Multiple sequence alignment - TraesCS2B01G384000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G384000 chr2B 100.000 2824 0 0 1 2824 547835641 547838464 0.000000e+00 5216.0
1 TraesCS2B01G384000 chr2D 92.891 1674 79 18 541 2178 469167777 469169446 0.000000e+00 2396.0
2 TraesCS2B01G384000 chr2D 87.590 556 39 14 1 543 469167178 469167716 4.000000e-173 617.0
3 TraesCS2B01G384000 chr2D 95.000 40 2 0 2735 2774 53962654 53962615 2.350000e-06 63.9
4 TraesCS2B01G384000 chr2A 92.956 1519 64 16 703 2178 608937936 608939454 0.000000e+00 2172.0
5 TraesCS2B01G384000 chr2A 92.012 338 20 6 1 334 608929429 608929763 4.260000e-128 468.0
6 TraesCS2B01G384000 chr2A 97.207 179 5 0 541 719 608930328 608930506 1.270000e-78 303.0
7 TraesCS2B01G384000 chr2A 80.095 211 15 12 335 536 608930071 608930263 6.350000e-27 132.0
8 TraesCS2B01G384000 chr2A 90.722 97 6 2 2727 2822 306141130 306141224 2.950000e-25 126.0
9 TraesCS2B01G384000 chr2A 85.542 83 9 3 2535 2615 608941100 608941181 1.800000e-12 84.2
10 TraesCS2B01G384000 chr7B 98.864 88 1 0 2737 2824 606574432 606574519 1.050000e-34 158.0
11 TraesCS2B01G384000 chr7B 88.095 84 6 4 2739 2822 592742528 592742607 2.320000e-16 97.1
12 TraesCS2B01G384000 chr5B 98.864 88 1 0 2737 2824 513205713 513205626 1.050000e-34 158.0
13 TraesCS2B01G384000 chr5B 85.039 127 18 1 2611 2737 561689518 561689643 8.210000e-26 128.0
14 TraesCS2B01G384000 chr4B 97.727 88 2 0 2737 2824 31816086 31816173 4.870000e-33 152.0
15 TraesCS2B01G384000 chr1B 97.727 88 2 0 2737 2824 453517473 453517560 4.870000e-33 152.0
16 TraesCS2B01G384000 chr3B 95.455 88 3 1 2737 2824 703900656 703900742 3.790000e-29 139.0
17 TraesCS2B01G384000 chr1A 91.954 87 6 1 2737 2822 27204338 27204424 1.370000e-23 121.0
18 TraesCS2B01G384000 chr5A 95.455 66 2 1 2758 2822 488037899 488037834 1.380000e-18 104.0
19 TraesCS2B01G384000 chr3D 97.500 40 1 0 2053 2092 456024431 456024470 5.050000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G384000 chr2B 547835641 547838464 2823 False 5216.0 5216 100.000000 1 2824 1 chr2B.!!$F1 2823
1 TraesCS2B01G384000 chr2D 469167178 469169446 2268 False 1506.5 2396 90.240500 1 2178 2 chr2D.!!$F1 2177
2 TraesCS2B01G384000 chr2A 608937936 608941181 3245 False 1128.1 2172 89.249000 703 2615 2 chr2A.!!$F3 1912
3 TraesCS2B01G384000 chr2A 608929429 608930506 1077 False 301.0 468 89.771333 1 719 3 chr2A.!!$F2 718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 183 0.668535 GTTGGAGAGTTGTTGGCCAC 59.331 55.0 3.88 0.75 0.00 5.01 F
1043 1444 0.108472 CAGATGGAAGCGAGTCAGCA 60.108 55.0 9.14 0.00 40.15 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 1814 0.462047 GTGTTGCTACCATCCTCCGG 60.462 60.0 0.0 0.0 0.0 5.14 R
2755 4523 0.030101 ATTGTTTGGGACGTGCGTTG 59.970 50.0 0.0 0.0 0.0 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.930135 ACTATGATCCAAAATACGGCTTCT 58.070 37.500 0.00 0.00 0.00 2.85
91 94 6.909550 TCTTAAACAAACACCCTGCATTAT 57.090 33.333 0.00 0.00 0.00 1.28
94 97 5.543507 AAACAAACACCCTGCATTATCAA 57.456 34.783 0.00 0.00 0.00 2.57
95 98 4.519540 ACAAACACCCTGCATTATCAAC 57.480 40.909 0.00 0.00 0.00 3.18
176 179 2.554032 GGTCATGTTGGAGAGTTGTTGG 59.446 50.000 0.00 0.00 0.00 3.77
180 183 0.668535 GTTGGAGAGTTGTTGGCCAC 59.331 55.000 3.88 0.75 0.00 5.01
216 220 2.781681 ATAGTTACAGGTGGGTGTGC 57.218 50.000 0.00 0.00 31.46 4.57
219 223 1.165270 GTTACAGGTGGGTGTGCATC 58.835 55.000 0.00 0.00 31.46 3.91
227 233 1.227853 GGGTGTGCATCGGGGTATC 60.228 63.158 0.00 0.00 0.00 2.24
274 280 1.004745 GGGGATTCAAGCAAGGACTGA 59.995 52.381 0.00 0.00 0.00 3.41
317 323 3.235200 AGCCCTCTACAGTCCATGTATC 58.765 50.000 0.00 0.00 43.44 2.24
341 654 8.478775 TCTGTTGCCACTACTAGTCAATATAT 57.521 34.615 0.00 0.00 0.00 0.86
357 670 9.265901 AGTCAATATATTATGTCTTGTGTCTGC 57.734 33.333 0.00 0.00 0.00 4.26
363 676 0.953727 TGTCTTGTGTCTGCCATTGC 59.046 50.000 0.00 0.00 38.26 3.56
370 683 1.265095 GTGTCTGCCATTGCCATATCG 59.735 52.381 0.00 0.00 36.33 2.92
389 711 7.338196 CCATATCGTCTGAGAGATACCTGTAAT 59.662 40.741 5.30 0.00 32.85 1.89
411 733 9.267084 GTAATTTTATTCAAACACCACAACCAT 57.733 29.630 0.00 0.00 0.00 3.55
412 734 8.744568 AATTTTATTCAAACACCACAACCATT 57.255 26.923 0.00 0.00 0.00 3.16
413 735 9.838339 AATTTTATTCAAACACCACAACCATTA 57.162 25.926 0.00 0.00 0.00 1.90
414 736 8.649973 TTTTATTCAAACACCACAACCATTAC 57.350 30.769 0.00 0.00 0.00 1.89
415 737 5.860941 ATTCAAACACCACAACCATTACA 57.139 34.783 0.00 0.00 0.00 2.41
416 738 5.661056 TTCAAACACCACAACCATTACAA 57.339 34.783 0.00 0.00 0.00 2.41
417 739 5.661056 TCAAACACCACAACCATTACAAA 57.339 34.783 0.00 0.00 0.00 2.83
418 740 6.227298 TCAAACACCACAACCATTACAAAT 57.773 33.333 0.00 0.00 0.00 2.32
419 741 6.045318 TCAAACACCACAACCATTACAAATG 58.955 36.000 0.00 0.00 0.00 2.32
420 742 5.606348 AACACCACAACCATTACAAATGT 57.394 34.783 0.00 0.00 0.00 2.71
421 743 6.716934 AACACCACAACCATTACAAATGTA 57.283 33.333 0.00 0.00 0.00 2.29
422 744 6.079424 ACACCACAACCATTACAAATGTAC 57.921 37.500 0.00 0.00 0.00 2.90
423 745 5.010213 ACACCACAACCATTACAAATGTACC 59.990 40.000 0.00 0.00 0.00 3.34
424 746 4.216687 ACCACAACCATTACAAATGTACCG 59.783 41.667 0.00 0.00 0.00 4.02
425 747 4.162812 CACAACCATTACAAATGTACCGC 58.837 43.478 0.00 0.00 0.00 5.68
426 748 3.120130 ACAACCATTACAAATGTACCGCG 60.120 43.478 0.00 0.00 0.00 6.46
427 749 2.011222 ACCATTACAAATGTACCGCGG 58.989 47.619 26.86 26.86 0.00 6.46
428 750 2.281517 CCATTACAAATGTACCGCGGA 58.718 47.619 35.90 10.61 0.00 5.54
429 751 2.286833 CCATTACAAATGTACCGCGGAG 59.713 50.000 35.90 13.98 0.00 4.63
430 752 2.747396 TTACAAATGTACCGCGGAGT 57.253 45.000 35.90 13.91 0.00 3.85
431 753 2.747396 TACAAATGTACCGCGGAGTT 57.253 45.000 35.90 12.87 0.00 3.01
444 766 2.733552 CGCGGAGTTCCATATTGATGAG 59.266 50.000 0.00 0.00 34.73 2.90
518 847 3.497332 TGTAGCCACTAGTTCTGTGAGT 58.503 45.455 0.00 0.00 37.60 3.41
523 852 4.959210 AGCCACTAGTTCTGTGAGTGATAT 59.041 41.667 0.00 0.00 42.65 1.63
913 1313 2.832931 CTGAACCCAGTTCTCAGCG 58.167 57.895 8.77 0.00 42.39 5.18
922 1322 0.877071 AGTTCTCAGCGCATTTGTGG 59.123 50.000 11.47 0.00 0.00 4.17
936 1336 5.389725 CGCATTTGTGGAGGCTTTAATTTTG 60.390 40.000 0.00 0.00 0.00 2.44
960 1360 6.318648 TGAACAGCATGGTAGGCTAATTTTAG 59.681 38.462 0.00 0.00 33.00 1.85
979 1379 1.768870 AGGTTCTGTGTGGTTGTAGCT 59.231 47.619 0.00 0.00 0.00 3.32
1007 1407 4.949238 TGCATGTAAACTTGTCATGGCTAT 59.051 37.500 0.00 0.00 39.20 2.97
1018 1419 7.661968 ACTTGTCATGGCTATAGTATGTAGTG 58.338 38.462 14.65 9.25 0.00 2.74
1035 1436 2.350522 AGTGTAAAGCAGATGGAAGCG 58.649 47.619 0.00 0.00 35.48 4.68
1037 1438 2.349886 GTGTAAAGCAGATGGAAGCGAG 59.650 50.000 0.00 0.00 35.48 5.03
1043 1444 0.108472 CAGATGGAAGCGAGTCAGCA 60.108 55.000 9.14 0.00 40.15 4.41
1100 1501 3.204526 AGCAAACAGATGAGATGCTAGC 58.795 45.455 8.10 8.10 44.92 3.42
1144 1545 1.403647 CGGAAATGTGCCTAGACGACA 60.404 52.381 0.00 0.00 0.00 4.35
1183 1584 6.158598 GGCATTGTTCAAGAAAAGCAAGATA 58.841 36.000 0.00 0.00 0.00 1.98
1210 1611 2.686915 GAGGCAAGATTGGAGGTTCATG 59.313 50.000 0.00 0.00 0.00 3.07
1212 1613 3.091545 GGCAAGATTGGAGGTTCATGAA 58.908 45.455 3.38 3.38 0.00 2.57
1281 1682 5.640189 ACCAAGAAAAGCAATCTGATCAG 57.360 39.130 17.07 17.07 0.00 2.90
1445 1849 2.814410 CACAAGAGTGCGTCGTCAT 58.186 52.632 0.00 0.00 39.21 3.06
1461 1865 0.108186 TCATGCACGAAGTAGGCCTG 60.108 55.000 17.99 0.00 41.61 4.85
1564 1968 0.610232 GAAGTGGATGCAGGCTGGTT 60.610 55.000 17.64 0.00 0.00 3.67
1573 1977 0.741221 GCAGGCTGGTTAGTTCCTCG 60.741 60.000 17.64 0.00 0.00 4.63
1596 2004 5.741982 CGACCTTACCTTTGTTTGTTTCTTG 59.258 40.000 0.00 0.00 0.00 3.02
1598 2006 5.186992 ACCTTACCTTTGTTTGTTTCTTGCT 59.813 36.000 0.00 0.00 0.00 3.91
1607 2015 6.036577 TGTTTGTTTCTTGCTTCCTTTCTT 57.963 33.333 0.00 0.00 0.00 2.52
1745 2162 2.227089 GATCGTTCGACTGGGCAGGT 62.227 60.000 0.00 0.00 0.00 4.00
1911 2328 6.015350 GCAGCATATGTAGGAACTAGGAACTA 60.015 42.308 4.29 0.00 44.14 2.24
1942 2359 8.721478 TGTCAGATTTGTTTCTCTGTATAAAGC 58.279 33.333 0.00 0.00 39.87 3.51
1992 2409 2.290367 TGTCCAGCGTCTGTTTTGATTG 59.710 45.455 6.19 0.00 0.00 2.67
2005 2422 6.540914 TCTGTTTTGATTGACGGTTCTTAACT 59.459 34.615 0.00 0.00 0.00 2.24
2019 2438 7.150640 CGGTTCTTAACTAGTGTACTTCCTTT 58.849 38.462 0.00 0.00 0.00 3.11
2065 2494 3.988379 TTCTGTCAAGTCAAATGGTGC 57.012 42.857 0.00 0.00 0.00 5.01
2117 2566 5.125100 TCAACAACTACGGTACTACCAAG 57.875 43.478 6.06 4.83 38.47 3.61
2118 2567 4.584325 TCAACAACTACGGTACTACCAAGT 59.416 41.667 6.06 5.42 38.47 3.16
2147 2596 7.807977 ATCATGAAATAAACAACCTATCGCT 57.192 32.000 0.00 0.00 0.00 4.93
2156 2605 4.323553 ACAACCTATCGCTGGATTAGAC 57.676 45.455 0.00 0.00 34.00 2.59
2178 2627 2.622436 CTCTAGCAGGGCACTAAACAC 58.378 52.381 0.00 0.00 0.00 3.32
2179 2628 1.974957 TCTAGCAGGGCACTAAACACA 59.025 47.619 0.00 0.00 0.00 3.72
2180 2629 2.076863 CTAGCAGGGCACTAAACACAC 58.923 52.381 0.00 0.00 0.00 3.82
2182 2631 0.537371 GCAGGGCACTAAACACACCT 60.537 55.000 0.00 0.00 0.00 4.00
2183 2632 1.271163 GCAGGGCACTAAACACACCTA 60.271 52.381 0.00 0.00 0.00 3.08
2184 2633 2.618045 GCAGGGCACTAAACACACCTAT 60.618 50.000 0.00 0.00 0.00 2.57
2185 2634 3.009723 CAGGGCACTAAACACACCTATG 58.990 50.000 0.00 0.00 0.00 2.23
2194 2650 0.249398 ACACACCTATGGTTCTCGGC 59.751 55.000 0.00 0.00 31.02 5.54
2224 3923 3.741325 GCCCCTGGCCTCTTTCTA 58.259 61.111 3.32 0.00 44.06 2.10
2226 3925 0.179006 GCCCCTGGCCTCTTTCTATG 60.179 60.000 3.32 0.00 44.06 2.23
2233 3932 3.686016 TGGCCTCTTTCTATGTTTGGTC 58.314 45.455 3.32 0.00 0.00 4.02
2238 3937 4.633565 CCTCTTTCTATGTTTGGTCAGAGC 59.366 45.833 0.00 0.00 0.00 4.09
2254 3953 2.829741 GAGCATCTTTAGCCGATCCT 57.170 50.000 0.00 0.00 0.00 3.24
2320 4019 2.317973 GACCTAGCCGAACCCTTATCT 58.682 52.381 0.00 0.00 0.00 1.98
2321 4020 3.494332 GACCTAGCCGAACCCTTATCTA 58.506 50.000 0.00 0.00 0.00 1.98
2328 4027 6.099159 AGCCGAACCCTTATCTAGTTTATC 57.901 41.667 0.00 0.00 0.00 1.75
2329 4028 5.839606 AGCCGAACCCTTATCTAGTTTATCT 59.160 40.000 0.00 0.00 0.00 1.98
2331 4030 6.689554 CCGAACCCTTATCTAGTTTATCTCC 58.310 44.000 0.00 0.00 0.00 3.71
2352 4053 3.116073 AAAAATTGTAAGCGGCCGC 57.884 47.368 42.34 42.34 42.33 6.53
2380 4081 1.839424 AAAAATTGGCCCTCTCCTCG 58.161 50.000 0.00 0.00 0.00 4.63
2381 4082 0.698818 AAAATTGGCCCTCTCCTCGT 59.301 50.000 0.00 0.00 0.00 4.18
2382 4083 0.253327 AAATTGGCCCTCTCCTCGTC 59.747 55.000 0.00 0.00 0.00 4.20
2383 4084 0.618968 AATTGGCCCTCTCCTCGTCT 60.619 55.000 0.00 0.00 0.00 4.18
2384 4085 1.045911 ATTGGCCCTCTCCTCGTCTC 61.046 60.000 0.00 0.00 0.00 3.36
2385 4086 2.835895 GGCCCTCTCCTCGTCTCC 60.836 72.222 0.00 0.00 0.00 3.71
2386 4087 2.043852 GCCCTCTCCTCGTCTCCA 60.044 66.667 0.00 0.00 0.00 3.86
2387 4088 1.682684 GCCCTCTCCTCGTCTCCAA 60.683 63.158 0.00 0.00 0.00 3.53
2388 4089 1.950973 GCCCTCTCCTCGTCTCCAAC 61.951 65.000 0.00 0.00 0.00 3.77
2389 4090 0.612174 CCCTCTCCTCGTCTCCAACA 60.612 60.000 0.00 0.00 0.00 3.33
2390 4091 1.479709 CCTCTCCTCGTCTCCAACAT 58.520 55.000 0.00 0.00 0.00 2.71
2391 4092 1.407258 CCTCTCCTCGTCTCCAACATC 59.593 57.143 0.00 0.00 0.00 3.06
2392 4093 1.407258 CTCTCCTCGTCTCCAACATCC 59.593 57.143 0.00 0.00 0.00 3.51
2393 4094 1.186200 CTCCTCGTCTCCAACATCCA 58.814 55.000 0.00 0.00 0.00 3.41
2394 4095 1.550524 CTCCTCGTCTCCAACATCCAA 59.449 52.381 0.00 0.00 0.00 3.53
2395 4096 1.974957 TCCTCGTCTCCAACATCCAAA 59.025 47.619 0.00 0.00 0.00 3.28
2408 4109 1.063417 CATCCAAATTGGCCCTCTCCT 60.063 52.381 7.24 0.00 37.47 3.69
2411 4112 0.035056 CAAATTGGCCCTCTCCTCGT 60.035 55.000 0.00 0.00 0.00 4.18
2414 4115 0.618968 ATTGGCCCTCTCCTCGTCTT 60.619 55.000 0.00 0.00 0.00 3.01
2418 4119 0.108567 GCCCTCTCCTCGTCTTCAAC 60.109 60.000 0.00 0.00 0.00 3.18
2419 4120 1.257743 CCCTCTCCTCGTCTTCAACA 58.742 55.000 0.00 0.00 0.00 3.33
2432 4133 2.232941 TCTTCAACATCCACCCGTAGTC 59.767 50.000 0.00 0.00 0.00 2.59
2433 4134 1.634960 TCAACATCCACCCGTAGTCA 58.365 50.000 0.00 0.00 0.00 3.41
2436 4137 2.160721 ACATCCACCCGTAGTCATCT 57.839 50.000 0.00 0.00 0.00 2.90
2437 4138 2.032620 ACATCCACCCGTAGTCATCTC 58.967 52.381 0.00 0.00 0.00 2.75
2438 4139 2.311463 CATCCACCCGTAGTCATCTCT 58.689 52.381 0.00 0.00 0.00 3.10
2441 4142 2.240414 TCCACCCGTAGTCATCTCTACA 59.760 50.000 0.00 0.00 39.92 2.74
2443 4144 2.358267 CACCCGTAGTCATCTCTACACC 59.642 54.545 0.00 0.00 39.92 4.16
2444 4145 1.955080 CCCGTAGTCATCTCTACACCC 59.045 57.143 0.00 0.00 39.92 4.61
2455 4157 3.064987 CTACACCCGCTGACCTCCG 62.065 68.421 0.00 0.00 0.00 4.63
2463 4165 3.680786 CTGACCTCCGGACGCACA 61.681 66.667 0.00 0.32 0.00 4.57
2506 4211 4.647424 TCTGTTGTTGAAATTGACCCAC 57.353 40.909 0.00 0.00 0.00 4.61
2507 4212 3.066064 TCTGTTGTTGAAATTGACCCACG 59.934 43.478 0.00 0.00 0.00 4.94
2523 4240 2.969238 CGCTGCCGCTATCCCTTG 60.969 66.667 0.00 0.00 0.00 3.61
2526 4243 1.227674 CTGCCGCTATCCCTTGGAC 60.228 63.158 0.00 0.00 32.98 4.02
2548 4316 0.958822 AAAACCCGTTGACATCAGGC 59.041 50.000 0.00 0.00 0.00 4.85
2550 4318 0.179004 AACCCGTTGACATCAGGCAA 60.179 50.000 0.00 0.00 0.00 4.52
2595 4363 4.380087 CGTGAAGAGTGCTTGTATATAGCG 59.620 45.833 5.63 0.00 41.54 4.26
2600 4368 4.976731 AGAGTGCTTGTATATAGCGTTTCG 59.023 41.667 5.63 0.00 41.54 3.46
2605 4373 6.786103 GTGCTTGTATATAGCGTTTCGATTTC 59.214 38.462 0.00 0.00 41.54 2.17
2609 4377 9.569212 CTTGTATATAGCGTTTCGATTTCTTTC 57.431 33.333 0.00 0.00 0.00 2.62
2610 4378 8.867112 TGTATATAGCGTTTCGATTTCTTTCT 57.133 30.769 0.00 0.00 0.00 2.52
2615 4383 6.496524 AGCGTTTCGATTTCTTTCTTTTTG 57.503 33.333 0.00 0.00 0.00 2.44
2616 4384 6.033966 AGCGTTTCGATTTCTTTCTTTTTGT 58.966 32.000 0.00 0.00 0.00 2.83
2617 4385 6.196538 AGCGTTTCGATTTCTTTCTTTTTGTC 59.803 34.615 0.00 0.00 0.00 3.18
2618 4386 6.020995 GCGTTTCGATTTCTTTCTTTTTGTCA 60.021 34.615 0.00 0.00 0.00 3.58
2619 4387 7.305993 GCGTTTCGATTTCTTTCTTTTTGTCAT 60.306 33.333 0.00 0.00 0.00 3.06
2620 4388 8.201401 CGTTTCGATTTCTTTCTTTTTGTCATC 58.799 33.333 0.00 0.00 0.00 2.92
2621 4389 8.480066 GTTTCGATTTCTTTCTTTTTGTCATCC 58.520 33.333 0.00 0.00 0.00 3.51
2622 4390 7.270757 TCGATTTCTTTCTTTTTGTCATCCA 57.729 32.000 0.00 0.00 0.00 3.41
2623 4391 7.362662 TCGATTTCTTTCTTTTTGTCATCCAG 58.637 34.615 0.00 0.00 0.00 3.86
2624 4392 7.228507 TCGATTTCTTTCTTTTTGTCATCCAGA 59.771 33.333 0.00 0.00 0.00 3.86
2625 4393 7.862372 CGATTTCTTTCTTTTTGTCATCCAGAA 59.138 33.333 0.00 0.00 0.00 3.02
2626 4394 9.702494 GATTTCTTTCTTTTTGTCATCCAGAAT 57.298 29.630 0.00 0.00 0.00 2.40
2630 4398 9.519191 TCTTTCTTTTTGTCATCCAGAATATCA 57.481 29.630 0.00 0.00 0.00 2.15
2633 4401 8.229253 TCTTTTTGTCATCCAGAATATCATGG 57.771 34.615 0.00 0.58 37.97 3.66
2658 4426 8.257830 GAAGTCATTCCTTAACGAATCTTTCT 57.742 34.615 0.00 0.00 29.85 2.52
2659 4427 9.367444 GAAGTCATTCCTTAACGAATCTTTCTA 57.633 33.333 0.00 0.00 29.85 2.10
2660 4428 9.892130 AAGTCATTCCTTAACGAATCTTTCTAT 57.108 29.630 0.00 0.00 29.85 1.98
2746 4514 9.932207 TTGCAGTTACTAAATTACTAGTTAGCA 57.068 29.630 0.00 0.00 35.81 3.49
2752 4520 7.464830 ACTAAATTACTAGTTAGCATGCACG 57.535 36.000 21.98 3.52 35.81 5.34
2753 4521 7.039882 ACTAAATTACTAGTTAGCATGCACGT 58.960 34.615 21.98 9.30 35.81 4.49
2754 4522 5.718649 AATTACTAGTTAGCATGCACGTG 57.281 39.130 21.98 12.28 0.00 4.49
2755 4523 1.359848 ACTAGTTAGCATGCACGTGC 58.640 50.000 33.11 33.11 45.38 5.34
2770 4538 2.824489 TGCAACGCACGTCCCAAA 60.824 55.556 0.00 0.00 31.71 3.28
2771 4539 2.353030 GCAACGCACGTCCCAAAC 60.353 61.111 0.00 0.00 0.00 2.93
2772 4540 3.102985 CAACGCACGTCCCAAACA 58.897 55.556 0.00 0.00 0.00 2.83
2773 4541 1.429825 CAACGCACGTCCCAAACAA 59.570 52.632 0.00 0.00 0.00 2.83
2774 4542 0.030101 CAACGCACGTCCCAAACAAT 59.970 50.000 0.00 0.00 0.00 2.71
2775 4543 0.741915 AACGCACGTCCCAAACAATT 59.258 45.000 0.00 0.00 0.00 2.32
2776 4544 1.595466 ACGCACGTCCCAAACAATTA 58.405 45.000 0.00 0.00 0.00 1.40
2777 4545 2.156098 ACGCACGTCCCAAACAATTAT 58.844 42.857 0.00 0.00 0.00 1.28
2778 4546 3.336468 ACGCACGTCCCAAACAATTATA 58.664 40.909 0.00 0.00 0.00 0.98
2779 4547 3.752222 ACGCACGTCCCAAACAATTATAA 59.248 39.130 0.00 0.00 0.00 0.98
2780 4548 4.142773 ACGCACGTCCCAAACAATTATAAG 60.143 41.667 0.00 0.00 0.00 1.73
2781 4549 4.142773 CGCACGTCCCAAACAATTATAAGT 60.143 41.667 0.00 0.00 0.00 2.24
2782 4550 5.092781 GCACGTCCCAAACAATTATAAGTG 58.907 41.667 11.21 11.21 0.00 3.16
2783 4551 5.106475 GCACGTCCCAAACAATTATAAGTGA 60.106 40.000 19.08 0.00 0.00 3.41
2784 4552 6.542852 CACGTCCCAAACAATTATAAGTGAG 58.457 40.000 19.08 8.44 0.00 3.51
2785 4553 6.148811 CACGTCCCAAACAATTATAAGTGAGT 59.851 38.462 19.08 4.25 0.00 3.41
2786 4554 6.713450 ACGTCCCAAACAATTATAAGTGAGTT 59.287 34.615 19.08 9.70 0.00 3.01
2787 4555 7.094933 ACGTCCCAAACAATTATAAGTGAGTTC 60.095 37.037 19.08 3.07 0.00 3.01
2788 4556 7.094975 CGTCCCAAACAATTATAAGTGAGTTCA 60.095 37.037 19.08 0.00 0.00 3.18
2789 4557 8.021396 GTCCCAAACAATTATAAGTGAGTTCAC 58.979 37.037 19.08 4.09 46.77 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 5.638596 AGGTATTTTGGTTTAAGAAGCCG 57.361 39.130 0.00 0.00 32.33 5.52
27 28 6.292150 CCTTTGGCAAGGTATTTTGGTTTAA 58.708 36.000 8.62 0.00 44.46 1.52
58 59 9.143155 AGGGTGTTTGTTTAAGAAGTGATAATT 57.857 29.630 0.00 0.00 0.00 1.40
94 97 5.012239 ACCATCTACAGCATTTGACAATGT 58.988 37.500 0.00 0.00 41.84 2.71
95 98 5.124297 TCACCATCTACAGCATTTGACAATG 59.876 40.000 0.00 0.00 42.60 2.82
164 167 0.108585 TGAGTGGCCAACAACTCTCC 59.891 55.000 18.84 0.00 32.19 3.71
216 220 1.676006 GCCAAAACAGATACCCCGATG 59.324 52.381 0.00 0.00 0.00 3.84
219 223 1.834188 AAGCCAAAACAGATACCCCG 58.166 50.000 0.00 0.00 0.00 5.73
227 233 4.033932 GCCAACTAACAAAAGCCAAAACAG 59.966 41.667 0.00 0.00 0.00 3.16
274 280 6.058183 GCTATCACATATCCCAAACTCAACT 58.942 40.000 0.00 0.00 0.00 3.16
341 654 3.191162 GCAATGGCAGACACAAGACATAA 59.809 43.478 0.00 0.00 40.72 1.90
357 670 3.006217 TCTCTCAGACGATATGGCAATGG 59.994 47.826 0.00 0.00 0.00 3.16
363 676 5.007034 ACAGGTATCTCTCAGACGATATGG 58.993 45.833 0.00 0.00 0.00 2.74
389 711 8.258007 TGTAATGGTTGTGGTGTTTGAATAAAA 58.742 29.630 0.00 0.00 0.00 1.52
411 733 2.747396 ACTCCGCGGTACATTTGTAA 57.253 45.000 27.15 0.00 31.52 2.41
412 734 2.609350 GAACTCCGCGGTACATTTGTA 58.391 47.619 27.15 0.17 0.00 2.41
413 735 1.435577 GAACTCCGCGGTACATTTGT 58.564 50.000 27.15 10.57 0.00 2.83
414 736 0.725117 GGAACTCCGCGGTACATTTG 59.275 55.000 27.15 9.94 0.00 2.32
415 737 0.322322 TGGAACTCCGCGGTACATTT 59.678 50.000 27.15 11.87 39.43 2.32
416 738 0.539986 ATGGAACTCCGCGGTACATT 59.460 50.000 27.15 14.95 39.43 2.71
417 739 1.405872 TATGGAACTCCGCGGTACAT 58.594 50.000 27.15 20.53 39.43 2.29
418 740 1.405872 ATATGGAACTCCGCGGTACA 58.594 50.000 27.15 14.07 39.43 2.90
419 741 2.132762 CAATATGGAACTCCGCGGTAC 58.867 52.381 27.15 7.39 39.43 3.34
420 742 2.033372 TCAATATGGAACTCCGCGGTA 58.967 47.619 27.15 11.20 39.43 4.02
421 743 0.828022 TCAATATGGAACTCCGCGGT 59.172 50.000 27.15 5.51 39.43 5.68
422 744 1.800586 CATCAATATGGAACTCCGCGG 59.199 52.381 22.12 22.12 39.43 6.46
423 745 2.733552 CTCATCAATATGGAACTCCGCG 59.266 50.000 0.00 0.00 39.43 6.46
424 746 2.481952 GCTCATCAATATGGAACTCCGC 59.518 50.000 0.00 0.00 39.43 5.54
425 747 4.000331 AGCTCATCAATATGGAACTCCG 58.000 45.455 0.00 0.00 39.43 4.63
426 748 5.371526 TCAAGCTCATCAATATGGAACTCC 58.628 41.667 0.00 0.00 33.61 3.85
427 749 6.932356 TTCAAGCTCATCAATATGGAACTC 57.068 37.500 0.00 0.00 33.61 3.01
428 750 6.832384 ACATTCAAGCTCATCAATATGGAACT 59.168 34.615 0.00 0.00 33.61 3.01
429 751 6.916387 CACATTCAAGCTCATCAATATGGAAC 59.084 38.462 0.00 0.00 33.61 3.62
430 752 6.604396 ACACATTCAAGCTCATCAATATGGAA 59.396 34.615 0.00 0.00 33.61 3.53
431 753 6.038936 CACACATTCAAGCTCATCAATATGGA 59.961 38.462 0.00 0.00 33.61 3.41
444 766 2.859806 GCCAACTCACACACATTCAAGC 60.860 50.000 0.00 0.00 0.00 4.01
536 865 7.801716 TCATTGTGCCTTACCTATTACATTC 57.198 36.000 0.00 0.00 0.00 2.67
913 1313 5.700373 TCAAAATTAAAGCCTCCACAAATGC 59.300 36.000 0.00 0.00 0.00 3.56
922 1322 5.349543 CCATGCTGTTCAAAATTAAAGCCTC 59.650 40.000 0.00 0.00 0.00 4.70
936 1336 5.582689 AAAATTAGCCTACCATGCTGTTC 57.417 39.130 0.00 0.00 39.91 3.18
960 1360 2.256117 AGCTACAACCACACAGAACC 57.744 50.000 0.00 0.00 0.00 3.62
979 1379 2.954989 TGACAAGTTTACATGCAGGCAA 59.045 40.909 0.00 0.00 0.00 4.52
1007 1407 7.891498 TCCATCTGCTTTACACTACATACTA 57.109 36.000 0.00 0.00 0.00 1.82
1016 1417 2.346803 TCGCTTCCATCTGCTTTACAC 58.653 47.619 0.00 0.00 0.00 2.90
1018 1419 2.605366 GACTCGCTTCCATCTGCTTTAC 59.395 50.000 0.00 0.00 0.00 2.01
1035 1436 3.149196 TCCAAATCCTTGTTGCTGACTC 58.851 45.455 0.00 0.00 0.00 3.36
1037 1438 2.887152 ACTCCAAATCCTTGTTGCTGAC 59.113 45.455 0.00 0.00 0.00 3.51
1043 1444 5.200483 TCTGTTCAACTCCAAATCCTTGTT 58.800 37.500 0.00 0.00 0.00 2.83
1100 1501 5.977129 GTGAACTTTTGGTTAACCTGTGATG 59.023 40.000 24.78 12.36 38.41 3.07
1183 1584 2.091994 CCTCCAATCTTGCCTCTGGATT 60.092 50.000 0.00 0.00 37.34 3.01
1210 1611 4.122046 AGGCACATTTCAGCAAACTTTTC 58.878 39.130 0.00 0.00 0.00 2.29
1212 1613 3.825143 AGGCACATTTCAGCAAACTTT 57.175 38.095 0.00 0.00 0.00 2.66
1281 1682 2.110006 GCCTCCGATCTTGCCTCC 59.890 66.667 0.00 0.00 0.00 4.30
1410 1814 0.462047 GTGTTGCTACCATCCTCCGG 60.462 60.000 0.00 0.00 0.00 5.14
1445 1849 2.662596 CCAGGCCTACTTCGTGCA 59.337 61.111 3.98 0.00 0.00 4.57
1461 1865 0.912486 TTAAGAAGCCTGCCTCTCCC 59.088 55.000 0.00 0.00 0.00 4.30
1499 1903 2.419324 CTGCATTCAGGCTTCTTCTCAC 59.581 50.000 0.00 0.00 36.68 3.51
1564 1968 4.154942 ACAAAGGTAAGGTCGAGGAACTA 58.845 43.478 0.00 0.00 41.55 2.24
1573 1977 5.518847 GCAAGAAACAAACAAAGGTAAGGTC 59.481 40.000 0.00 0.00 0.00 3.85
1596 2004 1.068954 CGCTGAACCAAGAAAGGAAGC 60.069 52.381 0.00 0.00 33.17 3.86
1598 2006 2.341846 ACGCTGAACCAAGAAAGGAA 57.658 45.000 0.00 0.00 0.00 3.36
1849 2266 0.517316 CCACTAACTCGCCAAGCAAC 59.483 55.000 0.00 0.00 0.00 4.17
1911 2328 9.950496 ATACAGAGAAACAAATCTGACAGTATT 57.050 29.630 9.06 0.00 44.68 1.89
1942 2359 0.739462 TGGTGGACAAGATAAGCGCG 60.739 55.000 0.00 0.00 0.00 6.86
1992 2409 6.072230 AGGAAGTACACTAGTTAAGAACCGTC 60.072 42.308 0.00 0.00 0.00 4.79
1997 2414 8.921205 AGACAAAGGAAGTACACTAGTTAAGAA 58.079 33.333 0.00 0.00 0.00 2.52
2043 2472 4.341806 TGCACCATTTGACTTGACAGAAAT 59.658 37.500 0.00 0.00 0.00 2.17
2049 2478 3.981211 ACATTGCACCATTTGACTTGAC 58.019 40.909 0.00 0.00 0.00 3.18
2051 2480 4.809958 TCAAACATTGCACCATTTGACTTG 59.190 37.500 12.23 4.72 36.42 3.16
2065 2494 8.961294 TTTTCAACAAAATTGGTCAAACATTG 57.039 26.923 0.00 0.00 0.00 2.82
2105 2554 7.268199 TCATGATACTAACTTGGTAGTACCG 57.732 40.000 14.67 3.86 42.58 4.02
2140 2589 3.426615 AGAGGGTCTAATCCAGCGATAG 58.573 50.000 0.00 0.00 0.00 2.08
2144 2593 1.271102 GCTAGAGGGTCTAATCCAGCG 59.729 57.143 0.00 0.00 0.00 5.18
2147 2596 2.964209 CCTGCTAGAGGGTCTAATCCA 58.036 52.381 0.00 0.00 38.36 3.41
2178 2627 1.227263 CGGCCGAGAACCATAGGTG 60.227 63.158 24.07 0.00 35.34 4.00
2179 2628 1.380785 TCGGCCGAGAACCATAGGT 60.381 57.895 27.28 0.00 37.65 3.08
2180 2629 1.364171 CTCGGCCGAGAACCATAGG 59.636 63.158 45.28 19.75 44.53 2.57
2213 2682 3.686016 TGACCAAACATAGAAAGAGGCC 58.314 45.455 0.00 0.00 0.00 5.19
2214 2683 4.579869 TCTGACCAAACATAGAAAGAGGC 58.420 43.478 0.00 0.00 0.00 4.70
2224 3923 4.397417 GCTAAAGATGCTCTGACCAAACAT 59.603 41.667 0.00 0.00 0.00 2.71
2226 3925 3.127721 GGCTAAAGATGCTCTGACCAAAC 59.872 47.826 0.00 0.00 0.00 2.93
2233 3932 2.036992 AGGATCGGCTAAAGATGCTCTG 59.963 50.000 0.00 0.00 41.89 3.35
2300 3999 2.317973 AGATAAGGGTTCGGCTAGGTC 58.682 52.381 0.00 0.00 0.00 3.85
2302 4001 3.498334 ACTAGATAAGGGTTCGGCTAGG 58.502 50.000 0.00 0.00 31.90 3.02
2337 4038 3.505184 CCGCGGCCGCTTACAATT 61.505 61.111 43.60 0.00 39.32 2.32
2363 4064 0.253327 GACGAGGAGAGGGCCAATTT 59.747 55.000 6.18 0.00 0.00 1.82
2364 4065 0.618968 AGACGAGGAGAGGGCCAATT 60.619 55.000 6.18 0.00 0.00 2.32
2365 4066 1.002274 AGACGAGGAGAGGGCCAAT 59.998 57.895 6.18 0.00 0.00 3.16
2366 4067 1.682684 GAGACGAGGAGAGGGCCAA 60.683 63.158 6.18 0.00 0.00 4.52
2367 4068 2.043852 GAGACGAGGAGAGGGCCA 60.044 66.667 6.18 0.00 0.00 5.36
2368 4069 2.835895 GGAGACGAGGAGAGGGCC 60.836 72.222 0.00 0.00 0.00 5.80
2369 4070 1.682684 TTGGAGACGAGGAGAGGGC 60.683 63.158 0.00 0.00 0.00 5.19
2370 4071 0.612174 TGTTGGAGACGAGGAGAGGG 60.612 60.000 0.00 0.00 0.00 4.30
2371 4072 1.407258 GATGTTGGAGACGAGGAGAGG 59.593 57.143 0.00 0.00 0.00 3.69
2372 4073 1.407258 GGATGTTGGAGACGAGGAGAG 59.593 57.143 0.00 0.00 0.00 3.20
2373 4074 1.272480 TGGATGTTGGAGACGAGGAGA 60.272 52.381 0.00 0.00 0.00 3.71
2374 4075 1.186200 TGGATGTTGGAGACGAGGAG 58.814 55.000 0.00 0.00 0.00 3.69
2375 4076 1.639722 TTGGATGTTGGAGACGAGGA 58.360 50.000 0.00 0.00 0.00 3.71
2376 4077 2.472695 TTTGGATGTTGGAGACGAGG 57.527 50.000 0.00 0.00 0.00 4.63
2377 4078 3.127548 CCAATTTGGATGTTGGAGACGAG 59.872 47.826 10.03 0.00 46.15 4.18
2378 4079 3.081061 CCAATTTGGATGTTGGAGACGA 58.919 45.455 10.03 0.00 46.15 4.20
2379 4080 2.415893 GCCAATTTGGATGTTGGAGACG 60.416 50.000 19.76 0.00 46.15 4.18
2380 4081 2.094026 GGCCAATTTGGATGTTGGAGAC 60.094 50.000 19.76 0.00 46.15 3.36
2381 4082 2.178580 GGCCAATTTGGATGTTGGAGA 58.821 47.619 19.76 0.00 46.15 3.71
2382 4083 1.207811 GGGCCAATTTGGATGTTGGAG 59.792 52.381 19.76 0.00 46.15 3.86
2383 4084 1.203288 AGGGCCAATTTGGATGTTGGA 60.203 47.619 19.76 0.00 46.15 3.53
2384 4085 1.207811 GAGGGCCAATTTGGATGTTGG 59.792 52.381 19.76 0.00 46.03 3.77
2385 4086 2.167075 GAGAGGGCCAATTTGGATGTTG 59.833 50.000 19.76 0.00 40.96 3.33
2386 4087 2.460669 GAGAGGGCCAATTTGGATGTT 58.539 47.619 19.76 1.00 40.96 2.71
2387 4088 1.342374 GGAGAGGGCCAATTTGGATGT 60.342 52.381 19.76 2.56 40.96 3.06
2388 4089 1.063417 AGGAGAGGGCCAATTTGGATG 60.063 52.381 19.76 0.00 40.96 3.51
2389 4090 1.216427 GAGGAGAGGGCCAATTTGGAT 59.784 52.381 19.76 3.84 40.96 3.41
2390 4091 0.625849 GAGGAGAGGGCCAATTTGGA 59.374 55.000 19.76 0.00 40.96 3.53
2391 4092 0.749454 CGAGGAGAGGGCCAATTTGG 60.749 60.000 11.27 11.27 41.55 3.28
2392 4093 0.035056 ACGAGGAGAGGGCCAATTTG 60.035 55.000 6.18 0.00 0.00 2.32
2393 4094 0.253327 GACGAGGAGAGGGCCAATTT 59.747 55.000 6.18 0.00 0.00 1.82
2394 4095 0.618968 AGACGAGGAGAGGGCCAATT 60.619 55.000 6.18 0.00 0.00 2.32
2395 4096 0.618968 AAGACGAGGAGAGGGCCAAT 60.619 55.000 6.18 0.00 0.00 3.16
2408 4109 0.037697 CGGGTGGATGTTGAAGACGA 60.038 55.000 0.00 0.00 0.00 4.20
2411 4112 2.232941 GACTACGGGTGGATGTTGAAGA 59.767 50.000 0.00 0.00 0.00 2.87
2414 4115 1.634960 TGACTACGGGTGGATGTTGA 58.365 50.000 0.00 0.00 0.00 3.18
2418 4119 2.311463 AGAGATGACTACGGGTGGATG 58.689 52.381 0.00 0.00 0.00 3.51
2419 4120 2.757894 AGAGATGACTACGGGTGGAT 57.242 50.000 0.00 0.00 0.00 3.41
2432 4133 0.103208 GGTCAGCGGGTGTAGAGATG 59.897 60.000 7.12 0.00 0.00 2.90
2433 4134 0.033011 AGGTCAGCGGGTGTAGAGAT 60.033 55.000 7.12 0.00 0.00 2.75
2436 4137 1.681327 GGAGGTCAGCGGGTGTAGA 60.681 63.158 7.12 0.00 0.00 2.59
2437 4138 2.893398 GGAGGTCAGCGGGTGTAG 59.107 66.667 7.12 0.00 0.00 2.74
2438 4139 3.066190 CGGAGGTCAGCGGGTGTA 61.066 66.667 7.12 0.00 0.00 2.90
2455 4157 2.175811 GCGAATTGGTGTGCGTCC 59.824 61.111 0.00 0.00 0.00 4.79
2480 4182 3.730715 GTCAATTTCAACAACAGAAGCGG 59.269 43.478 0.00 0.00 0.00 5.52
2484 4186 4.439426 CGTGGGTCAATTTCAACAACAGAA 60.439 41.667 0.00 0.00 0.00 3.02
2485 4187 3.066064 CGTGGGTCAATTTCAACAACAGA 59.934 43.478 0.00 0.00 0.00 3.41
2487 4189 2.480416 GCGTGGGTCAATTTCAACAACA 60.480 45.455 0.00 0.00 0.00 3.33
2489 4191 2.028130 AGCGTGGGTCAATTTCAACAA 58.972 42.857 0.00 0.00 0.00 2.83
2490 4192 1.336440 CAGCGTGGGTCAATTTCAACA 59.664 47.619 0.00 0.00 0.00 3.33
2507 4212 2.592861 CCAAGGGATAGCGGCAGC 60.593 66.667 0.00 0.00 45.58 5.25
2523 4240 1.015868 TGTCAACGGGTTTTTCGTCC 58.984 50.000 0.00 0.00 40.18 4.79
2526 4243 2.350388 CCTGATGTCAACGGGTTTTTCG 60.350 50.000 0.00 0.00 0.00 3.46
2555 4323 1.135083 CACGCTACTCCGTCCTCAATT 60.135 52.381 0.00 0.00 39.83 2.32
2556 4324 0.456221 CACGCTACTCCGTCCTCAAT 59.544 55.000 0.00 0.00 39.83 2.57
2558 4326 0.607217 TTCACGCTACTCCGTCCTCA 60.607 55.000 0.00 0.00 39.83 3.86
2565 4333 0.528470 AGCACTCTTCACGCTACTCC 59.472 55.000 0.00 0.00 33.25 3.85
2566 4334 1.989165 CAAGCACTCTTCACGCTACTC 59.011 52.381 0.00 0.00 34.11 2.59
2595 4363 8.480066 GGATGACAAAAAGAAAGAAATCGAAAC 58.520 33.333 0.00 0.00 0.00 2.78
2600 4368 9.702494 ATTCTGGATGACAAAAAGAAAGAAATC 57.298 29.630 2.38 0.00 31.14 2.17
2609 4377 8.229253 TCCATGATATTCTGGATGACAAAAAG 57.771 34.615 0.00 0.00 36.63 2.27
2610 4378 8.592529 TTCCATGATATTCTGGATGACAAAAA 57.407 30.769 7.74 0.00 41.09 1.94
2615 4383 6.528321 TGACTTCCATGATATTCTGGATGAC 58.472 40.000 19.10 15.36 41.09 3.06
2616 4384 6.752285 TGACTTCCATGATATTCTGGATGA 57.248 37.500 19.10 4.19 41.09 2.92
2617 4385 7.997773 AATGACTTCCATGATATTCTGGATG 57.002 36.000 14.11 14.11 41.09 3.51
2632 4400 7.334671 AGAAAGATTCGTTAAGGAATGACTTCC 59.665 37.037 24.08 12.34 42.10 3.46
2633 4401 8.257830 AGAAAGATTCGTTAAGGAATGACTTC 57.742 34.615 24.08 20.35 36.79 3.01
2634 4402 9.892130 ATAGAAAGATTCGTTAAGGAATGACTT 57.108 29.630 24.08 18.63 36.79 3.01
2720 4488 9.932207 TGCTAACTAGTAATTTAGTAACTGCAA 57.068 29.630 0.00 0.00 33.62 4.08
2726 4494 9.027129 CGTGCATGCTAACTAGTAATTTAGTAA 57.973 33.333 20.33 0.00 33.62 2.24
2727 4495 8.192774 ACGTGCATGCTAACTAGTAATTTAGTA 58.807 33.333 20.33 0.00 33.62 1.82
2728 4496 7.010183 CACGTGCATGCTAACTAGTAATTTAGT 59.990 37.037 20.33 0.00 35.44 2.24
2729 4497 7.337718 CACGTGCATGCTAACTAGTAATTTAG 58.662 38.462 20.33 0.00 0.00 1.85
2730 4498 6.237996 GCACGTGCATGCTAACTAGTAATTTA 60.238 38.462 34.52 0.00 42.62 1.40
2731 4499 5.447279 GCACGTGCATGCTAACTAGTAATTT 60.447 40.000 34.52 0.00 42.62 1.82
2732 4500 4.034048 GCACGTGCATGCTAACTAGTAATT 59.966 41.667 34.52 0.00 42.62 1.40
2733 4501 3.555956 GCACGTGCATGCTAACTAGTAAT 59.444 43.478 34.52 0.00 42.62 1.89
2734 4502 2.927477 GCACGTGCATGCTAACTAGTAA 59.073 45.455 34.52 0.00 42.62 2.24
2735 4503 2.536365 GCACGTGCATGCTAACTAGTA 58.464 47.619 34.52 0.00 42.62 1.82
2736 4504 1.359848 GCACGTGCATGCTAACTAGT 58.640 50.000 34.52 6.83 42.62 2.57
2753 4521 2.824489 TTTGGGACGTGCGTTGCA 60.824 55.556 0.00 0.00 35.60 4.08
2754 4522 2.353030 GTTTGGGACGTGCGTTGC 60.353 61.111 0.00 0.00 0.00 4.17
2755 4523 0.030101 ATTGTTTGGGACGTGCGTTG 59.970 50.000 0.00 0.00 0.00 4.10
2756 4524 0.741915 AATTGTTTGGGACGTGCGTT 59.258 45.000 0.00 0.00 0.00 4.84
2757 4525 1.595466 TAATTGTTTGGGACGTGCGT 58.405 45.000 0.00 0.00 0.00 5.24
2758 4526 2.911819 ATAATTGTTTGGGACGTGCG 57.088 45.000 0.00 0.00 0.00 5.34
2759 4527 5.092781 CACTTATAATTGTTTGGGACGTGC 58.907 41.667 0.00 0.00 0.00 5.34
2760 4528 6.148811 ACTCACTTATAATTGTTTGGGACGTG 59.851 38.462 0.00 0.00 0.00 4.49
2761 4529 6.235664 ACTCACTTATAATTGTTTGGGACGT 58.764 36.000 3.08 0.00 0.00 4.34
2762 4530 6.737254 ACTCACTTATAATTGTTTGGGACG 57.263 37.500 3.08 0.00 0.00 4.79
2763 4531 8.021396 GTGAACTCACTTATAATTGTTTGGGAC 58.979 37.037 2.51 0.00 43.25 4.46
2764 4532 7.721842 TGTGAACTCACTTATAATTGTTTGGGA 59.278 33.333 10.99 0.00 46.55 4.37
2765 4533 7.881142 TGTGAACTCACTTATAATTGTTTGGG 58.119 34.615 10.99 0.00 46.55 4.12
2766 4534 9.345517 CATGTGAACTCACTTATAATTGTTTGG 57.654 33.333 10.99 0.00 46.55 3.28
2767 4535 9.345517 CCATGTGAACTCACTTATAATTGTTTG 57.654 33.333 10.99 0.00 46.55 2.93
2768 4536 9.077885 ACCATGTGAACTCACTTATAATTGTTT 57.922 29.630 10.99 0.00 46.55 2.83
2769 4537 8.635765 ACCATGTGAACTCACTTATAATTGTT 57.364 30.769 10.99 0.00 46.55 2.83
2770 4538 9.905713 ATACCATGTGAACTCACTTATAATTGT 57.094 29.630 10.99 1.52 46.55 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.