Multiple sequence alignment - TraesCS2B01G384400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G384400 chr2B 100.000 7134 0 0 1 7134 548381066 548388199 0.000000e+00 13175.0
1 TraesCS2B01G384400 chr2B 94.040 151 4 3 6985 7134 27906908 27907054 2.590000e-54 224.0
2 TraesCS2B01G384400 chr2A 92.098 5581 263 76 368 5863 611098961 611104448 0.000000e+00 7699.0
3 TraesCS2B01G384400 chr2A 91.393 1220 58 28 5788 6985 611104526 611105720 0.000000e+00 1628.0
4 TraesCS2B01G384400 chr2A 83.951 81 10 3 93 171 714214016 714213937 2.760000e-09 75.0
5 TraesCS2B01G384400 chr2D 92.003 3101 159 25 524 3572 469732305 469735368 0.000000e+00 4270.0
6 TraesCS2B01G384400 chr2D 95.204 2523 67 22 3932 6429 469735378 469737871 0.000000e+00 3940.0
7 TraesCS2B01G384400 chr2D 91.291 333 18 6 6462 6785 469737877 469738207 1.830000e-120 444.0
8 TraesCS2B01G384400 chr2D 87.500 72 7 2 1867 1937 469733742 469733812 1.650000e-11 82.4
9 TraesCS2B01G384400 chr7B 96.026 151 1 3 6985 7134 583624495 583624349 2.570000e-59 241.0
10 TraesCS2B01G384400 chr7B 95.364 151 2 3 6985 7134 548474183 548474329 1.200000e-57 235.0
11 TraesCS2B01G384400 chr7B 79.514 288 53 5 43 327 13246334 13246050 4.360000e-47 200.0
12 TraesCS2B01G384400 chr7B 91.209 91 6 2 3680 3768 409499713 409499623 9.720000e-24 122.0
13 TraesCS2B01G384400 chr3D 95.364 151 2 3 6985 7134 162874752 162874898 1.200000e-57 235.0
14 TraesCS2B01G384400 chr3D 91.398 93 6 2 3680 3770 543101051 543100959 7.510000e-25 126.0
15 TraesCS2B01G384400 chr3D 92.045 88 5 2 3680 3765 30157088 30157175 9.720000e-24 122.0
16 TraesCS2B01G384400 chr5B 94.702 151 3 3 6985 7134 548980191 548980045 5.570000e-56 230.0
17 TraesCS2B01G384400 chr5B 94.040 151 4 3 6985 7134 582155861 582156007 2.590000e-54 224.0
18 TraesCS2B01G384400 chr5A 94.667 150 3 3 6985 7133 512711025 512711170 2.000000e-55 228.0
19 TraesCS2B01G384400 chr5A 82.915 199 23 7 57 255 461851390 461851203 1.230000e-37 169.0
20 TraesCS2B01G384400 chr5D 82.869 251 39 4 57 306 521874415 521874662 9.310000e-54 222.0
21 TraesCS2B01G384400 chr7A 93.421 152 4 4 6985 7134 167819185 167819332 3.350000e-53 220.0
22 TraesCS2B01G384400 chr1A 93.377 151 5 3 6985 7134 498538490 498538344 1.200000e-52 219.0
23 TraesCS2B01G384400 chr1A 87.500 80 9 1 177 256 569273729 569273651 2.740000e-14 91.6
24 TraesCS2B01G384400 chr1A 94.118 34 2 0 5887 5920 306682985 306682952 1.300000e-02 52.8
25 TraesCS2B01G384400 chr1A 100.000 28 0 0 5887 5914 347323116 347323143 1.300000e-02 52.8
26 TraesCS2B01G384400 chr1A 94.118 34 2 0 5887 5920 478625944 478625911 1.300000e-02 52.8
27 TraesCS2B01G384400 chr1B 86.111 180 21 4 24 200 112338340 112338518 2.630000e-44 191.0
28 TraesCS2B01G384400 chr1B 93.182 88 4 2 3680 3765 301685803 301685890 2.090000e-25 128.0
29 TraesCS2B01G384400 chr1B 91.209 91 6 2 3680 3768 34446605 34446515 9.720000e-24 122.0
30 TraesCS2B01G384400 chr7D 80.000 180 32 4 56 233 56512993 56513170 5.810000e-26 130.0
31 TraesCS2B01G384400 chr7D 81.013 158 28 2 43 200 56496634 56496789 2.700000e-24 124.0
32 TraesCS2B01G384400 chr7D 94.118 34 2 0 5887 5920 452969883 452969850 1.300000e-02 52.8
33 TraesCS2B01G384400 chr4B 92.308 91 5 2 3682 3770 134121279 134121189 2.090000e-25 128.0
34 TraesCS2B01G384400 chr6B 91.304 92 6 2 3681 3770 314581273 314581182 2.700000e-24 124.0
35 TraesCS2B01G384400 chr6B 87.000 100 12 1 90 188 445013935 445013836 2.100000e-20 111.0
36 TraesCS2B01G384400 chr6B 100.000 32 0 0 5887 5918 258013283 258013252 7.730000e-05 60.2
37 TraesCS2B01G384400 chr6D 90.426 94 7 2 3679 3770 229422027 229421934 9.720000e-24 122.0
38 TraesCS2B01G384400 chr6D 100.000 34 0 0 5887 5920 147149350 147149383 5.970000e-06 63.9
39 TraesCS2B01G384400 chr4A 90.541 74 6 1 183 256 236503864 236503792 5.890000e-16 97.1
40 TraesCS2B01G384400 chr3A 86.957 69 8 1 177 245 695215979 695216046 7.670000e-10 76.8
41 TraesCS2B01G384400 chr6A 100.000 34 0 0 5887 5920 200254532 200254499 5.970000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G384400 chr2B 548381066 548388199 7133 False 13175.0 13175 100.0000 1 7134 1 chr2B.!!$F2 7133
1 TraesCS2B01G384400 chr2A 611098961 611105720 6759 False 4663.5 7699 91.7455 368 6985 2 chr2A.!!$F1 6617
2 TraesCS2B01G384400 chr2D 469732305 469738207 5902 False 2184.1 4270 91.4995 524 6785 4 chr2D.!!$F1 6261

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 347 0.032515 TGGGAGGTGAGGCGAGATTA 60.033 55.000 0.00 0.00 0.00 1.75 F
599 602 0.251608 CCACTTTTTCCGGGACCCAT 60.252 55.000 12.15 0.00 0.00 4.00 F
1360 1374 0.100503 GCCGTGTTTCTGCTGTGTTT 59.899 50.000 0.00 0.00 0.00 2.83 F
1655 1703 0.108963 TGTTTCGTAGGGGTGTTGGG 59.891 55.000 0.00 0.00 0.00 4.12 F
3409 3469 0.468226 TCGAACTTGGGCACTTGTCT 59.532 50.000 0.00 0.00 0.00 3.41 F
3757 3824 0.240945 ACCAAAGCGCACACTTATGC 59.759 50.000 11.47 0.00 42.48 3.14 F
3798 3876 0.611200 TGAGCCTAGGCGCACTTAAA 59.389 50.000 33.26 12.31 45.33 1.52 F
4005 4096 1.894978 GCCAAGAATAAGCCCCACCAA 60.895 52.381 0.00 0.00 0.00 3.67 F
5711 5821 0.894141 TGTGCCAACTGTTGCTGTTT 59.106 45.000 14.94 0.00 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1334 1348 0.109597 GCAGAAACACGGCCAGATTG 60.110 55.000 2.24 0.0 33.80 2.67 R
1402 1424 0.470456 ACCACCCAGTTGTACTCGGA 60.470 55.000 0.00 0.0 30.52 4.55 R
3162 3221 0.322187 TTTGCTTAGGCGGTTCTCCC 60.322 55.000 0.00 0.0 42.25 4.30 R
3580 3643 0.322546 GTGGTAAAGGGCAGAGGGTG 60.323 60.000 0.00 0.0 0.00 4.61 R
4307 4413 0.177373 CAGCAGATGGACAGCTAGCA 59.823 55.000 18.83 0.0 39.28 3.49 R
4914 5023 2.945456 AGGAAACCCAACAAGAGGAAC 58.055 47.619 0.00 0.0 0.00 3.62 R
4920 5029 5.912892 ACACAAATTAGGAAACCCAACAAG 58.087 37.500 0.00 0.0 0.00 3.16 R
5824 5934 4.455877 GGGTACTTGACAGTGGAGAAATTG 59.544 45.833 0.00 0.0 34.06 2.32 R
6769 7067 0.454600 AGCCGTGTGTATGTCTACCG 59.545 55.000 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.969136 ACTTCCCCTTTAGGAGTAGAGA 57.031 45.455 0.00 0.00 37.20 3.10
22 23 5.490995 ACTTCCCCTTTAGGAGTAGAGAT 57.509 43.478 0.00 0.00 37.20 2.75
23 24 5.212745 ACTTCCCCTTTAGGAGTAGAGATG 58.787 45.833 0.00 0.00 37.20 2.90
24 25 5.043281 ACTTCCCCTTTAGGAGTAGAGATGA 60.043 44.000 0.00 0.00 37.20 2.92
25 26 5.483174 TCCCCTTTAGGAGTAGAGATGAA 57.517 43.478 0.00 0.00 38.24 2.57
26 27 5.850278 TCCCCTTTAGGAGTAGAGATGAAA 58.150 41.667 0.00 0.00 38.24 2.69
27 28 5.661759 TCCCCTTTAGGAGTAGAGATGAAAC 59.338 44.000 0.00 0.00 38.24 2.78
28 29 5.663556 CCCCTTTAGGAGTAGAGATGAAACT 59.336 44.000 0.00 0.00 38.24 2.66
29 30 6.839657 CCCCTTTAGGAGTAGAGATGAAACTA 59.160 42.308 0.00 0.00 38.24 2.24
30 31 7.344871 CCCCTTTAGGAGTAGAGATGAAACTAA 59.655 40.741 0.00 0.00 38.24 2.24
31 32 8.759782 CCCTTTAGGAGTAGAGATGAAACTAAA 58.240 37.037 0.00 0.00 38.24 1.85
37 38 9.315363 AGGAGTAGAGATGAAACTAAAAGAAGA 57.685 33.333 0.00 0.00 0.00 2.87
38 39 9.930693 GGAGTAGAGATGAAACTAAAAGAAGAA 57.069 33.333 0.00 0.00 0.00 2.52
56 57 9.537848 AAAGAAGAAACTAAAATATAACGCACG 57.462 29.630 0.00 0.00 0.00 5.34
57 58 7.178074 AGAAGAAACTAAAATATAACGCACGC 58.822 34.615 0.00 0.00 0.00 5.34
58 59 6.411630 AGAAACTAAAATATAACGCACGCA 57.588 33.333 0.00 0.00 0.00 5.24
59 60 6.245724 AGAAACTAAAATATAACGCACGCAC 58.754 36.000 0.00 0.00 0.00 5.34
60 61 4.172796 ACTAAAATATAACGCACGCACG 57.827 40.909 0.00 0.00 39.50 5.34
61 62 1.805286 AAAATATAACGCACGCACGC 58.195 45.000 0.00 0.00 36.19 5.34
72 73 3.722295 CGCACGCGTCAAATGGGT 61.722 61.111 9.86 0.00 34.35 4.51
73 74 2.175811 GCACGCGTCAAATGGGTC 59.824 61.111 9.86 0.00 0.00 4.46
74 75 2.474266 CACGCGTCAAATGGGTCG 59.526 61.111 9.86 0.00 0.00 4.79
75 76 2.740826 ACGCGTCAAATGGGTCGG 60.741 61.111 5.58 0.00 0.00 4.79
76 77 4.160635 CGCGTCAAATGGGTCGGC 62.161 66.667 0.00 0.00 0.00 5.54
77 78 3.810896 GCGTCAAATGGGTCGGCC 61.811 66.667 0.00 0.00 0.00 6.13
78 79 2.359354 CGTCAAATGGGTCGGCCA 60.359 61.111 9.07 0.00 36.17 5.36
79 80 1.969064 CGTCAAATGGGTCGGCCAA 60.969 57.895 9.07 0.00 36.17 4.52
80 81 1.519751 CGTCAAATGGGTCGGCCAAA 61.520 55.000 9.07 0.00 36.17 3.28
81 82 0.894835 GTCAAATGGGTCGGCCAAAT 59.105 50.000 9.07 0.00 36.17 2.32
82 83 1.275010 GTCAAATGGGTCGGCCAAATT 59.725 47.619 9.07 4.09 36.17 1.82
83 84 1.974236 TCAAATGGGTCGGCCAAATTT 59.026 42.857 9.07 10.85 34.73 1.82
84 85 3.056465 GTCAAATGGGTCGGCCAAATTTA 60.056 43.478 16.00 5.51 33.50 1.40
85 86 3.578716 TCAAATGGGTCGGCCAAATTTAA 59.421 39.130 16.00 2.48 33.50 1.52
86 87 4.223923 TCAAATGGGTCGGCCAAATTTAAT 59.776 37.500 16.00 0.00 33.50 1.40
87 88 4.835284 AATGGGTCGGCCAAATTTAATT 57.165 36.364 9.07 0.00 36.17 1.40
88 89 5.941555 AATGGGTCGGCCAAATTTAATTA 57.058 34.783 9.07 0.00 36.17 1.40
89 90 6.493189 AATGGGTCGGCCAAATTTAATTAT 57.507 33.333 9.07 0.00 36.17 1.28
90 91 5.941555 TGGGTCGGCCAAATTTAATTATT 57.058 34.783 9.07 0.00 36.17 1.40
91 92 7.604657 ATGGGTCGGCCAAATTTAATTATTA 57.395 32.000 9.07 0.00 36.17 0.98
92 93 7.604657 TGGGTCGGCCAAATTTAATTATTAT 57.395 32.000 9.07 0.00 36.17 1.28
93 94 8.024145 TGGGTCGGCCAAATTTAATTATTATT 57.976 30.769 9.07 0.00 36.17 1.40
94 95 7.928706 TGGGTCGGCCAAATTTAATTATTATTG 59.071 33.333 9.07 0.00 36.17 1.90
95 96 8.145122 GGGTCGGCCAAATTTAATTATTATTGA 58.855 33.333 9.07 0.00 36.17 2.57
96 97 9.705290 GGTCGGCCAAATTTAATTATTATTGAT 57.295 29.630 0.00 0.00 34.09 2.57
141 142 9.817809 TTGATTTGTATATGAGTAGTGGAAGAC 57.182 33.333 0.00 0.00 0.00 3.01
142 143 8.977412 TGATTTGTATATGAGTAGTGGAAGACA 58.023 33.333 0.00 0.00 0.00 3.41
143 144 9.817809 GATTTGTATATGAGTAGTGGAAGACAA 57.182 33.333 0.00 0.00 0.00 3.18
144 145 9.823647 ATTTGTATATGAGTAGTGGAAGACAAG 57.176 33.333 0.00 0.00 0.00 3.16
145 146 7.348080 TGTATATGAGTAGTGGAAGACAAGG 57.652 40.000 0.00 0.00 0.00 3.61
146 147 7.123383 TGTATATGAGTAGTGGAAGACAAGGA 58.877 38.462 0.00 0.00 0.00 3.36
147 148 7.618117 TGTATATGAGTAGTGGAAGACAAGGAA 59.382 37.037 0.00 0.00 0.00 3.36
148 149 5.825593 ATGAGTAGTGGAAGACAAGGAAA 57.174 39.130 0.00 0.00 0.00 3.13
149 150 5.215252 TGAGTAGTGGAAGACAAGGAAAG 57.785 43.478 0.00 0.00 0.00 2.62
150 151 4.654262 TGAGTAGTGGAAGACAAGGAAAGT 59.346 41.667 0.00 0.00 0.00 2.66
151 152 5.130477 TGAGTAGTGGAAGACAAGGAAAGTT 59.870 40.000 0.00 0.00 0.00 2.66
152 153 5.612351 AGTAGTGGAAGACAAGGAAAGTTC 58.388 41.667 0.00 0.00 0.00 3.01
153 154 4.503714 AGTGGAAGACAAGGAAAGTTCA 57.496 40.909 0.00 0.00 0.00 3.18
154 155 4.455606 AGTGGAAGACAAGGAAAGTTCAG 58.544 43.478 0.00 0.00 0.00 3.02
155 156 4.164221 AGTGGAAGACAAGGAAAGTTCAGA 59.836 41.667 0.00 0.00 0.00 3.27
156 157 5.066593 GTGGAAGACAAGGAAAGTTCAGAT 58.933 41.667 0.00 0.00 0.00 2.90
157 158 5.532779 GTGGAAGACAAGGAAAGTTCAGATT 59.467 40.000 0.00 0.00 0.00 2.40
158 159 6.039829 GTGGAAGACAAGGAAAGTTCAGATTT 59.960 38.462 0.00 0.00 0.00 2.17
159 160 7.228706 GTGGAAGACAAGGAAAGTTCAGATTTA 59.771 37.037 0.00 0.00 0.00 1.40
160 161 7.777910 TGGAAGACAAGGAAAGTTCAGATTTAA 59.222 33.333 0.00 0.00 0.00 1.52
161 162 8.797438 GGAAGACAAGGAAAGTTCAGATTTAAT 58.203 33.333 0.00 0.00 0.00 1.40
163 164 9.971922 AAGACAAGGAAAGTTCAGATTTAATTG 57.028 29.630 0.00 0.00 0.00 2.32
164 165 9.354673 AGACAAGGAAAGTTCAGATTTAATTGA 57.645 29.630 0.00 0.00 0.00 2.57
165 166 9.617975 GACAAGGAAAGTTCAGATTTAATTGAG 57.382 33.333 0.00 0.00 0.00 3.02
166 167 9.354673 ACAAGGAAAGTTCAGATTTAATTGAGA 57.645 29.630 0.00 0.00 0.00 3.27
200 201 7.637229 AGATCTGATTTGAATGAGTTAATGCG 58.363 34.615 0.00 0.00 0.00 4.73
201 202 6.741992 TCTGATTTGAATGAGTTAATGCGT 57.258 33.333 0.00 0.00 0.00 5.24
202 203 6.545508 TCTGATTTGAATGAGTTAATGCGTG 58.454 36.000 0.00 0.00 0.00 5.34
203 204 6.371271 TCTGATTTGAATGAGTTAATGCGTGA 59.629 34.615 0.00 0.00 0.00 4.35
204 205 6.314018 TGATTTGAATGAGTTAATGCGTGAC 58.686 36.000 0.00 0.00 0.00 3.67
205 206 5.681337 TTTGAATGAGTTAATGCGTGACA 57.319 34.783 0.00 0.00 0.00 3.58
206 207 5.878332 TTGAATGAGTTAATGCGTGACAT 57.122 34.783 0.00 0.00 42.30 3.06
219 220 6.949578 ATGCGTGACATTATTTTTGGAAAG 57.050 33.333 0.00 0.00 34.40 2.62
220 221 5.837437 TGCGTGACATTATTTTTGGAAAGT 58.163 33.333 0.00 0.00 0.00 2.66
221 222 5.689514 TGCGTGACATTATTTTTGGAAAGTG 59.310 36.000 0.00 0.00 0.00 3.16
222 223 5.689961 GCGTGACATTATTTTTGGAAAGTGT 59.310 36.000 0.00 0.00 0.00 3.55
223 224 6.129194 GCGTGACATTATTTTTGGAAAGTGTC 60.129 38.462 0.00 0.00 36.79 3.67
224 225 6.086241 CGTGACATTATTTTTGGAAAGTGTCG 59.914 38.462 0.00 0.00 37.83 4.35
225 226 7.136119 GTGACATTATTTTTGGAAAGTGTCGA 58.864 34.615 0.00 0.00 37.83 4.20
226 227 7.807907 GTGACATTATTTTTGGAAAGTGTCGAT 59.192 33.333 0.00 0.00 37.83 3.59
227 228 8.356657 TGACATTATTTTTGGAAAGTGTCGATT 58.643 29.630 0.00 0.00 37.83 3.34
228 229 9.191995 GACATTATTTTTGGAAAGTGTCGATTT 57.808 29.630 0.00 0.00 31.79 2.17
229 230 8.977505 ACATTATTTTTGGAAAGTGTCGATTTG 58.022 29.630 0.00 0.00 0.00 2.32
230 231 7.938563 TTATTTTTGGAAAGTGTCGATTTGG 57.061 32.000 0.00 0.00 0.00 3.28
231 232 4.993029 TTTTGGAAAGTGTCGATTTGGT 57.007 36.364 0.00 0.00 0.00 3.67
232 233 4.993029 TTTGGAAAGTGTCGATTTGGTT 57.007 36.364 0.00 0.00 0.00 3.67
233 234 3.980646 TGGAAAGTGTCGATTTGGTTG 57.019 42.857 0.00 0.00 0.00 3.77
234 235 3.546724 TGGAAAGTGTCGATTTGGTTGA 58.453 40.909 0.00 0.00 0.00 3.18
235 236 3.563808 TGGAAAGTGTCGATTTGGTTGAG 59.436 43.478 0.00 0.00 0.00 3.02
236 237 3.564225 GGAAAGTGTCGATTTGGTTGAGT 59.436 43.478 0.00 0.00 0.00 3.41
237 238 4.036380 GGAAAGTGTCGATTTGGTTGAGTT 59.964 41.667 0.00 0.00 0.00 3.01
238 239 5.237779 GGAAAGTGTCGATTTGGTTGAGTTA 59.762 40.000 0.00 0.00 0.00 2.24
239 240 6.238538 GGAAAGTGTCGATTTGGTTGAGTTAA 60.239 38.462 0.00 0.00 0.00 2.01
240 241 6.877611 AAGTGTCGATTTGGTTGAGTTAAT 57.122 33.333 0.00 0.00 0.00 1.40
241 242 6.241207 AGTGTCGATTTGGTTGAGTTAATG 57.759 37.500 0.00 0.00 0.00 1.90
242 243 4.851558 GTGTCGATTTGGTTGAGTTAATGC 59.148 41.667 0.00 0.00 0.00 3.56
243 244 4.517075 TGTCGATTTGGTTGAGTTAATGCA 59.483 37.500 0.00 0.00 0.00 3.96
244 245 4.851558 GTCGATTTGGTTGAGTTAATGCAC 59.148 41.667 0.00 0.00 0.00 4.57
245 246 3.845775 CGATTTGGTTGAGTTAATGCACG 59.154 43.478 0.00 0.00 0.00 5.34
246 247 2.697431 TTGGTTGAGTTAATGCACGC 57.303 45.000 0.00 0.00 0.00 5.34
247 248 0.515127 TGGTTGAGTTAATGCACGCG 59.485 50.000 3.53 3.53 0.00 6.01
248 249 0.515564 GGTTGAGTTAATGCACGCGT 59.484 50.000 5.58 5.58 0.00 6.01
249 250 1.069500 GGTTGAGTTAATGCACGCGTT 60.069 47.619 10.22 0.00 0.00 4.84
250 251 2.158058 GGTTGAGTTAATGCACGCGTTA 59.842 45.455 10.22 1.08 0.00 3.18
251 252 3.364167 GGTTGAGTTAATGCACGCGTTAA 60.364 43.478 10.22 11.45 35.71 2.01
252 253 4.212911 GTTGAGTTAATGCACGCGTTAAA 58.787 39.130 10.22 0.00 38.59 1.52
253 254 4.671880 TGAGTTAATGCACGCGTTAAAT 57.328 36.364 10.22 15.22 38.59 1.40
254 255 4.399112 TGAGTTAATGCACGCGTTAAATG 58.601 39.130 18.27 0.00 38.59 2.32
255 256 3.753842 AGTTAATGCACGCGTTAAATGG 58.246 40.909 10.22 0.00 38.59 3.16
256 257 3.437395 AGTTAATGCACGCGTTAAATGGA 59.563 39.130 10.22 0.00 38.59 3.41
257 258 4.095782 AGTTAATGCACGCGTTAAATGGAT 59.904 37.500 10.22 0.94 38.59 3.41
258 259 2.755836 ATGCACGCGTTAAATGGATC 57.244 45.000 10.22 0.00 0.00 3.36
259 260 0.371989 TGCACGCGTTAAATGGATCG 59.628 50.000 10.22 0.00 0.00 3.69
260 261 0.315869 GCACGCGTTAAATGGATCGG 60.316 55.000 10.22 0.00 0.00 4.18
261 262 0.315869 CACGCGTTAAATGGATCGGC 60.316 55.000 10.22 0.00 0.00 5.54
262 263 1.278637 CGCGTTAAATGGATCGGCC 59.721 57.895 0.00 0.00 37.10 6.13
263 264 1.652563 GCGTTAAATGGATCGGCCC 59.347 57.895 0.00 0.00 34.97 5.80
264 265 1.098712 GCGTTAAATGGATCGGCCCA 61.099 55.000 0.00 0.00 41.05 5.36
266 267 1.266718 CGTTAAATGGATCGGCCCATG 59.733 52.381 9.67 0.00 45.69 3.66
267 268 2.306847 GTTAAATGGATCGGCCCATGT 58.693 47.619 9.67 7.40 45.69 3.21
268 269 2.693074 GTTAAATGGATCGGCCCATGTT 59.307 45.455 9.67 8.83 45.69 2.71
269 270 2.746279 AAATGGATCGGCCCATGTTA 57.254 45.000 9.67 0.00 45.69 2.41
270 271 2.276732 AATGGATCGGCCCATGTTAG 57.723 50.000 9.67 0.00 45.69 2.34
271 272 1.140312 ATGGATCGGCCCATGTTAGT 58.860 50.000 0.00 0.00 44.77 2.24
272 273 0.468226 TGGATCGGCCCATGTTAGTC 59.532 55.000 0.00 0.00 34.97 2.59
273 274 0.468226 GGATCGGCCCATGTTAGTCA 59.532 55.000 0.00 0.00 0.00 3.41
274 275 1.072331 GGATCGGCCCATGTTAGTCAT 59.928 52.381 0.00 0.00 37.22 3.06
286 287 6.732531 CATGTTAGTCATGCTTGAGAGAAA 57.267 37.500 1.91 0.00 45.69 2.52
287 288 6.773080 CATGTTAGTCATGCTTGAGAGAAAG 58.227 40.000 1.91 0.00 45.69 2.62
288 289 5.240891 TGTTAGTCATGCTTGAGAGAAAGG 58.759 41.667 1.91 0.00 30.85 3.11
289 290 5.221722 TGTTAGTCATGCTTGAGAGAAAGGT 60.222 40.000 1.91 0.00 30.85 3.50
290 291 3.936564 AGTCATGCTTGAGAGAAAGGTC 58.063 45.455 1.91 0.00 30.85 3.85
291 292 2.670414 GTCATGCTTGAGAGAAAGGTCG 59.330 50.000 1.91 0.00 30.85 4.79
292 293 1.396301 CATGCTTGAGAGAAAGGTCGC 59.604 52.381 0.00 0.00 0.00 5.19
293 294 0.320771 TGCTTGAGAGAAAGGTCGCC 60.321 55.000 0.00 0.00 0.00 5.54
294 295 0.036858 GCTTGAGAGAAAGGTCGCCT 60.037 55.000 0.00 0.00 33.87 5.52
295 296 1.719600 CTTGAGAGAAAGGTCGCCTG 58.280 55.000 0.00 0.00 32.13 4.85
296 297 1.001406 CTTGAGAGAAAGGTCGCCTGT 59.999 52.381 0.00 0.00 32.13 4.00
297 298 1.919240 TGAGAGAAAGGTCGCCTGTA 58.081 50.000 0.00 0.00 32.13 2.74
298 299 2.244695 TGAGAGAAAGGTCGCCTGTAA 58.755 47.619 0.00 0.00 32.13 2.41
299 300 2.231478 TGAGAGAAAGGTCGCCTGTAAG 59.769 50.000 0.00 0.00 32.13 2.34
311 312 1.717937 CTGTAAGGCGCTCACATGC 59.282 57.895 7.64 0.00 0.00 4.06
326 327 7.594824 GCTCACATGCGTAATATAAGTTTTG 57.405 36.000 0.00 0.00 0.00 2.44
327 328 7.186804 GCTCACATGCGTAATATAAGTTTTGT 58.813 34.615 0.00 0.00 0.00 2.83
328 329 7.164171 GCTCACATGCGTAATATAAGTTTTGTG 59.836 37.037 0.00 0.00 33.77 3.33
329 330 7.468441 TCACATGCGTAATATAAGTTTTGTGG 58.532 34.615 0.00 0.00 33.41 4.17
330 331 6.690957 CACATGCGTAATATAAGTTTTGTGGG 59.309 38.462 0.00 0.00 0.00 4.61
331 332 6.600032 ACATGCGTAATATAAGTTTTGTGGGA 59.400 34.615 0.00 0.00 0.00 4.37
332 333 6.671614 TGCGTAATATAAGTTTTGTGGGAG 57.328 37.500 0.00 0.00 0.00 4.30
333 334 5.587043 TGCGTAATATAAGTTTTGTGGGAGG 59.413 40.000 0.00 0.00 0.00 4.30
334 335 5.587443 GCGTAATATAAGTTTTGTGGGAGGT 59.413 40.000 0.00 0.00 0.00 3.85
335 336 6.457799 GCGTAATATAAGTTTTGTGGGAGGTG 60.458 42.308 0.00 0.00 0.00 4.00
336 337 6.819649 CGTAATATAAGTTTTGTGGGAGGTGA 59.180 38.462 0.00 0.00 0.00 4.02
337 338 7.011109 CGTAATATAAGTTTTGTGGGAGGTGAG 59.989 40.741 0.00 0.00 0.00 3.51
338 339 2.364972 AAGTTTTGTGGGAGGTGAGG 57.635 50.000 0.00 0.00 0.00 3.86
339 340 0.178990 AGTTTTGTGGGAGGTGAGGC 60.179 55.000 0.00 0.00 0.00 4.70
340 341 1.228124 TTTTGTGGGAGGTGAGGCG 60.228 57.895 0.00 0.00 0.00 5.52
341 342 1.701031 TTTTGTGGGAGGTGAGGCGA 61.701 55.000 0.00 0.00 0.00 5.54
342 343 2.111999 TTTGTGGGAGGTGAGGCGAG 62.112 60.000 0.00 0.00 0.00 5.03
343 344 2.680352 GTGGGAGGTGAGGCGAGA 60.680 66.667 0.00 0.00 0.00 4.04
344 345 2.060980 GTGGGAGGTGAGGCGAGAT 61.061 63.158 0.00 0.00 0.00 2.75
345 346 1.306141 TGGGAGGTGAGGCGAGATT 60.306 57.895 0.00 0.00 0.00 2.40
346 347 0.032515 TGGGAGGTGAGGCGAGATTA 60.033 55.000 0.00 0.00 0.00 1.75
347 348 1.343069 GGGAGGTGAGGCGAGATTAT 58.657 55.000 0.00 0.00 0.00 1.28
348 349 1.273886 GGGAGGTGAGGCGAGATTATC 59.726 57.143 0.00 0.00 0.00 1.75
349 350 1.964223 GGAGGTGAGGCGAGATTATCA 59.036 52.381 0.00 0.00 0.00 2.15
350 351 2.365617 GGAGGTGAGGCGAGATTATCAA 59.634 50.000 0.00 0.00 0.00 2.57
351 352 3.385577 GAGGTGAGGCGAGATTATCAAC 58.614 50.000 0.00 0.00 0.00 3.18
352 353 2.766263 AGGTGAGGCGAGATTATCAACA 59.234 45.455 0.00 0.00 31.65 3.33
353 354 2.866762 GGTGAGGCGAGATTATCAACAC 59.133 50.000 0.00 0.00 29.64 3.32
354 355 3.521560 GTGAGGCGAGATTATCAACACA 58.478 45.455 0.00 0.00 0.00 3.72
355 356 4.122776 GTGAGGCGAGATTATCAACACAT 58.877 43.478 0.00 0.00 0.00 3.21
356 357 5.289595 GTGAGGCGAGATTATCAACACATA 58.710 41.667 0.00 0.00 0.00 2.29
357 358 5.403766 GTGAGGCGAGATTATCAACACATAG 59.596 44.000 0.00 0.00 0.00 2.23
358 359 4.887748 AGGCGAGATTATCAACACATAGG 58.112 43.478 0.00 0.00 0.00 2.57
359 360 4.588951 AGGCGAGATTATCAACACATAGGA 59.411 41.667 0.00 0.00 0.00 2.94
360 361 4.926238 GGCGAGATTATCAACACATAGGAG 59.074 45.833 0.00 0.00 0.00 3.69
361 362 5.509840 GGCGAGATTATCAACACATAGGAGT 60.510 44.000 0.00 0.00 0.00 3.85
362 363 5.403766 GCGAGATTATCAACACATAGGAGTG 59.596 44.000 0.00 0.00 44.93 3.51
363 364 5.923114 CGAGATTATCAACACATAGGAGTGG 59.077 44.000 0.00 0.00 43.72 4.00
364 365 6.239036 CGAGATTATCAACACATAGGAGTGGA 60.239 42.308 0.00 0.00 43.72 4.02
365 366 7.524532 CGAGATTATCAACACATAGGAGTGGAT 60.525 40.741 0.56 0.56 43.72 3.41
366 367 8.038862 AGATTATCAACACATAGGAGTGGATT 57.961 34.615 0.10 0.00 43.72 3.01
451 452 0.521735 GTGGAACGATGTTCCCAAGC 59.478 55.000 22.29 9.22 37.79 4.01
475 476 2.297701 GCGTCCAATATCACACCCAAT 58.702 47.619 0.00 0.00 0.00 3.16
480 481 5.804979 CGTCCAATATCACACCCAATTTTTC 59.195 40.000 0.00 0.00 0.00 2.29
491 492 3.951680 ACCCAATTTTTCGTGAGTGAACT 59.048 39.130 0.00 0.00 0.00 3.01
588 591 1.112916 CCCCTGCGGAACCACTTTTT 61.113 55.000 0.00 0.00 0.00 1.94
599 602 0.251608 CCACTTTTTCCGGGACCCAT 60.252 55.000 12.15 0.00 0.00 4.00
602 605 0.331616 CTTTTTCCGGGACCCATCCT 59.668 55.000 12.15 0.00 45.46 3.24
604 607 1.906105 TTTTCCGGGACCCATCCTCG 61.906 60.000 12.15 0.00 45.46 4.63
644 648 4.612412 GACCGACCGCAACCACCA 62.612 66.667 0.00 0.00 0.00 4.17
670 674 2.970324 GCGCGACTTGACCAACCA 60.970 61.111 12.10 0.00 0.00 3.67
735 740 3.408634 CGAAAGGAGGAAGGCAGTAAAA 58.591 45.455 0.00 0.00 0.00 1.52
737 742 4.320275 CGAAAGGAGGAAGGCAGTAAAAAC 60.320 45.833 0.00 0.00 0.00 2.43
738 743 3.876309 AGGAGGAAGGCAGTAAAAACA 57.124 42.857 0.00 0.00 0.00 2.83
739 744 4.388577 AGGAGGAAGGCAGTAAAAACAT 57.611 40.909 0.00 0.00 0.00 2.71
1005 1019 2.749839 TTTTCGCCGGCCATGGAG 60.750 61.111 23.46 8.43 0.00 3.86
1200 1214 0.252742 AGGTGGGGTCCTACTTCCTG 60.253 60.000 3.59 0.00 35.87 3.86
1203 1217 2.732619 GGGGTCCTACTTCCTGGCG 61.733 68.421 0.00 0.00 0.00 5.69
1206 1220 2.365105 TCCTACTTCCTGGCGGGG 60.365 66.667 13.58 0.54 35.33 5.73
1257 1271 3.838795 GCGCGGCAGTTCTACACG 61.839 66.667 8.83 0.00 0.00 4.49
1258 1272 3.179265 CGCGGCAGTTCTACACGG 61.179 66.667 0.00 0.00 0.00 4.94
1344 1358 0.182537 TATGAACCCCAATCTGGCCG 59.817 55.000 0.00 0.00 35.79 6.13
1354 1368 0.250901 AATCTGGCCGTGTTTCTGCT 60.251 50.000 0.00 0.00 0.00 4.24
1355 1369 0.957395 ATCTGGCCGTGTTTCTGCTG 60.957 55.000 0.00 0.00 0.00 4.41
1357 1371 2.121564 CTGGCCGTGTTTCTGCTGTG 62.122 60.000 0.00 0.00 0.00 3.66
1358 1372 2.186826 GGCCGTGTTTCTGCTGTGT 61.187 57.895 0.00 0.00 0.00 3.72
1360 1374 0.100503 GCCGTGTTTCTGCTGTGTTT 59.899 50.000 0.00 0.00 0.00 2.83
1361 1375 1.332375 GCCGTGTTTCTGCTGTGTTTA 59.668 47.619 0.00 0.00 0.00 2.01
1362 1376 2.853281 GCCGTGTTTCTGCTGTGTTTAC 60.853 50.000 0.00 0.00 0.00 2.01
1363 1377 2.612212 CCGTGTTTCTGCTGTGTTTACT 59.388 45.455 0.00 0.00 0.00 2.24
1373 1395 2.956333 GCTGTGTTTACTTCCCTTTGGT 59.044 45.455 0.00 0.00 0.00 3.67
1380 1402 0.988832 ACTTCCCTTTGGTGCCGATA 59.011 50.000 0.00 0.00 0.00 2.92
1381 1403 1.065418 ACTTCCCTTTGGTGCCGATAG 60.065 52.381 0.00 0.00 0.00 2.08
1386 1408 2.643551 CCTTTGGTGCCGATAGTCATT 58.356 47.619 0.00 0.00 0.00 2.57
1402 1424 1.687660 TCATTGCCATGCTGTGTTGTT 59.312 42.857 0.00 0.00 0.00 2.83
1405 1427 1.081242 GCCATGCTGTGTTGTTCCG 60.081 57.895 0.00 0.00 0.00 4.30
1419 1441 1.069513 TGTTCCGAGTACAACTGGGTG 59.930 52.381 7.81 0.00 43.58 4.61
1445 1467 4.156556 GTGTAATGCATGTTGATGTCAGGT 59.843 41.667 0.00 0.00 31.50 4.00
1448 1470 3.979101 TGCATGTTGATGTCAGGTCTA 57.021 42.857 0.00 0.00 31.50 2.59
1506 1554 5.771469 TGAATGTGCTTGGTTTATGTTGAG 58.229 37.500 0.00 0.00 0.00 3.02
1509 1557 6.594788 ATGTGCTTGGTTTATGTTGAGATT 57.405 33.333 0.00 0.00 0.00 2.40
1512 1560 6.700960 TGTGCTTGGTTTATGTTGAGATTTTG 59.299 34.615 0.00 0.00 0.00 2.44
1537 1585 1.408702 GCTTGCTGACCTTTTGGAACA 59.591 47.619 0.00 0.00 44.07 3.18
1538 1586 2.036346 GCTTGCTGACCTTTTGGAACAT 59.964 45.455 0.00 0.00 44.07 2.71
1540 1588 1.962807 TGCTGACCTTTTGGAACATGG 59.037 47.619 0.00 0.00 44.07 3.66
1548 1596 1.243342 TTTGGAACATGGAGGCAGCG 61.243 55.000 0.00 0.00 39.30 5.18
1581 1629 6.769822 AGTTCCGTAAGACGATCTATTAGGAA 59.230 38.462 0.00 0.58 46.05 3.36
1588 1636 7.497925 AAGACGATCTATTAGGAAAAATGCC 57.502 36.000 0.00 0.00 0.00 4.40
1602 1650 5.290885 GGAAAAATGCCGATACCAAATTGAC 59.709 40.000 0.00 0.00 0.00 3.18
1614 1662 8.859156 CGATACCAAATTGACAAGTTTTTATGG 58.141 33.333 0.00 0.08 0.00 2.74
1631 1679 1.067295 TGGTTCAGGATCTGGTGCTT 58.933 50.000 0.00 0.00 31.51 3.91
1632 1680 1.271543 TGGTTCAGGATCTGGTGCTTG 60.272 52.381 0.00 0.00 31.51 4.01
1642 1690 3.624326 TCTGGTGCTTGAATTGTTTCG 57.376 42.857 0.00 0.00 34.39 3.46
1645 1693 4.213270 TCTGGTGCTTGAATTGTTTCGTAG 59.787 41.667 0.00 0.00 34.39 3.51
1646 1694 3.252215 TGGTGCTTGAATTGTTTCGTAGG 59.748 43.478 0.00 0.00 34.39 3.18
1655 1703 0.108963 TGTTTCGTAGGGGTGTTGGG 59.891 55.000 0.00 0.00 0.00 4.12
1662 1710 2.167662 GTAGGGGTGTTGGGATTTGTG 58.832 52.381 0.00 0.00 0.00 3.33
1670 1718 4.261447 GGTGTTGGGATTTGTGTCAGTTAC 60.261 45.833 0.00 0.00 0.00 2.50
1679 1727 6.929606 GGATTTGTGTCAGTTACTGTAGAACT 59.070 38.462 12.41 2.76 37.64 3.01
1687 1736 7.283807 TGTCAGTTACTGTAGAACTTCTGTGTA 59.716 37.037 12.41 0.19 34.90 2.90
1700 1749 8.867097 AGAACTTCTGTGTAGTCTATTTGGTTA 58.133 33.333 0.00 0.00 0.00 2.85
1713 1762 9.927081 AGTCTATTTGGTTATCATTCATTTCCT 57.073 29.630 0.00 0.00 0.00 3.36
1719 1768 7.169158 TGGTTATCATTCATTTCCTGGTTTC 57.831 36.000 0.00 0.00 0.00 2.78
1732 1781 6.885952 TTCCTGGTTTCGTTATTCAATTCA 57.114 33.333 0.00 0.00 0.00 2.57
1775 1824 5.472137 TGTTCAAGGGTATACAGAGCAAAAC 59.528 40.000 5.01 1.41 0.00 2.43
1780 1829 5.570320 AGGGTATACAGAGCAAAACATGTT 58.430 37.500 4.92 4.92 0.00 2.71
1799 1848 6.203338 ACATGTTGATTTTGGTTTGATCTTGC 59.797 34.615 0.00 0.00 0.00 4.01
1811 1860 5.634859 GGTTTGATCTTGCATGTTAAGTTGG 59.365 40.000 10.35 0.00 0.00 3.77
1951 2002 6.405278 AAGGTTTCTTTGGATTACTGGTTG 57.595 37.500 0.00 0.00 0.00 3.77
2029 2080 5.014123 AGGTCTCTGGTTAATGTTGATTCCA 59.986 40.000 0.00 0.00 0.00 3.53
2170 2223 2.099592 TGGTTTCAGCTTGCAAACTGAG 59.900 45.455 26.54 5.36 43.43 3.35
2194 2247 5.182190 GGGTTTCTGATTTCTCTCACCTTTC 59.818 44.000 0.00 0.00 0.00 2.62
2256 2309 5.867903 TGTCCATGAATGTTCAAAAGGTT 57.132 34.783 0.00 0.00 41.13 3.50
2439 2492 4.252073 ACATCTTTCAGCTCATCTGTGAC 58.748 43.478 0.00 0.00 43.32 3.67
2493 2546 4.337145 ACGGTTATGCTAACCAATTTCCA 58.663 39.130 18.93 0.00 40.28 3.53
2532 2585 3.261981 ACCATGACCGAAACAGGTATC 57.738 47.619 0.00 0.00 46.09 2.24
2615 2670 2.736721 TCAACTTCATTTCGGCTCTTCG 59.263 45.455 0.00 0.00 0.00 3.79
2762 2817 4.331159 ACCCTTTTTACATGGGCAGTAT 57.669 40.909 0.00 0.00 42.87 2.12
2860 2915 2.330216 AGTCTGTTCCAACTGTAGCCT 58.670 47.619 0.00 0.00 0.00 4.58
2870 2925 3.383185 CCAACTGTAGCCTTGGTCAAAAA 59.617 43.478 0.00 0.00 33.46 1.94
2882 2938 6.710295 GCCTTGGTCAAAAAGATAACCATTTT 59.290 34.615 0.00 0.00 41.23 1.82
2883 2939 7.228507 GCCTTGGTCAAAAAGATAACCATTTTT 59.771 33.333 0.00 0.00 41.23 1.94
3035 3091 5.541484 AGCAAGATCCTTTGGAATTTGAGTT 59.459 36.000 13.77 1.58 34.34 3.01
3091 3147 1.457831 CCCTCCCTCCCTAGTTCGG 60.458 68.421 0.00 0.00 0.00 4.30
3097 3153 0.970937 CCTCCCTAGTTCGGCAGACA 60.971 60.000 0.00 0.00 0.00 3.41
3162 3221 1.071385 ACACCTGAAGAAGAGCCTGTG 59.929 52.381 0.00 0.00 0.00 3.66
3219 3278 9.931210 GTGGTAAGCTAACATATGTTGTAATTC 57.069 33.333 27.62 14.76 37.68 2.17
3253 3312 8.359642 TCTGAATCCTTTGTTTTAACTTGATGG 58.640 33.333 0.00 0.00 0.00 3.51
3405 3465 3.636764 AGAAAAATCGAACTTGGGCACTT 59.363 39.130 0.00 0.00 0.00 3.16
3409 3469 0.468226 TCGAACTTGGGCACTTGTCT 59.532 50.000 0.00 0.00 0.00 3.41
3422 3482 3.062763 CACTTGTCTGGATGTCAGTGTC 58.937 50.000 0.00 0.00 43.76 3.67
3450 3510 6.498651 TGAGGATGAAGGTTTCTTTCTACTCT 59.501 38.462 0.00 0.00 31.39 3.24
3483 3543 8.690203 TTTTATTCTCATGACTCCTTTGTTGA 57.310 30.769 0.00 0.00 0.00 3.18
3492 3552 1.072965 CTCCTTTGTTGAGACCTGCCT 59.927 52.381 0.00 0.00 31.26 4.75
3499 3559 4.098914 TGTTGAGACCTGCCTTATGTTT 57.901 40.909 0.00 0.00 0.00 2.83
3500 3560 4.469657 TGTTGAGACCTGCCTTATGTTTT 58.530 39.130 0.00 0.00 0.00 2.43
3501 3561 4.892934 TGTTGAGACCTGCCTTATGTTTTT 59.107 37.500 0.00 0.00 0.00 1.94
3560 3623 7.179269 TGGCAAAACTTATCTACCCACTAATT 58.821 34.615 0.00 0.00 0.00 1.40
3580 3643 9.372369 ACTAATTATTAGCTGTTCTCTGTTGAC 57.628 33.333 11.50 0.00 36.71 3.18
3588 3651 2.103094 TGTTCTCTGTTGACACCCTCTG 59.897 50.000 0.00 0.00 0.00 3.35
3711 3777 3.053831 AGTGCTAGGCGTTAATTGTGT 57.946 42.857 0.00 0.00 0.00 3.72
3751 3818 0.380378 TTTCTGACCAAAGCGCACAC 59.620 50.000 11.47 0.00 0.00 3.82
3752 3819 0.463654 TTCTGACCAAAGCGCACACT 60.464 50.000 11.47 0.00 0.00 3.55
3753 3820 0.463654 TCTGACCAAAGCGCACACTT 60.464 50.000 11.47 0.00 0.00 3.16
3754 3821 1.202592 TCTGACCAAAGCGCACACTTA 60.203 47.619 11.47 0.00 0.00 2.24
3755 3822 1.806542 CTGACCAAAGCGCACACTTAT 59.193 47.619 11.47 0.00 0.00 1.73
3756 3823 1.535028 TGACCAAAGCGCACACTTATG 59.465 47.619 11.47 0.00 0.00 1.90
3757 3824 0.240945 ACCAAAGCGCACACTTATGC 59.759 50.000 11.47 0.00 42.48 3.14
3798 3876 0.611200 TGAGCCTAGGCGCACTTAAA 59.389 50.000 33.26 12.31 45.33 1.52
3800 3878 3.000067 TGAGCCTAGGCGCACTTAAATG 61.000 50.000 33.26 0.00 45.33 2.32
3881 3959 6.015095 GCCTAAAAAGCATCTATTTATGGGCT 60.015 38.462 0.00 0.00 31.24 5.19
3956 4047 3.244181 CCAAAAGCCCATAAACAGTTGCT 60.244 43.478 0.00 0.00 0.00 3.91
4000 4091 2.677902 GCAAAAGCCAAGAATAAGCCCC 60.678 50.000 0.00 0.00 0.00 5.80
4005 4096 1.894978 GCCAAGAATAAGCCCCACCAA 60.895 52.381 0.00 0.00 0.00 3.67
4101 4193 3.282885 GAAATCCTAAGTGGGGAAGCTG 58.717 50.000 0.00 0.00 36.37 4.24
4116 4208 5.417580 GGGGAAGCTGTTGTTTGAATATGTA 59.582 40.000 0.00 0.00 0.00 2.29
4117 4209 6.322491 GGGAAGCTGTTGTTTGAATATGTAC 58.678 40.000 0.00 0.00 0.00 2.90
4133 4225 4.668576 ATGTACACATGCTTTGTCTTCG 57.331 40.909 0.00 0.00 36.00 3.79
4147 4244 4.609691 TGTCTTCGGTTTGTTTCTTGTC 57.390 40.909 0.00 0.00 0.00 3.18
4155 4252 4.970003 CGGTTTGTTTCTTGTCTCACATTC 59.030 41.667 0.00 0.00 0.00 2.67
4264 4366 4.682778 TGGTAGCGGTATCTTATTGCTT 57.317 40.909 6.44 0.00 37.12 3.91
4305 4411 5.953183 TCCACAATCATTGTTTACTCATGC 58.047 37.500 0.00 0.00 43.23 4.06
4306 4412 5.476254 TCCACAATCATTGTTTACTCATGCA 59.524 36.000 0.00 0.00 43.23 3.96
4307 4413 6.153170 TCCACAATCATTGTTTACTCATGCAT 59.847 34.615 0.00 0.00 43.23 3.96
4308 4414 6.254804 CCACAATCATTGTTTACTCATGCATG 59.745 38.462 21.07 21.07 43.23 4.06
4400 4507 5.948162 TCTTGCTGAAGAGCTTATTGGAAAT 59.052 36.000 0.00 0.00 46.39 2.17
4418 4525 6.405538 TGGAAATTTAAATCTGGCATGTTCC 58.594 36.000 13.54 13.54 33.06 3.62
4476 4584 5.827267 TGTGATCTTTTTCTTGACATGTGGA 59.173 36.000 1.15 0.00 0.00 4.02
4502 4610 6.681729 TTCTGACCTGGTAGTTAAGTGAAT 57.318 37.500 0.00 0.00 0.00 2.57
4504 4612 7.786046 TCTGACCTGGTAGTTAAGTGAATTA 57.214 36.000 0.00 0.00 0.00 1.40
4513 4621 9.369672 TGGTAGTTAAGTGAATTATTTTTGGGT 57.630 29.630 0.00 0.00 0.00 4.51
4558 4666 5.235305 AGCAATATACCTTTGAACTTGCG 57.765 39.130 0.00 0.00 41.64 4.85
4609 4717 4.214332 GTCCAGAGACATTTGAACCTGTTC 59.786 45.833 3.07 3.07 42.99 3.18
4920 5029 6.532988 TCTAGGCTTTTTCTCTAGTTCCTC 57.467 41.667 0.00 0.00 33.96 3.71
5094 5204 3.500343 AGGTGACCCTGGATTGAAAAAG 58.500 45.455 0.00 0.00 40.58 2.27
5125 5235 5.480422 GGGGGTTATAAAGAATATGCCTTGG 59.520 44.000 0.00 0.00 0.00 3.61
5366 5476 5.009010 ACTTCACCAGACAAGCAAACTATTG 59.991 40.000 0.00 0.00 39.65 1.90
5374 5484 7.766278 CCAGACAAGCAAACTATTGTAGTAGAT 59.234 37.037 0.00 0.00 39.66 1.98
5636 5746 1.080435 GCGGCGGTGGAAGTAAGTAC 61.080 60.000 9.78 0.00 0.00 2.73
5658 5768 9.082313 AGTACAAATTTTGATTTCCTCATGACT 57.918 29.630 15.81 0.11 32.72 3.41
5661 5771 8.859090 ACAAATTTTGATTTCCTCATGACTGTA 58.141 29.630 15.81 0.00 32.72 2.74
5711 5821 0.894141 TGTGCCAACTGTTGCTGTTT 59.106 45.000 14.94 0.00 0.00 2.83
5824 5934 6.749118 GTCTTTCATGTTATCCAGTGCAATTC 59.251 38.462 0.00 0.00 0.00 2.17
6182 6459 1.188863 GCATCCCATTTGGTGCTCTT 58.811 50.000 5.24 0.00 37.83 2.85
6283 6560 3.921969 GAGCATGACTCGTTTCTGATG 57.078 47.619 0.00 0.00 35.18 3.07
6286 6563 2.677902 GCATGACTCGTTTCTGATGGGA 60.678 50.000 0.00 0.00 0.00 4.37
6287 6564 2.743636 TGACTCGTTTCTGATGGGAC 57.256 50.000 0.00 0.00 0.00 4.46
6288 6565 2.248248 TGACTCGTTTCTGATGGGACT 58.752 47.619 0.00 0.00 0.00 3.85
6289 6566 2.231478 TGACTCGTTTCTGATGGGACTC 59.769 50.000 0.00 0.00 0.00 3.36
6290 6567 2.494073 GACTCGTTTCTGATGGGACTCT 59.506 50.000 0.00 0.00 0.00 3.24
6332 6609 1.019673 TCGTGTCGCCTATCTGGTAC 58.980 55.000 0.00 0.00 38.35 3.34
6333 6610 1.022735 CGTGTCGCCTATCTGGTACT 58.977 55.000 0.00 0.00 38.35 2.73
6334 6611 2.158914 TCGTGTCGCCTATCTGGTACTA 60.159 50.000 0.00 0.00 38.35 1.82
6350 6627 6.670464 TCTGGTACTATGAACTAAACATGGGA 59.330 38.462 0.00 0.00 32.02 4.37
6354 6631 8.674607 GGTACTATGAACTAAACATGGGAAAAG 58.325 37.037 0.00 0.00 32.02 2.27
6382 6659 4.974645 TCAGTGTTAGTTGATCCTTGGT 57.025 40.909 0.00 0.00 0.00 3.67
6391 6668 3.760684 AGTTGATCCTTGGTCATTTGAGC 59.239 43.478 2.86 2.86 42.48 4.26
6441 6718 9.178758 GTCAGTCATCAGGTTTAATAATTTCCT 57.821 33.333 0.00 0.00 0.00 3.36
6445 6722 9.343539 GTCATCAGGTTTAATAATTTCCTAGCT 57.656 33.333 0.00 0.00 0.00 3.32
6463 6740 1.531423 CTTGTTGCCATGAGTCAGCT 58.469 50.000 0.00 0.00 0.00 4.24
6489 6766 5.483937 TGGCGTCTAACATATATCTGGGATT 59.516 40.000 0.00 0.00 0.00 3.01
6575 6862 1.442987 GCAAAGGCTGTGGCTGTTT 59.557 52.632 6.84 0.00 38.81 2.83
6591 6878 3.494398 GCTGTTTCTGTTCCTGGTCTACA 60.494 47.826 0.00 0.00 0.00 2.74
6677 6967 3.133901 TCCTGTAGTTTCTGTGAAGCACA 59.866 43.478 0.00 0.00 42.45 4.57
6696 6986 1.806542 CAACGCTGTATGTGAAGGCTT 59.193 47.619 0.00 0.00 0.00 4.35
6719 7011 0.037303 CACACAGGTCCATGGCTTCT 59.963 55.000 6.96 0.87 0.00 2.85
6743 7035 1.731613 CATTGTGCGTTGCTGCTGG 60.732 57.895 0.00 0.00 35.36 4.85
6744 7036 1.898094 ATTGTGCGTTGCTGCTGGA 60.898 52.632 0.00 0.00 35.36 3.86
6745 7037 1.859427 ATTGTGCGTTGCTGCTGGAG 61.859 55.000 0.00 0.00 35.36 3.86
6794 7092 3.288092 AGACATACACACGGCTCAGATA 58.712 45.455 0.00 0.00 0.00 1.98
6796 7094 3.024547 ACATACACACGGCTCAGATAGT 58.975 45.455 0.00 0.00 0.00 2.12
6798 7096 2.370281 ACACACGGCTCAGATAGTTG 57.630 50.000 0.00 0.00 0.00 3.16
6799 7097 1.002366 CACACGGCTCAGATAGTTGC 58.998 55.000 0.00 0.00 0.00 4.17
6803 7101 2.623173 GCTCAGATAGTTGCGCGC 59.377 61.111 27.26 27.26 0.00 6.86
6827 7125 0.977395 GCACCTTCACTCCAGGTAGT 59.023 55.000 0.00 0.00 43.30 2.73
6833 7131 3.181454 CCTTCACTCCAGGTAGTGTTTGT 60.181 47.826 14.98 0.00 45.78 2.83
6834 7132 3.746045 TCACTCCAGGTAGTGTTTGTC 57.254 47.619 14.98 0.00 45.78 3.18
6835 7133 3.035363 TCACTCCAGGTAGTGTTTGTCA 58.965 45.455 14.98 0.00 45.78 3.58
6938 7236 2.022240 GACAGTCAGATCCGCCTCCC 62.022 65.000 0.00 0.00 0.00 4.30
6950 7248 2.040278 CCTCCCTGCCTCTCCACT 59.960 66.667 0.00 0.00 0.00 4.00
6959 7257 1.323271 GCCTCTCCACTGTCGGATCA 61.323 60.000 0.00 0.00 33.56 2.92
6968 7266 3.809832 CCACTGTCGGATCATATGTTTCC 59.190 47.826 14.03 14.03 0.00 3.13
6974 7272 4.821805 GTCGGATCATATGTTTCCATTGGT 59.178 41.667 20.22 0.00 32.29 3.67
6990 7288 3.737032 TTGGTTTCCAAATTTCCGGTC 57.263 42.857 0.00 0.00 40.92 4.79
6991 7289 1.609555 TGGTTTCCAAATTTCCGGTCG 59.390 47.619 0.00 0.00 0.00 4.79
6992 7290 1.881324 GGTTTCCAAATTTCCGGTCGA 59.119 47.619 0.00 0.00 0.00 4.20
6993 7291 2.351060 GGTTTCCAAATTTCCGGTCGAC 60.351 50.000 7.13 7.13 0.00 4.20
6994 7292 1.149987 TTCCAAATTTCCGGTCGACG 58.850 50.000 9.92 4.95 43.80 5.12
6995 7293 1.133869 CCAAATTTCCGGTCGACGC 59.866 57.895 9.92 1.55 42.52 5.19
6996 7294 1.225637 CAAATTTCCGGTCGACGCG 60.226 57.895 9.92 13.83 42.52 6.01
6997 7295 1.665599 AAATTTCCGGTCGACGCGT 60.666 52.632 13.85 13.85 42.52 6.01
6998 7296 1.223417 AAATTTCCGGTCGACGCGTT 61.223 50.000 15.53 0.00 42.52 4.84
6999 7297 1.620413 AATTTCCGGTCGACGCGTTC 61.620 55.000 15.53 7.37 42.52 3.95
7000 7298 4.705519 TTCCGGTCGACGCGTTCC 62.706 66.667 15.53 15.59 42.52 3.62
7003 7301 4.394078 CGGTCGACGCGTTCCAGA 62.394 66.667 15.53 8.44 34.82 3.86
7004 7302 2.504244 GGTCGACGCGTTCCAGAG 60.504 66.667 15.53 1.14 0.00 3.35
7005 7303 2.504244 GTCGACGCGTTCCAGAGG 60.504 66.667 15.53 0.00 0.00 3.69
7006 7304 3.744719 TCGACGCGTTCCAGAGGG 61.745 66.667 15.53 0.00 0.00 4.30
7007 7305 4.796231 CGACGCGTTCCAGAGGGG 62.796 72.222 15.53 0.00 38.37 4.79
7012 7310 4.452733 CGTTCCAGAGGGGCGGTC 62.453 72.222 0.00 0.00 36.21 4.79
7013 7311 3.003763 GTTCCAGAGGGGCGGTCT 61.004 66.667 0.00 0.00 36.21 3.85
7014 7312 3.003173 TTCCAGAGGGGCGGTCTG 61.003 66.667 7.56 7.56 41.08 3.51
7015 7313 3.539593 TTCCAGAGGGGCGGTCTGA 62.540 63.158 14.48 1.10 43.65 3.27
7016 7314 3.775654 CCAGAGGGGCGGTCTGAC 61.776 72.222 14.48 0.00 43.65 3.51
7017 7315 2.681778 CAGAGGGGCGGTCTGACT 60.682 66.667 7.85 0.00 43.65 3.41
7018 7316 2.120718 AGAGGGGCGGTCTGACTT 59.879 61.111 7.85 0.00 0.00 3.01
7019 7317 1.536662 AGAGGGGCGGTCTGACTTT 60.537 57.895 7.85 0.00 0.00 2.66
7020 7318 1.376037 GAGGGGCGGTCTGACTTTG 60.376 63.158 7.85 0.00 0.00 2.77
7021 7319 3.056328 GGGGCGGTCTGACTTTGC 61.056 66.667 7.85 9.33 0.00 3.68
7022 7320 3.423154 GGGCGGTCTGACTTTGCG 61.423 66.667 7.85 3.89 0.00 4.85
7023 7321 2.665185 GGCGGTCTGACTTTGCGT 60.665 61.111 7.85 0.00 0.00 5.24
7024 7322 2.668280 GGCGGTCTGACTTTGCGTC 61.668 63.158 7.85 0.32 43.14 5.19
7025 7323 3.000080 GCGGTCTGACTTTGCGTCG 62.000 63.158 7.85 2.08 45.87 5.12
7027 7325 2.027625 GGTCTGACTTTGCGTCGGG 61.028 63.158 7.85 0.00 46.85 5.14
7028 7326 2.027625 GTCTGACTTTGCGTCGGGG 61.028 63.158 0.00 0.00 46.85 5.73
7029 7327 3.423154 CTGACTTTGCGTCGGGGC 61.423 66.667 0.00 0.00 45.87 5.80
7048 7346 4.856801 GCGGCCCGGATGTGATGT 62.857 66.667 4.77 0.00 0.00 3.06
7049 7347 2.896854 CGGCCCGGATGTGATGTG 60.897 66.667 0.73 0.00 0.00 3.21
7050 7348 2.516930 GGCCCGGATGTGATGTGG 60.517 66.667 0.73 0.00 0.00 4.17
7051 7349 2.272146 GCCCGGATGTGATGTGGT 59.728 61.111 0.73 0.00 0.00 4.16
7052 7350 2.114670 GCCCGGATGTGATGTGGTG 61.115 63.158 0.73 0.00 0.00 4.17
7053 7351 2.114670 CCCGGATGTGATGTGGTGC 61.115 63.158 0.73 0.00 0.00 5.01
7054 7352 2.463620 CCGGATGTGATGTGGTGCG 61.464 63.158 0.00 0.00 0.00 5.34
7055 7353 1.447663 CGGATGTGATGTGGTGCGA 60.448 57.895 0.00 0.00 0.00 5.10
7056 7354 1.695893 CGGATGTGATGTGGTGCGAC 61.696 60.000 0.00 0.00 0.00 5.19
7057 7355 1.695893 GGATGTGATGTGGTGCGACG 61.696 60.000 0.00 0.00 0.00 5.12
7058 7356 1.005037 ATGTGATGTGGTGCGACGT 60.005 52.632 0.00 0.00 0.00 4.34
7059 7357 0.602638 ATGTGATGTGGTGCGACGTT 60.603 50.000 0.00 0.00 0.00 3.99
7060 7358 1.218875 TGTGATGTGGTGCGACGTTC 61.219 55.000 0.00 0.00 0.00 3.95
7061 7359 2.019408 TGATGTGGTGCGACGTTCG 61.019 57.895 0.00 0.00 43.89 3.95
7062 7360 2.019951 GATGTGGTGCGACGTTCGT 61.020 57.895 0.00 0.00 42.81 3.85
7063 7361 2.210524 GATGTGGTGCGACGTTCGTG 62.211 60.000 1.74 0.00 42.81 4.35
7064 7362 3.698463 GTGGTGCGACGTTCGTGG 61.698 66.667 1.74 2.57 42.81 4.94
7065 7363 4.210093 TGGTGCGACGTTCGTGGT 62.210 61.111 1.74 0.00 42.81 4.16
7066 7364 3.400590 GGTGCGACGTTCGTGGTC 61.401 66.667 1.74 0.00 42.81 4.02
7067 7365 2.354305 GTGCGACGTTCGTGGTCT 60.354 61.111 1.74 0.00 42.81 3.85
7068 7366 2.354188 TGCGACGTTCGTGGTCTG 60.354 61.111 1.74 0.00 42.81 3.51
7069 7367 3.764049 GCGACGTTCGTGGTCTGC 61.764 66.667 1.74 0.00 42.81 4.26
7070 7368 3.458579 CGACGTTCGTGGTCTGCG 61.459 66.667 1.74 0.00 34.72 5.18
7071 7369 2.050714 GACGTTCGTGGTCTGCGA 60.051 61.111 1.74 0.00 36.51 5.10
7072 7370 2.050351 ACGTTCGTGGTCTGCGAG 60.050 61.111 0.00 0.00 39.61 5.03
7073 7371 3.470567 CGTTCGTGGTCTGCGAGC 61.471 66.667 0.00 1.60 39.61 5.03
7074 7372 3.470567 GTTCGTGGTCTGCGAGCG 61.471 66.667 0.00 0.00 39.61 5.03
7075 7373 4.717629 TTCGTGGTCTGCGAGCGG 62.718 66.667 0.00 0.00 39.61 5.52
7078 7376 3.414700 GTGGTCTGCGAGCGGTTG 61.415 66.667 3.65 0.00 32.15 3.77
7122 7420 4.326766 CTGGGTTGTGCGGCGTTG 62.327 66.667 9.37 0.00 0.00 4.10
7125 7423 4.980903 GGTTGTGCGGCGTTGCTG 62.981 66.667 9.37 0.00 38.08 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.969136 TCTCTACTCCTAAAGGGGAAGT 57.031 45.455 1.99 0.00 38.16 3.01
1 2 5.459505 TCATCTCTACTCCTAAAGGGGAAG 58.540 45.833 1.99 0.00 38.16 3.46
2 3 5.483174 TCATCTCTACTCCTAAAGGGGAA 57.517 43.478 1.99 0.00 38.16 3.97
3 4 5.483174 TTCATCTCTACTCCTAAAGGGGA 57.517 43.478 1.99 0.00 38.16 4.81
4 5 5.663556 AGTTTCATCTCTACTCCTAAAGGGG 59.336 44.000 0.00 0.00 42.91 4.79
5 6 6.800072 AGTTTCATCTCTACTCCTAAAGGG 57.200 41.667 0.00 0.00 35.41 3.95
11 12 9.315363 TCTTCTTTTAGTTTCATCTCTACTCCT 57.685 33.333 0.00 0.00 0.00 3.69
12 13 9.930693 TTCTTCTTTTAGTTTCATCTCTACTCC 57.069 33.333 0.00 0.00 0.00 3.85
30 31 9.537848 CGTGCGTTATATTTTAGTTTCTTCTTT 57.462 29.630 0.00 0.00 0.00 2.52
31 32 7.691050 GCGTGCGTTATATTTTAGTTTCTTCTT 59.309 33.333 0.00 0.00 0.00 2.52
32 33 7.148540 TGCGTGCGTTATATTTTAGTTTCTTCT 60.149 33.333 0.00 0.00 0.00 2.85
33 34 6.957077 TGCGTGCGTTATATTTTAGTTTCTTC 59.043 34.615 0.00 0.00 0.00 2.87
34 35 6.739550 GTGCGTGCGTTATATTTTAGTTTCTT 59.260 34.615 0.00 0.00 0.00 2.52
35 36 6.245724 GTGCGTGCGTTATATTTTAGTTTCT 58.754 36.000 0.00 0.00 0.00 2.52
36 37 5.166583 CGTGCGTGCGTTATATTTTAGTTTC 59.833 40.000 0.00 0.00 0.00 2.78
37 38 5.016985 CGTGCGTGCGTTATATTTTAGTTT 58.983 37.500 0.00 0.00 0.00 2.66
38 39 4.570935 CGTGCGTGCGTTATATTTTAGTT 58.429 39.130 0.00 0.00 0.00 2.24
39 40 3.542680 GCGTGCGTGCGTTATATTTTAGT 60.543 43.478 3.11 0.00 0.00 2.24
40 41 2.955799 GCGTGCGTGCGTTATATTTTAG 59.044 45.455 3.11 0.00 0.00 1.85
41 42 2.958908 GCGTGCGTGCGTTATATTTTA 58.041 42.857 3.11 0.00 0.00 1.52
42 43 1.805286 GCGTGCGTGCGTTATATTTT 58.195 45.000 3.11 0.00 0.00 1.82
43 44 3.502306 GCGTGCGTGCGTTATATTT 57.498 47.368 3.11 0.00 0.00 1.40
55 56 3.645157 GACCCATTTGACGCGTGCG 62.645 63.158 20.70 13.39 46.03 5.34
56 57 2.175811 GACCCATTTGACGCGTGC 59.824 61.111 20.70 9.34 0.00 5.34
57 58 2.474266 CGACCCATTTGACGCGTG 59.526 61.111 20.70 1.77 0.00 5.34
58 59 2.740826 CCGACCCATTTGACGCGT 60.741 61.111 13.85 13.85 0.00 6.01
59 60 4.160635 GCCGACCCATTTGACGCG 62.161 66.667 3.53 3.53 0.00 6.01
60 61 3.810896 GGCCGACCCATTTGACGC 61.811 66.667 0.00 0.00 0.00 5.19
61 62 1.519751 TTTGGCCGACCCATTTGACG 61.520 55.000 0.00 0.00 44.89 4.35
62 63 0.894835 ATTTGGCCGACCCATTTGAC 59.105 50.000 0.00 0.00 44.89 3.18
63 64 1.638529 AATTTGGCCGACCCATTTGA 58.361 45.000 0.00 0.00 44.89 2.69
64 65 2.470983 AAATTTGGCCGACCCATTTG 57.529 45.000 0.00 0.00 44.89 2.32
65 66 4.835284 ATTAAATTTGGCCGACCCATTT 57.165 36.364 0.00 2.13 44.89 2.32
66 67 4.835284 AATTAAATTTGGCCGACCCATT 57.165 36.364 0.00 0.00 44.89 3.16
67 68 6.493189 AATAATTAAATTTGGCCGACCCAT 57.507 33.333 0.00 0.00 44.89 4.00
68 69 5.941555 AATAATTAAATTTGGCCGACCCA 57.058 34.783 0.00 0.00 43.51 4.51
69 70 8.145122 TCAATAATAATTAAATTTGGCCGACCC 58.855 33.333 0.00 0.00 33.59 4.46
70 71 9.705290 ATCAATAATAATTAAATTTGGCCGACC 57.295 29.630 0.00 0.00 0.00 4.79
115 116 9.817809 GTCTTCCACTACTCATATACAAATCAA 57.182 33.333 0.00 0.00 0.00 2.57
116 117 8.977412 TGTCTTCCACTACTCATATACAAATCA 58.023 33.333 0.00 0.00 0.00 2.57
117 118 9.817809 TTGTCTTCCACTACTCATATACAAATC 57.182 33.333 0.00 0.00 0.00 2.17
118 119 9.823647 CTTGTCTTCCACTACTCATATACAAAT 57.176 33.333 0.00 0.00 0.00 2.32
119 120 8.258007 CCTTGTCTTCCACTACTCATATACAAA 58.742 37.037 0.00 0.00 0.00 2.83
120 121 7.618117 TCCTTGTCTTCCACTACTCATATACAA 59.382 37.037 0.00 0.00 0.00 2.41
121 122 7.123383 TCCTTGTCTTCCACTACTCATATACA 58.877 38.462 0.00 0.00 0.00 2.29
122 123 7.584122 TCCTTGTCTTCCACTACTCATATAC 57.416 40.000 0.00 0.00 0.00 1.47
123 124 8.603898 TTTCCTTGTCTTCCACTACTCATATA 57.396 34.615 0.00 0.00 0.00 0.86
124 125 7.181125 ACTTTCCTTGTCTTCCACTACTCATAT 59.819 37.037 0.00 0.00 0.00 1.78
125 126 6.497259 ACTTTCCTTGTCTTCCACTACTCATA 59.503 38.462 0.00 0.00 0.00 2.15
126 127 5.308237 ACTTTCCTTGTCTTCCACTACTCAT 59.692 40.000 0.00 0.00 0.00 2.90
127 128 4.654262 ACTTTCCTTGTCTTCCACTACTCA 59.346 41.667 0.00 0.00 0.00 3.41
128 129 5.216614 ACTTTCCTTGTCTTCCACTACTC 57.783 43.478 0.00 0.00 0.00 2.59
129 130 5.130477 TGAACTTTCCTTGTCTTCCACTACT 59.870 40.000 0.00 0.00 0.00 2.57
130 131 5.365619 TGAACTTTCCTTGTCTTCCACTAC 58.634 41.667 0.00 0.00 0.00 2.73
131 132 5.365605 TCTGAACTTTCCTTGTCTTCCACTA 59.634 40.000 0.00 0.00 0.00 2.74
132 133 4.164221 TCTGAACTTTCCTTGTCTTCCACT 59.836 41.667 0.00 0.00 0.00 4.00
133 134 4.451900 TCTGAACTTTCCTTGTCTTCCAC 58.548 43.478 0.00 0.00 0.00 4.02
134 135 4.771114 TCTGAACTTTCCTTGTCTTCCA 57.229 40.909 0.00 0.00 0.00 3.53
135 136 6.641169 AAATCTGAACTTTCCTTGTCTTCC 57.359 37.500 0.00 0.00 0.00 3.46
137 138 9.971922 CAATTAAATCTGAACTTTCCTTGTCTT 57.028 29.630 0.00 0.00 0.00 3.01
138 139 9.354673 TCAATTAAATCTGAACTTTCCTTGTCT 57.645 29.630 0.00 0.00 0.00 3.41
139 140 9.617975 CTCAATTAAATCTGAACTTTCCTTGTC 57.382 33.333 0.00 0.00 0.00 3.18
140 141 9.354673 TCTCAATTAAATCTGAACTTTCCTTGT 57.645 29.630 0.00 0.00 0.00 3.16
174 175 8.127327 CGCATTAACTCATTCAAATCAGATCTT 58.873 33.333 0.00 0.00 0.00 2.40
175 176 7.281774 ACGCATTAACTCATTCAAATCAGATCT 59.718 33.333 0.00 0.00 0.00 2.75
176 177 7.375280 CACGCATTAACTCATTCAAATCAGATC 59.625 37.037 0.00 0.00 0.00 2.75
177 178 7.066163 TCACGCATTAACTCATTCAAATCAGAT 59.934 33.333 0.00 0.00 0.00 2.90
178 179 6.371271 TCACGCATTAACTCATTCAAATCAGA 59.629 34.615 0.00 0.00 0.00 3.27
179 180 6.467047 GTCACGCATTAACTCATTCAAATCAG 59.533 38.462 0.00 0.00 0.00 2.90
180 181 6.072783 TGTCACGCATTAACTCATTCAAATCA 60.073 34.615 0.00 0.00 0.00 2.57
181 182 6.314018 TGTCACGCATTAACTCATTCAAATC 58.686 36.000 0.00 0.00 0.00 2.17
182 183 6.252967 TGTCACGCATTAACTCATTCAAAT 57.747 33.333 0.00 0.00 0.00 2.32
183 184 5.681337 TGTCACGCATTAACTCATTCAAA 57.319 34.783 0.00 0.00 0.00 2.69
184 185 5.878332 ATGTCACGCATTAACTCATTCAA 57.122 34.783 0.00 0.00 33.14 2.69
185 186 5.878332 AATGTCACGCATTAACTCATTCA 57.122 34.783 0.00 0.00 45.26 2.57
196 197 6.365789 CACTTTCCAAAAATAATGTCACGCAT 59.634 34.615 0.00 0.00 40.03 4.73
197 198 5.689514 CACTTTCCAAAAATAATGTCACGCA 59.310 36.000 0.00 0.00 0.00 5.24
198 199 5.689961 ACACTTTCCAAAAATAATGTCACGC 59.310 36.000 0.00 0.00 0.00 5.34
199 200 6.086241 CGACACTTTCCAAAAATAATGTCACG 59.914 38.462 0.00 0.00 34.48 4.35
200 201 7.136119 TCGACACTTTCCAAAAATAATGTCAC 58.864 34.615 0.00 0.00 34.48 3.67
201 202 7.265647 TCGACACTTTCCAAAAATAATGTCA 57.734 32.000 0.00 0.00 34.48 3.58
202 203 8.742554 AATCGACACTTTCCAAAAATAATGTC 57.257 30.769 0.00 0.00 33.05 3.06
203 204 8.977505 CAAATCGACACTTTCCAAAAATAATGT 58.022 29.630 0.00 0.00 0.00 2.71
204 205 8.434661 CCAAATCGACACTTTCCAAAAATAATG 58.565 33.333 0.00 0.00 0.00 1.90
205 206 8.147704 ACCAAATCGACACTTTCCAAAAATAAT 58.852 29.630 0.00 0.00 0.00 1.28
206 207 7.493367 ACCAAATCGACACTTTCCAAAAATAA 58.507 30.769 0.00 0.00 0.00 1.40
207 208 7.045126 ACCAAATCGACACTTTCCAAAAATA 57.955 32.000 0.00 0.00 0.00 1.40
208 209 5.912892 ACCAAATCGACACTTTCCAAAAAT 58.087 33.333 0.00 0.00 0.00 1.82
209 210 5.331876 ACCAAATCGACACTTTCCAAAAA 57.668 34.783 0.00 0.00 0.00 1.94
210 211 4.993029 ACCAAATCGACACTTTCCAAAA 57.007 36.364 0.00 0.00 0.00 2.44
211 212 4.399618 TCAACCAAATCGACACTTTCCAAA 59.600 37.500 0.00 0.00 0.00 3.28
212 213 3.948473 TCAACCAAATCGACACTTTCCAA 59.052 39.130 0.00 0.00 0.00 3.53
213 214 3.546724 TCAACCAAATCGACACTTTCCA 58.453 40.909 0.00 0.00 0.00 3.53
214 215 3.564225 ACTCAACCAAATCGACACTTTCC 59.436 43.478 0.00 0.00 0.00 3.13
215 216 4.813296 ACTCAACCAAATCGACACTTTC 57.187 40.909 0.00 0.00 0.00 2.62
216 217 6.687081 TTAACTCAACCAAATCGACACTTT 57.313 33.333 0.00 0.00 0.00 2.66
217 218 6.668323 CATTAACTCAACCAAATCGACACTT 58.332 36.000 0.00 0.00 0.00 3.16
218 219 5.334879 GCATTAACTCAACCAAATCGACACT 60.335 40.000 0.00 0.00 0.00 3.55
219 220 4.851558 GCATTAACTCAACCAAATCGACAC 59.148 41.667 0.00 0.00 0.00 3.67
220 221 4.517075 TGCATTAACTCAACCAAATCGACA 59.483 37.500 0.00 0.00 0.00 4.35
221 222 4.851558 GTGCATTAACTCAACCAAATCGAC 59.148 41.667 0.00 0.00 0.00 4.20
222 223 4.377943 CGTGCATTAACTCAACCAAATCGA 60.378 41.667 0.00 0.00 0.00 3.59
223 224 3.845775 CGTGCATTAACTCAACCAAATCG 59.154 43.478 0.00 0.00 0.00 3.34
224 225 3.608073 GCGTGCATTAACTCAACCAAATC 59.392 43.478 0.00 0.00 0.00 2.17
225 226 3.574614 GCGTGCATTAACTCAACCAAAT 58.425 40.909 0.00 0.00 0.00 2.32
226 227 2.603412 CGCGTGCATTAACTCAACCAAA 60.603 45.455 0.00 0.00 0.00 3.28
227 228 1.069568 CGCGTGCATTAACTCAACCAA 60.070 47.619 0.00 0.00 0.00 3.67
228 229 0.515127 CGCGTGCATTAACTCAACCA 59.485 50.000 0.00 0.00 0.00 3.67
229 230 0.515564 ACGCGTGCATTAACTCAACC 59.484 50.000 12.93 0.00 0.00 3.77
230 231 2.309898 AACGCGTGCATTAACTCAAC 57.690 45.000 14.98 0.00 0.00 3.18
231 232 4.469625 TTTAACGCGTGCATTAACTCAA 57.530 36.364 14.98 0.00 0.00 3.02
232 233 4.399112 CATTTAACGCGTGCATTAACTCA 58.601 39.130 14.98 0.00 0.00 3.41
233 234 3.783943 CCATTTAACGCGTGCATTAACTC 59.216 43.478 14.98 0.00 0.00 3.01
234 235 3.437395 TCCATTTAACGCGTGCATTAACT 59.563 39.130 14.98 0.00 0.00 2.24
235 236 3.749404 TCCATTTAACGCGTGCATTAAC 58.251 40.909 14.98 0.00 0.00 2.01
236 237 4.593157 GATCCATTTAACGCGTGCATTAA 58.407 39.130 14.98 4.47 0.00 1.40
237 238 3.302805 CGATCCATTTAACGCGTGCATTA 60.303 43.478 14.98 0.00 0.00 1.90
238 239 2.538737 CGATCCATTTAACGCGTGCATT 60.539 45.455 14.98 0.00 0.00 3.56
239 240 1.003972 CGATCCATTTAACGCGTGCAT 60.004 47.619 14.98 1.71 0.00 3.96
240 241 0.371989 CGATCCATTTAACGCGTGCA 59.628 50.000 14.98 0.00 0.00 4.57
241 242 0.315869 CCGATCCATTTAACGCGTGC 60.316 55.000 14.98 0.00 0.00 5.34
242 243 0.315869 GCCGATCCATTTAACGCGTG 60.316 55.000 14.98 0.00 0.00 5.34
243 244 1.433837 GGCCGATCCATTTAACGCGT 61.434 55.000 5.58 5.58 34.01 6.01
244 245 1.278637 GGCCGATCCATTTAACGCG 59.721 57.895 3.53 3.53 34.01 6.01
245 246 1.098712 TGGGCCGATCCATTTAACGC 61.099 55.000 0.00 0.00 36.21 4.84
246 247 1.266718 CATGGGCCGATCCATTTAACG 59.733 52.381 0.00 0.00 44.55 3.18
247 248 2.306847 ACATGGGCCGATCCATTTAAC 58.693 47.619 0.00 0.00 44.55 2.01
248 249 2.746279 ACATGGGCCGATCCATTTAA 57.254 45.000 0.00 0.00 44.55 1.52
249 250 2.746279 AACATGGGCCGATCCATTTA 57.254 45.000 0.00 0.00 44.55 1.40
250 251 2.091885 ACTAACATGGGCCGATCCATTT 60.092 45.455 0.00 7.68 44.55 2.32
251 252 1.494721 ACTAACATGGGCCGATCCATT 59.505 47.619 0.00 0.00 44.55 3.16
253 254 0.468226 GACTAACATGGGCCGATCCA 59.532 55.000 0.00 0.00 41.60 3.41
254 255 0.468226 TGACTAACATGGGCCGATCC 59.532 55.000 0.00 0.00 0.00 3.36
255 256 2.550830 ATGACTAACATGGGCCGATC 57.449 50.000 0.00 0.00 37.87 3.69
264 265 5.879223 CCTTTCTCTCAAGCATGACTAACAT 59.121 40.000 0.00 0.00 40.17 2.71
265 266 5.221722 ACCTTTCTCTCAAGCATGACTAACA 60.222 40.000 0.00 0.00 0.00 2.41
266 267 5.241662 ACCTTTCTCTCAAGCATGACTAAC 58.758 41.667 0.00 0.00 0.00 2.34
267 268 5.482908 GACCTTTCTCTCAAGCATGACTAA 58.517 41.667 0.00 0.00 0.00 2.24
268 269 4.380973 CGACCTTTCTCTCAAGCATGACTA 60.381 45.833 0.00 0.00 0.00 2.59
269 270 3.616076 CGACCTTTCTCTCAAGCATGACT 60.616 47.826 0.00 0.00 0.00 3.41
270 271 2.670414 CGACCTTTCTCTCAAGCATGAC 59.330 50.000 0.00 0.00 0.00 3.06
271 272 2.932622 GCGACCTTTCTCTCAAGCATGA 60.933 50.000 0.00 0.00 0.00 3.07
272 273 1.396301 GCGACCTTTCTCTCAAGCATG 59.604 52.381 0.00 0.00 0.00 4.06
273 274 1.677217 GGCGACCTTTCTCTCAAGCAT 60.677 52.381 0.00 0.00 0.00 3.79
274 275 0.320771 GGCGACCTTTCTCTCAAGCA 60.321 55.000 0.00 0.00 0.00 3.91
275 276 0.036858 AGGCGACCTTTCTCTCAAGC 60.037 55.000 0.00 0.00 0.00 4.01
276 277 1.001406 ACAGGCGACCTTTCTCTCAAG 59.999 52.381 0.00 0.00 0.00 3.02
277 278 1.048601 ACAGGCGACCTTTCTCTCAA 58.951 50.000 0.00 0.00 0.00 3.02
278 279 1.919240 TACAGGCGACCTTTCTCTCA 58.081 50.000 0.00 0.00 0.00 3.27
279 280 2.417515 CCTTACAGGCGACCTTTCTCTC 60.418 54.545 0.00 0.00 0.00 3.20
280 281 1.550976 CCTTACAGGCGACCTTTCTCT 59.449 52.381 0.00 0.00 0.00 3.10
281 282 2.011540 CCTTACAGGCGACCTTTCTC 57.988 55.000 0.00 0.00 0.00 2.87
292 293 1.709147 GCATGTGAGCGCCTTACAGG 61.709 60.000 2.29 10.21 33.67 4.00
293 294 1.717937 GCATGTGAGCGCCTTACAG 59.282 57.895 2.29 2.99 33.67 2.74
294 295 3.889227 GCATGTGAGCGCCTTACA 58.111 55.556 2.29 7.71 34.62 2.41
302 303 7.164171 CACAAAACTTATATTACGCATGTGAGC 59.836 37.037 14.43 0.00 37.27 4.26
303 304 7.639850 CCACAAAACTTATATTACGCATGTGAG 59.360 37.037 14.43 0.00 37.27 3.51
304 305 7.414651 CCCACAAAACTTATATTACGCATGTGA 60.415 37.037 14.43 0.00 37.27 3.58
305 306 6.690957 CCCACAAAACTTATATTACGCATGTG 59.309 38.462 4.30 4.30 35.45 3.21
306 307 6.600032 TCCCACAAAACTTATATTACGCATGT 59.400 34.615 0.00 0.00 0.00 3.21
307 308 7.022055 TCCCACAAAACTTATATTACGCATG 57.978 36.000 0.00 0.00 0.00 4.06
308 309 6.262273 CCTCCCACAAAACTTATATTACGCAT 59.738 38.462 0.00 0.00 0.00 4.73
309 310 5.587043 CCTCCCACAAAACTTATATTACGCA 59.413 40.000 0.00 0.00 0.00 5.24
310 311 5.587443 ACCTCCCACAAAACTTATATTACGC 59.413 40.000 0.00 0.00 0.00 4.42
311 312 6.819649 TCACCTCCCACAAAACTTATATTACG 59.180 38.462 0.00 0.00 0.00 3.18
312 313 7.282450 CCTCACCTCCCACAAAACTTATATTAC 59.718 40.741 0.00 0.00 0.00 1.89
313 314 7.343357 CCTCACCTCCCACAAAACTTATATTA 58.657 38.462 0.00 0.00 0.00 0.98
314 315 6.187682 CCTCACCTCCCACAAAACTTATATT 58.812 40.000 0.00 0.00 0.00 1.28
315 316 5.755849 CCTCACCTCCCACAAAACTTATAT 58.244 41.667 0.00 0.00 0.00 0.86
316 317 4.566907 GCCTCACCTCCCACAAAACTTATA 60.567 45.833 0.00 0.00 0.00 0.98
317 318 3.814316 GCCTCACCTCCCACAAAACTTAT 60.814 47.826 0.00 0.00 0.00 1.73
318 319 2.488347 GCCTCACCTCCCACAAAACTTA 60.488 50.000 0.00 0.00 0.00 2.24
319 320 1.754201 GCCTCACCTCCCACAAAACTT 60.754 52.381 0.00 0.00 0.00 2.66
320 321 0.178990 GCCTCACCTCCCACAAAACT 60.179 55.000 0.00 0.00 0.00 2.66
321 322 1.515521 CGCCTCACCTCCCACAAAAC 61.516 60.000 0.00 0.00 0.00 2.43
322 323 1.228124 CGCCTCACCTCCCACAAAA 60.228 57.895 0.00 0.00 0.00 2.44
323 324 2.111999 CTCGCCTCACCTCCCACAAA 62.112 60.000 0.00 0.00 0.00 2.83
324 325 2.525629 TCGCCTCACCTCCCACAA 60.526 61.111 0.00 0.00 0.00 3.33
325 326 2.805313 ATCTCGCCTCACCTCCCACA 62.805 60.000 0.00 0.00 0.00 4.17
326 327 1.617947 AATCTCGCCTCACCTCCCAC 61.618 60.000 0.00 0.00 0.00 4.61
327 328 0.032515 TAATCTCGCCTCACCTCCCA 60.033 55.000 0.00 0.00 0.00 4.37
328 329 1.273886 GATAATCTCGCCTCACCTCCC 59.726 57.143 0.00 0.00 0.00 4.30
329 330 1.964223 TGATAATCTCGCCTCACCTCC 59.036 52.381 0.00 0.00 0.00 4.30
330 331 3.181475 TGTTGATAATCTCGCCTCACCTC 60.181 47.826 0.00 0.00 0.00 3.85
331 332 2.766263 TGTTGATAATCTCGCCTCACCT 59.234 45.455 0.00 0.00 0.00 4.00
332 333 2.866762 GTGTTGATAATCTCGCCTCACC 59.133 50.000 0.00 0.00 0.00 4.02
333 334 3.521560 TGTGTTGATAATCTCGCCTCAC 58.478 45.455 0.00 0.00 0.00 3.51
334 335 3.885724 TGTGTTGATAATCTCGCCTCA 57.114 42.857 0.00 0.00 0.00 3.86
335 336 4.926238 CCTATGTGTTGATAATCTCGCCTC 59.074 45.833 0.00 0.00 0.00 4.70
336 337 4.588951 TCCTATGTGTTGATAATCTCGCCT 59.411 41.667 0.00 0.00 0.00 5.52
337 338 4.883083 TCCTATGTGTTGATAATCTCGCC 58.117 43.478 0.00 0.00 0.00 5.54
338 339 5.403766 CACTCCTATGTGTTGATAATCTCGC 59.596 44.000 0.00 0.00 33.61 5.03
339 340 5.923114 CCACTCCTATGTGTTGATAATCTCG 59.077 44.000 0.00 0.00 36.30 4.04
340 341 7.055667 TCCACTCCTATGTGTTGATAATCTC 57.944 40.000 0.00 0.00 36.30 2.75
341 342 7.623999 ATCCACTCCTATGTGTTGATAATCT 57.376 36.000 0.00 0.00 36.30 2.40
342 343 8.682936 AAATCCACTCCTATGTGTTGATAATC 57.317 34.615 0.00 0.00 36.30 1.75
343 344 9.479549 AAAAATCCACTCCTATGTGTTGATAAT 57.520 29.630 0.00 0.00 36.30 1.28
344 345 8.877864 AAAAATCCACTCCTATGTGTTGATAA 57.122 30.769 0.00 0.00 36.30 1.75
399 400 8.682710 CCCTTCGAATGGAATAGTAAATTTGAA 58.317 33.333 13.73 0.00 33.46 2.69
400 401 7.284489 CCCCTTCGAATGGAATAGTAAATTTGA 59.716 37.037 19.81 0.00 33.26 2.69
439 440 3.140814 GCGGGGCTTGGGAACATC 61.141 66.667 0.00 0.00 42.32 3.06
447 448 1.507141 GATATTGGACGCGGGGCTTG 61.507 60.000 12.47 0.00 0.00 4.01
448 449 1.227853 GATATTGGACGCGGGGCTT 60.228 57.895 12.47 0.00 0.00 4.35
450 451 2.110213 TGATATTGGACGCGGGGC 59.890 61.111 12.47 0.00 0.00 5.80
451 452 1.145156 TGTGATATTGGACGCGGGG 59.855 57.895 12.47 0.00 0.00 5.73
522 525 1.668419 GCTGTAGCATCCGGACATTT 58.332 50.000 6.12 0.00 41.59 2.32
576 579 0.956633 GTCCCGGAAAAAGTGGTTCC 59.043 55.000 0.73 0.00 41.08 3.62
579 582 1.152138 GGGTCCCGGAAAAAGTGGT 59.848 57.895 0.73 0.00 0.00 4.16
588 591 3.082795 ATCGAGGATGGGTCCCGGA 62.083 63.158 0.73 0.00 46.34 5.14
599 602 3.785859 GGCTGTGCCCATCGAGGA 61.786 66.667 0.00 0.00 44.06 3.71
651 655 4.072088 GTTGGTCAAGTCGCGCGG 62.072 66.667 31.69 14.23 0.00 6.46
670 674 1.509923 GTCCCGGTCGTCTCGATTT 59.490 57.895 0.00 0.00 38.42 2.17
697 702 0.958382 TCGCCATCCCGTTTCCTTTG 60.958 55.000 0.00 0.00 0.00 2.77
1078 1092 2.023041 GTCTCTACTCGGCGCGTC 59.977 66.667 5.51 3.30 0.00 5.19
1081 1095 4.908877 GCGGTCTCTACTCGGCGC 62.909 72.222 0.00 0.00 0.00 6.53
1200 1214 3.421687 GACGCTGTAGTACCCCGCC 62.422 68.421 8.94 0.00 0.00 6.13
1203 1217 1.673808 CCAGGACGCTGTAGTACCCC 61.674 65.000 0.00 0.00 0.00 4.95
1206 1220 1.141234 GGCCAGGACGCTGTAGTAC 59.859 63.158 0.00 0.00 0.00 2.73
1272 1286 3.633094 CTGGCAGTCGACCCTCACG 62.633 68.421 13.01 0.00 0.00 4.35
1334 1348 0.109597 GCAGAAACACGGCCAGATTG 60.110 55.000 2.24 0.00 33.80 2.67
1344 1358 4.497507 GGGAAGTAAACACAGCAGAAACAC 60.498 45.833 0.00 0.00 0.00 3.32
1354 1368 2.691011 GCACCAAAGGGAAGTAAACACA 59.309 45.455 0.00 0.00 38.05 3.72
1355 1369 2.035449 GGCACCAAAGGGAAGTAAACAC 59.965 50.000 0.00 0.00 38.05 3.32
1357 1371 1.268625 CGGCACCAAAGGGAAGTAAAC 59.731 52.381 0.00 0.00 38.05 2.01
1358 1372 1.143277 TCGGCACCAAAGGGAAGTAAA 59.857 47.619 0.00 0.00 38.05 2.01
1360 1374 0.988832 ATCGGCACCAAAGGGAAGTA 59.011 50.000 0.00 0.00 38.05 2.24
1361 1375 0.988832 TATCGGCACCAAAGGGAAGT 59.011 50.000 0.00 0.00 38.05 3.01
1362 1376 1.065418 ACTATCGGCACCAAAGGGAAG 60.065 52.381 0.00 0.00 38.05 3.46
1363 1377 0.988832 ACTATCGGCACCAAAGGGAA 59.011 50.000 0.00 0.00 38.05 3.97
1373 1395 1.596603 CATGGCAATGACTATCGGCA 58.403 50.000 0.00 0.00 35.67 5.69
1380 1402 1.271379 CAACACAGCATGGCAATGACT 59.729 47.619 4.87 0.00 43.62 3.41
1381 1403 1.000060 ACAACACAGCATGGCAATGAC 60.000 47.619 4.87 0.00 43.62 3.06
1386 1408 1.794151 CGGAACAACACAGCATGGCA 61.794 55.000 0.00 0.00 43.62 4.92
1402 1424 0.470456 ACCACCCAGTTGTACTCGGA 60.470 55.000 0.00 0.00 30.52 4.55
1405 1427 1.140252 ACACACCACCCAGTTGTACTC 59.860 52.381 0.00 0.00 0.00 2.59
1413 1435 1.473677 CATGCATTACACACCACCCAG 59.526 52.381 0.00 0.00 0.00 4.45
1419 1441 4.082841 TGACATCAACATGCATTACACACC 60.083 41.667 0.00 0.00 32.57 4.16
1445 1467 7.552050 AATCACCAAAATTCCACCAAATAGA 57.448 32.000 0.00 0.00 0.00 1.98
1448 1470 9.835389 CATATAATCACCAAAATTCCACCAAAT 57.165 29.630 0.00 0.00 0.00 2.32
1506 1554 2.796593 GGTCAGCAAGCAACACAAAATC 59.203 45.455 0.00 0.00 0.00 2.17
1509 1557 1.473258 AGGTCAGCAAGCAACACAAA 58.527 45.000 0.00 0.00 0.00 2.83
1512 1560 2.195922 CAAAAGGTCAGCAAGCAACAC 58.804 47.619 0.00 0.00 0.00 3.32
1548 1596 2.349155 CGTCTTACGGAACTTTGCAACC 60.349 50.000 0.00 0.00 38.08 3.77
1581 1629 5.398603 TGTCAATTTGGTATCGGCATTTT 57.601 34.783 0.00 0.00 0.00 1.82
1588 1636 8.859156 CCATAAAAACTTGTCAATTTGGTATCG 58.141 33.333 0.00 0.00 0.00 2.92
1602 1650 6.209391 ACCAGATCCTGAACCATAAAAACTTG 59.791 38.462 0.00 0.00 32.44 3.16
1614 1662 2.479566 TCAAGCACCAGATCCTGAAC 57.520 50.000 0.00 0.00 32.44 3.18
1631 1679 3.495434 ACACCCCTACGAAACAATTCA 57.505 42.857 0.00 0.00 35.15 2.57
1632 1680 3.057806 CCAACACCCCTACGAAACAATTC 60.058 47.826 0.00 0.00 0.00 2.17
1642 1690 2.167662 CACAAATCCCAACACCCCTAC 58.832 52.381 0.00 0.00 0.00 3.18
1645 1693 0.966179 GACACAAATCCCAACACCCC 59.034 55.000 0.00 0.00 0.00 4.95
1646 1694 1.613437 CTGACACAAATCCCAACACCC 59.387 52.381 0.00 0.00 0.00 4.61
1655 1703 7.948278 AGTTCTACAGTAACTGACACAAATC 57.052 36.000 0.00 0.00 35.87 2.17
1662 1710 6.505272 ACACAGAAGTTCTACAGTAACTGAC 58.495 40.000 4.74 0.00 37.26 3.51
1670 1718 9.347934 CAAATAGACTACACAGAAGTTCTACAG 57.652 37.037 4.74 3.24 0.00 2.74
1687 1736 9.927081 AGGAAATGAATGATAACCAAATAGACT 57.073 29.630 0.00 0.00 0.00 3.24
1700 1749 5.982890 AACGAAACCAGGAAATGAATGAT 57.017 34.783 0.00 0.00 0.00 2.45
1713 1762 9.226606 ACTTCTATGAATTGAATAACGAAACCA 57.773 29.630 0.00 0.00 0.00 3.67
1756 1805 5.570320 ACATGTTTTGCTCTGTATACCCTT 58.430 37.500 0.00 0.00 0.00 3.95
1775 1824 6.203145 TGCAAGATCAAACCAAAATCAACATG 59.797 34.615 0.00 0.00 0.00 3.21
1780 1829 5.856156 ACATGCAAGATCAAACCAAAATCA 58.144 33.333 0.00 0.00 0.00 2.57
1799 1848 8.542132 CACAAAATGAGAAACCAACTTAACATG 58.458 33.333 0.00 0.00 0.00 3.21
1811 1860 8.894864 GCATTTAAATTGCACAAAATGAGAAAC 58.105 29.630 18.93 4.78 40.24 2.78
1871 1920 6.353323 TGACTAATAAATCCAAAGATCGCCA 58.647 36.000 0.00 0.00 0.00 5.69
1987 2038 7.490725 CAGAGACCTTATGAACTGTGATTACTG 59.509 40.741 0.00 0.00 0.00 2.74
2029 2080 9.927081 ACAAGACCAAAGAATTATAATCCTCAT 57.073 29.630 0.00 0.00 0.00 2.90
2132 2183 7.359262 TGAAACCATTAACACAAGACGATAG 57.641 36.000 0.00 0.00 46.19 2.08
2170 2223 4.293662 AGGTGAGAGAAATCAGAAACCC 57.706 45.455 0.00 0.00 0.00 4.11
2194 2247 7.636259 TTTCCTGCATATTTTTGAAAGAACG 57.364 32.000 0.00 0.00 0.00 3.95
2256 2309 9.253832 TCCAAGAAATTAGCCATTTTAATCTCA 57.746 29.630 0.00 0.00 35.02 3.27
2267 2320 4.650588 CCCATGATTCCAAGAAATTAGCCA 59.349 41.667 0.00 0.00 0.00 4.75
2439 2492 7.570140 GCAACTTGGTAATGATCATCATACTCG 60.570 40.741 9.06 4.71 35.76 4.18
2493 2546 5.372343 TGGTATTATGAGCAACCATCTGT 57.628 39.130 0.00 0.00 37.09 3.41
2532 2585 4.592485 ATTATAGAGGTGTCAGGAAGCG 57.408 45.455 0.00 0.00 0.00 4.68
2584 2639 6.348540 GCCGAAATGAAGTTGATTTACTGACT 60.349 38.462 0.00 0.00 0.00 3.41
2615 2670 6.981559 ACCGAAATGAACTTTAGATAGAGAGC 59.018 38.462 0.00 0.00 0.00 4.09
2681 2736 5.810095 AGTGAAAAGGAGGAGGTAAATGAG 58.190 41.667 0.00 0.00 0.00 2.90
2682 2737 5.548056 AGAGTGAAAAGGAGGAGGTAAATGA 59.452 40.000 0.00 0.00 0.00 2.57
2843 2898 2.154462 CCAAGGCTACAGTTGGAACAG 58.846 52.381 0.00 0.00 45.35 3.16
2870 2925 8.672815 CAACCAACAAAACAAAAATGGTTATCT 58.327 29.630 7.59 0.00 46.40 1.98
2882 2938 4.026744 TGAGGGATCAACCAACAAAACAA 58.973 39.130 0.00 0.00 41.20 2.83
2883 2939 3.636300 CTGAGGGATCAACCAACAAAACA 59.364 43.478 0.00 0.00 41.20 2.83
2884 2940 3.552890 GCTGAGGGATCAACCAACAAAAC 60.553 47.826 0.00 0.00 41.20 2.43
3035 3091 2.210116 GAGTTTCTCCGTTGACTGCAA 58.790 47.619 0.00 0.00 0.00 4.08
3091 3147 4.337555 AGATGCATCCTGTTTAATGTCTGC 59.662 41.667 23.06 0.00 0.00 4.26
3097 3153 3.887716 GGAGCAGATGCATCCTGTTTAAT 59.112 43.478 23.06 0.00 45.16 1.40
3162 3221 0.322187 TTTGCTTAGGCGGTTCTCCC 60.322 55.000 0.00 0.00 42.25 4.30
3230 3289 9.974980 TTACCATCAAGTTAAAACAAAGGATTC 57.025 29.630 0.00 0.00 0.00 2.52
3238 3297 7.439655 GCAACCAATTACCATCAAGTTAAAACA 59.560 33.333 0.00 0.00 0.00 2.83
3253 3312 5.466393 AGCTGACAAATTTGCAACCAATTAC 59.534 36.000 18.12 0.00 0.00 1.89
3258 3318 2.823984 CAGCTGACAAATTTGCAACCA 58.176 42.857 18.12 9.86 0.00 3.67
3405 3465 0.976641 GGGACACTGACATCCAGACA 59.023 55.000 0.00 0.00 45.78 3.41
3422 3482 3.728385 AAGAAACCTTCATCCTCAGGG 57.272 47.619 0.00 0.00 34.02 4.45
3463 3523 5.300752 GTCTCAACAAAGGAGTCATGAGAA 58.699 41.667 0.00 0.00 43.30 2.87
3560 3623 5.479306 GGTGTCAACAGAGAACAGCTAATA 58.521 41.667 0.00 0.00 0.00 0.98
3580 3643 0.322546 GTGGTAAAGGGCAGAGGGTG 60.323 60.000 0.00 0.00 0.00 4.61
3588 3651 1.474330 CATTCCCAGTGGTAAAGGGC 58.526 55.000 8.74 0.00 42.52 5.19
3758 3825 2.781945 AATGCCTAGCGCTTAATTGC 57.218 45.000 18.68 12.20 38.78 3.56
3759 3826 4.671377 TCAAAATGCCTAGCGCTTAATTG 58.329 39.130 18.68 11.80 38.78 2.32
3760 3827 4.734695 GCTCAAAATGCCTAGCGCTTAATT 60.735 41.667 18.68 7.99 38.78 1.40
3761 3828 3.243201 GCTCAAAATGCCTAGCGCTTAAT 60.243 43.478 18.68 1.03 38.78 1.40
3765 3832 1.379642 GGCTCAAAATGCCTAGCGCT 61.380 55.000 17.26 17.26 46.38 5.92
3865 3943 4.039609 AGCCAAAAGCCCATAAATAGATGC 59.960 41.667 0.00 0.00 45.47 3.91
3881 3959 3.625649 AGACAAAAGCCAAAGCCAAAA 57.374 38.095 0.00 0.00 41.25 2.44
3885 3963 4.245660 GGAATAAGACAAAAGCCAAAGCC 58.754 43.478 0.00 0.00 41.25 4.35
4000 4091 6.782298 TTTTCATGCAATATGTGTTTGGTG 57.218 33.333 0.00 0.00 0.00 4.17
4005 4096 7.613585 TCCAGAATTTTCATGCAATATGTGTT 58.386 30.769 0.00 0.00 0.00 3.32
4101 4193 8.427012 CAAAGCATGTGTACATATTCAAACAAC 58.573 33.333 1.82 0.00 34.26 3.32
4116 4208 1.967319 ACCGAAGACAAAGCATGTGT 58.033 45.000 0.00 0.00 41.12 3.72
4117 4209 3.044986 CAAACCGAAGACAAAGCATGTG 58.955 45.455 0.00 0.00 44.12 3.21
4133 4225 5.973565 CAGAATGTGAGACAAGAAACAAACC 59.026 40.000 0.00 0.00 0.00 3.27
4155 4252 6.090628 ACTGCAATACAAAACACACAAAACAG 59.909 34.615 0.00 0.00 0.00 3.16
4264 4366 3.831911 GTGGAGGGGAAAATCATCAAACA 59.168 43.478 0.00 0.00 0.00 2.83
4305 4411 1.202663 AGCAGATGGACAGCTAGCATG 60.203 52.381 18.83 14.32 39.51 4.06
4306 4412 1.129917 AGCAGATGGACAGCTAGCAT 58.870 50.000 18.83 4.01 39.51 3.79
4307 4413 0.177373 CAGCAGATGGACAGCTAGCA 59.823 55.000 18.83 0.00 39.28 3.49
4308 4414 1.159098 GCAGCAGATGGACAGCTAGC 61.159 60.000 6.62 6.62 39.28 3.42
4358 4464 5.480073 AGCAAGAAAAATACAGCATTACCCA 59.520 36.000 0.00 0.00 0.00 4.51
4400 4507 8.593945 ATCTAAAGGAACATGCCAGATTTAAA 57.406 30.769 0.00 0.00 0.00 1.52
4467 4575 3.441572 CCAGGTCAGAAAATCCACATGTC 59.558 47.826 0.00 0.00 0.00 3.06
4476 4584 7.074653 TCACTTAACTACCAGGTCAGAAAAT 57.925 36.000 0.00 0.00 0.00 1.82
4502 4610 7.952671 TGCACTTTACATACACCCAAAAATAA 58.047 30.769 0.00 0.00 0.00 1.40
4504 4612 6.412362 TGCACTTTACATACACCCAAAAAT 57.588 33.333 0.00 0.00 0.00 1.82
4513 4621 3.749088 CGGTTTCCTGCACTTTACATACA 59.251 43.478 0.00 0.00 0.00 2.29
4524 4632 2.418368 ATATTGCTCGGTTTCCTGCA 57.582 45.000 0.00 0.00 0.00 4.41
4558 4666 5.009854 ACCAAAAGTATGCATAATGCCAC 57.990 39.130 8.28 0.00 44.23 5.01
4908 5017 3.858135 ACCCAACAAGAGGAACTAGAGA 58.142 45.455 0.00 0.00 41.55 3.10
4914 5023 2.945456 AGGAAACCCAACAAGAGGAAC 58.055 47.619 0.00 0.00 0.00 3.62
4920 5029 5.912892 ACACAAATTAGGAAACCCAACAAG 58.087 37.500 0.00 0.00 0.00 3.16
5094 5204 8.577296 GCATATTCTTTATAACCCCCTTTCTTC 58.423 37.037 0.00 0.00 0.00 2.87
5271 5381 9.950496 ATAAAGTCCATGGCTATTCTATGTAAG 57.050 33.333 6.96 0.00 32.37 2.34
5636 5746 9.350357 CTACAGTCATGAGGAAATCAAAATTTG 57.650 33.333 0.00 0.00 42.53 2.32
5711 5821 6.014647 AGTACAGAACAAGACATACCCTACA 58.985 40.000 0.00 0.00 0.00 2.74
5824 5934 4.455877 GGGTACTTGACAGTGGAGAAATTG 59.544 45.833 0.00 0.00 34.06 2.32
6182 6459 4.100084 CCAGGCCGCACCAGATCA 62.100 66.667 0.00 0.00 43.14 2.92
6280 6557 6.420903 GCAAAAACACTAAAAAGAGTCCCATC 59.579 38.462 0.00 0.00 0.00 3.51
6281 6558 6.098266 AGCAAAAACACTAAAAAGAGTCCCAT 59.902 34.615 0.00 0.00 0.00 4.00
6282 6559 5.420739 AGCAAAAACACTAAAAAGAGTCCCA 59.579 36.000 0.00 0.00 0.00 4.37
6283 6560 5.902681 AGCAAAAACACTAAAAAGAGTCCC 58.097 37.500 0.00 0.00 0.00 4.46
6286 6563 8.682710 TCATGTAGCAAAAACACTAAAAAGAGT 58.317 29.630 0.00 0.00 0.00 3.24
6287 6564 9.683069 ATCATGTAGCAAAAACACTAAAAAGAG 57.317 29.630 0.00 0.00 0.00 2.85
6288 6565 9.677567 GATCATGTAGCAAAAACACTAAAAAGA 57.322 29.630 0.00 0.00 0.00 2.52
6289 6566 8.629986 CGATCATGTAGCAAAAACACTAAAAAG 58.370 33.333 0.00 0.00 0.00 2.27
6290 6567 8.132362 ACGATCATGTAGCAAAAACACTAAAAA 58.868 29.630 0.00 0.00 0.00 1.94
6332 6609 9.793252 CATTCTTTTCCCATGTTTAGTTCATAG 57.207 33.333 0.00 0.00 0.00 2.23
6333 6610 8.748412 CCATTCTTTTCCCATGTTTAGTTCATA 58.252 33.333 0.00 0.00 0.00 2.15
6334 6611 7.454380 TCCATTCTTTTCCCATGTTTAGTTCAT 59.546 33.333 0.00 0.00 0.00 2.57
6350 6627 8.641498 ATCAACTAACACTGATCCATTCTTTT 57.359 30.769 0.00 0.00 0.00 2.27
6382 6659 4.398988 ACTTTTGACAGTGTGCTCAAATGA 59.601 37.500 19.82 5.17 36.51 2.57
6391 6668 5.862924 ATCGGAATACTTTTGACAGTGTG 57.137 39.130 0.00 0.00 0.00 3.82
6463 6740 4.021456 CCCAGATATATGTTAGACGCCACA 60.021 45.833 0.00 0.00 0.00 4.17
6575 6862 4.530553 TGCTAATTGTAGACCAGGAACAGA 59.469 41.667 0.00 0.00 0.00 3.41
6591 6878 2.028112 TCTGAAGTCTGGCGTGCTAATT 60.028 45.455 0.00 0.00 0.00 1.40
6677 6967 1.806542 CAAGCCTTCACATACAGCGTT 59.193 47.619 0.00 0.00 0.00 4.84
6696 6986 0.537143 GCCATGGACCTGTGTGAACA 60.537 55.000 18.40 0.00 0.00 3.18
6769 7067 0.454600 AGCCGTGTGTATGTCTACCG 59.545 55.000 0.00 0.00 0.00 4.02
6827 7125 5.392595 GGCACTTCAAAACTAGTGACAAACA 60.393 40.000 0.00 0.00 39.87 2.83
6833 7131 2.878406 GCTGGCACTTCAAAACTAGTGA 59.122 45.455 0.00 0.00 34.50 3.41
6834 7132 2.880890 AGCTGGCACTTCAAAACTAGTG 59.119 45.455 0.00 0.00 35.57 2.74
6835 7133 3.214696 AGCTGGCACTTCAAAACTAGT 57.785 42.857 0.00 0.00 0.00 2.57
6938 7236 1.326213 ATCCGACAGTGGAGAGGCAG 61.326 60.000 0.00 0.00 42.45 4.85
6968 7266 3.993736 GACCGGAAATTTGGAAACCAATG 59.006 43.478 9.46 0.00 43.55 2.82
6974 7272 1.532007 CGTCGACCGGAAATTTGGAAA 59.468 47.619 9.46 0.00 0.00 3.13
6986 7284 4.394078 TCTGGAACGCGTCGACCG 62.394 66.667 14.44 20.16 40.40 4.79
6987 7285 2.504244 CTCTGGAACGCGTCGACC 60.504 66.667 14.44 17.18 0.00 4.79
6988 7286 2.504244 CCTCTGGAACGCGTCGAC 60.504 66.667 14.44 5.18 0.00 4.20
6989 7287 3.744719 CCCTCTGGAACGCGTCGA 61.745 66.667 14.44 6.26 0.00 4.20
6990 7288 4.796231 CCCCTCTGGAACGCGTCG 62.796 72.222 14.44 1.34 35.39 5.12
6995 7293 4.452733 GACCGCCCCTCTGGAACG 62.453 72.222 0.00 0.00 35.39 3.95
6996 7294 3.003763 AGACCGCCCCTCTGGAAC 61.004 66.667 0.00 0.00 35.39 3.62
6997 7295 3.003173 CAGACCGCCCCTCTGGAA 61.003 66.667 0.00 0.00 35.39 3.53
6998 7296 3.992641 TCAGACCGCCCCTCTGGA 61.993 66.667 0.00 0.00 36.55 3.86
6999 7297 3.775654 GTCAGACCGCCCCTCTGG 61.776 72.222 0.00 0.00 36.55 3.86
7000 7298 1.831652 AAAGTCAGACCGCCCCTCTG 61.832 60.000 0.00 0.00 37.14 3.35
7001 7299 1.536662 AAAGTCAGACCGCCCCTCT 60.537 57.895 0.00 0.00 0.00 3.69
7002 7300 1.376037 CAAAGTCAGACCGCCCCTC 60.376 63.158 0.00 0.00 0.00 4.30
7003 7301 2.750350 CAAAGTCAGACCGCCCCT 59.250 61.111 0.00 0.00 0.00 4.79
7004 7302 3.056328 GCAAAGTCAGACCGCCCC 61.056 66.667 0.00 0.00 0.00 5.80
7005 7303 3.423154 CGCAAAGTCAGACCGCCC 61.423 66.667 0.00 0.00 0.00 6.13
7006 7304 2.665185 ACGCAAAGTCAGACCGCC 60.665 61.111 0.00 0.00 0.00 6.13
7031 7329 4.856801 ACATCACATCCGGGCCGC 62.857 66.667 23.20 0.00 0.00 6.53
7032 7330 2.896854 CACATCACATCCGGGCCG 60.897 66.667 21.46 21.46 0.00 6.13
7033 7331 2.516930 CCACATCACATCCGGGCC 60.517 66.667 0.00 0.00 0.00 5.80
7034 7332 2.114670 CACCACATCACATCCGGGC 61.115 63.158 0.00 0.00 0.00 6.13
7035 7333 2.114670 GCACCACATCACATCCGGG 61.115 63.158 0.00 0.00 0.00 5.73
7036 7334 2.463620 CGCACCACATCACATCCGG 61.464 63.158 0.00 0.00 0.00 5.14
7037 7335 1.447663 TCGCACCACATCACATCCG 60.448 57.895 0.00 0.00 0.00 4.18
7038 7336 1.695893 CGTCGCACCACATCACATCC 61.696 60.000 0.00 0.00 0.00 3.51
7039 7337 1.014044 ACGTCGCACCACATCACATC 61.014 55.000 0.00 0.00 0.00 3.06
7040 7338 0.602638 AACGTCGCACCACATCACAT 60.603 50.000 0.00 0.00 0.00 3.21
7041 7339 1.218875 GAACGTCGCACCACATCACA 61.219 55.000 0.00 0.00 0.00 3.58
7042 7340 1.491563 GAACGTCGCACCACATCAC 59.508 57.895 0.00 0.00 0.00 3.06
7043 7341 2.019408 CGAACGTCGCACCACATCA 61.019 57.895 0.00 0.00 31.14 3.07
7044 7342 2.019951 ACGAACGTCGCACCACATC 61.020 57.895 7.21 0.00 45.12 3.06
7045 7343 2.028484 ACGAACGTCGCACCACAT 59.972 55.556 7.21 0.00 45.12 3.21
7046 7344 2.957489 CACGAACGTCGCACCACA 60.957 61.111 7.21 0.00 45.12 4.17
7047 7345 3.698463 CCACGAACGTCGCACCAC 61.698 66.667 7.21 0.00 45.12 4.16
7048 7346 4.210093 ACCACGAACGTCGCACCA 62.210 61.111 7.21 0.00 45.12 4.17
7049 7347 3.400590 GACCACGAACGTCGCACC 61.401 66.667 7.21 0.00 45.12 5.01
7050 7348 2.354305 AGACCACGAACGTCGCAC 60.354 61.111 7.21 0.00 45.12 5.34
7051 7349 2.354188 CAGACCACGAACGTCGCA 60.354 61.111 7.21 0.00 45.12 5.10
7052 7350 3.764049 GCAGACCACGAACGTCGC 61.764 66.667 7.21 0.00 45.12 5.19
7053 7351 3.458579 CGCAGACCACGAACGTCG 61.459 66.667 0.00 5.97 46.93 5.12
7054 7352 2.050714 TCGCAGACCACGAACGTC 60.051 61.111 0.00 0.00 36.44 4.34
7055 7353 2.050351 CTCGCAGACCACGAACGT 60.050 61.111 0.00 0.00 39.39 3.99
7056 7354 3.470567 GCTCGCAGACCACGAACG 61.471 66.667 0.00 0.00 39.39 3.95
7057 7355 3.470567 CGCTCGCAGACCACGAAC 61.471 66.667 0.00 0.00 39.39 3.95
7058 7356 4.717629 CCGCTCGCAGACCACGAA 62.718 66.667 0.00 0.00 39.39 3.85
7061 7359 3.414700 CAACCGCTCGCAGACCAC 61.415 66.667 0.00 0.00 0.00 4.16
7105 7403 4.326766 CAACGCCGCACAACCCAG 62.327 66.667 0.00 0.00 0.00 4.45
7108 7406 4.980903 CAGCAACGCCGCACAACC 62.981 66.667 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.