Multiple sequence alignment - TraesCS2B01G384900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G384900 chr2B 100.000 4547 0 0 1 4547 548622991 548627537 0.000000e+00 8397.0
1 TraesCS2B01G384900 chr2A 93.828 3694 170 31 8 3667 611301828 611305497 0.000000e+00 5505.0
2 TraesCS2B01G384900 chr2A 89.692 747 31 13 3825 4547 611305498 611306222 0.000000e+00 911.0
3 TraesCS2B01G384900 chr2D 94.286 3150 132 15 530 3665 469990143 469993258 0.000000e+00 4776.0
4 TraesCS2B01G384900 chr2D 84.153 2644 342 38 940 3553 469983978 469986574 0.000000e+00 2490.0
5 TraesCS2B01G384900 chr2D 89.801 755 34 11 3826 4547 469993257 469994001 0.000000e+00 928.0
6 TraesCS2B01G384900 chr2D 89.404 453 31 11 8 454 469989573 469990014 5.140000e-154 555.0
7 TraesCS2B01G384900 chr1A 85.352 2881 354 46 682 3546 8331668 8334496 0.000000e+00 2920.0
8 TraesCS2B01G384900 chr1A 85.543 2663 341 33 914 3556 8341967 8344605 0.000000e+00 2745.0
9 TraesCS2B01G384900 chr1A 84.247 1860 255 21 992 2841 9375656 9373825 0.000000e+00 1777.0
10 TraesCS2B01G384900 chr1A 74.373 359 68 14 4198 4547 8156984 8156641 1.030000e-26 132.0
11 TraesCS2B01G384900 chr1D 85.802 2613 343 21 952 3554 6913119 6915713 0.000000e+00 2745.0
12 TraesCS2B01G384900 chr1D 84.403 2603 324 50 985 3555 407672559 407670007 0.000000e+00 2483.0
13 TraesCS2B01G384900 chr1D 82.249 2766 390 53 938 3653 6721657 6718943 0.000000e+00 2294.0
14 TraesCS2B01G384900 chr1D 74.499 349 69 10 4205 4547 6718690 6718356 2.850000e-27 134.0
15 TraesCS2B01G384900 chr5B 84.399 2596 336 43 985 3554 13776148 13773596 0.000000e+00 2486.0
16 TraesCS2B01G384900 chr5B 98.817 169 0 2 3661 3827 221204144 221204312 2.660000e-77 300.0
17 TraesCS2B01G384900 chr5B 95.000 180 8 1 3664 3842 43959396 43959217 9.630000e-72 281.0
18 TraesCS2B01G384900 chr5A 84.225 2599 334 44 985 3554 12194231 12191680 0.000000e+00 2459.0
19 TraesCS2B01G384900 chr1B 82.108 2761 389 56 938 3649 8867293 8864589 0.000000e+00 2265.0
20 TraesCS2B01G384900 chr1B 98.193 166 2 1 3662 3827 662536900 662537064 5.760000e-74 289.0
21 TraesCS2B01G384900 chr1B 75.714 350 63 11 4205 4547 8864331 8863997 6.090000e-34 156.0
22 TraesCS2B01G384900 chr6B 98.171 164 3 0 3664 3827 160905141 160905304 2.070000e-73 287.0
23 TraesCS2B01G384900 chr6B 97.076 171 3 2 3657 3827 606433849 606434017 2.070000e-73 287.0
24 TraesCS2B01G384900 chr5D 96.023 176 5 2 3661 3834 92111716 92111541 7.450000e-73 285.0
25 TraesCS2B01G384900 chr5D 95.000 180 7 2 3649 3827 127057385 127057207 9.630000e-72 281.0
26 TraesCS2B01G384900 chr3B 94.505 182 8 2 3656 3836 377111164 377110984 3.460000e-71 279.0
27 TraesCS2B01G384900 chr7B 94.054 185 7 4 3645 3828 412800298 412800479 1.250000e-70 278.0
28 TraesCS2B01G384900 chr4A 81.429 70 13 0 66 135 222107078 222107147 1.770000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G384900 chr2B 548622991 548627537 4546 False 8397.00 8397 100.000 1 4547 1 chr2B.!!$F1 4546
1 TraesCS2B01G384900 chr2A 611301828 611306222 4394 False 3208.00 5505 91.760 8 4547 2 chr2A.!!$F1 4539
2 TraesCS2B01G384900 chr2D 469983978 469994001 10023 False 2187.25 4776 89.411 8 4547 4 chr2D.!!$F1 4539
3 TraesCS2B01G384900 chr1A 8331668 8334496 2828 False 2920.00 2920 85.352 682 3546 1 chr1A.!!$F1 2864
4 TraesCS2B01G384900 chr1A 8341967 8344605 2638 False 2745.00 2745 85.543 914 3556 1 chr1A.!!$F2 2642
5 TraesCS2B01G384900 chr1A 9373825 9375656 1831 True 1777.00 1777 84.247 992 2841 1 chr1A.!!$R2 1849
6 TraesCS2B01G384900 chr1D 6913119 6915713 2594 False 2745.00 2745 85.802 952 3554 1 chr1D.!!$F1 2602
7 TraesCS2B01G384900 chr1D 407670007 407672559 2552 True 2483.00 2483 84.403 985 3555 1 chr1D.!!$R1 2570
8 TraesCS2B01G384900 chr1D 6718356 6721657 3301 True 1214.00 2294 78.374 938 4547 2 chr1D.!!$R2 3609
9 TraesCS2B01G384900 chr5B 13773596 13776148 2552 True 2486.00 2486 84.399 985 3554 1 chr5B.!!$R1 2569
10 TraesCS2B01G384900 chr5A 12191680 12194231 2551 True 2459.00 2459 84.225 985 3554 1 chr5A.!!$R1 2569
11 TraesCS2B01G384900 chr1B 8863997 8867293 3296 True 1210.50 2265 78.911 938 4547 2 chr1B.!!$R1 3609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
701 6373 0.253044 TGGTTCTATGCAGCCCACTC 59.747 55.0 0.0 0.0 0.00 3.51 F
1312 7041 0.257039 GGATCAGCCCATCACCAACT 59.743 55.0 0.0 0.0 0.00 3.16 F
2237 8005 1.014564 GCCGTTGCTACCACTCAGAC 61.015 60.0 0.0 0.0 33.53 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 7265 1.449246 GTCGAAGCTCTGCCATGCT 60.449 57.895 0.00 0.00 41.82 3.79 R
3288 9075 1.941999 GCTTCCTGATGGCTTGCACC 61.942 60.000 0.00 0.00 0.00 5.01 R
4105 9909 1.446272 GTTCTGGAGAACGGAGCCG 60.446 63.158 7.48 7.48 43.97 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 5632 1.808411 AAGCGTGTGATCGACCAAAT 58.192 45.000 0.00 0.00 0.00 2.32
56 5645 4.507710 TCGACCAAATGAGAGGAATTGAG 58.492 43.478 0.00 0.00 0.00 3.02
98 5689 0.548031 GTCCAATGAGCCTGGGATGA 59.452 55.000 0.00 0.00 34.46 2.92
165 5759 1.529796 CCAATACTGCCGCCCCTTA 59.470 57.895 0.00 0.00 0.00 2.69
170 5764 1.692173 TACTGCCGCCCCTTATGGTC 61.692 60.000 0.00 0.00 0.00 4.02
176 5770 2.938838 CCGCCCCTTATGGTCAATTTA 58.061 47.619 0.00 0.00 0.00 1.40
203 5797 5.454897 CCTTTTCCCCCTAGCTCTATGTTAC 60.455 48.000 0.00 0.00 0.00 2.50
470 6097 9.093970 GTTAATTTGTTTAAGTTTGCCAACTCT 57.906 29.630 3.30 0.00 42.89 3.24
510 6137 8.154203 TGTTATTTCTGTCTGTGGTCTCATTTA 58.846 33.333 0.00 0.00 0.00 1.40
511 6138 8.443937 GTTATTTCTGTCTGTGGTCTCATTTAC 58.556 37.037 0.00 0.00 0.00 2.01
512 6139 4.537135 TCTGTCTGTGGTCTCATTTACC 57.463 45.455 0.00 0.00 37.53 2.85
701 6373 0.253044 TGGTTCTATGCAGCCCACTC 59.747 55.000 0.00 0.00 0.00 3.51
705 6377 0.396556 TCTATGCAGCCCACTCGGTA 60.397 55.000 0.00 0.00 0.00 4.02
720 6392 4.872691 CACTCGGTAGAAGCTTCATTCAAT 59.127 41.667 27.57 8.95 0.00 2.57
737 6409 4.537135 TCAATGTCCTCCTTGTAGACAC 57.463 45.455 0.00 0.00 42.89 3.67
817 6511 7.216973 CCAAGTGGGTACTATAGCTAGTTAG 57.783 44.000 0.00 0.00 39.04 2.34
821 6515 5.769162 GTGGGTACTATAGCTAGTTAGTGCT 59.231 44.000 17.04 0.00 39.04 4.40
822 6516 5.768662 TGGGTACTATAGCTAGTTAGTGCTG 59.231 44.000 17.04 0.00 39.04 4.41
824 6518 4.857509 ACTATAGCTAGTTAGTGCTGCC 57.142 45.455 6.28 0.00 40.08 4.85
826 6520 3.742433 ATAGCTAGTTAGTGCTGCCTG 57.258 47.619 0.00 0.00 40.08 4.85
841 6537 5.066893 GTGCTGCCTGAATCTGAATAATTGA 59.933 40.000 0.00 0.00 0.00 2.57
872 6568 6.440647 AGTGGATTGTAGTGAATTCTCTGGTA 59.559 38.462 18.11 5.35 0.00 3.25
1035 6743 5.552870 ACATATTATCACTCGGGCTTCTT 57.447 39.130 0.00 0.00 0.00 2.52
1038 6746 6.493802 ACATATTATCACTCGGGCTTCTTCTA 59.506 38.462 0.00 0.00 0.00 2.10
1068 6776 1.954362 CTCCTTGGTGCTCCTCCTCG 61.954 65.000 6.34 0.00 34.23 4.63
1126 6834 1.672356 CTGGCCTTCGGTGACAAGG 60.672 63.158 3.32 0.00 39.88 3.61
1312 7041 0.257039 GGATCAGCCCATCACCAACT 59.743 55.000 0.00 0.00 0.00 3.16
1386 7121 1.579084 TAAACCATGCCGCCGACAAC 61.579 55.000 0.00 0.00 0.00 3.32
1422 7157 5.380900 TGGTCCACTCACATTGTCAATAAA 58.619 37.500 0.00 0.00 0.00 1.40
1443 7184 1.171308 GGACACACAGCAGCATCAAT 58.829 50.000 0.00 0.00 0.00 2.57
1791 7541 3.798878 CGCTGCTTGATTCGAATTCTCTA 59.201 43.478 12.81 0.00 0.00 2.43
1836 7586 9.961265 CTAGTATATGTTGATAACGACCAAGAA 57.039 33.333 0.00 0.00 0.00 2.52
1922 7678 4.505922 GTCTGGTCAGATAAAGCTGAATCG 59.494 45.833 0.00 0.00 45.69 3.34
2237 8005 1.014564 GCCGTTGCTACCACTCAGAC 61.015 60.000 0.00 0.00 33.53 3.51
2355 8123 6.036517 GTGTAACTCTTAGTGATGGCATTGAG 59.963 42.308 0.00 5.85 0.00 3.02
2535 8307 5.205056 AGGAACAAATTTAAGTGGTGTGGA 58.795 37.500 0.00 0.00 0.00 4.02
2670 8442 4.082408 GGTTTTGGTTCTGTATACAAGGGC 60.082 45.833 7.06 0.00 0.00 5.19
2674 8446 1.664151 GTTCTGTATACAAGGGCGTGC 59.336 52.381 7.06 0.00 0.00 5.34
2961 8733 1.672881 GGAATTGCCAGAGGATTGTCG 59.327 52.381 0.00 0.00 36.34 4.35
3251 9023 2.549754 CCTCACCTGAAACATCACACAC 59.450 50.000 0.00 0.00 0.00 3.82
3288 9075 4.279169 AGCCAACATGATGAATATTTCCCG 59.721 41.667 4.25 0.00 0.00 5.14
3340 9127 5.814705 GGAGATGTGAAGAGTTTAGTGGATG 59.185 44.000 0.00 0.00 0.00 3.51
3655 9456 6.817140 AGTCTCCAAATCGTCTGTTATTTACC 59.183 38.462 0.00 0.00 0.00 2.85
3673 9474 7.957992 ATTTACCTATCTTATACTCCCTCCG 57.042 40.000 0.00 0.00 0.00 4.63
3674 9475 6.460103 TTACCTATCTTATACTCCCTCCGT 57.540 41.667 0.00 0.00 0.00 4.69
3675 9476 5.336491 ACCTATCTTATACTCCCTCCGTT 57.664 43.478 0.00 0.00 0.00 4.44
3676 9477 5.323581 ACCTATCTTATACTCCCTCCGTTC 58.676 45.833 0.00 0.00 0.00 3.95
3677 9478 4.705991 CCTATCTTATACTCCCTCCGTTCC 59.294 50.000 0.00 0.00 0.00 3.62
3678 9479 3.967467 TCTTATACTCCCTCCGTTCCT 57.033 47.619 0.00 0.00 0.00 3.36
3679 9480 5.595814 ATCTTATACTCCCTCCGTTCCTA 57.404 43.478 0.00 0.00 0.00 2.94
3680 9481 5.393068 TCTTATACTCCCTCCGTTCCTAA 57.607 43.478 0.00 0.00 0.00 2.69
3681 9482 5.769835 TCTTATACTCCCTCCGTTCCTAAA 58.230 41.667 0.00 0.00 0.00 1.85
3682 9483 6.379579 TCTTATACTCCCTCCGTTCCTAAAT 58.620 40.000 0.00 0.00 0.00 1.40
3683 9484 7.529555 TCTTATACTCCCTCCGTTCCTAAATA 58.470 38.462 0.00 0.00 0.00 1.40
3684 9485 7.449704 TCTTATACTCCCTCCGTTCCTAAATAC 59.550 40.741 0.00 0.00 0.00 1.89
3685 9486 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3686 9487 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3687 9488 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3688 9489 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3689 9490 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3690 9491 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3691 9492 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3692 9493 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3693 9494 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3694 9495 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
3695 9496 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3696 9497 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3697 9498 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
3698 9499 9.291664 CGTTCCTAAATACTTGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
3721 9522 9.355215 AGAGATTTTAACAAGTGACTACATACG 57.645 33.333 0.00 0.00 0.00 3.06
3722 9523 9.350357 GAGATTTTAACAAGTGACTACATACGA 57.650 33.333 0.00 0.00 0.00 3.43
3723 9524 9.701098 AGATTTTAACAAGTGACTACATACGAA 57.299 29.630 0.00 0.00 0.00 3.85
3724 9525 9.953825 GATTTTAACAAGTGACTACATACGAAG 57.046 33.333 0.00 0.00 0.00 3.79
3725 9526 6.939551 TTAACAAGTGACTACATACGAAGC 57.060 37.500 0.00 0.00 0.00 3.86
3726 9527 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
3727 9528 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
3728 9529 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
3729 9530 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
3730 9531 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
3731 9532 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
3732 9533 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
3733 9534 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
3734 9535 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
3735 9536 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
3736 9537 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
3737 9538 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
3738 9539 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
3739 9540 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
3740 9541 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
3741 9542 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
3742 9543 6.992063 ACGAAGCAAAATGAGTGAATCTAT 57.008 33.333 0.00 0.00 0.00 1.98
3743 9544 9.764363 ATACGAAGCAAAATGAGTGAATCTATA 57.236 29.630 0.00 0.00 0.00 1.31
3744 9545 7.910304 ACGAAGCAAAATGAGTGAATCTATAC 58.090 34.615 0.00 0.00 0.00 1.47
3745 9546 7.766278 ACGAAGCAAAATGAGTGAATCTATACT 59.234 33.333 0.00 0.00 0.00 2.12
3746 9547 8.272176 CGAAGCAAAATGAGTGAATCTATACTC 58.728 37.037 0.00 0.00 42.77 2.59
3747 9548 9.323985 GAAGCAAAATGAGTGAATCTATACTCT 57.676 33.333 0.00 0.00 42.86 3.24
3779 9580 9.682465 ATGTCTATATACATCCGTATGTGTAGT 57.318 33.333 3.56 0.00 45.99 2.73
3780 9581 9.159364 TGTCTATATACATCCGTATGTGTAGTC 57.841 37.037 3.56 3.10 45.99 2.59
3781 9582 8.610896 GTCTATATACATCCGTATGTGTAGTCC 58.389 40.741 3.56 0.00 45.99 3.85
3782 9583 8.323567 TCTATATACATCCGTATGTGTAGTCCA 58.676 37.037 3.56 0.00 45.99 4.02
3783 9584 7.956328 ATATACATCCGTATGTGTAGTCCAT 57.044 36.000 3.56 0.00 45.99 3.41
3784 9585 6.665992 ATACATCCGTATGTGTAGTCCATT 57.334 37.500 3.56 0.00 45.99 3.16
3785 9586 5.353394 ACATCCGTATGTGTAGTCCATTT 57.647 39.130 0.00 0.00 44.79 2.32
3786 9587 5.116180 ACATCCGTATGTGTAGTCCATTTG 58.884 41.667 0.00 0.00 44.79 2.32
3787 9588 5.105106 ACATCCGTATGTGTAGTCCATTTGA 60.105 40.000 0.00 0.00 44.79 2.69
3788 9589 5.408880 TCCGTATGTGTAGTCCATTTGAA 57.591 39.130 0.00 0.00 0.00 2.69
3789 9590 5.795972 TCCGTATGTGTAGTCCATTTGAAA 58.204 37.500 0.00 0.00 0.00 2.69
3790 9591 6.411376 TCCGTATGTGTAGTCCATTTGAAAT 58.589 36.000 0.00 0.00 0.00 2.17
3791 9592 6.537301 TCCGTATGTGTAGTCCATTTGAAATC 59.463 38.462 0.00 0.00 0.00 2.17
3792 9593 6.538742 CCGTATGTGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 0.00 2.40
3793 9594 7.254455 CCGTATGTGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 0.00 2.75
3794 9595 7.492669 CGTATGTGTAGTCCATTTGAAATCTCT 59.507 37.037 0.00 0.00 0.00 3.10
3795 9596 9.817809 GTATGTGTAGTCCATTTGAAATCTCTA 57.182 33.333 0.00 0.00 0.00 2.43
3796 9597 8.954950 ATGTGTAGTCCATTTGAAATCTCTAG 57.045 34.615 0.00 0.00 0.00 2.43
3797 9598 8.134202 TGTGTAGTCCATTTGAAATCTCTAGA 57.866 34.615 0.00 0.00 0.00 2.43
3798 9599 8.593679 TGTGTAGTCCATTTGAAATCTCTAGAA 58.406 33.333 0.00 0.00 0.00 2.10
3799 9600 9.436957 GTGTAGTCCATTTGAAATCTCTAGAAA 57.563 33.333 0.00 0.00 0.00 2.52
3800 9601 9.658799 TGTAGTCCATTTGAAATCTCTAGAAAG 57.341 33.333 0.00 0.00 0.00 2.62
3801 9602 9.877178 GTAGTCCATTTGAAATCTCTAGAAAGA 57.123 33.333 0.00 0.00 0.00 2.52
3802 9603 8.785329 AGTCCATTTGAAATCTCTAGAAAGAC 57.215 34.615 0.00 0.00 0.00 3.01
3803 9604 8.378565 AGTCCATTTGAAATCTCTAGAAAGACA 58.621 33.333 0.00 0.00 0.00 3.41
3804 9605 9.003658 GTCCATTTGAAATCTCTAGAAAGACAA 57.996 33.333 0.00 0.00 0.00 3.18
3805 9606 9.573166 TCCATTTGAAATCTCTAGAAAGACAAA 57.427 29.630 0.00 4.41 0.00 2.83
3818 9619 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3819 9620 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3820 9621 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3821 9622 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3822 9623 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3823 9624 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3862 9664 4.900635 AGCATTGTAGCGAAATAAAGGG 57.099 40.909 0.00 0.00 40.15 3.95
3957 9759 7.313646 TGCTTATTCACTACTACAGAGACAAC 58.686 38.462 0.00 0.00 0.00 3.32
3971 9773 5.807520 ACAGAGACAACTATATTTGACAGCG 59.192 40.000 9.59 0.00 0.00 5.18
4031 9833 3.869065 TCCATAATTCGGACAAGGTCAC 58.131 45.455 0.00 0.00 33.68 3.67
4134 9938 0.037882 CTCCAGAACAGAAGCGCTCA 60.038 55.000 12.06 0.00 0.00 4.26
4194 9998 3.096489 TCAACAAGGCAGACAAAATGC 57.904 42.857 0.00 0.00 43.09 3.56
4217 10021 9.846248 ATGCAGAAAGTTATTACATTTCTTCAC 57.154 29.630 0.00 4.44 40.40 3.18
4218 10022 9.066892 TGCAGAAAGTTATTACATTTCTTCACT 57.933 29.630 6.58 0.00 40.40 3.41
4219 10023 9.548208 GCAGAAAGTTATTACATTTCTTCACTC 57.452 33.333 6.58 0.00 40.40 3.51
4273 10108 1.133199 ACATTGCCTCCCAGAACCAAA 60.133 47.619 0.00 0.00 0.00 3.28
4304 10139 2.097825 GAATTCTGCAGTCCATTGCCT 58.902 47.619 14.67 0.00 43.43 4.75
4343 10182 2.644992 GTGCAAAGCTGAACCGGG 59.355 61.111 6.32 0.00 0.00 5.73
4381 10220 4.929479 TGGTCCATTTGCTGGTACTTATT 58.071 39.130 0.00 0.00 46.08 1.40
4416 10255 1.277580 ACTGAGGATGGCTTCCCTGG 61.278 60.000 15.28 8.30 46.81 4.45
4426 10271 1.529010 CTTCCCTGGTGTTGCAGCA 60.529 57.895 0.00 0.00 39.63 4.41
4541 10386 1.926511 GCGTCTGTTCATTGCAGGGG 61.927 60.000 0.00 0.00 34.89 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.009907 GCTTATTGAAAGCAGTCAATTGATTCC 59.990 37.037 12.12 0.00 44.09 3.01
2 3 7.253552 CGCTTATTGAAAGCAGTCAATTGATTC 60.254 37.037 12.12 11.13 44.09 2.52
5 6 5.048782 ACGCTTATTGAAAGCAGTCAATTGA 60.049 36.000 17.04 3.38 44.09 2.57
22 5611 2.665649 TTGGTCGATCACACGCTTAT 57.334 45.000 0.00 0.00 0.00 1.73
43 5632 5.280499 TGGTAGATTCCTCAATTCCTCTCA 58.720 41.667 0.00 0.00 0.00 3.27
56 5645 4.010349 CAAGGTCCTGTTTGGTAGATTCC 58.990 47.826 0.00 0.00 37.07 3.01
165 5759 4.164030 GGGGAAAAGGCATAAATTGACCAT 59.836 41.667 0.00 0.00 31.49 3.55
170 5764 4.202253 GCTAGGGGGAAAAGGCATAAATTG 60.202 45.833 0.00 0.00 0.00 2.32
176 5770 0.553333 GAGCTAGGGGGAAAAGGCAT 59.447 55.000 0.00 0.00 0.00 4.40
232 5827 5.838529 AGTTGGCAACTTAAAACACATACC 58.161 37.500 26.54 0.00 39.04 2.73
376 5971 7.497579 ACCAACCCACAAAGATAAATGTTTTTC 59.502 33.333 0.00 0.00 0.00 2.29
492 6119 4.543590 AGGTAAATGAGACCACAGACAG 57.456 45.455 0.00 0.00 39.65 3.51
510 6137 6.549364 TGAATATCAACACAAAAGACCAAGGT 59.451 34.615 0.00 0.00 0.00 3.50
511 6138 6.980593 TGAATATCAACACAAAAGACCAAGG 58.019 36.000 0.00 0.00 0.00 3.61
512 6139 8.918658 CAATGAATATCAACACAAAAGACCAAG 58.081 33.333 0.00 0.00 0.00 3.61
673 6345 1.299541 GCATAGAACCACCATGGACG 58.700 55.000 21.47 10.12 40.96 4.79
674 6346 2.292267 CTGCATAGAACCACCATGGAC 58.708 52.381 21.47 4.24 40.96 4.02
675 6347 1.408683 GCTGCATAGAACCACCATGGA 60.409 52.381 21.47 0.00 40.96 3.41
676 6348 1.027357 GCTGCATAGAACCACCATGG 58.973 55.000 11.19 11.19 45.02 3.66
677 6349 1.027357 GGCTGCATAGAACCACCATG 58.973 55.000 0.50 0.00 0.00 3.66
678 6350 0.106519 GGGCTGCATAGAACCACCAT 60.107 55.000 0.50 0.00 0.00 3.55
679 6351 1.302949 GGGCTGCATAGAACCACCA 59.697 57.895 0.50 0.00 0.00 4.17
680 6352 1.032114 GTGGGCTGCATAGAACCACC 61.032 60.000 11.08 0.00 42.70 4.61
701 6373 4.034510 GGACATTGAATGAAGCTTCTACCG 59.965 45.833 26.09 11.09 0.00 4.02
705 6377 4.018597 AGGAGGACATTGAATGAAGCTTCT 60.019 41.667 26.09 8.01 0.00 2.85
720 6392 0.601558 GCGTGTCTACAAGGAGGACA 59.398 55.000 0.00 0.00 37.60 4.02
780 6474 0.963962 CACTTGGGCTGCAACTTGAT 59.036 50.000 0.50 0.00 0.00 2.57
806 6500 3.300388 TCAGGCAGCACTAACTAGCTAT 58.700 45.455 0.00 0.00 39.50 2.97
807 6501 2.735151 TCAGGCAGCACTAACTAGCTA 58.265 47.619 0.00 0.00 39.50 3.32
808 6502 1.561643 TCAGGCAGCACTAACTAGCT 58.438 50.000 0.00 0.00 42.94 3.32
809 6503 2.386661 TTCAGGCAGCACTAACTAGC 57.613 50.000 0.00 0.00 0.00 3.42
810 6504 4.118410 CAGATTCAGGCAGCACTAACTAG 58.882 47.826 0.00 0.00 0.00 2.57
811 6505 3.769300 TCAGATTCAGGCAGCACTAACTA 59.231 43.478 0.00 0.00 0.00 2.24
812 6506 2.568956 TCAGATTCAGGCAGCACTAACT 59.431 45.455 0.00 0.00 0.00 2.24
813 6507 2.977914 TCAGATTCAGGCAGCACTAAC 58.022 47.619 0.00 0.00 0.00 2.34
814 6508 3.701205 TTCAGATTCAGGCAGCACTAA 57.299 42.857 0.00 0.00 0.00 2.24
815 6509 3.920231 ATTCAGATTCAGGCAGCACTA 57.080 42.857 0.00 0.00 0.00 2.74
816 6510 2.803030 ATTCAGATTCAGGCAGCACT 57.197 45.000 0.00 0.00 0.00 4.40
817 6511 5.066893 TCAATTATTCAGATTCAGGCAGCAC 59.933 40.000 0.00 0.00 0.00 4.40
821 6515 6.367161 TGGATCAATTATTCAGATTCAGGCA 58.633 36.000 0.00 0.00 0.00 4.75
822 6516 6.889301 TGGATCAATTATTCAGATTCAGGC 57.111 37.500 0.00 0.00 0.00 4.85
824 6518 9.731819 CACTTTGGATCAATTATTCAGATTCAG 57.268 33.333 0.00 0.00 29.53 3.02
826 6520 8.906867 TCCACTTTGGATCAATTATTCAGATTC 58.093 33.333 0.00 0.00 42.67 2.52
1035 6743 3.838317 ACCAAGGAGTAGTGTGCAATAGA 59.162 43.478 0.00 0.00 0.00 1.98
1038 6746 2.783135 CACCAAGGAGTAGTGTGCAAT 58.217 47.619 0.00 0.00 0.00 3.56
1068 6776 0.032403 TGTCATTGCTTGCAGTTGCC 59.968 50.000 1.06 0.00 41.18 4.52
1126 6834 0.662374 TTGCCGTTTCTCGAGACGAC 60.662 55.000 23.63 19.18 41.53 4.34
1312 7041 2.769663 ACTGTGTTAGGTTGACACTGGA 59.230 45.455 15.37 0.00 45.53 3.86
1335 7064 5.068636 AGATTGCCATCGCTTGATATCTTT 58.931 37.500 3.98 0.00 34.17 2.52
1386 7121 1.069500 GTGGACCAAACAACGGATTCG 60.069 52.381 0.00 0.00 43.02 3.34
1422 7157 0.109153 TGATGCTGCTGTGTGTCCTT 59.891 50.000 0.00 0.00 0.00 3.36
1443 7184 0.320421 GAACGGCAGAACTAGTGGCA 60.320 55.000 14.16 0.00 40.44 4.92
1515 7265 1.449246 GTCGAAGCTCTGCCATGCT 60.449 57.895 0.00 0.00 41.82 3.79
2237 8005 4.511454 TGAGACAAGTTTCTTCACATTCGG 59.489 41.667 0.00 0.00 0.00 4.30
2355 8123 9.646427 AGATAAAGAACATCTTCAGAAGTGTAC 57.354 33.333 10.09 0.00 35.27 2.90
2670 8442 3.643763 AGTCTTTGAGTCACTTAGCACG 58.356 45.455 0.00 0.00 0.00 5.34
2674 8446 7.024768 GCTACAGTAGTCTTTGAGTCACTTAG 58.975 42.308 9.42 0.00 0.00 2.18
2961 8733 3.121944 CGTGACAACTCTGATGCAAGTAC 59.878 47.826 0.00 0.00 0.00 2.73
3251 9023 2.275318 GTTGGCTGCTGCTCTTAGTAG 58.725 52.381 15.64 0.00 39.59 2.57
3288 9075 1.941999 GCTTCCTGATGGCTTGCACC 61.942 60.000 0.00 0.00 0.00 5.01
3593 9391 5.243730 CCTTCTTTTATTCCTTGTGCTCCAA 59.756 40.000 0.00 0.00 0.00 3.53
3655 9456 5.572252 AGGAACGGAGGGAGTATAAGATAG 58.428 45.833 0.00 0.00 0.00 2.08
3667 9468 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3668 9469 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3669 9470 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
3670 9471 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
3671 9472 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
3672 9473 9.291664 CTCTAGAAAGACAAGTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
3695 9496 9.355215 CGTATGTAGTCACTTGTTAAAATCTCT 57.645 33.333 0.00 0.00 0.00 3.10
3696 9497 9.350357 TCGTATGTAGTCACTTGTTAAAATCTC 57.650 33.333 0.00 0.00 0.00 2.75
3697 9498 9.701098 TTCGTATGTAGTCACTTGTTAAAATCT 57.299 29.630 0.00 0.00 0.00 2.40
3698 9499 9.953825 CTTCGTATGTAGTCACTTGTTAAAATC 57.046 33.333 0.00 0.00 0.00 2.17
3699 9500 8.440833 GCTTCGTATGTAGTCACTTGTTAAAAT 58.559 33.333 0.00 0.00 0.00 1.82
3700 9501 7.438757 TGCTTCGTATGTAGTCACTTGTTAAAA 59.561 33.333 0.00 0.00 0.00 1.52
3701 9502 6.924612 TGCTTCGTATGTAGTCACTTGTTAAA 59.075 34.615 0.00 0.00 0.00 1.52
3702 9503 6.448852 TGCTTCGTATGTAGTCACTTGTTAA 58.551 36.000 0.00 0.00 0.00 2.01
3703 9504 6.016213 TGCTTCGTATGTAGTCACTTGTTA 57.984 37.500 0.00 0.00 0.00 2.41
3704 9505 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
3705 9506 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
3706 9507 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
3707 9508 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
3708 9509 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
3709 9510 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
3710 9511 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
3711 9512 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
3712 9513 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
3713 9514 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
3714 9515 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
3715 9516 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
3716 9517 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
3717 9518 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
3718 9519 9.031360 GTATAGATTCACTCATTTTGCTTCGTA 57.969 33.333 0.00 0.00 0.00 3.43
3719 9520 6.992063 ATAGATTCACTCATTTTGCTTCGT 57.008 33.333 0.00 0.00 0.00 3.85
3720 9521 8.136057 AGTATAGATTCACTCATTTTGCTTCG 57.864 34.615 0.00 0.00 0.00 3.79
3721 9522 9.323985 AGAGTATAGATTCACTCATTTTGCTTC 57.676 33.333 4.70 0.00 42.99 3.86
3753 9554 9.682465 ACTACACATACGGATGTATATAGACAT 57.318 33.333 23.13 12.70 44.82 3.06
3754 9555 9.159364 GACTACACATACGGATGTATATAGACA 57.841 37.037 23.13 2.07 44.82 3.41
3755 9556 8.610896 GGACTACACATACGGATGTATATAGAC 58.389 40.741 23.13 18.69 44.82 2.59
3756 9557 8.323567 TGGACTACACATACGGATGTATATAGA 58.676 37.037 23.13 7.05 44.82 1.98
3757 9558 8.502105 TGGACTACACATACGGATGTATATAG 57.498 38.462 14.23 16.68 44.82 1.31
3758 9559 9.470399 AATGGACTACACATACGGATGTATATA 57.530 33.333 14.23 5.72 44.82 0.86
3759 9560 7.956328 ATGGACTACACATACGGATGTATAT 57.044 36.000 14.23 4.75 44.82 0.86
3760 9561 7.770366 AATGGACTACACATACGGATGTATA 57.230 36.000 14.23 5.63 44.82 1.47
3761 9562 6.665992 AATGGACTACACATACGGATGTAT 57.334 37.500 14.23 4.42 44.82 2.29
3762 9563 6.097129 TCAAATGGACTACACATACGGATGTA 59.903 38.462 14.23 0.00 44.82 2.29
3764 9565 5.356426 TCAAATGGACTACACATACGGATG 58.644 41.667 5.94 5.94 39.16 3.51
3765 9566 5.607939 TCAAATGGACTACACATACGGAT 57.392 39.130 0.00 0.00 0.00 4.18
3766 9567 5.408880 TTCAAATGGACTACACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
3767 9568 6.538742 AGATTTCAAATGGACTACACATACGG 59.461 38.462 0.00 0.00 0.00 4.02
3768 9569 7.492669 AGAGATTTCAAATGGACTACACATACG 59.507 37.037 0.00 0.00 0.00 3.06
3769 9570 8.723942 AGAGATTTCAAATGGACTACACATAC 57.276 34.615 0.00 0.00 0.00 2.39
3771 9572 8.762645 TCTAGAGATTTCAAATGGACTACACAT 58.237 33.333 0.00 0.00 0.00 3.21
3772 9573 8.134202 TCTAGAGATTTCAAATGGACTACACA 57.866 34.615 0.00 0.00 0.00 3.72
3773 9574 9.436957 TTTCTAGAGATTTCAAATGGACTACAC 57.563 33.333 0.00 0.00 0.00 2.90
3774 9575 9.658799 CTTTCTAGAGATTTCAAATGGACTACA 57.341 33.333 0.00 0.00 0.00 2.74
3775 9576 9.877178 TCTTTCTAGAGATTTCAAATGGACTAC 57.123 33.333 0.00 0.00 0.00 2.73
3776 9577 9.877178 GTCTTTCTAGAGATTTCAAATGGACTA 57.123 33.333 0.00 0.00 0.00 2.59
3777 9578 8.378565 TGTCTTTCTAGAGATTTCAAATGGACT 58.621 33.333 0.00 0.00 0.00 3.85
3778 9579 8.553459 TGTCTTTCTAGAGATTTCAAATGGAC 57.447 34.615 0.00 0.00 0.00 4.02
3779 9580 9.573166 TTTGTCTTTCTAGAGATTTCAAATGGA 57.427 29.630 0.00 0.00 0.00 3.41
3792 9593 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3793 9594 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3794 9595 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3795 9596 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3796 9597 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3797 9598 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3798 9599 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3799 9600 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3800 9601 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3801 9602 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3802 9603 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3803 9604 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3804 9605 8.759782 CATATACTCCCTCCGTTCCTAAATATT 58.240 37.037 0.00 0.00 0.00 1.28
3805 9606 7.344871 CCATATACTCCCTCCGTTCCTAAATAT 59.655 40.741 0.00 0.00 0.00 1.28
3806 9607 6.666546 CCATATACTCCCTCCGTTCCTAAATA 59.333 42.308 0.00 0.00 0.00 1.40
3807 9608 5.484290 CCATATACTCCCTCCGTTCCTAAAT 59.516 44.000 0.00 0.00 0.00 1.40
3808 9609 4.836736 CCATATACTCCCTCCGTTCCTAAA 59.163 45.833 0.00 0.00 0.00 1.85
3809 9610 4.140853 ACCATATACTCCCTCCGTTCCTAA 60.141 45.833 0.00 0.00 0.00 2.69
3810 9611 3.400322 ACCATATACTCCCTCCGTTCCTA 59.600 47.826 0.00 0.00 0.00 2.94
3811 9612 2.179424 ACCATATACTCCCTCCGTTCCT 59.821 50.000 0.00 0.00 0.00 3.36
3812 9613 2.606378 ACCATATACTCCCTCCGTTCC 58.394 52.381 0.00 0.00 0.00 3.62
3813 9614 7.472334 TTTATACCATATACTCCCTCCGTTC 57.528 40.000 0.00 0.00 0.00 3.95
3814 9615 6.070938 GCTTTATACCATATACTCCCTCCGTT 60.071 42.308 0.00 0.00 0.00 4.44
3815 9616 5.421374 GCTTTATACCATATACTCCCTCCGT 59.579 44.000 0.00 0.00 0.00 4.69
3816 9617 5.421056 TGCTTTATACCATATACTCCCTCCG 59.579 44.000 0.00 0.00 0.00 4.63
3817 9618 6.869206 TGCTTTATACCATATACTCCCTCC 57.131 41.667 0.00 0.00 0.00 4.30
3818 9619 6.819146 GCTTGCTTTATACCATATACTCCCTC 59.181 42.308 0.00 0.00 0.00 4.30
3819 9620 6.272324 TGCTTGCTTTATACCATATACTCCCT 59.728 38.462 0.00 0.00 0.00 4.20
3820 9621 6.472887 TGCTTGCTTTATACCATATACTCCC 58.527 40.000 0.00 0.00 0.00 4.30
3821 9622 8.454106 CAATGCTTGCTTTATACCATATACTCC 58.546 37.037 0.00 0.00 0.00 3.85
3822 9623 9.003658 ACAATGCTTGCTTTATACCATATACTC 57.996 33.333 0.00 0.00 0.00 2.59
3823 9624 8.924511 ACAATGCTTGCTTTATACCATATACT 57.075 30.769 0.00 0.00 0.00 2.12
3862 9664 7.948278 TCTTTCTCTCTTAACAAAGTAGTGC 57.052 36.000 0.00 0.00 0.00 4.40
4001 9803 4.142491 TGTCCGAATTATGGATGTTTGTGC 60.142 41.667 2.46 0.00 37.93 4.57
4031 9833 4.827284 ACTTCTTACTTGGTGTCCATTTGG 59.173 41.667 0.00 0.00 31.53 3.28
4082 9886 9.141400 GCCGTTATAAGTTATCTAAGAAGATGG 57.859 37.037 0.00 0.00 42.60 3.51
4105 9909 1.446272 GTTCTGGAGAACGGAGCCG 60.446 63.158 7.48 7.48 43.97 5.52
4217 10021 7.093201 TGGTAGTGGTAACTAGGGTTAAATGAG 60.093 40.741 0.00 0.00 39.60 2.90
4218 10022 6.730038 TGGTAGTGGTAACTAGGGTTAAATGA 59.270 38.462 0.00 0.00 39.60 2.57
4219 10023 6.820152 GTGGTAGTGGTAACTAGGGTTAAATG 59.180 42.308 0.00 0.00 39.60 2.32
4220 10024 6.732390 AGTGGTAGTGGTAACTAGGGTTAAAT 59.268 38.462 0.00 0.00 39.60 1.40
4273 10108 1.425066 TGCAGAATTCAGTTCAGGGGT 59.575 47.619 8.44 0.00 39.39 4.95
4343 10182 3.268330 GGACCAGGATTCCGTACTTTTC 58.732 50.000 0.00 0.00 0.00 2.29
4381 10220 4.023980 CCTCAGTTCCACTGGACTATGTA 58.976 47.826 0.00 0.00 45.94 2.29
4416 10255 1.068748 CAAGATGGACTGCTGCAACAC 60.069 52.381 3.02 0.00 0.00 3.32
4426 10271 2.749621 GGCAAATCGTTCAAGATGGACT 59.250 45.455 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.