Multiple sequence alignment - TraesCS2B01G385000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G385000 chr2B 100.000 3116 0 0 1 3116 548649724 548652839 0.000000e+00 5755.0
1 TraesCS2B01G385000 chr2B 82.651 611 57 22 4 606 548629962 548630531 2.160000e-136 496.0
2 TraesCS2B01G385000 chr2B 82.639 144 24 1 2891 3034 198448865 198449007 3.260000e-25 126.0
3 TraesCS2B01G385000 chr2A 89.985 2656 137 53 33 2665 611309466 611312015 0.000000e+00 3312.0
4 TraesCS2B01G385000 chr2D 91.025 2440 128 49 266 2665 469999276 470001664 0.000000e+00 3208.0
5 TraesCS2B01G385000 chr2D 90.654 107 10 0 1 107 469996477 469996583 3.240000e-30 143.0
6 TraesCS2B01G385000 chr7D 89.951 607 52 6 685 1288 418398831 418398231 0.000000e+00 774.0
7 TraesCS2B01G385000 chr7D 87.850 107 9 1 509 615 418398951 418398849 4.220000e-24 122.0
8 TraesCS2B01G385000 chr5A 81.270 614 93 17 1146 1750 385398457 385397857 7.820000e-131 477.0
9 TraesCS2B01G385000 chr5A 83.235 340 52 4 1778 2116 385395798 385395463 1.090000e-79 307.0
10 TraesCS2B01G385000 chr5A 84.247 146 20 2 2900 3042 120305544 120305689 4.190000e-29 139.0
11 TraesCS2B01G385000 chr5D 79.201 726 115 27 1045 1750 292698750 292698041 3.640000e-129 472.0
12 TraesCS2B01G385000 chr5D 82.883 333 54 1 1784 2116 292695793 292695464 2.350000e-76 296.0
13 TraesCS2B01G385000 chr5B 88.400 250 29 0 1501 1750 333256120 333255871 5.050000e-78 302.0
14 TraesCS2B01G385000 chr5B 81.982 333 57 1 1784 2116 333252579 333252250 2.370000e-71 279.0
15 TraesCS2B01G385000 chr5B 84.766 256 39 0 1146 1401 333256470 333256215 1.110000e-64 257.0
16 TraesCS2B01G385000 chr5B 86.765 136 16 2 2900 3034 393756470 393756336 1.940000e-32 150.0
17 TraesCS2B01G385000 chr5B 81.250 128 21 2 2900 3027 472938070 472938194 1.980000e-17 100.0
18 TraesCS2B01G385000 chr6A 88.722 133 15 0 2902 3034 578048397 578048529 2.490000e-36 163.0
19 TraesCS2B01G385000 chr4A 87.407 135 17 0 2900 3034 556184820 556184686 4.160000e-34 156.0
20 TraesCS2B01G385000 chr4A 82.036 167 23 5 2879 3045 260936753 260936912 5.420000e-28 135.0
21 TraesCS2B01G385000 chrUn 86.667 135 18 0 2900 3034 314173270 314173136 1.940000e-32 150.0
22 TraesCS2B01G385000 chr7B 86.567 134 16 2 2900 3032 393707565 393707433 2.500000e-31 147.0
23 TraesCS2B01G385000 chr7B 90.741 54 5 0 2776 2829 57269841 57269788 4.310000e-09 73.1
24 TraesCS2B01G385000 chr3B 83.750 160 20 3 2879 3038 82291865 82292018 2.500000e-31 147.0
25 TraesCS2B01G385000 chr3B 76.754 228 34 18 2778 2991 703118941 703118719 3.290000e-20 110.0
26 TraesCS2B01G385000 chr3A 84.314 153 18 2 2882 3034 711492245 711492391 9.010000e-31 145.0
27 TraesCS2B01G385000 chr3A 90.741 54 5 0 2775 2828 366853526 366853579 4.310000e-09 73.1
28 TraesCS2B01G385000 chr1A 84.247 146 20 3 2900 3042 209507533 209507388 4.190000e-29 139.0
29 TraesCS2B01G385000 chr4B 95.918 49 2 0 2775 2823 89292570 89292618 2.580000e-11 80.5
30 TraesCS2B01G385000 chr6D 90.909 55 5 0 2778 2832 333774020 333773966 1.200000e-09 75.0
31 TraesCS2B01G385000 chr6B 92.308 52 4 0 2778 2829 219438871 219438820 1.200000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G385000 chr2B 548649724 548652839 3115 False 5755.000000 5755 100.000000 1 3116 1 chr2B.!!$F3 3115
1 TraesCS2B01G385000 chr2B 548629962 548630531 569 False 496.000000 496 82.651000 4 606 1 chr2B.!!$F2 602
2 TraesCS2B01G385000 chr2A 611309466 611312015 2549 False 3312.000000 3312 89.985000 33 2665 1 chr2A.!!$F1 2632
3 TraesCS2B01G385000 chr2D 469996477 470001664 5187 False 1675.500000 3208 90.839500 1 2665 2 chr2D.!!$F1 2664
4 TraesCS2B01G385000 chr7D 418398231 418398951 720 True 448.000000 774 88.900500 509 1288 2 chr7D.!!$R1 779
5 TraesCS2B01G385000 chr5A 385395463 385398457 2994 True 392.000000 477 82.252500 1146 2116 2 chr5A.!!$R1 970
6 TraesCS2B01G385000 chr5D 292695464 292698750 3286 True 384.000000 472 81.042000 1045 2116 2 chr5D.!!$R1 1071
7 TraesCS2B01G385000 chr5B 333252250 333256470 4220 True 279.333333 302 85.049333 1146 2116 3 chr5B.!!$R2 970

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 3030 0.188342 AAATGGCTGTGGGAGGTTGT 59.812 50.0 0.00 0.0 0.00 3.32 F
1433 3994 0.248565 AGCTCGATCTTGCTTGCTCA 59.751 50.0 3.87 0.0 35.86 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2028 8095 0.037326 GGTTGTCGAGGATGAGCACA 60.037 55.0 0.0 0.0 0.0 4.57 R
2517 8626 0.032912 TGCTGCATCCACCCATGATT 60.033 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.150848 CTCGTTGTCTAGCATGCTACA 57.849 47.619 23.52 20.23 0.00 2.74
49 50 2.116238 AGCGCTAAATAGAAGGTCCCA 58.884 47.619 8.99 0.00 0.00 4.37
77 78 4.394729 GTGATGGTGAAAAGTAAGGGTGA 58.605 43.478 0.00 0.00 0.00 4.02
107 108 3.499338 TGAGACAAAATTGAGCCATGGT 58.501 40.909 14.67 0.00 0.00 3.55
108 109 3.507233 TGAGACAAAATTGAGCCATGGTC 59.493 43.478 14.67 10.27 0.00 4.02
109 110 3.760684 GAGACAAAATTGAGCCATGGTCT 59.239 43.478 14.67 11.07 37.10 3.85
256 717 3.899734 TGTTCAGCATGGAAATCAAACG 58.100 40.909 0.00 0.00 36.16 3.60
290 2827 1.886886 TTAGTTTTCACGAGGGGCAC 58.113 50.000 0.00 0.00 0.00 5.01
309 2848 2.226437 CACGTTCCTTTAGCAAGCATGT 59.774 45.455 0.00 0.00 0.00 3.21
320 2859 2.551459 AGCAAGCATGTCACTTCAGTTC 59.449 45.455 0.00 0.00 0.00 3.01
346 2887 7.936496 TTGTCAGAATTTGCCATACTTGATA 57.064 32.000 0.00 0.00 0.00 2.15
400 2943 6.279227 TGCCATAAAAACGTTCAATTTGTG 57.721 33.333 0.00 7.43 0.00 3.33
483 3028 0.482446 TCAAATGGCTGTGGGAGGTT 59.518 50.000 0.00 0.00 0.00 3.50
484 3029 0.604578 CAAATGGCTGTGGGAGGTTG 59.395 55.000 0.00 0.00 0.00 3.77
485 3030 0.188342 AAATGGCTGTGGGAGGTTGT 59.812 50.000 0.00 0.00 0.00 3.32
486 3031 0.540365 AATGGCTGTGGGAGGTTGTG 60.540 55.000 0.00 0.00 0.00 3.33
487 3032 2.282462 GGCTGTGGGAGGTTGTGG 60.282 66.667 0.00 0.00 0.00 4.17
488 3033 2.829384 GGCTGTGGGAGGTTGTGGA 61.829 63.158 0.00 0.00 0.00 4.02
489 3034 1.600916 GCTGTGGGAGGTTGTGGAC 60.601 63.158 0.00 0.00 0.00 4.02
490 3035 2.056906 GCTGTGGGAGGTTGTGGACT 62.057 60.000 0.00 0.00 0.00 3.85
541 3086 6.645415 TCTCTTCGATTAGGACTTGTTGTTTC 59.355 38.462 0.00 0.00 0.00 2.78
652 3198 1.902918 AATGCAAAGGACGCCAGCA 60.903 52.632 0.00 10.93 39.79 4.41
768 3315 7.093992 ACAAAAAGAAAACGGAACTTTCATGA 58.906 30.769 0.00 0.00 35.62 3.07
867 3416 3.006110 AGTTGCATGGTTTCCATCACAAG 59.994 43.478 11.55 0.00 43.15 3.16
903 3452 1.469251 CCTCCGAACTGTCACCGTATG 60.469 57.143 0.00 0.00 0.00 2.39
956 3506 0.902531 AGGCACGCACTACCAAGTAT 59.097 50.000 0.00 0.00 33.48 2.12
958 3508 0.921347 GCACGCACTACCAAGTATCG 59.079 55.000 0.00 0.00 37.10 2.92
960 3510 2.798499 GCACGCACTACCAAGTATCGAT 60.798 50.000 2.16 2.16 35.84 3.59
961 3511 3.043586 CACGCACTACCAAGTATCGATC 58.956 50.000 0.00 0.00 35.84 3.69
962 3512 2.034305 ACGCACTACCAAGTATCGATCC 59.966 50.000 0.00 0.00 35.84 3.36
963 3513 2.034179 CGCACTACCAAGTATCGATCCA 59.966 50.000 0.00 0.00 34.62 3.41
965 3515 3.629058 CACTACCAAGTATCGATCCACG 58.371 50.000 0.00 0.00 37.62 4.94
967 3517 4.201980 CACTACCAAGTATCGATCCACGAA 60.202 45.833 0.00 0.00 43.83 3.85
968 3518 5.507482 CACTACCAAGTATCGATCCACGAAT 60.507 44.000 0.00 0.00 43.83 3.34
1200 3761 1.554583 GGGTGGAGGAGAAGGTGGTC 61.555 65.000 0.00 0.00 0.00 4.02
1406 3967 3.204526 AGATGGTCCTCGTAAGTACTCG 58.795 50.000 0.00 0.00 39.48 4.18
1407 3968 2.768253 TGGTCCTCGTAAGTACTCGA 57.232 50.000 6.51 6.51 39.48 4.04
1433 3994 0.248565 AGCTCGATCTTGCTTGCTCA 59.751 50.000 3.87 0.00 35.86 4.26
1470 4031 0.537653 TAATTGATGGACGGACGGCA 59.462 50.000 0.00 0.00 0.00 5.69
1530 4158 0.252742 AGATCAAGGAGTTCCCGGGT 60.253 55.000 22.86 0.00 40.87 5.28
2028 8095 3.470888 CGGTGGGAGAAGGGCGAT 61.471 66.667 0.00 0.00 0.00 4.58
2052 8119 1.874019 CATCCTCGACAACCTCGCG 60.874 63.158 0.00 0.00 42.62 5.87
2145 8216 8.531146 CATTTCATCACCCACCTTAACTAATTT 58.469 33.333 0.00 0.00 0.00 1.82
2146 8217 9.762381 ATTTCATCACCCACCTTAACTAATTTA 57.238 29.630 0.00 0.00 0.00 1.40
2175 8246 2.691409 TTAAGCTTGAGGATGGACCG 57.309 50.000 9.86 0.00 44.74 4.79
2214 8285 0.690762 TCTTAGTTGGTGCTGGGGAC 59.309 55.000 0.00 0.00 0.00 4.46
2215 8286 0.673644 CTTAGTTGGTGCTGGGGACG 60.674 60.000 0.00 0.00 0.00 4.79
2216 8287 1.122632 TTAGTTGGTGCTGGGGACGA 61.123 55.000 0.00 0.00 0.00 4.20
2221 8292 2.731571 GGTGCTGGGGACGATGCTA 61.732 63.158 0.00 0.00 0.00 3.49
2251 8325 7.796054 TGGCTCTTCTATAATAAGCTGTCTTT 58.204 34.615 0.00 0.00 33.85 2.52
2252 8326 8.924303 TGGCTCTTCTATAATAAGCTGTCTTTA 58.076 33.333 0.00 0.00 33.85 1.85
2253 8327 9.936759 GGCTCTTCTATAATAAGCTGTCTTTAT 57.063 33.333 0.00 0.00 33.85 1.40
2279 8354 7.331687 TGTTAGTTACTACGGTAAAATGGCTTC 59.668 37.037 0.00 0.00 39.29 3.86
2286 8361 2.791158 CGGTAAAATGGCTTCGTGCATC 60.791 50.000 0.00 0.00 45.15 3.91
2287 8362 2.423538 GGTAAAATGGCTTCGTGCATCT 59.576 45.455 0.00 0.00 45.15 2.90
2288 8363 3.119495 GGTAAAATGGCTTCGTGCATCTT 60.119 43.478 0.00 0.00 45.15 2.40
2289 8364 4.095782 GGTAAAATGGCTTCGTGCATCTTA 59.904 41.667 0.00 0.00 45.15 2.10
2311 8386 0.326048 ATGCAGAGGCTGGGTACTCT 60.326 55.000 0.00 0.00 44.50 3.24
2312 8387 0.545309 TGCAGAGGCTGGGTACTCTT 60.545 55.000 0.00 0.00 41.90 2.85
2316 8391 3.307480 GCAGAGGCTGGGTACTCTTTTTA 60.307 47.826 0.00 0.00 41.90 1.52
2318 8393 3.056035 AGAGGCTGGGTACTCTTTTTACG 60.056 47.826 0.00 0.00 41.05 3.18
2322 8397 3.683340 GCTGGGTACTCTTTTTACGGAAG 59.317 47.826 0.00 0.00 0.00 3.46
2327 8402 6.484308 TGGGTACTCTTTTTACGGAAGAAAAG 59.516 38.462 0.00 0.00 41.77 2.27
2328 8403 6.369005 GGTACTCTTTTTACGGAAGAAAAGC 58.631 40.000 0.39 0.00 40.77 3.51
2329 8404 5.434352 ACTCTTTTTACGGAAGAAAAGCC 57.566 39.130 0.39 0.00 40.77 4.35
2393 8471 6.145696 GTCGGCTTAATACTTATTACAGCCAG 59.854 42.308 23.93 19.68 43.33 4.85
2394 8472 5.408604 CGGCTTAATACTTATTACAGCCAGG 59.591 44.000 23.93 14.64 43.33 4.45
2397 8475 6.996282 GCTTAATACTTATTACAGCCAGGGAA 59.004 38.462 0.00 0.00 32.48 3.97
2420 8498 3.842436 GGGTGAGGTAGTTTCTCCCTTAA 59.158 47.826 5.38 0.00 42.47 1.85
2421 8499 4.473922 GGGTGAGGTAGTTTCTCCCTTAAT 59.526 45.833 5.38 0.00 42.47 1.40
2422 8500 5.045066 GGGTGAGGTAGTTTCTCCCTTAATT 60.045 44.000 5.38 0.00 42.47 1.40
2423 8501 6.157471 GGGTGAGGTAGTTTCTCCCTTAATTA 59.843 42.308 5.38 0.00 42.47 1.40
2424 8502 7.147355 GGGTGAGGTAGTTTCTCCCTTAATTAT 60.147 40.741 5.38 0.00 42.47 1.28
2425 8503 8.272889 GGTGAGGTAGTTTCTCCCTTAATTATT 58.727 37.037 0.00 0.00 0.00 1.40
2470 8579 1.565288 TCCATCATCATGCTGGGTGAA 59.435 47.619 7.69 0.00 34.57 3.18
2500 8609 5.813080 ACGACATGTAAGGCTTATTTTCC 57.187 39.130 10.65 0.00 0.00 3.13
2511 8620 5.602628 AGGCTTATTTTCCTCGAGTGATAC 58.397 41.667 12.31 0.00 0.00 2.24
2512 8621 5.364157 AGGCTTATTTTCCTCGAGTGATACT 59.636 40.000 12.31 1.40 0.00 2.12
2513 8622 6.550108 AGGCTTATTTTCCTCGAGTGATACTA 59.450 38.462 12.31 0.53 0.00 1.82
2514 8623 7.069578 AGGCTTATTTTCCTCGAGTGATACTAA 59.930 37.037 12.31 7.54 0.00 2.24
2516 8625 9.262358 GCTTATTTTCCTCGAGTGATACTAAAT 57.738 33.333 12.31 12.17 0.00 1.40
2523 8632 9.914131 TTCCTCGAGTGATACTAAATAATCATG 57.086 33.333 12.31 0.00 34.77 3.07
2524 8633 8.523658 TCCTCGAGTGATACTAAATAATCATGG 58.476 37.037 12.31 0.00 34.77 3.66
2525 8634 7.761704 CCTCGAGTGATACTAAATAATCATGGG 59.238 40.741 12.31 0.00 34.77 4.00
2528 8637 7.331934 CGAGTGATACTAAATAATCATGGGTGG 59.668 40.741 0.00 0.00 34.77 4.61
2565 8674 8.840833 TTATGCATCTTCTGTTTACTGTTGTA 57.159 30.769 0.19 0.00 0.00 2.41
2566 8675 6.539649 TGCATCTTCTGTTTACTGTTGTAC 57.460 37.500 0.00 0.00 0.00 2.90
2567 8676 6.288294 TGCATCTTCTGTTTACTGTTGTACT 58.712 36.000 0.00 0.00 0.00 2.73
2599 8708 4.661125 CATGAATACATGTCGTTGTTGGG 58.339 43.478 0.00 0.00 46.01 4.12
2600 8709 2.486203 TGAATACATGTCGTTGTTGGGC 59.514 45.455 0.00 0.00 0.00 5.36
2601 8710 2.192664 ATACATGTCGTTGTTGGGCA 57.807 45.000 0.00 0.00 0.00 5.36
2602 8711 2.192664 TACATGTCGTTGTTGGGCAT 57.807 45.000 0.00 0.00 0.00 4.40
2603 8712 0.597568 ACATGTCGTTGTTGGGCATG 59.402 50.000 4.95 4.95 41.67 4.06
2605 8714 1.269174 CATGTCGTTGTTGGGCATGAA 59.731 47.619 0.00 0.00 39.21 2.57
2606 8715 0.665835 TGTCGTTGTTGGGCATGAAC 59.334 50.000 0.00 0.00 0.00 3.18
2607 8716 0.665835 GTCGTTGTTGGGCATGAACA 59.334 50.000 0.00 0.00 0.00 3.18
2608 8717 0.665835 TCGTTGTTGGGCATGAACAC 59.334 50.000 0.00 0.00 33.06 3.32
2609 8718 0.383590 CGTTGTTGGGCATGAACACA 59.616 50.000 0.00 0.00 33.06 3.72
2610 8719 1.202348 CGTTGTTGGGCATGAACACAA 60.202 47.619 0.00 0.00 33.06 3.33
2611 8720 2.545532 CGTTGTTGGGCATGAACACAAT 60.546 45.455 0.00 0.00 33.06 2.71
2612 8721 3.465871 GTTGTTGGGCATGAACACAATT 58.534 40.909 0.00 0.00 33.06 2.32
2613 8722 3.383620 TGTTGGGCATGAACACAATTC 57.616 42.857 0.00 0.00 0.00 2.17
2614 8723 2.697229 TGTTGGGCATGAACACAATTCA 59.303 40.909 0.00 0.00 0.00 2.57
2615 8724 3.133542 TGTTGGGCATGAACACAATTCAA 59.866 39.130 0.00 0.00 31.55 2.69
2630 8747 4.574421 ACAATTCAACACACGACTTCATCA 59.426 37.500 0.00 0.00 0.00 3.07
2643 8760 6.143438 CACGACTTCATCAGTTACTTTACGTT 59.857 38.462 0.00 0.00 35.01 3.99
2644 8761 6.143438 ACGACTTCATCAGTTACTTTACGTTG 59.857 38.462 0.00 0.00 35.01 4.10
2646 8763 7.096353 CGACTTCATCAGTTACTTTACGTTGAA 60.096 37.037 0.00 0.00 35.01 2.69
2647 8764 8.603242 ACTTCATCAGTTACTTTACGTTGAAT 57.397 30.769 0.00 0.00 27.32 2.57
2648 8765 9.052759 ACTTCATCAGTTACTTTACGTTGAATT 57.947 29.630 0.00 0.00 27.32 2.17
2724 8841 9.577110 TTCTAATGATGCATCTCAAAAATTGTC 57.423 29.630 26.32 0.00 0.00 3.18
2725 8842 8.741841 TCTAATGATGCATCTCAAAAATTGTCA 58.258 29.630 26.32 4.24 0.00 3.58
2726 8843 9.529325 CTAATGATGCATCTCAAAAATTGTCAT 57.471 29.630 26.32 6.52 0.00 3.06
2728 8845 8.867112 ATGATGCATCTCAAAAATTGTCATAC 57.133 30.769 26.32 0.00 0.00 2.39
2729 8846 7.259882 TGATGCATCTCAAAAATTGTCATACC 58.740 34.615 26.32 0.00 0.00 2.73
2730 8847 6.587206 TGCATCTCAAAAATTGTCATACCA 57.413 33.333 0.00 0.00 0.00 3.25
2731 8848 6.990798 TGCATCTCAAAAATTGTCATACCAA 58.009 32.000 0.00 0.00 0.00 3.67
2732 8849 7.440198 TGCATCTCAAAAATTGTCATACCAAA 58.560 30.769 0.00 0.00 0.00 3.28
2733 8850 8.095792 TGCATCTCAAAAATTGTCATACCAAAT 58.904 29.630 0.00 0.00 0.00 2.32
2734 8851 9.585099 GCATCTCAAAAATTGTCATACCAAATA 57.415 29.630 0.00 0.00 0.00 1.40
2753 8870 9.487790 ACCAAATATTGACATTAAACCAAACAG 57.512 29.630 0.00 0.00 0.00 3.16
2754 8871 9.487790 CCAAATATTGACATTAAACCAAACAGT 57.512 29.630 0.00 0.00 0.00 3.55
2758 8875 7.823745 ATTGACATTAAACCAAACAGTCTCT 57.176 32.000 0.00 0.00 0.00 3.10
2759 8876 6.618287 TGACATTAAACCAAACAGTCTCTG 57.382 37.500 0.00 0.00 37.52 3.35
2760 8877 6.353323 TGACATTAAACCAAACAGTCTCTGA 58.647 36.000 3.70 0.00 35.18 3.27
2761 8878 6.826231 TGACATTAAACCAAACAGTCTCTGAA 59.174 34.615 3.70 0.00 35.18 3.02
2762 8879 7.502226 TGACATTAAACCAAACAGTCTCTGAAT 59.498 33.333 3.70 0.00 35.18 2.57
2763 8880 7.875971 ACATTAAACCAAACAGTCTCTGAATC 58.124 34.615 3.70 0.00 35.18 2.52
2764 8881 7.721399 ACATTAAACCAAACAGTCTCTGAATCT 59.279 33.333 3.70 0.00 35.18 2.40
2765 8882 7.496529 TTAAACCAAACAGTCTCTGAATCTG 57.503 36.000 3.70 7.05 35.18 2.90
2766 8883 3.406764 ACCAAACAGTCTCTGAATCTGC 58.593 45.455 3.70 0.00 35.18 4.26
2767 8884 3.181451 ACCAAACAGTCTCTGAATCTGCA 60.181 43.478 3.70 0.00 35.18 4.41
2768 8885 4.008330 CCAAACAGTCTCTGAATCTGCAT 58.992 43.478 3.70 0.00 35.18 3.96
2769 8886 4.458295 CCAAACAGTCTCTGAATCTGCATT 59.542 41.667 3.70 0.00 35.18 3.56
2770 8887 5.645067 CCAAACAGTCTCTGAATCTGCATTA 59.355 40.000 3.70 0.00 35.18 1.90
2771 8888 6.402983 CCAAACAGTCTCTGAATCTGCATTAC 60.403 42.308 3.70 0.00 35.18 1.89
2772 8889 5.411831 ACAGTCTCTGAATCTGCATTACA 57.588 39.130 3.70 0.00 35.18 2.41
2773 8890 5.174395 ACAGTCTCTGAATCTGCATTACAC 58.826 41.667 3.70 0.00 35.18 2.90
2774 8891 5.173664 CAGTCTCTGAATCTGCATTACACA 58.826 41.667 0.00 0.00 32.44 3.72
2775 8892 5.816258 CAGTCTCTGAATCTGCATTACACAT 59.184 40.000 0.00 0.00 32.44 3.21
2776 8893 5.816258 AGTCTCTGAATCTGCATTACACATG 59.184 40.000 0.00 0.00 0.00 3.21
2777 8894 5.814188 GTCTCTGAATCTGCATTACACATGA 59.186 40.000 0.00 0.00 0.00 3.07
2778 8895 6.018913 GTCTCTGAATCTGCATTACACATGAG 60.019 42.308 0.00 0.00 0.00 2.90
2779 8896 5.121105 TCTGAATCTGCATTACACATGAGG 58.879 41.667 0.00 0.00 0.00 3.86
2780 8897 4.847198 TGAATCTGCATTACACATGAGGT 58.153 39.130 0.00 0.00 0.00 3.85
2781 8898 5.255687 TGAATCTGCATTACACATGAGGTT 58.744 37.500 0.00 0.00 0.00 3.50
2782 8899 5.124297 TGAATCTGCATTACACATGAGGTTG 59.876 40.000 0.00 0.00 0.00 3.77
2783 8900 2.749076 TCTGCATTACACATGAGGTTGC 59.251 45.455 0.00 5.91 0.00 4.17
2784 8901 1.818060 TGCATTACACATGAGGTTGCC 59.182 47.619 0.00 0.00 0.00 4.52
2785 8902 2.094675 GCATTACACATGAGGTTGCCT 58.905 47.619 0.00 0.00 36.03 4.75
2786 8903 2.159338 GCATTACACATGAGGTTGCCTG 60.159 50.000 0.00 0.00 31.76 4.85
2787 8904 2.949177 TTACACATGAGGTTGCCTGT 57.051 45.000 0.00 0.00 31.76 4.00
2788 8905 4.260985 CATTACACATGAGGTTGCCTGTA 58.739 43.478 0.00 0.00 31.76 2.74
2789 8906 2.479566 ACACATGAGGTTGCCTGTAG 57.520 50.000 0.00 0.00 31.76 2.74
2790 8907 1.699634 ACACATGAGGTTGCCTGTAGT 59.300 47.619 0.00 0.00 31.76 2.73
2791 8908 2.079158 CACATGAGGTTGCCTGTAGTG 58.921 52.381 0.00 0.00 31.76 2.74
2792 8909 1.003580 ACATGAGGTTGCCTGTAGTGG 59.996 52.381 0.00 0.00 31.76 4.00
2793 8910 0.620556 ATGAGGTTGCCTGTAGTGGG 59.379 55.000 0.00 0.00 31.76 4.61
2794 8911 0.472925 TGAGGTTGCCTGTAGTGGGA 60.473 55.000 0.00 0.00 31.76 4.37
2795 8912 0.250513 GAGGTTGCCTGTAGTGGGAG 59.749 60.000 0.00 0.00 31.76 4.30
2796 8913 0.473886 AGGTTGCCTGTAGTGGGAGT 60.474 55.000 0.00 0.00 29.57 3.85
2797 8914 1.203262 AGGTTGCCTGTAGTGGGAGTA 60.203 52.381 0.00 0.00 29.57 2.59
2798 8915 1.838077 GGTTGCCTGTAGTGGGAGTAT 59.162 52.381 0.00 0.00 0.00 2.12
2799 8916 2.158943 GGTTGCCTGTAGTGGGAGTATC 60.159 54.545 0.00 0.00 0.00 2.24
2800 8917 2.500098 GTTGCCTGTAGTGGGAGTATCA 59.500 50.000 0.00 0.00 36.25 2.15
2801 8918 3.046283 TGCCTGTAGTGGGAGTATCAT 57.954 47.619 0.00 0.00 36.25 2.45
2802 8919 4.193240 TGCCTGTAGTGGGAGTATCATA 57.807 45.455 0.00 0.00 36.25 2.15
2803 8920 4.152647 TGCCTGTAGTGGGAGTATCATAG 58.847 47.826 0.00 0.00 36.25 2.23
2804 8921 3.056465 GCCTGTAGTGGGAGTATCATAGC 60.056 52.174 0.00 0.00 36.25 2.97
2805 8922 4.411927 CCTGTAGTGGGAGTATCATAGCT 58.588 47.826 0.00 0.00 36.25 3.32
2806 8923 5.571285 CCTGTAGTGGGAGTATCATAGCTA 58.429 45.833 0.00 0.00 36.25 3.32
2807 8924 5.650266 CCTGTAGTGGGAGTATCATAGCTAG 59.350 48.000 0.00 0.00 36.25 3.42
2808 8925 6.202202 TGTAGTGGGAGTATCATAGCTAGT 57.798 41.667 0.00 0.00 36.25 2.57
2809 8926 7.325725 TGTAGTGGGAGTATCATAGCTAGTA 57.674 40.000 0.00 0.00 36.25 1.82
2810 8927 7.929959 TGTAGTGGGAGTATCATAGCTAGTAT 58.070 38.462 0.00 0.00 36.25 2.12
2811 8928 8.047911 TGTAGTGGGAGTATCATAGCTAGTATC 58.952 40.741 0.00 0.00 36.25 2.24
2812 8929 7.033782 AGTGGGAGTATCATAGCTAGTATCA 57.966 40.000 0.00 0.00 36.25 2.15
2813 8930 7.647827 AGTGGGAGTATCATAGCTAGTATCAT 58.352 38.462 0.00 0.00 36.25 2.45
2814 8931 7.559533 AGTGGGAGTATCATAGCTAGTATCATG 59.440 40.741 0.00 0.00 36.25 3.07
2815 8932 6.322456 TGGGAGTATCATAGCTAGTATCATGC 59.678 42.308 0.00 0.00 36.25 4.06
2816 8933 6.322456 GGGAGTATCATAGCTAGTATCATGCA 59.678 42.308 0.00 0.00 36.25 3.96
2817 8934 7.015098 GGGAGTATCATAGCTAGTATCATGCAT 59.985 40.741 0.00 0.00 36.25 3.96
2818 8935 7.866898 GGAGTATCATAGCTAGTATCATGCATG 59.133 40.741 21.07 21.07 36.25 4.06
2819 8936 7.208777 AGTATCATAGCTAGTATCATGCATGC 58.791 38.462 22.25 11.82 0.00 4.06
2820 8937 4.763073 TCATAGCTAGTATCATGCATGCC 58.237 43.478 22.25 11.72 0.00 4.40
2821 8938 4.223477 TCATAGCTAGTATCATGCATGCCA 59.777 41.667 22.25 8.84 0.00 4.92
2822 8939 3.497103 AGCTAGTATCATGCATGCCAA 57.503 42.857 22.25 5.34 0.00 4.52
2823 8940 4.030314 AGCTAGTATCATGCATGCCAAT 57.970 40.909 22.25 12.74 0.00 3.16
2824 8941 4.404640 AGCTAGTATCATGCATGCCAATT 58.595 39.130 22.25 8.61 0.00 2.32
2825 8942 5.563592 AGCTAGTATCATGCATGCCAATTA 58.436 37.500 22.25 3.72 0.00 1.40
2826 8943 5.646793 AGCTAGTATCATGCATGCCAATTAG 59.353 40.000 22.25 17.63 0.00 1.73
2827 8944 5.163683 GCTAGTATCATGCATGCCAATTAGG 60.164 44.000 22.25 8.53 41.84 2.69
2844 8961 3.239861 GGCTATACATGAGGCTGCC 57.760 57.895 11.65 11.65 36.58 4.85
2845 8962 0.322008 GGCTATACATGAGGCTGCCC 60.322 60.000 16.57 7.66 36.58 5.36
2846 8963 0.671781 GCTATACATGAGGCTGCCCG 60.672 60.000 16.57 4.18 35.76 6.13
2847 8964 0.681733 CTATACATGAGGCTGCCCGT 59.318 55.000 16.57 10.30 35.76 5.28
2848 8965 1.893137 CTATACATGAGGCTGCCCGTA 59.107 52.381 16.57 12.20 35.76 4.02
2849 8966 0.681733 ATACATGAGGCTGCCCGTAG 59.318 55.000 16.57 6.15 35.76 3.51
2850 8967 0.686441 TACATGAGGCTGCCCGTAGT 60.686 55.000 16.57 12.01 35.76 2.73
2851 8968 1.522355 CATGAGGCTGCCCGTAGTG 60.522 63.158 16.57 3.95 35.76 2.74
2852 8969 2.735772 ATGAGGCTGCCCGTAGTGG 61.736 63.158 16.57 0.00 35.76 4.00
2864 8981 3.851976 CCGTAGTGGGACTATCATAGC 57.148 52.381 0.00 0.00 32.65 2.97
2865 8982 3.422796 CCGTAGTGGGACTATCATAGCT 58.577 50.000 0.00 0.00 32.65 3.32
2866 8983 4.586884 CCGTAGTGGGACTATCATAGCTA 58.413 47.826 0.00 0.00 32.65 3.32
2867 8984 4.395542 CCGTAGTGGGACTATCATAGCTAC 59.604 50.000 0.00 0.00 32.65 3.58
2868 8985 5.001874 CGTAGTGGGACTATCATAGCTACA 58.998 45.833 0.00 0.00 32.65 2.74
2869 8986 5.648526 CGTAGTGGGACTATCATAGCTACAT 59.351 44.000 0.00 0.00 32.65 2.29
2870 8987 6.151312 CGTAGTGGGACTATCATAGCTACATT 59.849 42.308 0.00 0.00 32.65 2.71
2871 8988 7.309255 CGTAGTGGGACTATCATAGCTACATTT 60.309 40.741 0.00 0.00 32.65 2.32
2872 8989 6.763355 AGTGGGACTATCATAGCTACATTTG 58.237 40.000 0.00 0.00 0.00 2.32
2873 8990 6.327626 AGTGGGACTATCATAGCTACATTTGT 59.672 38.462 0.00 0.00 0.00 2.83
2874 8991 7.509318 AGTGGGACTATCATAGCTACATTTGTA 59.491 37.037 0.00 0.00 0.00 2.41
2875 8992 8.148351 GTGGGACTATCATAGCTACATTTGTAA 58.852 37.037 0.00 0.00 0.00 2.41
2876 8993 8.367911 TGGGACTATCATAGCTACATTTGTAAG 58.632 37.037 0.00 0.00 0.00 2.34
2877 8994 8.368668 GGGACTATCATAGCTACATTTGTAAGT 58.631 37.037 0.00 0.00 0.00 2.24
2878 8995 9.765795 GGACTATCATAGCTACATTTGTAAGTT 57.234 33.333 0.00 0.00 0.00 2.66
2908 9025 7.825331 ATGATGTGCTACTAGTACTATGTGT 57.175 36.000 2.33 0.80 31.77 3.72
2909 9026 7.260558 TGATGTGCTACTAGTACTATGTGTC 57.739 40.000 2.33 2.23 31.77 3.67
2910 9027 6.826741 TGATGTGCTACTAGTACTATGTGTCA 59.173 38.462 2.33 4.40 31.77 3.58
2911 9028 7.502561 TGATGTGCTACTAGTACTATGTGTCAT 59.497 37.037 2.33 5.00 31.77 3.06
2912 9029 7.027778 TGTGCTACTAGTACTATGTGTCATG 57.972 40.000 2.33 0.00 31.77 3.07
2913 9030 5.915758 GTGCTACTAGTACTATGTGTCATGC 59.084 44.000 2.33 5.12 0.00 4.06
2914 9031 5.592688 TGCTACTAGTACTATGTGTCATGCA 59.407 40.000 2.33 7.30 0.00 3.96
2915 9032 6.265422 TGCTACTAGTACTATGTGTCATGCAT 59.735 38.462 2.33 0.00 0.00 3.96
2916 9033 6.584184 GCTACTAGTACTATGTGTCATGCATG 59.416 42.308 21.07 21.07 0.00 4.06
2917 9034 6.715347 ACTAGTACTATGTGTCATGCATGA 57.285 37.500 25.42 25.42 0.00 3.07
2918 9035 7.295322 ACTAGTACTATGTGTCATGCATGAT 57.705 36.000 30.89 18.01 39.30 2.45
2919 9036 8.409358 ACTAGTACTATGTGTCATGCATGATA 57.591 34.615 30.89 25.85 39.30 2.15
2920 9037 8.860088 ACTAGTACTATGTGTCATGCATGATAA 58.140 33.333 30.89 19.84 39.30 1.75
2921 9038 9.866798 CTAGTACTATGTGTCATGCATGATAAT 57.133 33.333 30.89 24.01 39.30 1.28
2963 9080 8.432013 TGATACCATCCTATGATATTATGCACC 58.568 37.037 0.00 0.00 0.00 5.01
2964 9081 6.641161 ACCATCCTATGATATTATGCACCA 57.359 37.500 0.00 0.00 0.00 4.17
2965 9082 7.217028 ACCATCCTATGATATTATGCACCAT 57.783 36.000 0.00 0.00 0.00 3.55
2966 9083 7.058525 ACCATCCTATGATATTATGCACCATG 58.941 38.462 0.00 0.00 0.00 3.66
2967 9084 6.489022 CCATCCTATGATATTATGCACCATGG 59.511 42.308 11.19 11.19 0.00 3.66
2968 9085 6.889595 TCCTATGATATTATGCACCATGGA 57.110 37.500 21.47 0.00 0.00 3.41
2969 9086 6.892485 TCCTATGATATTATGCACCATGGAG 58.108 40.000 21.47 12.70 0.00 3.86
2970 9087 6.060136 CCTATGATATTATGCACCATGGAGG 58.940 44.000 21.47 11.40 45.67 4.30
2984 9101 5.815233 CCATGGAGGTAGAATCATACACT 57.185 43.478 5.56 0.00 0.00 3.55
2985 9102 5.545588 CCATGGAGGTAGAATCATACACTG 58.454 45.833 5.56 0.00 0.00 3.66
2986 9103 5.512060 CCATGGAGGTAGAATCATACACTGG 60.512 48.000 5.56 0.00 0.00 4.00
2987 9104 4.620723 TGGAGGTAGAATCATACACTGGT 58.379 43.478 0.00 0.00 0.00 4.00
2988 9105 5.773091 TGGAGGTAGAATCATACACTGGTA 58.227 41.667 0.00 0.00 0.00 3.25
2989 9106 6.382087 TGGAGGTAGAATCATACACTGGTAT 58.618 40.000 0.00 0.00 40.86 2.73
2990 9107 6.493802 TGGAGGTAGAATCATACACTGGTATC 59.506 42.308 0.00 0.00 38.14 2.24
2991 9108 6.493802 GGAGGTAGAATCATACACTGGTATCA 59.506 42.308 0.00 0.00 38.14 2.15
2992 9109 7.179338 GGAGGTAGAATCATACACTGGTATCAT 59.821 40.741 0.00 0.00 38.14 2.45
2993 9110 9.244292 GAGGTAGAATCATACACTGGTATCATA 57.756 37.037 0.00 0.00 38.14 2.15
2994 9111 9.775539 AGGTAGAATCATACACTGGTATCATAT 57.224 33.333 0.00 0.00 38.14 1.78
3028 9145 9.175312 ACTAGTATATGATACTCCACATTACGG 57.825 37.037 0.00 0.00 0.00 4.02
3029 9146 6.864342 AGTATATGATACTCCACATTACGGC 58.136 40.000 0.00 0.00 0.00 5.68
3030 9147 2.902705 TGATACTCCACATTACGGCC 57.097 50.000 0.00 0.00 0.00 6.13
3031 9148 2.112190 TGATACTCCACATTACGGCCA 58.888 47.619 2.24 0.00 0.00 5.36
3032 9149 2.102420 TGATACTCCACATTACGGCCAG 59.898 50.000 2.24 0.00 0.00 4.85
3033 9150 0.177141 TACTCCACATTACGGCCAGC 59.823 55.000 2.24 0.00 0.00 4.85
3034 9151 2.125310 TCCACATTACGGCCAGCG 60.125 61.111 2.24 0.00 0.00 5.18
3035 9152 2.435938 CCACATTACGGCCAGCGT 60.436 61.111 2.24 0.00 0.00 5.07
3036 9153 2.749865 CCACATTACGGCCAGCGTG 61.750 63.158 2.24 1.96 0.00 5.34
3037 9154 1.739929 CACATTACGGCCAGCGTGA 60.740 57.895 2.24 0.00 0.00 4.35
3038 9155 1.447838 ACATTACGGCCAGCGTGAG 60.448 57.895 2.24 0.00 0.00 3.51
3039 9156 2.173669 CATTACGGCCAGCGTGAGG 61.174 63.158 2.24 0.00 0.00 3.86
3047 9164 4.079850 CAGCGTGAGGCCTGCTCT 62.080 66.667 12.00 0.00 45.17 4.09
3048 9165 3.768922 AGCGTGAGGCCTGCTCTC 61.769 66.667 12.00 0.00 45.17 3.20
3049 9166 4.074526 GCGTGAGGCCTGCTCTCA 62.075 66.667 12.00 0.00 38.75 3.27
3050 9167 2.659016 CGTGAGGCCTGCTCTCAA 59.341 61.111 12.00 0.00 42.13 3.02
3051 9168 1.220206 CGTGAGGCCTGCTCTCAAT 59.780 57.895 12.00 0.00 42.13 2.57
3052 9169 1.088340 CGTGAGGCCTGCTCTCAATG 61.088 60.000 12.00 0.00 42.13 2.82
3053 9170 0.251354 GTGAGGCCTGCTCTCAATGA 59.749 55.000 12.00 0.00 42.13 2.57
3054 9171 0.251354 TGAGGCCTGCTCTCAATGAC 59.749 55.000 12.00 0.00 38.20 3.06
3055 9172 0.251354 GAGGCCTGCTCTCAATGACA 59.749 55.000 12.00 0.00 0.00 3.58
3056 9173 0.917533 AGGCCTGCTCTCAATGACAT 59.082 50.000 3.11 0.00 0.00 3.06
3057 9174 1.284198 AGGCCTGCTCTCAATGACATT 59.716 47.619 3.11 0.00 0.00 2.71
3058 9175 2.097825 GGCCTGCTCTCAATGACATTT 58.902 47.619 0.00 0.00 0.00 2.32
3059 9176 2.494870 GGCCTGCTCTCAATGACATTTT 59.505 45.455 0.00 0.00 0.00 1.82
3060 9177 3.508762 GCCTGCTCTCAATGACATTTTG 58.491 45.455 0.00 0.00 0.00 2.44
3061 9178 3.192001 GCCTGCTCTCAATGACATTTTGA 59.808 43.478 0.00 0.00 0.00 2.69
3062 9179 4.142227 GCCTGCTCTCAATGACATTTTGAT 60.142 41.667 0.00 0.00 32.94 2.57
3063 9180 5.623824 GCCTGCTCTCAATGACATTTTGATT 60.624 40.000 0.00 0.00 32.94 2.57
3064 9181 6.395629 CCTGCTCTCAATGACATTTTGATTT 58.604 36.000 0.00 0.00 32.94 2.17
3065 9182 7.541162 CCTGCTCTCAATGACATTTTGATTTA 58.459 34.615 0.00 0.00 32.94 1.40
3066 9183 7.487189 CCTGCTCTCAATGACATTTTGATTTAC 59.513 37.037 0.00 0.00 32.94 2.01
3067 9184 7.315142 TGCTCTCAATGACATTTTGATTTACC 58.685 34.615 0.00 0.00 32.94 2.85
3068 9185 7.177216 TGCTCTCAATGACATTTTGATTTACCT 59.823 33.333 0.00 0.00 32.94 3.08
3069 9186 8.031277 GCTCTCAATGACATTTTGATTTACCTT 58.969 33.333 0.00 0.00 32.94 3.50
3070 9187 9.918630 CTCTCAATGACATTTTGATTTACCTTT 57.081 29.630 0.00 0.00 32.94 3.11
3079 9196 9.840427 ACATTTTGATTTACCTTTAATCACTCG 57.160 29.630 0.00 0.00 40.62 4.18
3080 9197 9.840427 CATTTTGATTTACCTTTAATCACTCGT 57.160 29.630 0.00 0.00 40.62 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.583856 CGTGTAGCATGCTAGACAACG 59.416 52.381 38.60 31.55 41.22 4.10
49 50 3.703001 ACTTTTCACCATCACCGAGAT 57.297 42.857 0.00 0.00 37.48 2.75
77 78 5.623824 GCTCAATTTTGTCTCATCATGGCTT 60.624 40.000 0.00 0.00 0.00 4.35
107 108 9.554395 TTGTCAGTATTCTTCAATGTTTACAGA 57.446 29.630 0.00 0.00 0.00 3.41
137 358 1.620323 GATTTTTGCACTTGAGGCCCT 59.380 47.619 0.00 0.00 0.00 5.19
290 2827 2.483877 TGACATGCTTGCTAAAGGAACG 59.516 45.455 0.00 0.00 37.29 3.95
412 2957 7.849026 CGATAATGTTAAAAATCCGACGTCAAT 59.151 33.333 17.16 5.45 0.00 2.57
413 2958 7.063191 TCGATAATGTTAAAAATCCGACGTCAA 59.937 33.333 17.16 2.91 0.00 3.18
483 3028 0.105224 CCACGTACCACAAGTCCACA 59.895 55.000 0.00 0.00 0.00 4.17
484 3029 1.226030 GCCACGTACCACAAGTCCAC 61.226 60.000 0.00 0.00 0.00 4.02
485 3030 1.070105 GCCACGTACCACAAGTCCA 59.930 57.895 0.00 0.00 0.00 4.02
486 3031 0.669625 GAGCCACGTACCACAAGTCC 60.670 60.000 0.00 0.00 0.00 3.85
487 3032 0.032952 TGAGCCACGTACCACAAGTC 59.967 55.000 0.00 0.00 0.00 3.01
488 3033 0.033504 CTGAGCCACGTACCACAAGT 59.966 55.000 0.00 0.00 0.00 3.16
489 3034 0.033504 ACTGAGCCACGTACCACAAG 59.966 55.000 0.00 0.00 0.00 3.16
490 3035 0.466543 AACTGAGCCACGTACCACAA 59.533 50.000 0.00 0.00 0.00 3.33
541 3086 4.267928 CGGATCGAGCCTTAAAAACAGTAG 59.732 45.833 19.08 0.00 0.00 2.57
768 3315 7.971168 TCAATCAACAACACGACAGTAAATTTT 59.029 29.630 0.00 0.00 0.00 1.82
867 3416 1.278413 GGAGGTGACCCCTAACAAGAC 59.722 57.143 0.00 0.00 46.51 3.01
958 3508 2.863137 GCTCTGAACTGATTCGTGGATC 59.137 50.000 0.00 0.00 37.69 3.36
960 3510 1.895798 AGCTCTGAACTGATTCGTGGA 59.104 47.619 0.00 0.00 37.69 4.02
961 3511 2.266554 GAGCTCTGAACTGATTCGTGG 58.733 52.381 6.43 0.00 37.69 4.94
962 3512 2.922387 CTGAGCTCTGAACTGATTCGTG 59.078 50.000 16.19 0.00 37.69 4.35
963 3513 2.822561 TCTGAGCTCTGAACTGATTCGT 59.177 45.455 19.80 0.00 37.69 3.85
965 3515 3.618150 GCTTCTGAGCTCTGAACTGATTC 59.382 47.826 26.66 11.46 45.65 2.52
967 3517 3.249986 GCTTCTGAGCTCTGAACTGAT 57.750 47.619 26.66 0.00 45.65 2.90
968 3518 2.739885 GCTTCTGAGCTCTGAACTGA 57.260 50.000 26.66 11.27 45.65 3.41
1168 3729 3.246112 CACCCACTCCCGGTTGGA 61.246 66.667 14.18 0.00 42.41 3.53
1406 3967 1.500108 CAAGATCGAGCTGCAGGATC 58.500 55.000 17.12 17.98 37.44 3.36
1407 3968 0.532417 GCAAGATCGAGCTGCAGGAT 60.532 55.000 17.12 9.81 0.00 3.24
1433 3994 0.179121 TAATGGCGAACGAGCGATGT 60.179 50.000 5.91 0.00 35.75 3.06
1499 4064 5.003804 ACTCCTTGATCTGCACGTTAATTT 58.996 37.500 0.00 0.00 0.00 1.82
1530 4158 2.166459 CTCGCAGAACAGGATCACCTTA 59.834 50.000 0.00 0.00 39.98 2.69
2028 8095 0.037326 GGTTGTCGAGGATGAGCACA 60.037 55.000 0.00 0.00 0.00 4.57
2145 8216 9.832445 CCATCCTCAAGCTTAATTAACTAACTA 57.168 33.333 0.00 0.00 0.00 2.24
2146 8217 8.548877 TCCATCCTCAAGCTTAATTAACTAACT 58.451 33.333 0.00 0.00 0.00 2.24
2168 8239 3.914426 AGTTAATCAAGCTCGGTCCAT 57.086 42.857 0.00 0.00 0.00 3.41
2214 8285 3.201290 AGAAGAGCCAAATGTAGCATCG 58.799 45.455 0.00 0.00 0.00 3.84
2215 8286 7.969536 TTATAGAAGAGCCAAATGTAGCATC 57.030 36.000 0.00 0.00 0.00 3.91
2221 8292 7.995488 ACAGCTTATTATAGAAGAGCCAAATGT 59.005 33.333 5.04 1.67 33.96 2.71
2251 8325 8.477256 AGCCATTTTACCGTAGTAACTAACATA 58.523 33.333 0.00 0.00 38.19 2.29
2252 8326 7.333323 AGCCATTTTACCGTAGTAACTAACAT 58.667 34.615 0.00 0.00 38.19 2.71
2253 8327 6.700352 AGCCATTTTACCGTAGTAACTAACA 58.300 36.000 0.00 0.00 38.19 2.41
2254 8328 7.463251 CGAAGCCATTTTACCGTAGTAACTAAC 60.463 40.741 0.00 0.00 38.19 2.34
2255 8329 6.531240 CGAAGCCATTTTACCGTAGTAACTAA 59.469 38.462 0.00 0.00 38.19 2.24
2256 8330 6.035843 CGAAGCCATTTTACCGTAGTAACTA 58.964 40.000 0.00 0.00 38.19 2.24
2286 8361 1.142465 ACCCAGCCTCTGCATCATAAG 59.858 52.381 0.00 0.00 41.13 1.73
2287 8362 1.216064 ACCCAGCCTCTGCATCATAA 58.784 50.000 0.00 0.00 41.13 1.90
2288 8363 1.694150 GTACCCAGCCTCTGCATCATA 59.306 52.381 0.00 0.00 41.13 2.15
2289 8364 0.471617 GTACCCAGCCTCTGCATCAT 59.528 55.000 0.00 0.00 41.13 2.45
2311 8386 5.277442 CGTAGTGGCTTTTCTTCCGTAAAAA 60.277 40.000 0.00 0.00 0.00 1.94
2312 8387 4.211794 CGTAGTGGCTTTTCTTCCGTAAAA 59.788 41.667 0.00 0.00 0.00 1.52
2316 8391 1.607251 CCGTAGTGGCTTTTCTTCCGT 60.607 52.381 0.00 0.00 0.00 4.69
2318 8393 2.180432 ACCGTAGTGGCTTTTCTTCC 57.820 50.000 0.00 0.00 43.94 3.46
2322 8397 7.368480 TCTTATTTTACCGTAGTGGCTTTTC 57.632 36.000 0.00 0.00 43.94 2.29
2327 8402 4.270325 CAGCTCTTATTTTACCGTAGTGGC 59.730 45.833 0.00 0.00 43.94 5.01
2328 8403 5.657474 TCAGCTCTTATTTTACCGTAGTGG 58.343 41.667 0.00 0.00 46.41 4.00
2329 8404 6.255887 CCTTCAGCTCTTATTTTACCGTAGTG 59.744 42.308 0.00 0.00 0.00 2.74
2393 8471 2.236644 GAGAAACTACCTCACCCTTCCC 59.763 54.545 0.00 0.00 0.00 3.97
2394 8472 2.236644 GGAGAAACTACCTCACCCTTCC 59.763 54.545 0.00 0.00 32.48 3.46
2397 8475 1.437547 AGGGAGAAACTACCTCACCCT 59.562 52.381 0.00 0.00 41.95 4.34
2427 8505 8.900781 TGGATGCAAAACTACTACTAGTACTAG 58.099 37.037 25.30 25.30 39.04 2.57
2428 8506 8.812513 TGGATGCAAAACTACTACTAGTACTA 57.187 34.615 1.89 1.89 32.46 1.82
2429 8507 7.713734 TGGATGCAAAACTACTACTAGTACT 57.286 36.000 0.00 0.00 32.46 2.73
2430 8508 8.195436 TGATGGATGCAAAACTACTACTAGTAC 58.805 37.037 0.00 0.00 32.46 2.73
2431 8509 8.301252 TGATGGATGCAAAACTACTACTAGTA 57.699 34.615 1.89 1.89 32.46 1.82
2432 8510 7.182817 TGATGGATGCAAAACTACTACTAGT 57.817 36.000 0.00 0.00 34.38 2.57
2433 8511 7.928167 TGATGATGGATGCAAAACTACTACTAG 59.072 37.037 0.00 0.00 0.00 2.57
2434 8512 7.791029 TGATGATGGATGCAAAACTACTACTA 58.209 34.615 0.00 0.00 0.00 1.82
2435 8513 6.653020 TGATGATGGATGCAAAACTACTACT 58.347 36.000 0.00 0.00 0.00 2.57
2436 8514 6.925610 TGATGATGGATGCAAAACTACTAC 57.074 37.500 0.00 0.00 0.00 2.73
2470 8579 4.552166 GCCTTACATGTCGTAATGCATT 57.448 40.909 17.56 17.56 45.70 3.56
2500 8609 8.307483 ACCCATGATTATTTAGTATCACTCGAG 58.693 37.037 11.84 11.84 33.90 4.04
2511 8620 5.336213 GCTGCATCCACCCATGATTATTTAG 60.336 44.000 0.00 0.00 0.00 1.85
2512 8621 4.523943 GCTGCATCCACCCATGATTATTTA 59.476 41.667 0.00 0.00 0.00 1.40
2513 8622 3.322828 GCTGCATCCACCCATGATTATTT 59.677 43.478 0.00 0.00 0.00 1.40
2514 8623 2.895404 GCTGCATCCACCCATGATTATT 59.105 45.455 0.00 0.00 0.00 1.40
2516 8625 1.214923 TGCTGCATCCACCCATGATTA 59.785 47.619 0.00 0.00 0.00 1.75
2517 8626 0.032912 TGCTGCATCCACCCATGATT 60.033 50.000 0.00 0.00 0.00 2.57
2519 8628 1.077285 CTGCTGCATCCACCCATGA 60.077 57.895 1.31 0.00 0.00 3.07
2520 8629 0.107066 TACTGCTGCATCCACCCATG 60.107 55.000 1.31 0.00 0.00 3.66
2521 8630 0.848735 ATACTGCTGCATCCACCCAT 59.151 50.000 1.31 0.00 0.00 4.00
2522 8631 0.625316 AATACTGCTGCATCCACCCA 59.375 50.000 1.31 0.00 0.00 4.51
2523 8632 2.638480 TAATACTGCTGCATCCACCC 57.362 50.000 1.31 0.00 0.00 4.61
2524 8633 2.227388 GCATAATACTGCTGCATCCACC 59.773 50.000 1.31 0.00 39.12 4.61
2525 8634 2.880268 TGCATAATACTGCTGCATCCAC 59.120 45.455 1.31 0.00 40.75 4.02
2596 8705 2.697229 TGTTGAATTGTGTTCATGCCCA 59.303 40.909 0.00 0.00 0.00 5.36
2598 8707 3.490526 GTGTGTTGAATTGTGTTCATGCC 59.509 43.478 0.00 0.00 0.00 4.40
2599 8708 3.180189 CGTGTGTTGAATTGTGTTCATGC 59.820 43.478 0.00 0.00 0.00 4.06
2600 8709 4.437495 GTCGTGTGTTGAATTGTGTTCATG 59.563 41.667 0.00 0.00 0.00 3.07
2601 8710 4.335315 AGTCGTGTGTTGAATTGTGTTCAT 59.665 37.500 0.00 0.00 0.00 2.57
2602 8711 3.687212 AGTCGTGTGTTGAATTGTGTTCA 59.313 39.130 0.00 0.00 0.00 3.18
2603 8712 4.273005 AGTCGTGTGTTGAATTGTGTTC 57.727 40.909 0.00 0.00 0.00 3.18
2605 8714 3.687212 TGAAGTCGTGTGTTGAATTGTGT 59.313 39.130 0.00 0.00 0.00 3.72
2606 8715 4.271590 TGAAGTCGTGTGTTGAATTGTG 57.728 40.909 0.00 0.00 0.00 3.33
2607 8716 4.574421 TGATGAAGTCGTGTGTTGAATTGT 59.426 37.500 0.00 0.00 0.00 2.71
2608 8717 5.094429 TGATGAAGTCGTGTGTTGAATTG 57.906 39.130 0.00 0.00 0.00 2.32
2609 8718 4.816385 ACTGATGAAGTCGTGTGTTGAATT 59.184 37.500 0.00 0.00 31.64 2.17
2610 8719 4.380531 ACTGATGAAGTCGTGTGTTGAAT 58.619 39.130 0.00 0.00 31.64 2.57
2611 8720 3.792401 ACTGATGAAGTCGTGTGTTGAA 58.208 40.909 0.00 0.00 31.64 2.69
2612 8721 3.452755 ACTGATGAAGTCGTGTGTTGA 57.547 42.857 0.00 0.00 31.64 3.18
2613 8722 4.745125 AGTAACTGATGAAGTCGTGTGTTG 59.255 41.667 0.00 0.00 38.56 3.33
2614 8723 4.945246 AGTAACTGATGAAGTCGTGTGTT 58.055 39.130 0.00 0.00 38.56 3.32
2615 8724 4.585955 AGTAACTGATGAAGTCGTGTGT 57.414 40.909 0.00 0.00 38.56 3.72
2698 8815 9.577110 GACAATTTTTGAGATGCATCATTAGAA 57.423 29.630 27.81 16.23 0.00 2.10
2699 8816 8.741841 TGACAATTTTTGAGATGCATCATTAGA 58.258 29.630 27.81 9.87 0.00 2.10
2700 8817 8.920509 TGACAATTTTTGAGATGCATCATTAG 57.079 30.769 27.81 13.51 0.00 1.73
2702 8819 9.309516 GTATGACAATTTTTGAGATGCATCATT 57.690 29.630 27.81 14.52 0.00 2.57
2703 8820 7.924412 GGTATGACAATTTTTGAGATGCATCAT 59.076 33.333 27.81 13.31 0.00 2.45
2704 8821 7.093858 TGGTATGACAATTTTTGAGATGCATCA 60.094 33.333 27.81 7.77 0.00 3.07
2705 8822 7.259882 TGGTATGACAATTTTTGAGATGCATC 58.740 34.615 19.37 19.37 0.00 3.91
2706 8823 7.172868 TGGTATGACAATTTTTGAGATGCAT 57.827 32.000 0.00 0.00 0.00 3.96
2707 8824 6.587206 TGGTATGACAATTTTTGAGATGCA 57.413 33.333 0.00 0.00 0.00 3.96
2708 8825 7.887996 TTTGGTATGACAATTTTTGAGATGC 57.112 32.000 0.00 0.00 0.00 3.91
2727 8844 9.487790 CTGTTTGGTTTAATGTCAATATTTGGT 57.512 29.630 0.00 0.00 0.00 3.67
2728 8845 9.487790 ACTGTTTGGTTTAATGTCAATATTTGG 57.512 29.630 0.00 0.00 0.00 3.28
2732 8849 9.520515 AGAGACTGTTTGGTTTAATGTCAATAT 57.479 29.630 0.00 0.00 0.00 1.28
2733 8850 8.783093 CAGAGACTGTTTGGTTTAATGTCAATA 58.217 33.333 0.00 0.00 0.00 1.90
2734 8851 7.502226 TCAGAGACTGTTTGGTTTAATGTCAAT 59.498 33.333 0.00 0.00 32.61 2.57
2735 8852 6.826231 TCAGAGACTGTTTGGTTTAATGTCAA 59.174 34.615 0.00 0.00 32.61 3.18
2736 8853 6.353323 TCAGAGACTGTTTGGTTTAATGTCA 58.647 36.000 0.00 0.00 32.61 3.58
2737 8854 6.861065 TCAGAGACTGTTTGGTTTAATGTC 57.139 37.500 0.00 0.00 32.61 3.06
2738 8855 7.721399 AGATTCAGAGACTGTTTGGTTTAATGT 59.279 33.333 0.00 0.00 32.61 2.71
2739 8856 8.019669 CAGATTCAGAGACTGTTTGGTTTAATG 58.980 37.037 0.00 0.00 32.61 1.90
2740 8857 7.308830 GCAGATTCAGAGACTGTTTGGTTTAAT 60.309 37.037 0.00 0.00 34.60 1.40
2741 8858 6.017109 GCAGATTCAGAGACTGTTTGGTTTAA 60.017 38.462 0.00 0.00 34.60 1.52
2742 8859 5.470098 GCAGATTCAGAGACTGTTTGGTTTA 59.530 40.000 0.00 0.00 34.60 2.01
2743 8860 4.276926 GCAGATTCAGAGACTGTTTGGTTT 59.723 41.667 0.00 0.00 34.60 3.27
2744 8861 3.817647 GCAGATTCAGAGACTGTTTGGTT 59.182 43.478 0.00 0.00 34.60 3.67
2745 8862 3.181451 TGCAGATTCAGAGACTGTTTGGT 60.181 43.478 0.00 0.00 34.60 3.67
2746 8863 3.405831 TGCAGATTCAGAGACTGTTTGG 58.594 45.455 0.00 0.00 34.60 3.28
2747 8864 5.624344 AATGCAGATTCAGAGACTGTTTG 57.376 39.130 0.00 0.00 34.60 2.93
2748 8865 6.148480 GTGTAATGCAGATTCAGAGACTGTTT 59.852 38.462 0.00 0.00 34.60 2.83
2749 8866 5.641209 GTGTAATGCAGATTCAGAGACTGTT 59.359 40.000 0.00 0.00 34.60 3.16
2750 8867 5.174395 GTGTAATGCAGATTCAGAGACTGT 58.826 41.667 0.00 0.00 34.60 3.55
2751 8868 5.173664 TGTGTAATGCAGATTCAGAGACTG 58.826 41.667 0.00 0.00 35.14 3.51
2752 8869 5.411831 TGTGTAATGCAGATTCAGAGACT 57.588 39.130 0.00 0.00 0.00 3.24
2753 8870 5.814188 TCATGTGTAATGCAGATTCAGAGAC 59.186 40.000 0.00 0.00 0.00 3.36
2754 8871 5.981174 TCATGTGTAATGCAGATTCAGAGA 58.019 37.500 0.00 0.00 0.00 3.10
2755 8872 5.236695 CCTCATGTGTAATGCAGATTCAGAG 59.763 44.000 0.00 0.00 0.00 3.35
2756 8873 5.121105 CCTCATGTGTAATGCAGATTCAGA 58.879 41.667 0.00 0.00 0.00 3.27
2757 8874 4.880120 ACCTCATGTGTAATGCAGATTCAG 59.120 41.667 0.00 0.00 0.00 3.02
2758 8875 4.847198 ACCTCATGTGTAATGCAGATTCA 58.153 39.130 0.00 0.00 0.00 2.57
2759 8876 5.575957 CAACCTCATGTGTAATGCAGATTC 58.424 41.667 0.00 0.00 0.00 2.52
2760 8877 4.142315 GCAACCTCATGTGTAATGCAGATT 60.142 41.667 0.00 0.00 32.80 2.40
2761 8878 3.379372 GCAACCTCATGTGTAATGCAGAT 59.621 43.478 0.00 0.00 32.80 2.90
2762 8879 2.749076 GCAACCTCATGTGTAATGCAGA 59.251 45.455 0.00 0.00 32.80 4.26
2763 8880 2.159338 GGCAACCTCATGTGTAATGCAG 60.159 50.000 14.49 0.00 34.14 4.41
2764 8881 1.818060 GGCAACCTCATGTGTAATGCA 59.182 47.619 14.49 0.00 34.14 3.96
2765 8882 2.094675 AGGCAACCTCATGTGTAATGC 58.905 47.619 0.00 0.66 37.17 3.56
2766 8883 3.084039 ACAGGCAACCTCATGTGTAATG 58.916 45.455 0.00 0.00 37.17 1.90
2767 8884 3.439857 ACAGGCAACCTCATGTGTAAT 57.560 42.857 0.00 0.00 37.17 1.89
2768 8885 2.949177 ACAGGCAACCTCATGTGTAA 57.051 45.000 0.00 0.00 37.17 2.41
2769 8886 2.903784 ACTACAGGCAACCTCATGTGTA 59.096 45.455 0.00 0.00 37.17 2.90
2770 8887 1.699634 ACTACAGGCAACCTCATGTGT 59.300 47.619 0.00 0.00 37.17 3.72
2771 8888 2.079158 CACTACAGGCAACCTCATGTG 58.921 52.381 0.00 0.00 37.17 3.21
2772 8889 1.003580 CCACTACAGGCAACCTCATGT 59.996 52.381 0.00 0.00 37.17 3.21
2773 8890 1.679944 CCCACTACAGGCAACCTCATG 60.680 57.143 0.00 0.00 37.17 3.07
2774 8891 0.620556 CCCACTACAGGCAACCTCAT 59.379 55.000 0.00 0.00 37.17 2.90
2775 8892 0.472925 TCCCACTACAGGCAACCTCA 60.473 55.000 0.00 0.00 37.17 3.86
2776 8893 0.250513 CTCCCACTACAGGCAACCTC 59.749 60.000 0.00 0.00 37.17 3.85
2777 8894 0.473886 ACTCCCACTACAGGCAACCT 60.474 55.000 0.00 0.00 37.17 3.50
2778 8895 1.272807 TACTCCCACTACAGGCAACC 58.727 55.000 0.00 0.00 37.17 3.77
2779 8896 2.500098 TGATACTCCCACTACAGGCAAC 59.500 50.000 0.00 0.00 0.00 4.17
2780 8897 2.827755 TGATACTCCCACTACAGGCAA 58.172 47.619 0.00 0.00 0.00 4.52
2781 8898 2.543037 TGATACTCCCACTACAGGCA 57.457 50.000 0.00 0.00 0.00 4.75
2782 8899 3.056465 GCTATGATACTCCCACTACAGGC 60.056 52.174 0.00 0.00 0.00 4.85
2783 8900 4.411927 AGCTATGATACTCCCACTACAGG 58.588 47.826 0.00 0.00 0.00 4.00
2784 8901 6.242396 ACTAGCTATGATACTCCCACTACAG 58.758 44.000 0.00 0.00 0.00 2.74
2785 8902 6.202202 ACTAGCTATGATACTCCCACTACA 57.798 41.667 0.00 0.00 0.00 2.74
2786 8903 8.047911 TGATACTAGCTATGATACTCCCACTAC 58.952 40.741 0.00 0.00 0.00 2.73
2787 8904 8.159229 TGATACTAGCTATGATACTCCCACTA 57.841 38.462 0.00 0.00 0.00 2.74
2788 8905 7.033782 TGATACTAGCTATGATACTCCCACT 57.966 40.000 0.00 0.00 0.00 4.00
2789 8906 7.683222 GCATGATACTAGCTATGATACTCCCAC 60.683 44.444 0.00 0.00 0.00 4.61
2790 8907 6.322456 GCATGATACTAGCTATGATACTCCCA 59.678 42.308 0.00 0.00 0.00 4.37
2791 8908 6.322456 TGCATGATACTAGCTATGATACTCCC 59.678 42.308 0.00 0.00 0.00 4.30
2792 8909 7.340122 TGCATGATACTAGCTATGATACTCC 57.660 40.000 0.00 0.00 0.00 3.85
2793 8910 7.381948 GCATGCATGATACTAGCTATGATACTC 59.618 40.741 30.64 1.38 0.00 2.59
2794 8911 7.208777 GCATGCATGATACTAGCTATGATACT 58.791 38.462 30.64 0.00 0.00 2.12
2795 8912 6.423302 GGCATGCATGATACTAGCTATGATAC 59.577 42.308 30.64 5.71 0.00 2.24
2796 8913 6.098695 TGGCATGCATGATACTAGCTATGATA 59.901 38.462 30.64 0.00 0.00 2.15
2797 8914 5.104652 TGGCATGCATGATACTAGCTATGAT 60.105 40.000 30.64 0.00 0.00 2.45
2798 8915 4.223477 TGGCATGCATGATACTAGCTATGA 59.777 41.667 30.64 0.00 0.00 2.15
2799 8916 4.510571 TGGCATGCATGATACTAGCTATG 58.489 43.478 30.64 0.23 0.00 2.23
2800 8917 4.831674 TGGCATGCATGATACTAGCTAT 57.168 40.909 30.64 0.00 0.00 2.97
2801 8918 4.622260 TTGGCATGCATGATACTAGCTA 57.378 40.909 30.64 7.90 0.00 3.32
2802 8919 3.497103 TTGGCATGCATGATACTAGCT 57.503 42.857 30.64 0.00 0.00 3.32
2803 8920 4.778534 AATTGGCATGCATGATACTAGC 57.221 40.909 30.64 12.56 0.00 3.42
2804 8921 6.432607 CCTAATTGGCATGCATGATACTAG 57.567 41.667 30.64 19.56 0.00 2.57
2819 8936 4.940046 CAGCCTCATGTATAGCCTAATTGG 59.060 45.833 0.00 0.00 39.35 3.16
2820 8937 4.394300 GCAGCCTCATGTATAGCCTAATTG 59.606 45.833 0.00 0.00 0.00 2.32
2821 8938 4.566488 GGCAGCCTCATGTATAGCCTAATT 60.566 45.833 3.29 0.00 37.67 1.40
2822 8939 3.054802 GGCAGCCTCATGTATAGCCTAAT 60.055 47.826 3.29 0.00 37.67 1.73
2823 8940 2.303022 GGCAGCCTCATGTATAGCCTAA 59.697 50.000 3.29 0.00 37.67 2.69
2824 8941 1.902508 GGCAGCCTCATGTATAGCCTA 59.097 52.381 3.29 0.00 37.67 3.93
2825 8942 0.689623 GGCAGCCTCATGTATAGCCT 59.310 55.000 3.29 0.00 37.67 4.58
2826 8943 0.322008 GGGCAGCCTCATGTATAGCC 60.322 60.000 12.43 9.39 39.86 3.93
2827 8944 0.671781 CGGGCAGCCTCATGTATAGC 60.672 60.000 12.43 0.00 0.00 2.97
2828 8945 0.681733 ACGGGCAGCCTCATGTATAG 59.318 55.000 12.43 0.00 0.00 1.31
2829 8946 1.893137 CTACGGGCAGCCTCATGTATA 59.107 52.381 12.43 0.00 0.00 1.47
2830 8947 0.681733 CTACGGGCAGCCTCATGTAT 59.318 55.000 12.43 0.00 0.00 2.29
2831 8948 0.686441 ACTACGGGCAGCCTCATGTA 60.686 55.000 12.43 8.57 0.00 2.29
2832 8949 1.990060 ACTACGGGCAGCCTCATGT 60.990 57.895 12.43 7.83 0.00 3.21
2833 8950 1.522355 CACTACGGGCAGCCTCATG 60.522 63.158 12.43 1.54 0.00 3.07
2834 8951 2.735772 CCACTACGGGCAGCCTCAT 61.736 63.158 12.43 0.00 0.00 2.90
2835 8952 3.390521 CCACTACGGGCAGCCTCA 61.391 66.667 12.43 0.00 0.00 3.86
2844 8961 3.422796 AGCTATGATAGTCCCACTACGG 58.577 50.000 0.92 0.00 32.84 4.02
2845 8962 5.001874 TGTAGCTATGATAGTCCCACTACG 58.998 45.833 0.00 0.00 32.84 3.51
2846 8963 7.469537 AATGTAGCTATGATAGTCCCACTAC 57.530 40.000 0.00 4.68 32.84 2.73
2847 8964 7.509318 ACAAATGTAGCTATGATAGTCCCACTA 59.491 37.037 0.00 0.00 34.82 2.74
2848 8965 6.327626 ACAAATGTAGCTATGATAGTCCCACT 59.672 38.462 0.00 0.00 0.00 4.00
2849 8966 6.525629 ACAAATGTAGCTATGATAGTCCCAC 58.474 40.000 0.00 0.00 0.00 4.61
2850 8967 6.747414 ACAAATGTAGCTATGATAGTCCCA 57.253 37.500 0.00 0.00 0.00 4.37
2851 8968 8.368668 ACTTACAAATGTAGCTATGATAGTCCC 58.631 37.037 0.00 0.00 0.00 4.46
2852 8969 9.765795 AACTTACAAATGTAGCTATGATAGTCC 57.234 33.333 0.00 0.00 0.00 3.85
2882 8999 8.696374 ACACATAGTACTAGTAGCACATCATTT 58.304 33.333 8.85 0.00 0.00 2.32
2883 9000 8.239038 ACACATAGTACTAGTAGCACATCATT 57.761 34.615 8.85 0.00 0.00 2.57
2884 9001 7.502561 TGACACATAGTACTAGTAGCACATCAT 59.497 37.037 8.85 0.00 0.00 2.45
2885 9002 6.826741 TGACACATAGTACTAGTAGCACATCA 59.173 38.462 8.85 0.00 0.00 3.07
2886 9003 7.260558 TGACACATAGTACTAGTAGCACATC 57.739 40.000 8.85 0.00 0.00 3.06
2887 9004 7.652727 CATGACACATAGTACTAGTAGCACAT 58.347 38.462 8.85 7.00 0.00 3.21
2888 9005 6.459710 GCATGACACATAGTACTAGTAGCACA 60.460 42.308 8.85 5.12 0.00 4.57
2889 9006 5.915758 GCATGACACATAGTACTAGTAGCAC 59.084 44.000 8.85 0.00 0.00 4.40
2890 9007 5.592688 TGCATGACACATAGTACTAGTAGCA 59.407 40.000 8.85 9.07 0.00 3.49
2891 9008 6.073327 TGCATGACACATAGTACTAGTAGC 57.927 41.667 8.85 6.96 0.00 3.58
2892 9009 7.875971 TCATGCATGACACATAGTACTAGTAG 58.124 38.462 25.42 3.77 0.00 2.57
2893 9010 7.817418 TCATGCATGACACATAGTACTAGTA 57.183 36.000 25.42 0.00 0.00 1.82
2894 9011 6.715347 TCATGCATGACACATAGTACTAGT 57.285 37.500 25.42 0.00 0.00 2.57
2895 9012 9.866798 ATTATCATGCATGACACATAGTACTAG 57.133 33.333 30.92 3.62 40.03 2.57
2937 9054 8.432013 GGTGCATAATATCATAGGATGGTATCA 58.568 37.037 0.00 0.00 35.59 2.15
2938 9055 8.432013 TGGTGCATAATATCATAGGATGGTATC 58.568 37.037 0.00 0.00 35.59 2.24
2939 9056 8.335819 TGGTGCATAATATCATAGGATGGTAT 57.664 34.615 0.00 0.00 38.18 2.73
2940 9057 7.747809 TGGTGCATAATATCATAGGATGGTA 57.252 36.000 0.00 0.00 34.89 3.25
2941 9058 6.641161 TGGTGCATAATATCATAGGATGGT 57.359 37.500 0.00 0.00 34.89 3.55
2942 9059 6.489022 CCATGGTGCATAATATCATAGGATGG 59.511 42.308 2.57 0.00 34.89 3.51
2943 9060 7.284820 TCCATGGTGCATAATATCATAGGATG 58.715 38.462 12.58 0.00 34.89 3.51
2944 9061 7.421030 CCTCCATGGTGCATAATATCATAGGAT 60.421 40.741 12.58 0.00 37.55 3.24
2945 9062 6.126681 CCTCCATGGTGCATAATATCATAGGA 60.127 42.308 12.58 0.00 0.00 2.94
2946 9063 6.060136 CCTCCATGGTGCATAATATCATAGG 58.940 44.000 12.58 1.58 0.00 2.57
2962 9079 5.512060 CCAGTGTATGATTCTACCTCCATGG 60.512 48.000 4.97 4.97 42.93 3.66
2963 9080 5.070981 ACCAGTGTATGATTCTACCTCCATG 59.929 44.000 0.00 0.00 0.00 3.66
2964 9081 5.219739 ACCAGTGTATGATTCTACCTCCAT 58.780 41.667 0.00 0.00 0.00 3.41
2965 9082 4.620723 ACCAGTGTATGATTCTACCTCCA 58.379 43.478 0.00 0.00 0.00 3.86
2966 9083 6.493802 TGATACCAGTGTATGATTCTACCTCC 59.506 42.308 0.00 0.00 37.80 4.30
2967 9084 7.526142 TGATACCAGTGTATGATTCTACCTC 57.474 40.000 0.00 0.00 37.80 3.85
2968 9085 9.775539 ATATGATACCAGTGTATGATTCTACCT 57.224 33.333 0.00 0.00 37.80 3.08
3002 9119 9.175312 CCGTAATGTGGAGTATCATATACTAGT 57.825 37.037 0.00 0.00 36.25 2.57
3003 9120 8.129840 GCCGTAATGTGGAGTATCATATACTAG 58.870 40.741 0.00 0.00 36.25 2.57
3004 9121 7.067859 GGCCGTAATGTGGAGTATCATATACTA 59.932 40.741 0.00 0.00 36.25 1.82
3005 9122 6.127423 GGCCGTAATGTGGAGTATCATATACT 60.127 42.308 0.00 0.00 36.25 2.12
3006 9123 6.040878 GGCCGTAATGTGGAGTATCATATAC 58.959 44.000 0.00 0.00 36.25 1.47
3007 9124 5.717654 TGGCCGTAATGTGGAGTATCATATA 59.282 40.000 0.00 0.00 36.25 0.86
3008 9125 4.530553 TGGCCGTAATGTGGAGTATCATAT 59.469 41.667 0.00 0.00 36.25 1.78
3009 9126 3.898741 TGGCCGTAATGTGGAGTATCATA 59.101 43.478 0.00 0.00 36.25 2.15
3010 9127 2.703536 TGGCCGTAATGTGGAGTATCAT 59.296 45.455 0.00 0.00 36.25 2.45
3011 9128 2.102420 CTGGCCGTAATGTGGAGTATCA 59.898 50.000 0.00 0.00 36.25 2.15
3012 9129 2.755650 CTGGCCGTAATGTGGAGTATC 58.244 52.381 0.00 0.00 0.00 2.24
3013 9130 1.202651 GCTGGCCGTAATGTGGAGTAT 60.203 52.381 0.00 0.00 0.00 2.12
3014 9131 0.177141 GCTGGCCGTAATGTGGAGTA 59.823 55.000 0.00 0.00 0.00 2.59
3015 9132 1.078426 GCTGGCCGTAATGTGGAGT 60.078 57.895 0.00 0.00 0.00 3.85
3016 9133 2.173669 CGCTGGCCGTAATGTGGAG 61.174 63.158 0.00 0.00 0.00 3.86
3017 9134 2.125310 CGCTGGCCGTAATGTGGA 60.125 61.111 0.00 0.00 0.00 4.02
3030 9147 4.079850 AGAGCAGGCCTCACGCTG 62.080 66.667 20.06 1.61 43.31 5.18
3031 9148 3.768922 GAGAGCAGGCCTCACGCT 61.769 66.667 15.56 15.56 43.31 5.07
3032 9149 2.866085 ATTGAGAGCAGGCCTCACGC 62.866 60.000 0.00 3.11 43.31 5.34
3033 9150 1.088340 CATTGAGAGCAGGCCTCACG 61.088 60.000 0.00 0.00 43.31 4.35
3034 9151 0.251354 TCATTGAGAGCAGGCCTCAC 59.749 55.000 0.00 0.00 43.31 3.51
3035 9152 0.251354 GTCATTGAGAGCAGGCCTCA 59.749 55.000 0.00 0.00 43.31 3.86
3036 9153 0.251354 TGTCATTGAGAGCAGGCCTC 59.749 55.000 0.00 0.00 41.07 4.70
3037 9154 0.917533 ATGTCATTGAGAGCAGGCCT 59.082 50.000 0.00 0.00 0.00 5.19
3038 9155 1.760192 AATGTCATTGAGAGCAGGCC 58.240 50.000 0.00 0.00 0.00 5.19
3039 9156 3.192001 TCAAAATGTCATTGAGAGCAGGC 59.808 43.478 0.00 0.00 33.15 4.85
3040 9157 5.578005 ATCAAAATGTCATTGAGAGCAGG 57.422 39.130 0.00 0.00 39.92 4.85
3041 9158 7.487189 GGTAAATCAAAATGTCATTGAGAGCAG 59.513 37.037 0.00 0.00 39.92 4.24
3042 9159 7.177216 AGGTAAATCAAAATGTCATTGAGAGCA 59.823 33.333 0.00 0.00 39.92 4.26
3043 9160 7.542025 AGGTAAATCAAAATGTCATTGAGAGC 58.458 34.615 0.00 0.00 39.92 4.09
3044 9161 9.918630 AAAGGTAAATCAAAATGTCATTGAGAG 57.081 29.630 0.00 0.00 39.92 3.20
3053 9170 9.840427 CGAGTGATTAAAGGTAAATCAAAATGT 57.160 29.630 0.39 0.00 43.12 2.71
3054 9171 9.840427 ACGAGTGATTAAAGGTAAATCAAAATG 57.160 29.630 0.39 0.00 43.12 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.