	59.481	55.000	0.00	0.00	0.00	3.01
3136	4336	2.723273	TCTGAAGCAGGTATCGACTCA	58.277	47.619	0.00	0.00	31.51	3.41
3139	4339	3.717400	TGATCTGAAGCAGGTATCGAC	57.283	47.619	0.00	0.00	31.51	4.20
3181	4381	2.557869	AGTATTAGTGCCCAAGGTGGA	58.442	47.619	0.00	0.00	40.96	4.02
3224	4424	3.058639	GCTTGCTTCTTCATCTGTTTCGT	60.059	43.478	0.00	0.00	0.00	3.85
3319	4522	0.605589	ACGAGAGGGTGAAGCAGAAG	59.394	55.000	0.00	0.00	0.00	2.85
3384	4587	6.183361	ACCCTCTCTAATAATTGATGGGTTCC	60.183	42.308	0.00	0.00	42.12	3.62

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.