Multiple sequence alignment - TraesCS2B01G385800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G385800 | chr2B | 100.000 | 4507 | 0 | 0 | 1 | 4507 | 549195821 | 549191315 | 0.000000e+00 | 8323.0 |
1 | TraesCS2B01G385800 | chr2B | 100.000 | 36 | 0 | 0 | 2092 | 2127 | 549193697 | 549193662 | 2.910000e-07 | 67.6 |
2 | TraesCS2B01G385800 | chr2B | 100.000 | 36 | 0 | 0 | 2125 | 2160 | 549193730 | 549193695 | 2.910000e-07 | 67.6 |
3 | TraesCS2B01G385800 | chr2D | 91.595 | 1630 | 74 | 36 | 1085 | 2675 | 470227802 | 470226197 | 0.000000e+00 | 2193.0 |
4 | TraesCS2B01G385800 | chr2D | 92.871 | 1052 | 40 | 8 | 3481 | 4507 | 470224943 | 470223902 | 0.000000e+00 | 1495.0 |
5 | TraesCS2B01G385800 | chr2D | 94.527 | 402 | 16 | 4 | 2669 | 3065 | 470226078 | 470225678 | 2.300000e-172 | 616.0 |
6 | TraesCS2B01G385800 | chr2D | 88.840 | 457 | 15 | 8 | 3098 | 3525 | 470225388 | 470224939 | 3.090000e-146 | 529.0 |
7 | TraesCS2B01G385800 | chr2D | 89.070 | 430 | 10 | 11 | 488 | 914 | 470228350 | 470227955 | 2.420000e-137 | 499.0 |
8 | TraesCS2B01G385800 | chr2D | 87.626 | 396 | 37 | 7 | 1 | 393 | 470228746 | 470228360 | 2.470000e-122 | 449.0 |
9 | TraesCS2B01G385800 | chr2A | 93.770 | 947 | 46 | 7 | 1573 | 2511 | 611957012 | 611956071 | 0.000000e+00 | 1410.0 |
10 | TraesCS2B01G385800 | chr2A | 89.796 | 931 | 59 | 22 | 4 | 926 | 611965944 | 611965042 | 0.000000e+00 | 1160.0 |
11 | TraesCS2B01G385800 | chr2A | 96.024 | 503 | 19 | 1 | 2563 | 3065 | 611956075 | 611955574 | 0.000000e+00 | 817.0 |
12 | TraesCS2B01G385800 | chr2A | 83.749 | 843 | 77 | 20 | 3099 | 3892 | 611955277 | 611954446 | 0.000000e+00 | 743.0 |
13 | TraesCS2B01G385800 | chr2A | 91.048 | 458 | 23 | 6 | 1123 | 1577 | 611957483 | 611957041 | 1.790000e-168 | 603.0 |
14 | TraesCS2B01G385800 | chr2A | 92.798 | 361 | 18 | 4 | 3906 | 4266 | 611954334 | 611953982 | 2.400000e-142 | 516.0 |
15 | TraesCS2B01G385800 | chr2A | 94.886 | 176 | 9 | 0 | 4217 | 4392 | 611953965 | 611953790 | 4.440000e-70 | 276.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G385800 | chr2B | 549191315 | 549195821 | 4506 | True | 2819.4 | 8323 | 100.000000 | 1 | 4507 | 3 | chr2B.!!$R1 | 4506 |
1 | TraesCS2B01G385800 | chr2D | 470223902 | 470228746 | 4844 | True | 963.5 | 2193 | 90.754833 | 1 | 4507 | 6 | chr2D.!!$R1 | 4506 |
2 | TraesCS2B01G385800 | chr2A | 611965042 | 611965944 | 902 | True | 1160.0 | 1160 | 89.796000 | 4 | 926 | 1 | chr2A.!!$R1 | 922 |
3 | TraesCS2B01G385800 | chr2A | 611953790 | 611957483 | 3693 | True | 727.5 | 1410 | 92.045833 | 1123 | 4392 | 6 | chr2A.!!$R2 | 3269 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
993 | 1006 | 0.031178 | GTGTTTGCTGGTTCAGGCTG | 59.969 | 55.0 | 8.58 | 8.58 | 31.21 | 4.85 | F |
1067 | 1087 | 0.093705 | GCTTGTTTGAGTAGAGCGCG | 59.906 | 55.0 | 0.00 | 0.00 | 0.00 | 6.86 | F |
1551 | 1618 | 1.176619 | CCCCGTTTTCCAGTGGAACC | 61.177 | 60.0 | 24.52 | 16.07 | 41.87 | 3.62 | F |
1751 | 1852 | 1.412079 | AGGTTTTGCTGCACAATGGA | 58.588 | 45.0 | 0.00 | 0.00 | 38.31 | 3.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2877 | 3114 | 1.604278 | GCGATGTATCCTTTTCCAGCC | 59.396 | 52.381 | 0.00 | 0.0 | 0.00 | 4.85 | R |
3066 | 3306 | 7.181125 | ACTCTCAGTAATTCTTAAGATGGTGGT | 59.819 | 37.037 | 5.89 | 0.0 | 0.00 | 4.16 | R |
3353 | 3888 | 1.051812 | CTGGCAGGTCCCTATCGAAT | 58.948 | 55.000 | 6.61 | 0.0 | 0.00 | 3.34 | R |
3737 | 4326 | 0.179018 | GAACAGCAACAGTGGTCCCT | 60.179 | 55.000 | 0.00 | 0.0 | 31.53 | 4.20 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 2.120940 | TCACCCAAGGTCGGCCTA | 59.879 | 61.111 | 10.18 | 0.00 | 46.33 | 3.93 |
18 | 19 | 1.306654 | TCACCCAAGGTCGGCCTAT | 60.307 | 57.895 | 10.18 | 0.00 | 46.33 | 2.57 |
26 | 27 | 3.244422 | CCAAGGTCGGCCTATATTGCTTA | 60.244 | 47.826 | 10.18 | 0.00 | 46.33 | 3.09 |
27 | 28 | 3.679824 | AGGTCGGCCTATATTGCTTAC | 57.320 | 47.619 | 6.89 | 0.00 | 44.90 | 2.34 |
34 | 35 | 3.746492 | GGCCTATATTGCTTACTGGAACG | 59.254 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
37 | 38 | 5.357257 | CCTATATTGCTTACTGGAACGTGT | 58.643 | 41.667 | 0.00 | 0.00 | 0.00 | 4.49 |
45 | 46 | 4.539870 | CTTACTGGAACGTGTCGTCTTTA | 58.460 | 43.478 | 0.00 | 0.00 | 39.99 | 1.85 |
62 | 63 | 3.944650 | TCTTTAGTGCAGTTGACAGCAAA | 59.055 | 39.130 | 0.00 | 0.00 | 40.04 | 3.68 |
63 | 64 | 3.969117 | TTAGTGCAGTTGACAGCAAAG | 57.031 | 42.857 | 0.00 | 0.00 | 40.04 | 2.77 |
70 | 72 | 4.037690 | GCAGTTGACAGCAAAGTGTTAAG | 58.962 | 43.478 | 0.00 | 0.00 | 35.42 | 1.85 |
72 | 74 | 5.266242 | CAGTTGACAGCAAAGTGTTAAGAC | 58.734 | 41.667 | 0.00 | 0.00 | 35.42 | 3.01 |
84 | 86 | 4.381411 | AGTGTTAAGACCTGAGCTGAAAC | 58.619 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
87 | 89 | 0.759346 | AAGACCTGAGCTGAAACGGT | 59.241 | 50.000 | 0.00 | 0.00 | 0.00 | 4.83 |
89 | 91 | 1.149148 | GACCTGAGCTGAAACGGTTC | 58.851 | 55.000 | 6.16 | 6.16 | 0.00 | 3.62 |
90 | 92 | 0.600255 | ACCTGAGCTGAAACGGTTCG | 60.600 | 55.000 | 8.98 | 4.72 | 36.46 | 3.95 |
93 | 95 | 1.204312 | GAGCTGAAACGGTTCGTGC | 59.796 | 57.895 | 19.15 | 19.15 | 39.99 | 5.34 |
95 | 97 | 0.032952 | AGCTGAAACGGTTCGTGCTA | 59.967 | 50.000 | 25.27 | 1.18 | 41.39 | 3.49 |
337 | 339 | 4.448210 | GTGAACTGGGTAAGTGTTCTTGA | 58.552 | 43.478 | 0.00 | 0.00 | 39.81 | 3.02 |
339 | 341 | 3.487120 | ACTGGGTAAGTGTTCTTGACC | 57.513 | 47.619 | 0.00 | 0.00 | 37.88 | 4.02 |
348 | 350 | 6.072673 | GGTAAGTGTTCTTGACCGAATCAAAT | 60.073 | 38.462 | 4.03 | 0.00 | 46.80 | 2.32 |
362 | 364 | 6.316390 | ACCGAATCAAATGAACTCAGGATTAC | 59.684 | 38.462 | 0.00 | 0.00 | 30.49 | 1.89 |
387 | 390 | 4.157289 | AGCAGCATGAAAAATCTACCACAG | 59.843 | 41.667 | 0.00 | 0.00 | 39.69 | 3.66 |
394 | 397 | 8.462016 | GCATGAAAAATCTACCACAGAACTATT | 58.538 | 33.333 | 0.00 | 0.00 | 36.67 | 1.73 |
445 | 448 | 2.773993 | TGTCCCCGACAAGTATTTCC | 57.226 | 50.000 | 0.00 | 0.00 | 39.78 | 3.13 |
447 | 450 | 0.538118 | TCCCCGACAAGTATTTCCGG | 59.462 | 55.000 | 0.00 | 0.00 | 39.85 | 5.14 |
449 | 452 | 1.140252 | CCCCGACAAGTATTTCCGGAT | 59.860 | 52.381 | 4.15 | 0.00 | 42.49 | 4.18 |
451 | 454 | 2.210116 | CCGACAAGTATTTCCGGATGG | 58.790 | 52.381 | 4.15 | 0.00 | 42.49 | 3.51 |
460 | 464 | 2.123597 | TCCGGATGGAGGGGTACG | 60.124 | 66.667 | 0.00 | 0.00 | 40.17 | 3.67 |
461 | 465 | 2.443390 | CCGGATGGAGGGGTACGT | 60.443 | 66.667 | 0.00 | 0.00 | 37.49 | 3.57 |
487 | 491 | 6.896883 | TGATTCTTGAGAATGATGGATGAGT | 58.103 | 36.000 | 10.77 | 0.00 | 44.14 | 3.41 |
488 | 492 | 6.766467 | TGATTCTTGAGAATGATGGATGAGTG | 59.234 | 38.462 | 10.77 | 0.00 | 44.14 | 3.51 |
489 | 493 | 5.688814 | TCTTGAGAATGATGGATGAGTGT | 57.311 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
490 | 494 | 5.425630 | TCTTGAGAATGATGGATGAGTGTG | 58.574 | 41.667 | 0.00 | 0.00 | 0.00 | 3.82 |
491 | 495 | 4.831674 | TGAGAATGATGGATGAGTGTGT | 57.168 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
492 | 496 | 4.510571 | TGAGAATGATGGATGAGTGTGTG | 58.489 | 43.478 | 0.00 | 0.00 | 0.00 | 3.82 |
729 | 737 | 0.409876 | AGGCGGCCATCTCCTAGATA | 59.590 | 55.000 | 23.09 | 0.00 | 32.12 | 1.98 |
730 | 738 | 0.820871 | GGCGGCCATCTCCTAGATAG | 59.179 | 60.000 | 15.62 | 0.00 | 32.12 | 2.08 |
731 | 739 | 1.617263 | GGCGGCCATCTCCTAGATAGA | 60.617 | 57.143 | 15.62 | 0.00 | 32.12 | 1.98 |
732 | 740 | 2.383855 | GCGGCCATCTCCTAGATAGAT | 58.616 | 52.381 | 2.24 | 0.00 | 32.12 | 1.98 |
733 | 741 | 2.100584 | GCGGCCATCTCCTAGATAGATG | 59.899 | 54.545 | 20.14 | 20.14 | 46.55 | 2.90 |
734 | 742 | 2.100584 | CGGCCATCTCCTAGATAGATGC | 59.899 | 54.545 | 21.05 | 17.31 | 45.94 | 3.91 |
735 | 743 | 2.433970 | GGCCATCTCCTAGATAGATGCC | 59.566 | 54.545 | 21.05 | 20.39 | 45.94 | 4.40 |
736 | 744 | 3.373830 | GCCATCTCCTAGATAGATGCCT | 58.626 | 50.000 | 21.05 | 0.00 | 45.94 | 4.75 |
755 | 763 | 2.715864 | TTTTGCTTCGCTGCTGTCGC | 62.716 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
762 | 770 | 4.271170 | GCTGCTGTCGCGCGTATG | 62.271 | 66.667 | 30.98 | 20.24 | 39.65 | 2.39 |
763 | 771 | 3.620428 | CTGCTGTCGCGCGTATGG | 61.620 | 66.667 | 30.98 | 18.38 | 39.65 | 2.74 |
764 | 772 | 4.429212 | TGCTGTCGCGCGTATGGT | 62.429 | 61.111 | 30.98 | 0.00 | 39.65 | 3.55 |
765 | 773 | 3.913573 | GCTGTCGCGCGTATGGTG | 61.914 | 66.667 | 30.98 | 15.36 | 0.00 | 4.17 |
766 | 774 | 2.506217 | CTGTCGCGCGTATGGTGT | 60.506 | 61.111 | 30.98 | 0.00 | 0.00 | 4.16 |
767 | 775 | 2.788176 | CTGTCGCGCGTATGGTGTG | 61.788 | 63.158 | 30.98 | 8.60 | 37.99 | 3.82 |
768 | 776 | 2.807895 | GTCGCGCGTATGGTGTGT | 60.808 | 61.111 | 30.98 | 0.00 | 37.86 | 3.72 |
769 | 777 | 2.807470 | TCGCGCGTATGGTGTGTG | 60.807 | 61.111 | 30.98 | 0.00 | 37.86 | 3.82 |
770 | 778 | 3.109547 | CGCGCGTATGGTGTGTGT | 61.110 | 61.111 | 24.19 | 0.00 | 32.04 | 3.72 |
771 | 779 | 2.474266 | GCGCGTATGGTGTGTGTG | 59.526 | 61.111 | 8.43 | 0.00 | 0.00 | 3.82 |
772 | 780 | 2.314647 | GCGCGTATGGTGTGTGTGT | 61.315 | 57.895 | 8.43 | 0.00 | 0.00 | 3.72 |
773 | 781 | 1.491127 | CGCGTATGGTGTGTGTGTG | 59.509 | 57.895 | 0.00 | 0.00 | 0.00 | 3.82 |
774 | 782 | 1.218875 | CGCGTATGGTGTGTGTGTGT | 61.219 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
775 | 783 | 0.234625 | GCGTATGGTGTGTGTGTGTG | 59.765 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
838 | 849 | 8.463607 | TCGTGTGTTCATAACTTCATATAGACA | 58.536 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
870 | 882 | 7.384660 | TGCACAGTGATTAATTTGCCTAAAAAG | 59.615 | 33.333 | 4.15 | 0.00 | 0.00 | 2.27 |
884 | 897 | 6.883744 | TGCCTAAAAAGAAGATTGGTTTTGT | 58.116 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
907 | 920 | 2.668457 | CCATGTCTACAAGAACAGCGTC | 59.332 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
921 | 934 | 1.999051 | GCGTCAGCATTGTCGGTAG | 59.001 | 57.895 | 0.00 | 0.00 | 44.35 | 3.18 |
922 | 935 | 1.999051 | CGTCAGCATTGTCGGTAGC | 59.001 | 57.895 | 0.00 | 0.00 | 33.23 | 3.58 |
923 | 936 | 0.735978 | CGTCAGCATTGTCGGTAGCA | 60.736 | 55.000 | 0.00 | 0.00 | 33.23 | 3.49 |
926 | 939 | 1.822371 | TCAGCATTGTCGGTAGCAGTA | 59.178 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
927 | 940 | 2.430694 | TCAGCATTGTCGGTAGCAGTAT | 59.569 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
928 | 941 | 3.634910 | TCAGCATTGTCGGTAGCAGTATA | 59.365 | 43.478 | 0.00 | 0.00 | 0.00 | 1.47 |
929 | 942 | 3.736252 | CAGCATTGTCGGTAGCAGTATAC | 59.264 | 47.826 | 0.00 | 0.00 | 0.00 | 1.47 |
930 | 943 | 2.724690 | GCATTGTCGGTAGCAGTATACG | 59.275 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
931 | 944 | 3.549423 | GCATTGTCGGTAGCAGTATACGA | 60.549 | 47.826 | 0.00 | 0.00 | 0.00 | 3.43 |
932 | 945 | 4.795268 | CATTGTCGGTAGCAGTATACGAT | 58.205 | 43.478 | 0.00 | 0.00 | 35.90 | 3.73 |
933 | 946 | 4.478843 | TTGTCGGTAGCAGTATACGATC | 57.521 | 45.455 | 0.00 | 0.00 | 35.90 | 3.69 |
934 | 947 | 2.477754 | TGTCGGTAGCAGTATACGATCG | 59.522 | 50.000 | 14.88 | 14.88 | 35.90 | 3.69 |
935 | 948 | 2.478134 | GTCGGTAGCAGTATACGATCGT | 59.522 | 50.000 | 25.94 | 25.94 | 35.90 | 3.73 |
936 | 949 | 2.477754 | TCGGTAGCAGTATACGATCGTG | 59.522 | 50.000 | 30.23 | 14.33 | 0.00 | 4.35 |
937 | 950 | 2.222678 | CGGTAGCAGTATACGATCGTGT | 59.777 | 50.000 | 30.23 | 25.67 | 0.00 | 4.49 |
938 | 951 | 3.429881 | CGGTAGCAGTATACGATCGTGTA | 59.570 | 47.826 | 30.23 | 24.53 | 0.00 | 2.90 |
939 | 952 | 4.665142 | CGGTAGCAGTATACGATCGTGTAC | 60.665 | 50.000 | 34.53 | 34.53 | 41.15 | 2.90 |
940 | 953 | 3.516681 | AGCAGTATACGATCGTGTACG | 57.483 | 47.619 | 34.53 | 30.07 | 44.05 | 3.67 |
941 | 954 | 2.868583 | AGCAGTATACGATCGTGTACGT | 59.131 | 45.455 | 34.53 | 25.31 | 44.05 | 3.57 |
942 | 955 | 3.310774 | AGCAGTATACGATCGTGTACGTT | 59.689 | 43.478 | 34.53 | 26.92 | 44.05 | 3.99 |
943 | 956 | 4.031028 | GCAGTATACGATCGTGTACGTTT | 58.969 | 43.478 | 34.53 | 22.57 | 44.05 | 3.60 |
944 | 957 | 4.496895 | GCAGTATACGATCGTGTACGTTTT | 59.503 | 41.667 | 34.53 | 22.29 | 44.05 | 2.43 |
945 | 958 | 5.551370 | GCAGTATACGATCGTGTACGTTTTG | 60.551 | 44.000 | 34.53 | 29.39 | 44.05 | 2.44 |
946 | 959 | 5.734035 | CAGTATACGATCGTGTACGTTTTGA | 59.266 | 40.000 | 34.53 | 14.31 | 44.05 | 2.69 |
947 | 960 | 5.961843 | AGTATACGATCGTGTACGTTTTGAG | 59.038 | 40.000 | 34.53 | 1.87 | 44.05 | 3.02 |
948 | 961 | 3.272439 | ACGATCGTGTACGTTTTGAGA | 57.728 | 42.857 | 22.06 | 0.00 | 39.75 | 3.27 |
949 | 962 | 3.631144 | ACGATCGTGTACGTTTTGAGAA | 58.369 | 40.909 | 22.06 | 0.00 | 39.75 | 2.87 |
950 | 963 | 3.667261 | ACGATCGTGTACGTTTTGAGAAG | 59.333 | 43.478 | 22.06 | 0.00 | 39.75 | 2.85 |
951 | 964 | 3.910170 | CGATCGTGTACGTTTTGAGAAGA | 59.090 | 43.478 | 7.03 | 0.00 | 40.80 | 2.87 |
952 | 965 | 4.201372 | CGATCGTGTACGTTTTGAGAAGAC | 60.201 | 45.833 | 7.03 | 0.00 | 40.80 | 3.01 |
953 | 966 | 3.038017 | TCGTGTACGTTTTGAGAAGACG | 58.962 | 45.455 | 0.00 | 0.00 | 42.13 | 4.18 |
954 | 967 | 2.408110 | CGTGTACGTTTTGAGAAGACGC | 60.408 | 50.000 | 0.00 | 0.00 | 40.22 | 5.19 |
955 | 968 | 1.782569 | TGTACGTTTTGAGAAGACGCG | 59.217 | 47.619 | 3.53 | 3.53 | 40.22 | 6.01 |
956 | 969 | 1.783140 | GTACGTTTTGAGAAGACGCGT | 59.217 | 47.619 | 13.85 | 13.85 | 40.22 | 6.01 |
957 | 970 | 2.124011 | ACGTTTTGAGAAGACGCGTA | 57.876 | 45.000 | 13.97 | 0.00 | 40.22 | 4.42 |
958 | 971 | 2.049228 | ACGTTTTGAGAAGACGCGTAG | 58.951 | 47.619 | 13.97 | 0.00 | 40.22 | 3.51 |
959 | 972 | 1.385743 | CGTTTTGAGAAGACGCGTAGG | 59.614 | 52.381 | 13.97 | 0.00 | 0.00 | 3.18 |
960 | 973 | 2.401351 | GTTTTGAGAAGACGCGTAGGT | 58.599 | 47.619 | 13.97 | 0.00 | 0.00 | 3.08 |
961 | 974 | 2.060326 | TTTGAGAAGACGCGTAGGTG | 57.940 | 50.000 | 13.97 | 0.00 | 0.00 | 4.00 |
962 | 975 | 0.956633 | TTGAGAAGACGCGTAGGTGT | 59.043 | 50.000 | 13.97 | 0.37 | 40.22 | 4.16 |
963 | 976 | 1.812235 | TGAGAAGACGCGTAGGTGTA | 58.188 | 50.000 | 13.97 | 0.00 | 36.92 | 2.90 |
964 | 977 | 2.153645 | TGAGAAGACGCGTAGGTGTAA | 58.846 | 47.619 | 13.97 | 0.00 | 36.92 | 2.41 |
965 | 978 | 2.161012 | TGAGAAGACGCGTAGGTGTAAG | 59.839 | 50.000 | 13.97 | 0.00 | 36.92 | 2.34 |
966 | 979 | 2.157738 | AGAAGACGCGTAGGTGTAAGT | 58.842 | 47.619 | 13.97 | 0.00 | 36.92 | 2.24 |
967 | 980 | 2.095364 | AGAAGACGCGTAGGTGTAAGTG | 60.095 | 50.000 | 13.97 | 0.00 | 36.92 | 3.16 |
968 | 981 | 1.242076 | AGACGCGTAGGTGTAAGTGT | 58.758 | 50.000 | 13.97 | 0.00 | 36.92 | 3.55 |
969 | 982 | 1.068748 | AGACGCGTAGGTGTAAGTGTG | 60.069 | 52.381 | 13.97 | 0.00 | 36.92 | 3.82 |
970 | 983 | 0.665369 | ACGCGTAGGTGTAAGTGTGC | 60.665 | 55.000 | 11.67 | 0.00 | 34.49 | 4.57 |
971 | 984 | 1.670971 | CGCGTAGGTGTAAGTGTGCG | 61.671 | 60.000 | 0.00 | 0.00 | 38.28 | 5.34 |
972 | 985 | 1.952266 | GCGTAGGTGTAAGTGTGCGC | 61.952 | 60.000 | 0.00 | 0.00 | 36.97 | 6.09 |
973 | 986 | 1.349259 | CGTAGGTGTAAGTGTGCGCC | 61.349 | 60.000 | 4.18 | 0.00 | 40.12 | 6.53 |
974 | 987 | 1.080366 | TAGGTGTAAGTGTGCGCCG | 60.080 | 57.895 | 4.18 | 0.00 | 44.16 | 6.46 |
975 | 988 | 1.808531 | TAGGTGTAAGTGTGCGCCGT | 61.809 | 55.000 | 4.18 | 0.00 | 44.16 | 5.68 |
978 | 991 | 1.521906 | TGTAAGTGTGCGCCGTGTT | 60.522 | 52.632 | 4.18 | 0.00 | 0.00 | 3.32 |
993 | 1006 | 0.031178 | GTGTTTGCTGGTTCAGGCTG | 59.969 | 55.000 | 8.58 | 8.58 | 31.21 | 4.85 |
1009 | 1024 | 1.336240 | GGCTGGTTTTGATGTGCTCAC | 60.336 | 52.381 | 0.00 | 0.00 | 32.17 | 3.51 |
1035 | 1050 | 2.549064 | AAAAGTTTGAGGGCCATTGC | 57.451 | 45.000 | 6.18 | 0.00 | 0.00 | 3.56 |
1036 | 1051 | 1.422531 | AAAGTTTGAGGGCCATTGCA | 58.577 | 45.000 | 6.18 | 0.00 | 40.13 | 4.08 |
1037 | 1052 | 0.681175 | AAGTTTGAGGGCCATTGCAC | 59.319 | 50.000 | 6.18 | 0.00 | 43.06 | 4.57 |
1042 | 1057 | 2.228545 | TGAGGGCCATTGCACAATTA | 57.771 | 45.000 | 6.18 | 0.00 | 46.13 | 1.40 |
1064 | 1079 | 4.068599 | AGAAAGGCTTGTTTGAGTAGAGC | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 4.09 |
1067 | 1087 | 0.093705 | GCTTGTTTGAGTAGAGCGCG | 59.906 | 55.000 | 0.00 | 0.00 | 0.00 | 6.86 |
1079 | 1099 | 3.432051 | GAGCGCGTACAGCCCATCT | 62.432 | 63.158 | 8.43 | 0.00 | 44.76 | 2.90 |
1081 | 1101 | 1.661821 | GCGCGTACAGCCCATCTAG | 60.662 | 63.158 | 8.43 | 0.00 | 44.76 | 2.43 |
1091 | 1111 | 7.148623 | GCGTACAGCCCATCTAGATAATAAAAC | 60.149 | 40.741 | 4.54 | 0.00 | 40.81 | 2.43 |
1107 | 1141 | 3.473113 | AAAACCAGGCCCATATCAACT | 57.527 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
1111 | 1145 | 2.301346 | CCAGGCCCATATCAACTCAAC | 58.699 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
1118 | 1152 | 5.351458 | GCCCATATCAACTCAACAAAATCC | 58.649 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
1119 | 1153 | 5.682212 | GCCCATATCAACTCAACAAAATCCC | 60.682 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1120 | 1154 | 5.163416 | CCCATATCAACTCAACAAAATCCCC | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 4.81 |
1121 | 1155 | 5.658190 | CCATATCAACTCAACAAAATCCCCT | 59.342 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1159 | 1223 | 3.499918 | AGAAACTCGAGGCAATTTCACAG | 59.500 | 43.478 | 21.42 | 0.00 | 34.22 | 3.66 |
1162 | 1226 | 2.808543 | ACTCGAGGCAATTTCACAGTTC | 59.191 | 45.455 | 18.41 | 0.00 | 0.00 | 3.01 |
1164 | 1228 | 2.154462 | CGAGGCAATTTCACAGTTCCT | 58.846 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
1221 | 1285 | 4.554036 | GCCATGGCGGGAGAGGAC | 62.554 | 72.222 | 23.48 | 0.00 | 34.06 | 3.85 |
1536 | 1603 | 1.228613 | TAACCAAAAGGTGCCCCCG | 60.229 | 57.895 | 0.00 | 0.00 | 38.74 | 5.73 |
1543 | 1610 | 2.591193 | AAAGGTGCCCCCGTTTTCCA | 62.591 | 55.000 | 0.00 | 0.00 | 38.74 | 3.53 |
1551 | 1618 | 1.176619 | CCCCGTTTTCCAGTGGAACC | 61.177 | 60.000 | 24.52 | 16.07 | 41.87 | 3.62 |
1647 | 1747 | 5.329399 | TCAGTTGTAATGCCATTAGGGTTT | 58.671 | 37.500 | 0.00 | 0.00 | 39.65 | 3.27 |
1672 | 1772 | 2.961062 | GGCTTGTTCATGGCATCCTTAT | 59.039 | 45.455 | 0.00 | 0.00 | 0.00 | 1.73 |
1673 | 1773 | 4.144297 | GGCTTGTTCATGGCATCCTTATA | 58.856 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
1676 | 1776 | 5.067674 | GCTTGTTCATGGCATCCTTATACAA | 59.932 | 40.000 | 0.00 | 1.76 | 0.00 | 2.41 |
1700 | 1800 | 9.400638 | CAAGTTAAATTGCTAAATCACGGTTTA | 57.599 | 29.630 | 2.29 | 0.00 | 0.00 | 2.01 |
1726 | 1827 | 5.065731 | AGCAATATCTAAGCAGAACACAAGC | 59.934 | 40.000 | 0.00 | 0.00 | 33.50 | 4.01 |
1729 | 1830 | 7.201644 | GCAATATCTAAGCAGAACACAAGCTTA | 60.202 | 37.037 | 0.00 | 0.00 | 45.91 | 3.09 |
1734 | 1835 | 5.886960 | AAGCAGAACACAAGCTTAATAGG | 57.113 | 39.130 | 0.00 | 0.00 | 45.91 | 2.57 |
1739 | 1840 | 6.363357 | GCAGAACACAAGCTTAATAGGTTTTG | 59.637 | 38.462 | 0.00 | 6.38 | 42.41 | 2.44 |
1746 | 1847 | 3.826157 | AGCTTAATAGGTTTTGCTGCACA | 59.174 | 39.130 | 0.00 | 0.00 | 0.00 | 4.57 |
1751 | 1852 | 1.412079 | AGGTTTTGCTGCACAATGGA | 58.588 | 45.000 | 0.00 | 0.00 | 38.31 | 3.41 |
1762 | 1863 | 3.952323 | CTGCACAATGGATTGGAGATCTT | 59.048 | 43.478 | 0.00 | 0.00 | 41.96 | 2.40 |
2028 | 2137 | 5.252969 | TGTGATCCTTGAATGCTTATTGC | 57.747 | 39.130 | 0.00 | 0.00 | 43.25 | 3.56 |
2060 | 2171 | 7.452501 | TGATCCTTTTTCCACTCATGATTCTTT | 59.547 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2476 | 2587 | 3.576550 | TGGCATTTAAAACCTGAGTTCCC | 59.423 | 43.478 | 10.89 | 0.00 | 34.19 | 3.97 |
2493 | 2604 | 7.016296 | TGAGTTCCCCTAGAAAATGGATTTTT | 58.984 | 34.615 | 0.00 | 0.00 | 39.86 | 1.94 |
2784 | 3020 | 4.816786 | AGCACAAAATTTTGATTGGCAC | 57.183 | 36.364 | 32.20 | 14.92 | 40.55 | 5.01 |
2877 | 3114 | 6.092955 | TGGTTACTACTTTGGTGTACAGAG | 57.907 | 41.667 | 0.00 | 0.00 | 37.33 | 3.35 |
3024 | 3261 | 6.782494 | AGGTTTGTCCTTTGTTCTTGGATAAT | 59.218 | 34.615 | 0.00 | 0.00 | 45.67 | 1.28 |
3025 | 3262 | 7.290014 | AGGTTTGTCCTTTGTTCTTGGATAATT | 59.710 | 33.333 | 0.00 | 0.00 | 45.67 | 1.40 |
3026 | 3263 | 7.931407 | GGTTTGTCCTTTGTTCTTGGATAATTT | 59.069 | 33.333 | 0.00 | 0.00 | 32.51 | 1.82 |
3028 | 3265 | 9.898152 | TTTGTCCTTTGTTCTTGGATAATTTTT | 57.102 | 25.926 | 0.00 | 0.00 | 32.51 | 1.94 |
3069 | 3309 | 8.523915 | AAATGATGCATTACTTAGAATGACCA | 57.476 | 30.769 | 0.00 | 0.00 | 38.83 | 4.02 |
3070 | 3310 | 6.925610 | TGATGCATTACTTAGAATGACCAC | 57.074 | 37.500 | 0.00 | 0.00 | 38.83 | 4.16 |
3071 | 3311 | 5.822519 | TGATGCATTACTTAGAATGACCACC | 59.177 | 40.000 | 0.00 | 0.00 | 38.83 | 4.61 |
3072 | 3312 | 5.172687 | TGCATTACTTAGAATGACCACCA | 57.827 | 39.130 | 0.40 | 0.00 | 38.83 | 4.17 |
3073 | 3313 | 5.754782 | TGCATTACTTAGAATGACCACCAT | 58.245 | 37.500 | 0.40 | 0.00 | 38.83 | 3.55 |
3074 | 3314 | 5.822519 | TGCATTACTTAGAATGACCACCATC | 59.177 | 40.000 | 0.40 | 0.00 | 38.83 | 3.51 |
3075 | 3315 | 6.058183 | GCATTACTTAGAATGACCACCATCT | 58.942 | 40.000 | 0.40 | 0.00 | 38.83 | 2.90 |
3076 | 3316 | 6.543831 | GCATTACTTAGAATGACCACCATCTT | 59.456 | 38.462 | 0.40 | 0.00 | 38.83 | 2.40 |
3077 | 3317 | 7.715249 | GCATTACTTAGAATGACCACCATCTTA | 59.285 | 37.037 | 0.40 | 0.00 | 38.83 | 2.10 |
3078 | 3318 | 9.613428 | CATTACTTAGAATGACCACCATCTTAA | 57.387 | 33.333 | 0.00 | 0.00 | 38.83 | 1.85 |
3079 | 3319 | 9.838339 | ATTACTTAGAATGACCACCATCTTAAG | 57.162 | 33.333 | 0.00 | 0.00 | 37.25 | 1.85 |
3080 | 3320 | 7.496346 | ACTTAGAATGACCACCATCTTAAGA | 57.504 | 36.000 | 7.82 | 7.82 | 36.10 | 2.10 |
3081 | 3321 | 7.918076 | ACTTAGAATGACCACCATCTTAAGAA | 58.082 | 34.615 | 9.71 | 0.00 | 36.10 | 2.52 |
3082 | 3322 | 8.552296 | ACTTAGAATGACCACCATCTTAAGAAT | 58.448 | 33.333 | 9.71 | 0.00 | 36.10 | 2.40 |
3083 | 3323 | 9.401058 | CTTAGAATGACCACCATCTTAAGAATT | 57.599 | 33.333 | 9.71 | 1.92 | 35.40 | 2.17 |
3085 | 3325 | 8.738645 | AGAATGACCACCATCTTAAGAATTAC | 57.261 | 34.615 | 9.71 | 0.00 | 33.53 | 1.89 |
3086 | 3326 | 8.552296 | AGAATGACCACCATCTTAAGAATTACT | 58.448 | 33.333 | 9.71 | 0.00 | 33.53 | 2.24 |
3087 | 3327 | 8.511604 | AATGACCACCATCTTAAGAATTACTG | 57.488 | 34.615 | 9.71 | 2.62 | 33.53 | 2.74 |
3089 | 3329 | 7.331026 | TGACCACCATCTTAAGAATTACTGAG | 58.669 | 38.462 | 9.71 | 0.53 | 0.00 | 3.35 |
3091 | 3331 | 7.560368 | ACCACCATCTTAAGAATTACTGAGAG | 58.440 | 38.462 | 9.71 | 0.00 | 0.00 | 3.20 |
3092 | 3332 | 7.181125 | ACCACCATCTTAAGAATTACTGAGAGT | 59.819 | 37.037 | 9.71 | 0.00 | 0.00 | 3.24 |
3121 | 3626 | 3.359695 | TTTGGTGTTAGATAGCCACCC | 57.640 | 47.619 | 5.66 | 0.00 | 46.49 | 4.61 |
3269 | 3776 | 7.655328 | CCACCTAATGATAACTCTCAGTCATTC | 59.345 | 40.741 | 3.04 | 0.00 | 40.59 | 2.67 |
3277 | 3784 | 8.807118 | TGATAACTCTCAGTCATTCTAACTTGT | 58.193 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3353 | 3888 | 4.639755 | TGAAACAGATGCTGAAAACAGTCA | 59.360 | 37.500 | 0.82 | 0.00 | 35.18 | 3.41 |
3359 | 3894 | 4.940046 | AGATGCTGAAAACAGTCATTCGAT | 59.060 | 37.500 | 0.00 | 0.00 | 0.00 | 3.59 |
3362 | 3897 | 4.631377 | TGCTGAAAACAGTCATTCGATAGG | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3449 | 3984 | 6.375455 | TCAATTTTCCTTCACAGATAAGCCTC | 59.625 | 38.462 | 0.00 | 0.00 | 0.00 | 4.70 |
3522 | 4093 | 3.285484 | GAGTGATGATGACAGGGCAAAT | 58.715 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
3584 | 4155 | 2.151502 | TTTGAAGGTGAAACTGGGCA | 57.848 | 45.000 | 0.00 | 0.00 | 36.74 | 5.36 |
3585 | 4156 | 2.151502 | TTGAAGGTGAAACTGGGCAA | 57.848 | 45.000 | 0.00 | 0.00 | 36.74 | 4.52 |
3589 | 4160 | 2.452600 | AGGTGAAACTGGGCAAAGAA | 57.547 | 45.000 | 0.00 | 0.00 | 36.74 | 2.52 |
3590 | 4161 | 2.962859 | AGGTGAAACTGGGCAAAGAAT | 58.037 | 42.857 | 0.00 | 0.00 | 36.74 | 2.40 |
3697 | 4286 | 2.769095 | AGGAGGAGTAGCTGTTTCATCC | 59.231 | 50.000 | 15.56 | 15.56 | 40.98 | 3.51 |
3721 | 4310 | 8.041919 | TCCAGGATTAATTGTTCATGTACGTTA | 58.958 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3892 | 4488 | 4.142687 | ACATGCGTAATTAACCAAGCACTC | 60.143 | 41.667 | 0.00 | 0.00 | 37.44 | 3.51 |
3894 | 4490 | 2.096980 | GCGTAATTAACCAAGCACTCCC | 59.903 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3903 | 4499 | 1.529244 | AAGCACTCCCCAACACTGC | 60.529 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
3934 | 4628 | 2.224475 | CCATGAGGGAATCAGCACTAGG | 60.224 | 54.545 | 0.00 | 0.00 | 42.53 | 3.02 |
3944 | 4638 | 2.108168 | TCAGCACTAGGTAGGCGAAAT | 58.892 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
3995 | 4689 | 3.721087 | AATGCCCAAGCTAACAGTAGT | 57.279 | 42.857 | 0.00 | 0.00 | 40.80 | 2.73 |
4039 | 4733 | 2.226437 | GGTTAACCGTGACGACTACTCA | 59.774 | 50.000 | 9.34 | 0.00 | 0.00 | 3.41 |
4075 | 4769 | 0.537143 | AACCCAATCTGACGCTTGCA | 60.537 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 |
4128 | 4822 | 2.094390 | TGCTGTTAAGTAGTAGTGCCGG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
4202 | 4896 | 2.769095 | GAGGACAGGAGCCTAACAAGAT | 59.231 | 50.000 | 0.00 | 0.00 | 35.44 | 2.40 |
4223 | 4975 | 0.107017 | CAGGCAGGATTACACAGGGG | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4357 | 5109 | 2.676748 | AGGTCCTGCCAAAATTCAACA | 58.323 | 42.857 | 0.00 | 0.00 | 40.61 | 3.33 |
4403 | 5169 | 0.109412 | GGCTTCAACATGCACAGCTC | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
4409 | 5175 | 0.957395 | AACATGCACAGCTCTTCCCG | 60.957 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
4427 | 5193 | 5.897377 | TCCCGTAGTAAACTAGTACCAAC | 57.103 | 43.478 | 0.00 | 0.00 | 32.23 | 3.77 |
4469 | 5235 | 8.682710 | GGCAATCTAACAAGTTTGGTATTATGA | 58.317 | 33.333 | 0.00 | 0.00 | 28.54 | 2.15 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 3.863424 | CGACACGTTCCAGTAAGCAATAT | 59.137 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
18 | 19 | 3.247442 | CGACACGTTCCAGTAAGCAATA | 58.753 | 45.455 | 0.00 | 0.00 | 0.00 | 1.90 |
26 | 27 | 2.360165 | ACTAAAGACGACACGTTCCAGT | 59.640 | 45.455 | 0.00 | 0.00 | 41.37 | 4.00 |
27 | 28 | 2.724690 | CACTAAAGACGACACGTTCCAG | 59.275 | 50.000 | 0.00 | 0.00 | 41.37 | 3.86 |
34 | 35 | 3.060473 | GTCAACTGCACTAAAGACGACAC | 60.060 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
37 | 38 | 3.381045 | CTGTCAACTGCACTAAAGACGA | 58.619 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
62 | 63 | 4.381411 | GTTTCAGCTCAGGTCTTAACACT | 58.619 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
63 | 64 | 3.184581 | CGTTTCAGCTCAGGTCTTAACAC | 59.815 | 47.826 | 0.00 | 0.00 | 0.00 | 3.32 |
70 | 72 | 1.149148 | GAACCGTTTCAGCTCAGGTC | 58.851 | 55.000 | 0.00 | 0.00 | 33.50 | 3.85 |
72 | 74 | 0.600255 | ACGAACCGTTTCAGCTCAGG | 60.600 | 55.000 | 0.00 | 0.00 | 36.35 | 3.86 |
93 | 95 | 6.499172 | TCTCGAAGTCAATTATCTGCAGTAG | 58.501 | 40.000 | 14.67 | 0.00 | 0.00 | 2.57 |
95 | 97 | 5.330455 | TCTCGAAGTCAATTATCTGCAGT | 57.670 | 39.130 | 14.67 | 3.75 | 0.00 | 4.40 |
284 | 286 | 3.077556 | TCCTTGGAGAGCGAGGCC | 61.078 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
337 | 339 | 4.286297 | TCCTGAGTTCATTTGATTCGGT | 57.714 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
339 | 341 | 6.316140 | TGGTAATCCTGAGTTCATTTGATTCG | 59.684 | 38.462 | 0.00 | 0.00 | 34.23 | 3.34 |
348 | 350 | 2.355108 | GCTGCTGGTAATCCTGAGTTCA | 60.355 | 50.000 | 0.00 | 0.00 | 35.11 | 3.18 |
362 | 364 | 3.444742 | TGGTAGATTTTTCATGCTGCTGG | 59.555 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
406 | 409 | 7.996644 | GGGGACATGAATAAAAATGTAGGAGTA | 59.003 | 37.037 | 0.00 | 0.00 | 37.15 | 2.59 |
407 | 410 | 6.833933 | GGGGACATGAATAAAAATGTAGGAGT | 59.166 | 38.462 | 0.00 | 0.00 | 37.15 | 3.85 |
408 | 411 | 6.017109 | CGGGGACATGAATAAAAATGTAGGAG | 60.017 | 42.308 | 0.00 | 0.00 | 37.15 | 3.69 |
409 | 412 | 5.825679 | CGGGGACATGAATAAAAATGTAGGA | 59.174 | 40.000 | 0.00 | 0.00 | 37.15 | 2.94 |
410 | 413 | 5.825679 | TCGGGGACATGAATAAAAATGTAGG | 59.174 | 40.000 | 0.00 | 0.00 | 37.15 | 3.18 |
411 | 414 | 6.317642 | TGTCGGGGACATGAATAAAAATGTAG | 59.682 | 38.462 | 0.00 | 0.00 | 37.67 | 2.74 |
427 | 430 | 1.648504 | CGGAAATACTTGTCGGGGAC | 58.351 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
430 | 433 | 2.210116 | CATCCGGAAATACTTGTCGGG | 58.790 | 52.381 | 9.01 | 0.00 | 40.92 | 5.14 |
445 | 448 | 0.601558 | CATACGTACCCCTCCATCCG | 59.398 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
447 | 450 | 3.833070 | AGAATCATACGTACCCCTCCATC | 59.167 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
449 | 452 | 3.323774 | AGAATCATACGTACCCCTCCA | 57.676 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
451 | 454 | 4.583489 | TCTCAAGAATCATACGTACCCCTC | 59.417 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
460 | 464 | 8.843885 | TCATCCATCATTCTCAAGAATCATAC | 57.156 | 34.615 | 2.24 | 0.00 | 42.41 | 2.39 |
461 | 465 | 8.657712 | ACTCATCCATCATTCTCAAGAATCATA | 58.342 | 33.333 | 2.24 | 0.00 | 42.41 | 2.15 |
487 | 491 | 2.031012 | CTTCCTCGCCTGCACACA | 59.969 | 61.111 | 0.00 | 0.00 | 0.00 | 3.72 |
488 | 492 | 3.426568 | GCTTCCTCGCCTGCACAC | 61.427 | 66.667 | 0.00 | 0.00 | 0.00 | 3.82 |
489 | 493 | 3.939939 | TGCTTCCTCGCCTGCACA | 61.940 | 61.111 | 0.00 | 0.00 | 0.00 | 4.57 |
490 | 494 | 3.426568 | GTGCTTCCTCGCCTGCAC | 61.427 | 66.667 | 0.00 | 0.00 | 46.66 | 4.57 |
491 | 495 | 3.182590 | AAGTGCTTCCTCGCCTGCA | 62.183 | 57.895 | 0.00 | 0.00 | 0.00 | 4.41 |
492 | 496 | 2.359230 | AAGTGCTTCCTCGCCTGC | 60.359 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
755 | 763 | 1.218875 | ACACACACACACCATACGCG | 61.219 | 55.000 | 3.53 | 3.53 | 0.00 | 6.01 |
756 | 764 | 0.234625 | CACACACACACACCATACGC | 59.765 | 55.000 | 0.00 | 0.00 | 0.00 | 4.42 |
757 | 765 | 1.260297 | CACACACACACACACCATACG | 59.740 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
758 | 766 | 2.031560 | CACACACACACACACACCATAC | 59.968 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
759 | 767 | 2.284190 | CACACACACACACACACCATA | 58.716 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
760 | 768 | 1.093972 | CACACACACACACACACCAT | 58.906 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
761 | 769 | 0.250510 | ACACACACACACACACACCA | 60.251 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
762 | 770 | 0.167908 | CACACACACACACACACACC | 59.832 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
763 | 771 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
764 | 772 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
765 | 773 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
766 | 774 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
767 | 775 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
768 | 776 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
769 | 777 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
770 | 778 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
771 | 779 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
772 | 780 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
773 | 781 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
774 | 782 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
775 | 783 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
838 | 849 | 2.189594 | TTAATCACTGTGCAGCTGCT | 57.810 | 45.000 | 36.61 | 16.43 | 42.66 | 4.24 |
884 | 897 | 3.244078 | ACGCTGTTCTTGTAGACATGGAA | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
907 | 920 | 2.293677 | TACTGCTACCGACAATGCTG | 57.706 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
914 | 927 | 2.478134 | ACGATCGTATACTGCTACCGAC | 59.522 | 50.000 | 21.32 | 0.00 | 0.00 | 4.79 |
916 | 929 | 2.222678 | ACACGATCGTATACTGCTACCG | 59.777 | 50.000 | 22.26 | 6.35 | 0.00 | 4.02 |
919 | 932 | 4.051237 | ACGTACACGATCGTATACTGCTA | 58.949 | 43.478 | 28.28 | 7.64 | 43.02 | 3.49 |
921 | 934 | 3.244670 | ACGTACACGATCGTATACTGC | 57.755 | 47.619 | 28.28 | 8.52 | 43.02 | 4.40 |
922 | 935 | 5.734035 | TCAAAACGTACACGATCGTATACTG | 59.266 | 40.000 | 28.28 | 23.51 | 43.02 | 2.74 |
923 | 936 | 5.868257 | TCAAAACGTACACGATCGTATACT | 58.132 | 37.500 | 28.28 | 15.99 | 43.02 | 2.12 |
926 | 939 | 4.973396 | TCTCAAAACGTACACGATCGTAT | 58.027 | 39.130 | 22.26 | 13.37 | 43.02 | 3.06 |
927 | 940 | 4.403015 | TCTCAAAACGTACACGATCGTA | 57.597 | 40.909 | 22.26 | 2.95 | 43.02 | 3.43 |
928 | 941 | 3.272439 | TCTCAAAACGTACACGATCGT | 57.728 | 42.857 | 16.60 | 16.60 | 43.02 | 3.73 |
929 | 942 | 3.910170 | TCTTCTCAAAACGTACACGATCG | 59.090 | 43.478 | 14.88 | 14.88 | 43.02 | 3.69 |
930 | 943 | 4.201372 | CGTCTTCTCAAAACGTACACGATC | 60.201 | 45.833 | 9.04 | 0.00 | 43.02 | 3.69 |
931 | 944 | 3.667261 | CGTCTTCTCAAAACGTACACGAT | 59.333 | 43.478 | 9.04 | 0.00 | 43.02 | 3.73 |
932 | 945 | 3.038017 | CGTCTTCTCAAAACGTACACGA | 58.962 | 45.455 | 9.04 | 0.00 | 43.02 | 4.35 |
933 | 946 | 2.408110 | GCGTCTTCTCAAAACGTACACG | 60.408 | 50.000 | 0.00 | 0.00 | 46.33 | 4.49 |
934 | 947 | 2.408110 | CGCGTCTTCTCAAAACGTACAC | 60.408 | 50.000 | 0.00 | 0.00 | 38.60 | 2.90 |
935 | 948 | 1.782569 | CGCGTCTTCTCAAAACGTACA | 59.217 | 47.619 | 0.00 | 0.00 | 38.60 | 2.90 |
936 | 949 | 1.783140 | ACGCGTCTTCTCAAAACGTAC | 59.217 | 47.619 | 5.58 | 0.00 | 38.60 | 3.67 |
937 | 950 | 2.124011 | ACGCGTCTTCTCAAAACGTA | 57.876 | 45.000 | 5.58 | 0.00 | 38.60 | 3.57 |
938 | 951 | 2.049228 | CTACGCGTCTTCTCAAAACGT | 58.951 | 47.619 | 18.63 | 0.00 | 38.60 | 3.99 |
939 | 952 | 1.385743 | CCTACGCGTCTTCTCAAAACG | 59.614 | 52.381 | 18.63 | 0.00 | 39.33 | 3.60 |
940 | 953 | 2.155155 | CACCTACGCGTCTTCTCAAAAC | 59.845 | 50.000 | 18.63 | 0.00 | 0.00 | 2.43 |
941 | 954 | 2.223876 | ACACCTACGCGTCTTCTCAAAA | 60.224 | 45.455 | 18.63 | 0.00 | 0.00 | 2.44 |
942 | 955 | 1.338973 | ACACCTACGCGTCTTCTCAAA | 59.661 | 47.619 | 18.63 | 0.00 | 0.00 | 2.69 |
943 | 956 | 0.956633 | ACACCTACGCGTCTTCTCAA | 59.043 | 50.000 | 18.63 | 0.00 | 0.00 | 3.02 |
944 | 957 | 1.812235 | TACACCTACGCGTCTTCTCA | 58.188 | 50.000 | 18.63 | 0.00 | 0.00 | 3.27 |
945 | 958 | 2.161211 | ACTTACACCTACGCGTCTTCTC | 59.839 | 50.000 | 18.63 | 0.00 | 0.00 | 2.87 |
946 | 959 | 2.095364 | CACTTACACCTACGCGTCTTCT | 60.095 | 50.000 | 18.63 | 0.00 | 0.00 | 2.85 |
947 | 960 | 2.248487 | CACTTACACCTACGCGTCTTC | 58.752 | 52.381 | 18.63 | 0.00 | 0.00 | 2.87 |
948 | 961 | 1.610522 | ACACTTACACCTACGCGTCTT | 59.389 | 47.619 | 18.63 | 0.00 | 0.00 | 3.01 |
949 | 962 | 1.068748 | CACACTTACACCTACGCGTCT | 60.069 | 52.381 | 18.63 | 0.00 | 0.00 | 4.18 |
950 | 963 | 1.334054 | CACACTTACACCTACGCGTC | 58.666 | 55.000 | 18.63 | 0.00 | 0.00 | 5.19 |
951 | 964 | 0.665369 | GCACACTTACACCTACGCGT | 60.665 | 55.000 | 19.17 | 19.17 | 0.00 | 6.01 |
952 | 965 | 1.670971 | CGCACACTTACACCTACGCG | 61.671 | 60.000 | 3.53 | 3.53 | 35.14 | 6.01 |
953 | 966 | 1.952266 | GCGCACACTTACACCTACGC | 61.952 | 60.000 | 0.30 | 0.00 | 38.17 | 4.42 |
954 | 967 | 1.349259 | GGCGCACACTTACACCTACG | 61.349 | 60.000 | 10.83 | 0.00 | 0.00 | 3.51 |
955 | 968 | 1.349259 | CGGCGCACACTTACACCTAC | 61.349 | 60.000 | 10.83 | 0.00 | 0.00 | 3.18 |
956 | 969 | 1.080366 | CGGCGCACACTTACACCTA | 60.080 | 57.895 | 10.83 | 0.00 | 0.00 | 3.08 |
957 | 970 | 2.357034 | CGGCGCACACTTACACCT | 60.357 | 61.111 | 10.83 | 0.00 | 0.00 | 4.00 |
958 | 971 | 2.663852 | ACGGCGCACACTTACACC | 60.664 | 61.111 | 10.83 | 0.00 | 0.00 | 4.16 |
959 | 972 | 1.768112 | AACACGGCGCACACTTACAC | 61.768 | 55.000 | 10.83 | 0.00 | 0.00 | 2.90 |
960 | 973 | 1.090625 | AAACACGGCGCACACTTACA | 61.091 | 50.000 | 10.83 | 0.00 | 0.00 | 2.41 |
961 | 974 | 0.656205 | CAAACACGGCGCACACTTAC | 60.656 | 55.000 | 10.83 | 0.00 | 0.00 | 2.34 |
962 | 975 | 1.644372 | CAAACACGGCGCACACTTA | 59.356 | 52.632 | 10.83 | 0.00 | 0.00 | 2.24 |
963 | 976 | 2.407210 | CAAACACGGCGCACACTT | 59.593 | 55.556 | 10.83 | 0.00 | 0.00 | 3.16 |
964 | 977 | 4.250431 | GCAAACACGGCGCACACT | 62.250 | 61.111 | 10.83 | 0.00 | 0.00 | 3.55 |
965 | 978 | 4.250431 | AGCAAACACGGCGCACAC | 62.250 | 61.111 | 10.83 | 0.00 | 36.08 | 3.82 |
966 | 979 | 4.249020 | CAGCAAACACGGCGCACA | 62.249 | 61.111 | 10.83 | 0.00 | 36.08 | 4.57 |
967 | 980 | 4.980903 | CCAGCAAACACGGCGCAC | 62.981 | 66.667 | 10.83 | 0.00 | 36.08 | 5.34 |
969 | 982 | 4.264638 | AACCAGCAAACACGGCGC | 62.265 | 61.111 | 6.90 | 0.00 | 36.08 | 6.53 |
970 | 983 | 2.051345 | GAACCAGCAAACACGGCG | 60.051 | 61.111 | 4.80 | 4.80 | 36.08 | 6.46 |
971 | 984 | 1.008538 | CTGAACCAGCAAACACGGC | 60.009 | 57.895 | 0.00 | 0.00 | 0.00 | 5.68 |
972 | 985 | 1.654220 | CCTGAACCAGCAAACACGG | 59.346 | 57.895 | 0.00 | 0.00 | 0.00 | 4.94 |
973 | 986 | 1.008538 | GCCTGAACCAGCAAACACG | 60.009 | 57.895 | 0.00 | 0.00 | 0.00 | 4.49 |
974 | 987 | 0.031178 | CAGCCTGAACCAGCAAACAC | 59.969 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
975 | 988 | 1.108727 | CCAGCCTGAACCAGCAAACA | 61.109 | 55.000 | 0.00 | 0.00 | 0.00 | 2.83 |
978 | 991 | 0.396974 | AAACCAGCCTGAACCAGCAA | 60.397 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
985 | 998 | 1.340889 | GCACATCAAAACCAGCCTGAA | 59.659 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
1022 | 1037 | 1.350071 | AATTGTGCAATGGCCCTCAA | 58.650 | 45.000 | 0.00 | 0.00 | 40.13 | 3.02 |
1023 | 1038 | 2.101783 | CTAATTGTGCAATGGCCCTCA | 58.898 | 47.619 | 0.00 | 0.00 | 40.13 | 3.86 |
1024 | 1039 | 2.378038 | TCTAATTGTGCAATGGCCCTC | 58.622 | 47.619 | 0.00 | 0.00 | 40.13 | 4.30 |
1025 | 1040 | 2.530460 | TCTAATTGTGCAATGGCCCT | 57.470 | 45.000 | 0.00 | 0.00 | 40.13 | 5.19 |
1026 | 1041 | 3.524541 | CTTTCTAATTGTGCAATGGCCC | 58.475 | 45.455 | 0.00 | 0.00 | 40.13 | 5.80 |
1027 | 1042 | 3.524541 | CCTTTCTAATTGTGCAATGGCC | 58.475 | 45.455 | 0.00 | 0.00 | 40.13 | 5.36 |
1028 | 1043 | 2.931969 | GCCTTTCTAATTGTGCAATGGC | 59.068 | 45.455 | 0.00 | 2.64 | 41.68 | 4.40 |
1029 | 1044 | 4.460948 | AGCCTTTCTAATTGTGCAATGG | 57.539 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
1030 | 1045 | 5.232463 | ACAAGCCTTTCTAATTGTGCAATG | 58.768 | 37.500 | 0.00 | 0.00 | 34.71 | 2.82 |
1031 | 1046 | 5.473066 | ACAAGCCTTTCTAATTGTGCAAT | 57.527 | 34.783 | 0.00 | 0.00 | 34.71 | 3.56 |
1032 | 1047 | 4.935352 | ACAAGCCTTTCTAATTGTGCAA | 57.065 | 36.364 | 0.00 | 0.00 | 34.71 | 4.08 |
1033 | 1048 | 4.935352 | AACAAGCCTTTCTAATTGTGCA | 57.065 | 36.364 | 0.00 | 0.00 | 36.09 | 4.57 |
1034 | 1049 | 5.288804 | TCAAACAAGCCTTTCTAATTGTGC | 58.711 | 37.500 | 0.00 | 0.00 | 36.09 | 4.57 |
1035 | 1050 | 6.507023 | ACTCAAACAAGCCTTTCTAATTGTG | 58.493 | 36.000 | 0.00 | 0.00 | 36.09 | 3.33 |
1036 | 1051 | 6.715347 | ACTCAAACAAGCCTTTCTAATTGT | 57.285 | 33.333 | 0.00 | 0.00 | 37.47 | 2.71 |
1037 | 1052 | 8.099364 | TCTACTCAAACAAGCCTTTCTAATTG | 57.901 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
1042 | 1057 | 4.068599 | GCTCTACTCAAACAAGCCTTTCT | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
1064 | 1079 | 0.598562 | ATCTAGATGGGCTGTACGCG | 59.401 | 55.000 | 3.53 | 3.53 | 40.44 | 6.01 |
1067 | 1087 | 8.154856 | TGGTTTTATTATCTAGATGGGCTGTAC | 58.845 | 37.037 | 15.79 | 5.50 | 0.00 | 2.90 |
1079 | 1099 | 8.225863 | TGATATGGGCCTGGTTTTATTATCTA | 57.774 | 34.615 | 4.53 | 0.00 | 0.00 | 1.98 |
1081 | 1101 | 7.451566 | AGTTGATATGGGCCTGGTTTTATTATC | 59.548 | 37.037 | 4.53 | 0.00 | 0.00 | 1.75 |
1091 | 1111 | 2.301346 | GTTGAGTTGATATGGGCCTGG | 58.699 | 52.381 | 4.53 | 0.00 | 0.00 | 4.45 |
1143 | 1207 | 2.151202 | GGAACTGTGAAATTGCCTCGA | 58.849 | 47.619 | 0.00 | 0.00 | 0.00 | 4.04 |
1145 | 1209 | 4.590850 | AAAGGAACTGTGAAATTGCCTC | 57.409 | 40.909 | 0.00 | 0.00 | 40.86 | 4.70 |
1159 | 1223 | 5.476091 | TTCTTCTCTCTCTCCAAAGGAAC | 57.524 | 43.478 | 0.00 | 0.00 | 0.00 | 3.62 |
1221 | 1285 | 2.363795 | TACTCCGTCAGGGGCTGG | 60.364 | 66.667 | 0.00 | 0.00 | 43.67 | 4.85 |
1365 | 1429 | 0.112412 | TCTGTTTTCTCTTGGCCCCC | 59.888 | 55.000 | 0.00 | 0.00 | 0.00 | 5.40 |
1366 | 1430 | 1.889170 | CTTCTGTTTTCTCTTGGCCCC | 59.111 | 52.381 | 0.00 | 0.00 | 0.00 | 5.80 |
1536 | 1603 | 3.660501 | GGATTGGTTCCACTGGAAAAC | 57.339 | 47.619 | 12.33 | 9.09 | 43.86 | 2.43 |
1551 | 1618 | 1.496429 | AGGGCCTGGATTAGTGGATTG | 59.504 | 52.381 | 4.50 | 0.00 | 0.00 | 2.67 |
1612 | 1712 | 7.611467 | TGGCATTACAACTGATGAGAAAAGTAT | 59.389 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
1613 | 1713 | 6.939730 | TGGCATTACAACTGATGAGAAAAGTA | 59.060 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
1620 | 1720 | 5.240183 | CCCTAATGGCATTACAACTGATGAG | 59.760 | 44.000 | 15.73 | 4.31 | 0.00 | 2.90 |
1647 | 1747 | 0.542467 | ATGCCATGAACAAGCCCACA | 60.542 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1672 | 1772 | 8.101654 | ACCGTGATTTAGCAATTTAACTTGTA | 57.898 | 30.769 | 7.31 | 0.00 | 0.00 | 2.41 |
1673 | 1773 | 6.977213 | ACCGTGATTTAGCAATTTAACTTGT | 58.023 | 32.000 | 7.31 | 0.00 | 0.00 | 3.16 |
1700 | 1800 | 7.041508 | GCTTGTGTTCTGCTTAGATATTGCTAT | 60.042 | 37.037 | 0.00 | 0.00 | 0.00 | 2.97 |
1726 | 1827 | 5.577945 | CCATTGTGCAGCAAAACCTATTAAG | 59.422 | 40.000 | 0.00 | 0.00 | 40.91 | 1.85 |
1729 | 1830 | 3.577848 | TCCATTGTGCAGCAAAACCTATT | 59.422 | 39.130 | 0.00 | 0.00 | 40.91 | 1.73 |
1734 | 1835 | 2.481185 | CCAATCCATTGTGCAGCAAAAC | 59.519 | 45.455 | 0.00 | 0.00 | 40.91 | 2.43 |
1739 | 1840 | 1.466856 | TCTCCAATCCATTGTGCAGC | 58.533 | 50.000 | 0.00 | 0.00 | 36.06 | 5.25 |
1762 | 1863 | 7.160726 | GGAATTTCACATTCCATTTCTTTGGA | 58.839 | 34.615 | 8.47 | 0.00 | 45.21 | 3.53 |
1822 | 1928 | 7.192232 | CAGAGGAAAGAAAACTATGCATTAGC | 58.808 | 38.462 | 3.54 | 0.00 | 42.57 | 3.09 |
1842 | 1948 | 3.146104 | TCCCTGAAAAGAAAGCAGAGG | 57.854 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
1932 | 2041 | 3.667960 | GCGTCATCATCCATAAAATCGGC | 60.668 | 47.826 | 0.00 | 0.00 | 0.00 | 5.54 |
2028 | 2137 | 4.006319 | GAGTGGAAAAAGGATCAGGAGTG | 58.994 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
2213 | 2324 | 5.710099 | CCTTAACAGGTGTGGTATTGTCATT | 59.290 | 40.000 | 0.00 | 0.00 | 35.06 | 2.57 |
2239 | 2350 | 6.594159 | TCTTTGTCTTCCTATTTTTAGCGGAG | 59.406 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
2449 | 2560 | 8.040727 | GGAACTCAGGTTTTAAATGCCATAAAT | 58.959 | 33.333 | 10.67 | 0.00 | 35.58 | 1.40 |
2784 | 3020 | 4.878397 | ACAGTGACAAGAAAAGAGGAACTG | 59.122 | 41.667 | 0.00 | 0.00 | 41.55 | 3.16 |
2877 | 3114 | 1.604278 | GCGATGTATCCTTTTCCAGCC | 59.396 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
3056 | 3296 | 7.496346 | TCTTAAGATGGTGGTCATTCTAAGT | 57.504 | 36.000 | 0.00 | 0.00 | 35.97 | 2.24 |
3057 | 3297 | 8.970859 | ATTCTTAAGATGGTGGTCATTCTAAG | 57.029 | 34.615 | 5.89 | 0.00 | 35.97 | 2.18 |
3065 | 3305 | 7.556844 | TCTCAGTAATTCTTAAGATGGTGGTC | 58.443 | 38.462 | 5.89 | 0.00 | 0.00 | 4.02 |
3066 | 3306 | 7.181125 | ACTCTCAGTAATTCTTAAGATGGTGGT | 59.819 | 37.037 | 5.89 | 0.00 | 0.00 | 4.16 |
3067 | 3307 | 7.560368 | ACTCTCAGTAATTCTTAAGATGGTGG | 58.440 | 38.462 | 5.89 | 0.00 | 0.00 | 4.61 |
3119 | 3624 | 3.632145 | AGTAGTGCAAGTTGACAAAAGGG | 59.368 | 43.478 | 7.16 | 0.00 | 0.00 | 3.95 |
3121 | 3626 | 5.484173 | TCAGTAGTGCAAGTTGACAAAAG | 57.516 | 39.130 | 7.16 | 0.00 | 0.00 | 2.27 |
3277 | 3784 | 6.374333 | GCTGTTGGAATCCATGTTCTAGTTAA | 59.626 | 38.462 | 1.39 | 0.00 | 31.53 | 2.01 |
3353 | 3888 | 1.051812 | CTGGCAGGTCCCTATCGAAT | 58.948 | 55.000 | 6.61 | 0.00 | 0.00 | 3.34 |
3359 | 3894 | 3.672338 | TAGCGCTGGCAGGTCCCTA | 62.672 | 63.158 | 22.90 | 0.00 | 43.41 | 3.53 |
3362 | 3897 | 2.876368 | ATTGTAGCGCTGGCAGGTCC | 62.876 | 60.000 | 22.90 | 0.00 | 43.41 | 4.46 |
3449 | 3984 | 1.490693 | CGATGGTGCGGAATTCCTCG | 61.491 | 60.000 | 22.05 | 18.01 | 0.00 | 4.63 |
3491 | 4026 | 1.070445 | CATCATCACTCCTCTGGCTCC | 59.930 | 57.143 | 0.00 | 0.00 | 0.00 | 4.70 |
3538 | 4109 | 6.018180 | CCATGCCGTCTTAATAGTTAGGTTTC | 60.018 | 42.308 | 0.00 | 0.00 | 0.00 | 2.78 |
3584 | 4155 | 0.700564 | TCCAGGCTCCAGCATTCTTT | 59.299 | 50.000 | 0.03 | 0.00 | 44.36 | 2.52 |
3585 | 4156 | 0.255318 | CTCCAGGCTCCAGCATTCTT | 59.745 | 55.000 | 0.03 | 0.00 | 44.36 | 2.52 |
3652 | 4223 | 2.121948 | AGGACCTTGATATGCAGCTCA | 58.878 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
3721 | 4310 | 6.160105 | AGTGGTCCCTAGTAGTACTACTCAAT | 59.840 | 42.308 | 33.47 | 21.72 | 44.58 | 2.57 |
3736 | 4325 | 1.071699 | GAACAGCAACAGTGGTCCCTA | 59.928 | 52.381 | 0.00 | 0.00 | 31.53 | 3.53 |
3737 | 4326 | 0.179018 | GAACAGCAACAGTGGTCCCT | 60.179 | 55.000 | 0.00 | 0.00 | 31.53 | 4.20 |
3892 | 4488 | 3.130340 | GGTATATTTGTGCAGTGTTGGGG | 59.870 | 47.826 | 0.00 | 0.00 | 0.00 | 4.96 |
3894 | 4490 | 5.125257 | TCATGGTATATTTGTGCAGTGTTGG | 59.875 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3903 | 4499 | 6.072286 | GCTGATTCCCTCATGGTATATTTGTG | 60.072 | 42.308 | 0.00 | 0.00 | 32.10 | 3.33 |
4039 | 4733 | 1.064979 | GGTTGACCATCATACCCGGTT | 60.065 | 52.381 | 0.00 | 0.00 | 35.64 | 4.44 |
4075 | 4769 | 2.102588 | GGGTATGATGTCGCCTGTAGTT | 59.897 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4128 | 4822 | 3.557185 | TCTGATGCGCTCATTTACATGTC | 59.443 | 43.478 | 9.73 | 0.00 | 32.10 | 3.06 |
4202 | 4896 | 0.035152 | CCTGTGTAATCCTGCCTGCA | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
4244 | 4996 | 1.180029 | CTGGGAATTCTGCTGGGTTG | 58.820 | 55.000 | 5.23 | 0.00 | 0.00 | 3.77 |
4300 | 5052 | 1.087771 | GCAAGCAGAATGGCAATGGC | 61.088 | 55.000 | 0.00 | 0.00 | 35.86 | 4.40 |
4403 | 5169 | 6.071952 | TGTTGGTACTAGTTTACTACGGGAAG | 60.072 | 42.308 | 0.00 | 0.00 | 0.00 | 3.46 |
4409 | 5175 | 9.662947 | ATTGGAATGTTGGTACTAGTTTACTAC | 57.337 | 33.333 | 0.00 | 0.01 | 0.00 | 2.73 |
4427 | 5193 | 4.344102 | AGATTGCCCTTCATGATTGGAATG | 59.656 | 41.667 | 13.71 | 1.76 | 0.00 | 2.67 |
4469 | 5235 | 5.305128 | CCCACAACCTATTGCATCCATAAAT | 59.695 | 40.000 | 0.00 | 0.00 | 39.66 | 1.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.