Multiple sequence alignment - TraesCS2B01G383400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G383400 chr2B 100.000 1848 0 0 1 1848 547039738 547041585 0.000000e+00 3413
1 TraesCS2B01G383400 chr2B 100.000 614 0 0 2012 2625 547041749 547042362 0.000000e+00 1134
2 TraesCS2B01G383400 chr2D 89.695 1378 72 33 366 1725 468808528 468809853 0.000000e+00 1694
3 TraesCS2B01G383400 chr2D 85.542 415 47 7 2012 2418 468810496 468810905 3.120000e-114 422
4 TraesCS2B01G383400 chr2D 86.053 380 38 9 2062 2430 468829758 468830133 6.810000e-106 394
5 TraesCS2B01G383400 chr2D 91.379 290 15 3 40 323 468807145 468807430 3.170000e-104 388
6 TraesCS2B01G383400 chr2D 97.101 69 1 1 1732 1799 468810262 468810330 5.940000e-22 115
7 TraesCS2B01G383400 chr2D 92.208 77 6 0 308 384 468808441 468808517 2.760000e-20 110
8 TraesCS2B01G383400 chr2A 92.857 910 20 15 829 1725 608774815 608775692 0.000000e+00 1279
9 TraesCS2B01G383400 chr2A 87.726 831 61 24 1 807 608768876 608769689 0.000000e+00 931
10 TraesCS2B01G383400 chr2A 95.690 116 3 2 1732 1845 608777715 608777830 4.460000e-43 185
11 TraesCS2B01G383400 chr2A 88.050 159 14 4 2016 2173 608777869 608778023 1.600000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G383400 chr2B 547039738 547042362 2624 False 2273.5 3413 100.000 1 2625 2 chr2B.!!$F1 2624
1 TraesCS2B01G383400 chr2D 468807145 468810905 3760 False 545.8 1694 91.185 40 2418 5 chr2D.!!$F2 2378
2 TraesCS2B01G383400 chr2A 608768876 608769689 813 False 931.0 931 87.726 1 807 1 chr2A.!!$F1 806
3 TraesCS2B01G383400 chr2A 608774815 608778023 3208 False 549.0 1279 92.199 829 2173 3 chr2A.!!$F2 1344

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 2015 0.984432 TTTACGGGGGCCCTCTAAGG 60.984 60.0 22.56 6.38 34.3 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2043 5171 0.040067 CAGCCCTCTTGAAACGCAAC 60.04 55.0 0.0 0.0 31.96 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 4.035909 ACACGGGTAGTTGTCAAAATCAAC 59.964 41.667 0.00 0.00 43.51 3.18
153 157 5.944007 TGTAGCGCATCTAGAATAGGTATCA 59.056 40.000 11.47 0.74 39.78 2.15
227 238 1.482182 TGTGATCATTGGTCGGAGGAG 59.518 52.381 0.00 0.00 0.00 3.69
317 328 9.956720 TTCTGATATAGGCGTTAACTAACTTAC 57.043 33.333 3.71 0.00 34.12 2.34
326 1363 6.253083 GGCGTTAACTAACTTACTAGCTGAAG 59.747 42.308 3.71 0.00 34.12 3.02
363 1400 2.894126 AGGTAGATCATTCGTAGGCCAG 59.106 50.000 5.01 0.00 0.00 4.85
921 2012 1.057851 CCATTTACGGGGGCCCTCTA 61.058 60.000 22.56 8.52 0.00 2.43
924 2015 0.984432 TTTACGGGGGCCCTCTAAGG 60.984 60.000 22.56 6.38 34.30 2.69
925 2016 2.185533 TTACGGGGGCCCTCTAAGGT 62.186 60.000 22.56 13.07 31.93 3.50
926 2017 2.884179 TACGGGGGCCCTCTAAGGTG 62.884 65.000 22.56 5.03 31.93 4.00
927 2018 2.042261 GGGGGCCCTCTAAGGTGA 59.958 66.667 24.38 0.00 31.93 4.02
928 2019 2.073101 GGGGGCCCTCTAAGGTGAG 61.073 68.421 24.38 0.00 31.93 3.51
1122 2214 3.442441 CCAGCGGCAAACCAAAGA 58.558 55.556 1.45 0.00 34.57 2.52
1123 2215 1.739049 CCAGCGGCAAACCAAAGAA 59.261 52.632 1.45 0.00 34.57 2.52
1162 2254 0.385029 CAGGAGGAGATCGACAGCTG 59.615 60.000 13.48 13.48 0.00 4.24
1207 2299 4.394078 CGTCGACTCCGTCCGCAA 62.394 66.667 14.70 0.00 37.05 4.85
1283 2382 4.458829 TCCCCGGACGAGCTGGAT 62.459 66.667 0.73 0.00 46.81 3.41
1358 2457 0.934496 AAGAGAGAGACGAGATCGCG 59.066 55.000 17.67 17.67 44.43 5.87
1484 2583 0.717784 GAAGCACCGTAACCGTAAGC 59.282 55.000 0.00 0.00 0.00 3.09
1509 2609 4.313522 CTCAACTGAACGAGCACATTAC 57.686 45.455 0.00 0.00 0.00 1.89
1686 2789 9.809096 TCATTGATCTAGAGTAGTTGATTTGTC 57.191 33.333 0.00 0.00 0.00 3.18
1725 2828 7.946381 TTAAATGGTTGTGCTATGTATTCCA 57.054 32.000 0.00 0.00 0.00 3.53
1727 2830 6.639632 AATGGTTGTGCTATGTATTCCATC 57.360 37.500 0.00 0.00 34.01 3.51
1729 2832 5.368145 TGGTTGTGCTATGTATTCCATCTC 58.632 41.667 0.00 0.00 34.86 2.75
1730 2833 5.104569 TGGTTGTGCTATGTATTCCATCTCA 60.105 40.000 0.00 0.00 34.86 3.27
1845 4973 2.684374 GTGTATGCCATCTCAACATGCA 59.316 45.455 0.00 0.00 34.63 3.96
1846 4974 3.317149 GTGTATGCCATCTCAACATGCAT 59.683 43.478 0.00 0.00 38.40 3.96
2043 5171 6.027749 GGGTTTATGTTGCTATGTTTTCTCG 58.972 40.000 0.00 0.00 0.00 4.04
2076 5204 5.499004 AGAGGGCTGTTTCTATGTTGTAA 57.501 39.130 0.00 0.00 0.00 2.41
2077 5205 5.876357 AGAGGGCTGTTTCTATGTTGTAAA 58.124 37.500 0.00 0.00 0.00 2.01
2079 5207 6.375455 AGAGGGCTGTTTCTATGTTGTAAATG 59.625 38.462 0.00 0.00 0.00 2.32
2081 5209 6.071952 AGGGCTGTTTCTATGTTGTAAATGTG 60.072 38.462 0.00 0.00 0.00 3.21
2082 5210 6.294508 GGGCTGTTTCTATGTTGTAAATGTGT 60.295 38.462 0.00 0.00 0.00 3.72
2083 5211 7.145323 GGCTGTTTCTATGTTGTAAATGTGTT 58.855 34.615 0.00 0.00 0.00 3.32
2084 5212 7.651704 GGCTGTTTCTATGTTGTAAATGTGTTT 59.348 33.333 0.00 0.00 0.00 2.83
2134 5263 3.482436 TGTTGCTTACGTTGATTTCCCT 58.518 40.909 0.00 0.00 0.00 4.20
2135 5264 4.643463 TGTTGCTTACGTTGATTTCCCTA 58.357 39.130 0.00 0.00 0.00 3.53
2152 5281 5.894298 TCCCTATTGCATCTGTTGATACT 57.106 39.130 0.00 0.00 0.00 2.12
2178 5307 9.825972 TTTCTATTTTCTCAATTAGTTCTTGCG 57.174 29.630 0.00 0.00 0.00 4.85
2205 5334 7.118723 TGAAATGAGGATTTACTGCATACCTT 58.881 34.615 0.00 0.00 31.58 3.50
2211 5340 6.426587 AGGATTTACTGCATACCTTGAATGT 58.573 36.000 0.00 0.00 0.00 2.71
2217 5346 6.160576 ACTGCATACCTTGAATGTTTTGTT 57.839 33.333 0.00 0.00 0.00 2.83
2238 5373 6.336566 TGTTGTGTGTCTAAAATGTTGCAAT 58.663 32.000 0.59 0.00 0.00 3.56
2242 5377 7.904094 TGTGTGTCTAAAATGTTGCAATTTTC 58.096 30.769 12.75 2.47 39.73 2.29
2255 5392 9.715121 ATGTTGCAATTTTCTTATGTCTTTCAT 57.285 25.926 0.59 0.00 40.25 2.57
2264 5401 8.806429 TTTCTTATGTCTTTCATATTGCCTGA 57.194 30.769 0.00 0.00 38.59 3.86
2297 5434 4.458295 CCAATGATGATGCATAGGGAGTTC 59.542 45.833 0.00 0.00 0.00 3.01
2298 5435 5.314529 CAATGATGATGCATAGGGAGTTCT 58.685 41.667 0.00 0.00 0.00 3.01
2338 5475 2.045340 GTGTATGCGGGGCCAAGT 60.045 61.111 4.39 0.00 0.00 3.16
2341 5478 1.819632 GTATGCGGGGCCAAGTCAG 60.820 63.158 4.39 0.00 0.00 3.51
2351 5488 1.666888 GGCCAAGTCAGCATTCGTTTG 60.667 52.381 0.00 0.00 0.00 2.93
2354 5491 2.549754 CCAAGTCAGCATTCGTTTGTCT 59.450 45.455 0.00 0.00 0.00 3.41
2356 5493 4.143030 CCAAGTCAGCATTCGTTTGTCTAG 60.143 45.833 0.00 0.00 0.00 2.43
2378 5515 9.140286 TCTAGAGACAAAACGTATGAATTGAAG 57.860 33.333 8.14 0.24 0.00 3.02
2381 5518 8.446273 AGAGACAAAACGTATGAATTGAAGATG 58.554 33.333 8.14 0.00 0.00 2.90
2386 5523 9.179552 CAAAACGTATGAATTGAAGATGTTTGA 57.820 29.630 0.00 0.00 31.41 2.69
2387 5524 9.743057 AAAACGTATGAATTGAAGATGTTTGAA 57.257 25.926 0.00 0.00 31.41 2.69
2388 5525 9.743057 AAACGTATGAATTGAAGATGTTTGAAA 57.257 25.926 0.00 0.00 30.19 2.69
2411 5548 5.819825 AAAAAGACAGACTTGTTGGAGAC 57.180 39.130 0.00 0.00 37.76 3.36
2418 5555 1.340248 GACTTGTTGGAGACGGACTGA 59.660 52.381 0.00 0.00 0.00 3.41
2419 5556 1.068741 ACTTGTTGGAGACGGACTGAC 59.931 52.381 0.00 0.00 0.00 3.51
2420 5557 0.031585 TTGTTGGAGACGGACTGACG 59.968 55.000 0.00 0.00 40.31 4.35
2421 5558 1.733399 GTTGGAGACGGACTGACGC 60.733 63.158 0.00 0.00 37.37 5.19
2422 5559 3.263503 TTGGAGACGGACTGACGCG 62.264 63.158 3.53 3.53 37.37 6.01
2424 5561 4.104417 GAGACGGACTGACGCGCT 62.104 66.667 5.73 0.00 37.37 5.92
2425 5562 2.745100 AGACGGACTGACGCGCTA 60.745 61.111 5.73 0.00 37.37 4.26
2426 5563 2.576317 GACGGACTGACGCGCTAC 60.576 66.667 5.73 0.00 37.37 3.58
2427 5564 3.318539 GACGGACTGACGCGCTACA 62.319 63.158 5.73 3.21 37.37 2.74
2428 5565 2.126618 CGGACTGACGCGCTACAA 60.127 61.111 5.73 0.00 0.00 2.41
2429 5566 2.152699 CGGACTGACGCGCTACAAG 61.153 63.158 5.73 0.00 0.00 3.16
2430 5567 1.805945 GGACTGACGCGCTACAAGG 60.806 63.158 5.73 0.00 0.00 3.61
2431 5568 1.805945 GACTGACGCGCTACAAGGG 60.806 63.158 5.73 0.00 0.00 3.95
2437 5574 2.109181 GCGCTACAAGGGCCTAGG 59.891 66.667 6.41 3.67 46.98 3.02
2438 5575 2.109181 CGCTACAAGGGCCTAGGC 59.891 66.667 26.55 26.55 41.06 3.93
2448 5585 4.074854 GCCTAGGCCTCTTTCCCT 57.925 61.111 24.19 0.00 34.56 4.20
2449 5586 3.242355 GCCTAGGCCTCTTTCCCTA 57.758 57.895 24.19 0.00 34.56 3.53
2450 5587 1.508256 GCCTAGGCCTCTTTCCCTAA 58.492 55.000 24.19 0.00 33.53 2.69
2451 5588 1.844497 GCCTAGGCCTCTTTCCCTAAA 59.156 52.381 24.19 0.00 33.53 1.85
2452 5589 2.241430 GCCTAGGCCTCTTTCCCTAAAA 59.759 50.000 24.19 0.00 33.53 1.52
2453 5590 3.685835 GCCTAGGCCTCTTTCCCTAAAAG 60.686 52.174 24.19 0.00 39.46 2.27
2463 5600 6.607004 TCTTTCCCTAAAAGAGAAGTCGAT 57.393 37.500 0.00 0.00 46.64 3.59
2464 5601 6.398918 TCTTTCCCTAAAAGAGAAGTCGATG 58.601 40.000 0.00 0.00 46.64 3.84
2465 5602 5.995565 TTCCCTAAAAGAGAAGTCGATGA 57.004 39.130 0.00 0.00 0.00 2.92
2466 5603 6.546428 TTCCCTAAAAGAGAAGTCGATGAT 57.454 37.500 0.00 0.00 0.00 2.45
2467 5604 7.655521 TTCCCTAAAAGAGAAGTCGATGATA 57.344 36.000 0.00 0.00 0.00 2.15
2468 5605 7.040473 TCCCTAAAAGAGAAGTCGATGATAC 57.960 40.000 0.00 0.00 0.00 2.24
2469 5606 6.040616 TCCCTAAAAGAGAAGTCGATGATACC 59.959 42.308 0.00 0.00 0.00 2.73
2470 5607 5.915758 CCTAAAAGAGAAGTCGATGATACCG 59.084 44.000 0.00 0.00 0.00 4.02
2471 5608 3.357166 AAGAGAAGTCGATGATACCGC 57.643 47.619 0.00 0.00 0.00 5.68
2472 5609 2.577700 AGAGAAGTCGATGATACCGCT 58.422 47.619 0.00 0.00 0.00 5.52
2473 5610 2.550606 AGAGAAGTCGATGATACCGCTC 59.449 50.000 0.00 0.00 0.00 5.03
2474 5611 2.290916 GAGAAGTCGATGATACCGCTCA 59.709 50.000 0.00 0.00 0.00 4.26
2475 5612 2.688446 AGAAGTCGATGATACCGCTCAA 59.312 45.455 0.00 0.00 0.00 3.02
2476 5613 3.130516 AGAAGTCGATGATACCGCTCAAA 59.869 43.478 0.00 0.00 0.00 2.69
2477 5614 3.735237 AGTCGATGATACCGCTCAAAT 57.265 42.857 0.00 0.00 0.00 2.32
2478 5615 3.643763 AGTCGATGATACCGCTCAAATC 58.356 45.455 0.00 0.00 0.00 2.17
2479 5616 3.068165 AGTCGATGATACCGCTCAAATCA 59.932 43.478 0.00 0.00 34.35 2.57
2480 5617 3.426859 GTCGATGATACCGCTCAAATCAG 59.573 47.826 0.00 0.00 33.40 2.90
2481 5618 3.317993 TCGATGATACCGCTCAAATCAGA 59.682 43.478 0.00 0.00 33.40 3.27
2482 5619 3.426859 CGATGATACCGCTCAAATCAGAC 59.573 47.826 0.00 0.00 33.40 3.51
2483 5620 3.179443 TGATACCGCTCAAATCAGACC 57.821 47.619 0.00 0.00 0.00 3.85
2484 5621 2.766263 TGATACCGCTCAAATCAGACCT 59.234 45.455 0.00 0.00 0.00 3.85
2485 5622 3.197766 TGATACCGCTCAAATCAGACCTT 59.802 43.478 0.00 0.00 0.00 3.50
2486 5623 1.813513 ACCGCTCAAATCAGACCTTG 58.186 50.000 0.00 0.00 0.00 3.61
2487 5624 1.089920 CCGCTCAAATCAGACCTTGG 58.910 55.000 0.00 0.00 0.00 3.61
2488 5625 0.449388 CGCTCAAATCAGACCTTGGC 59.551 55.000 0.00 0.00 0.00 4.52
2489 5626 1.831580 GCTCAAATCAGACCTTGGCT 58.168 50.000 0.00 0.00 0.00 4.75
2490 5627 1.471684 GCTCAAATCAGACCTTGGCTG 59.528 52.381 0.00 0.00 40.64 4.85
2491 5628 2.089980 CTCAAATCAGACCTTGGCTGG 58.910 52.381 0.00 0.00 39.54 4.85
2492 5629 1.180029 CAAATCAGACCTTGGCTGGG 58.820 55.000 0.00 0.00 39.54 4.45
2493 5630 1.075601 AAATCAGACCTTGGCTGGGA 58.924 50.000 0.00 0.00 39.54 4.37
2494 5631 1.302907 AATCAGACCTTGGCTGGGAT 58.697 50.000 0.00 0.00 39.54 3.85
2495 5632 0.549950 ATCAGACCTTGGCTGGGATG 59.450 55.000 0.00 1.62 39.54 3.51
2496 5633 1.751927 CAGACCTTGGCTGGGATGC 60.752 63.158 3.54 0.00 34.53 3.91
2497 5634 2.825836 GACCTTGGCTGGGATGCG 60.826 66.667 3.54 0.00 0.00 4.73
2500 5637 4.809496 CTTGGCTGGGATGCGCCT 62.809 66.667 4.18 0.00 46.42 5.52
2501 5638 3.405093 CTTGGCTGGGATGCGCCTA 62.405 63.158 4.18 0.00 46.42 3.93
2502 5639 2.687418 CTTGGCTGGGATGCGCCTAT 62.687 60.000 4.18 0.00 46.42 2.57
2503 5640 2.670934 GGCTGGGATGCGCCTATG 60.671 66.667 4.18 0.00 42.98 2.23
2504 5641 2.111878 GCTGGGATGCGCCTATGT 59.888 61.111 4.18 0.00 36.66 2.29
2505 5642 1.963338 GCTGGGATGCGCCTATGTC 60.963 63.158 4.18 0.00 36.66 3.06
2506 5643 1.447217 CTGGGATGCGCCTATGTCA 59.553 57.895 4.18 0.00 36.66 3.58
2507 5644 0.882042 CTGGGATGCGCCTATGTCAC 60.882 60.000 4.18 0.00 36.66 3.67
2508 5645 1.956170 GGGATGCGCCTATGTCACG 60.956 63.158 4.18 0.00 36.66 4.35
2513 5650 2.102357 CGCCTATGTCACGCGTCT 59.898 61.111 9.86 0.00 40.99 4.18
2514 5651 1.516386 CGCCTATGTCACGCGTCTT 60.516 57.895 9.86 0.00 40.99 3.01
2515 5652 1.742900 CGCCTATGTCACGCGTCTTG 61.743 60.000 9.86 0.00 40.99 3.02
2516 5653 1.999051 CCTATGTCACGCGTCTTGC 59.001 57.895 9.86 0.00 41.47 4.01
2517 5654 0.735978 CCTATGTCACGCGTCTTGCA 60.736 55.000 9.86 6.39 46.97 4.08
2518 5655 1.067693 CTATGTCACGCGTCTTGCAA 58.932 50.000 9.86 0.00 46.97 4.08
2519 5656 1.059692 CTATGTCACGCGTCTTGCAAG 59.940 52.381 20.81 20.81 46.97 4.01
2520 5657 0.599991 ATGTCACGCGTCTTGCAAGA 60.600 50.000 25.16 25.16 46.97 3.02
2521 5658 0.808060 TGTCACGCGTCTTGCAAGAA 60.808 50.000 29.99 11.42 46.97 2.52
2522 5659 0.111089 GTCACGCGTCTTGCAAGAAG 60.111 55.000 30.62 30.62 46.97 2.85
2523 5660 0.529773 TCACGCGTCTTGCAAGAAGT 60.530 50.000 33.13 26.86 46.97 3.01
2524 5661 1.136690 CACGCGTCTTGCAAGAAGTA 58.863 50.000 33.13 12.16 46.97 2.24
2525 5662 1.125021 CACGCGTCTTGCAAGAAGTAG 59.875 52.381 33.13 28.86 46.97 2.57
2526 5663 0.716108 CGCGTCTTGCAAGAAGTAGG 59.284 55.000 33.13 22.52 46.97 3.18
2527 5664 1.079503 GCGTCTTGCAAGAAGTAGGG 58.920 55.000 33.13 18.95 45.45 3.53
2528 5665 1.337823 GCGTCTTGCAAGAAGTAGGGA 60.338 52.381 33.13 9.98 45.45 4.20
2529 5666 2.611518 CGTCTTGCAAGAAGTAGGGAG 58.388 52.381 29.99 10.51 36.68 4.30
2530 5667 2.351455 GTCTTGCAAGAAGTAGGGAGC 58.649 52.381 29.99 11.12 36.68 4.70
2531 5668 1.279271 TCTTGCAAGAAGTAGGGAGCC 59.721 52.381 26.61 0.00 30.73 4.70
2532 5669 1.280421 CTTGCAAGAAGTAGGGAGCCT 59.720 52.381 22.31 0.00 37.71 4.58
2533 5670 0.905357 TGCAAGAAGTAGGGAGCCTC 59.095 55.000 0.00 0.00 34.61 4.70
2534 5671 0.179097 GCAAGAAGTAGGGAGCCTCG 60.179 60.000 0.00 0.00 34.61 4.63
2535 5672 0.179097 CAAGAAGTAGGGAGCCTCGC 60.179 60.000 0.00 0.00 34.61 5.03
2536 5673 1.331399 AAGAAGTAGGGAGCCTCGCC 61.331 60.000 4.99 0.00 34.61 5.54
2537 5674 2.038975 AAGTAGGGAGCCTCGCCA 59.961 61.111 4.99 0.00 34.61 5.69
2538 5675 2.022240 GAAGTAGGGAGCCTCGCCAG 62.022 65.000 4.99 0.00 34.61 4.85
2539 5676 4.228567 GTAGGGAGCCTCGCCAGC 62.229 72.222 4.99 0.00 34.61 4.85
2581 5718 3.818787 GAAGCGGCAGGCCACATG 61.819 66.667 5.01 0.00 45.17 3.21
2591 5728 3.446570 GCCACATGCCACAGCCTC 61.447 66.667 0.00 0.00 38.69 4.70
2592 5729 2.034532 CCACATGCCACAGCCTCA 59.965 61.111 0.00 0.00 38.69 3.86
2593 5730 2.338015 CCACATGCCACAGCCTCAC 61.338 63.158 0.00 0.00 38.69 3.51
2594 5731 2.034687 ACATGCCACAGCCTCACC 59.965 61.111 0.00 0.00 38.69 4.02
2595 5732 2.353958 CATGCCACAGCCTCACCT 59.646 61.111 0.00 0.00 38.69 4.00
2596 5733 1.303888 CATGCCACAGCCTCACCTT 60.304 57.895 0.00 0.00 38.69 3.50
2597 5734 0.896940 CATGCCACAGCCTCACCTTT 60.897 55.000 0.00 0.00 38.69 3.11
2598 5735 0.178953 ATGCCACAGCCTCACCTTTT 60.179 50.000 0.00 0.00 38.69 2.27
2599 5736 0.823356 TGCCACAGCCTCACCTTTTC 60.823 55.000 0.00 0.00 38.69 2.29
2600 5737 0.538287 GCCACAGCCTCACCTTTTCT 60.538 55.000 0.00 0.00 0.00 2.52
2601 5738 1.242076 CCACAGCCTCACCTTTTCTG 58.758 55.000 0.00 0.00 0.00 3.02
2602 5739 1.477558 CCACAGCCTCACCTTTTCTGT 60.478 52.381 0.00 0.00 38.40 3.41
2603 5740 2.301346 CACAGCCTCACCTTTTCTGTT 58.699 47.619 0.00 0.00 36.01 3.16
2604 5741 2.689983 CACAGCCTCACCTTTTCTGTTT 59.310 45.455 0.00 0.00 36.01 2.83
2605 5742 2.952310 ACAGCCTCACCTTTTCTGTTTC 59.048 45.455 0.00 0.00 34.69 2.78
2606 5743 3.217626 CAGCCTCACCTTTTCTGTTTCT 58.782 45.455 0.00 0.00 0.00 2.52
2607 5744 3.633986 CAGCCTCACCTTTTCTGTTTCTT 59.366 43.478 0.00 0.00 0.00 2.52
2608 5745 4.098501 CAGCCTCACCTTTTCTGTTTCTTT 59.901 41.667 0.00 0.00 0.00 2.52
2609 5746 4.711846 AGCCTCACCTTTTCTGTTTCTTTT 59.288 37.500 0.00 0.00 0.00 2.27
2610 5747 5.043903 GCCTCACCTTTTCTGTTTCTTTTC 58.956 41.667 0.00 0.00 0.00 2.29
2611 5748 5.394115 GCCTCACCTTTTCTGTTTCTTTTCA 60.394 40.000 0.00 0.00 0.00 2.69
2612 5749 6.630071 CCTCACCTTTTCTGTTTCTTTTCAA 58.370 36.000 0.00 0.00 0.00 2.69
2613 5750 6.753744 CCTCACCTTTTCTGTTTCTTTTCAAG 59.246 38.462 0.00 0.00 0.00 3.02
2614 5751 7.227049 TCACCTTTTCTGTTTCTTTTCAAGT 57.773 32.000 0.00 0.00 0.00 3.16
2615 5752 7.666623 TCACCTTTTCTGTTTCTTTTCAAGTT 58.333 30.769 0.00 0.00 0.00 2.66
2616 5753 8.147704 TCACCTTTTCTGTTTCTTTTCAAGTTT 58.852 29.630 0.00 0.00 0.00 2.66
2617 5754 8.773645 CACCTTTTCTGTTTCTTTTCAAGTTTT 58.226 29.630 0.00 0.00 0.00 2.43
2618 5755 9.337396 ACCTTTTCTGTTTCTTTTCAAGTTTTT 57.663 25.926 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.714703 ACCCGTGTTAAAGCTTGTTATTAAAA 58.285 30.769 0.00 0.00 0.00 1.52
27 28 6.880942 ACCCGTGTTAAAGCTTGTTATTAA 57.119 33.333 0.00 0.00 0.00 1.40
28 29 7.160726 ACTACCCGTGTTAAAGCTTGTTATTA 58.839 34.615 0.00 0.00 0.00 0.98
29 30 5.999600 ACTACCCGTGTTAAAGCTTGTTATT 59.000 36.000 0.00 0.00 0.00 1.40
30 31 5.554070 ACTACCCGTGTTAAAGCTTGTTAT 58.446 37.500 0.00 0.00 0.00 1.89
46 47 4.822036 TGTTGATTTTGACAACTACCCG 57.178 40.909 0.00 0.00 45.08 5.28
81 83 3.698040 GACTTGAGGACATTAGTACCGGA 59.302 47.826 9.46 0.00 0.00 5.14
82 84 3.446161 TGACTTGAGGACATTAGTACCGG 59.554 47.826 0.00 0.00 0.00 5.28
83 85 4.713824 TGACTTGAGGACATTAGTACCG 57.286 45.455 0.00 0.00 0.00 4.02
84 86 5.420409 CCTTGACTTGAGGACATTAGTACC 58.580 45.833 0.00 0.00 36.33 3.34
153 157 3.453717 TGGCATAATCTTGAGAGCTCAGT 59.546 43.478 17.77 0.00 41.13 3.41
317 328 2.929531 TCAGCTCGAACTTCAGCTAG 57.070 50.000 12.54 9.13 44.47 3.42
326 1363 0.318762 ACCTGACCTTCAGCTCGAAC 59.681 55.000 0.00 0.00 42.98 3.95
334 1371 4.023980 ACGAATGATCTACCTGACCTTCA 58.976 43.478 0.00 0.00 0.00 3.02
363 1400 1.818642 AGGAATGCTGACAACTCTGC 58.181 50.000 0.00 0.00 40.80 4.26
736 1817 4.048504 GCCACGTAATTTTCAAAACTGCT 58.951 39.130 0.00 0.00 0.00 4.24
893 1984 1.892209 CCCGTAAATGGGCTATGTCC 58.108 55.000 0.00 0.00 43.70 4.02
921 2012 4.021925 GCCTCACGCCCTCACCTT 62.022 66.667 0.00 0.00 0.00 3.50
924 2015 3.363844 GAGAGCCTCACGCCCTCAC 62.364 68.421 0.00 0.00 38.78 3.51
925 2016 3.071206 GAGAGCCTCACGCCCTCA 61.071 66.667 0.00 0.00 38.78 3.86
926 2017 4.200283 CGAGAGCCTCACGCCCTC 62.200 72.222 0.00 0.00 38.78 4.30
929 2020 4.200283 CTCCGAGAGCCTCACGCC 62.200 72.222 6.00 0.00 38.78 5.68
930 2021 4.200283 CCTCCGAGAGCCTCACGC 62.200 72.222 6.00 0.00 37.98 5.34
931 2022 1.388065 ATTCCTCCGAGAGCCTCACG 61.388 60.000 4.46 4.46 0.00 4.35
961 2052 6.507900 CACGGATCAGGCGAAGATATATATT 58.492 40.000 0.00 0.00 0.00 1.28
1122 2214 1.746220 CGTCATCCTCCTCGTCTTCTT 59.254 52.381 0.00 0.00 0.00 2.52
1123 2215 1.384525 CGTCATCCTCCTCGTCTTCT 58.615 55.000 0.00 0.00 0.00 2.85
1162 2254 2.895372 CGCCCTTGTACCGGATGC 60.895 66.667 9.46 0.00 0.00 3.91
1207 2299 4.774503 GCCTCAGCTTGCTCGCCT 62.775 66.667 0.00 0.00 35.50 5.52
1358 2457 2.889852 CCCTTTGCGTAGTACTCCTTC 58.110 52.381 0.00 0.00 0.00 3.46
1509 2609 0.743688 CGAGATCAGGGACAGTCTGG 59.256 60.000 4.53 0.00 33.36 3.86
1686 2789 8.246180 ACAACCATTTAATACAAGCTGAATCAG 58.754 33.333 5.78 5.78 34.12 2.90
1725 2828 6.598503 TCCTTGCTGATCAATATGTTGAGAT 58.401 36.000 10.79 0.00 46.75 2.75
1727 2830 5.821470 ACTCCTTGCTGATCAATATGTTGAG 59.179 40.000 10.79 0.00 46.75 3.02
1729 2832 5.277202 CGACTCCTTGCTGATCAATATGTTG 60.277 44.000 0.00 0.00 33.57 3.33
1730 2833 4.813161 CGACTCCTTGCTGATCAATATGTT 59.187 41.667 0.00 0.00 33.57 2.71
2043 5171 0.040067 CAGCCCTCTTGAAACGCAAC 60.040 55.000 0.00 0.00 31.96 4.17
2076 5204 3.806380 TGCAGCAATGGAAAAACACATT 58.194 36.364 0.00 0.00 37.78 2.71
2077 5205 3.472283 TGCAGCAATGGAAAAACACAT 57.528 38.095 0.00 0.00 0.00 3.21
2079 5207 5.519927 GGTATATGCAGCAATGGAAAAACAC 59.480 40.000 0.00 0.00 0.00 3.32
2081 5209 5.659463 TGGTATATGCAGCAATGGAAAAAC 58.341 37.500 0.00 0.00 0.00 2.43
2082 5210 5.929058 TGGTATATGCAGCAATGGAAAAA 57.071 34.783 0.00 0.00 0.00 1.94
2083 5211 6.482898 AATGGTATATGCAGCAATGGAAAA 57.517 33.333 0.00 0.00 0.00 2.29
2084 5212 6.324512 AGAAATGGTATATGCAGCAATGGAAA 59.675 34.615 0.00 0.00 0.00 3.13
2087 5215 5.717078 AGAAATGGTATATGCAGCAATGG 57.283 39.130 0.00 0.00 0.00 3.16
2152 5281 9.825972 CGCAAGAACTAATTGAGAAAATAGAAA 57.174 29.630 0.00 0.00 43.02 2.52
2169 5298 6.599244 TAAATCCTCATTTCATCGCAAGAACT 59.401 34.615 0.00 0.00 40.72 3.01
2173 5302 6.197276 CAGTAAATCCTCATTTCATCGCAAG 58.803 40.000 0.00 0.00 33.95 4.01
2178 5307 7.446625 AGGTATGCAGTAAATCCTCATTTCATC 59.553 37.037 0.00 0.00 33.95 2.92
2205 5334 8.867935 CATTTTAGACACACAACAAAACATTCA 58.132 29.630 0.00 0.00 0.00 2.57
2211 5340 6.646653 TGCAACATTTTAGACACACAACAAAA 59.353 30.769 0.00 0.00 0.00 2.44
2217 5346 7.763528 AGAAAATTGCAACATTTTAGACACACA 59.236 29.630 0.00 0.00 30.96 3.72
2238 5373 9.241919 TCAGGCAATATGAAAGACATAAGAAAA 57.758 29.630 0.00 0.00 43.47 2.29
2242 5377 8.442632 TTCTCAGGCAATATGAAAGACATAAG 57.557 34.615 0.00 0.00 43.47 1.73
2255 5392 8.765488 TCATTGGAATATTTTCTCAGGCAATA 57.235 30.769 0.00 0.00 32.16 1.90
2258 5395 6.834969 TCATCATTGGAATATTTTCTCAGGCA 59.165 34.615 0.00 0.00 32.16 4.75
2261 5398 8.357402 TGCATCATCATTGGAATATTTTCTCAG 58.643 33.333 0.00 0.00 32.16 3.35
2262 5399 8.240267 TGCATCATCATTGGAATATTTTCTCA 57.760 30.769 0.00 0.00 32.16 3.27
2274 5411 4.030314 ACTCCCTATGCATCATCATTGG 57.970 45.455 0.19 0.00 38.51 3.16
2319 5456 3.673956 CTTGGCCCCGCATACACGA 62.674 63.158 0.00 0.00 34.06 4.35
2329 5466 2.409870 CGAATGCTGACTTGGCCCC 61.410 63.158 0.00 0.00 0.00 5.80
2338 5475 4.486090 GTCTCTAGACAAACGAATGCTGA 58.514 43.478 5.24 0.00 44.18 4.26
2351 5488 8.462143 TCAATTCATACGTTTTGTCTCTAGAC 57.538 34.615 0.00 3.08 44.97 2.59
2354 5491 9.653287 ATCTTCAATTCATACGTTTTGTCTCTA 57.347 29.630 0.00 0.00 0.00 2.43
2356 5493 8.230486 ACATCTTCAATTCATACGTTTTGTCTC 58.770 33.333 0.00 0.00 0.00 3.36
2361 5498 9.743057 TTCAAACATCTTCAATTCATACGTTTT 57.257 25.926 0.00 0.00 0.00 2.43
2394 5531 1.340248 TCCGTCTCCAACAAGTCTGTC 59.660 52.381 0.00 0.00 33.45 3.51
2395 5532 1.068741 GTCCGTCTCCAACAAGTCTGT 59.931 52.381 0.00 0.00 37.39 3.41
2396 5533 1.341531 AGTCCGTCTCCAACAAGTCTG 59.658 52.381 0.00 0.00 0.00 3.51
2402 5539 1.658114 CGTCAGTCCGTCTCCAACA 59.342 57.895 0.00 0.00 0.00 3.33
2403 5540 1.733399 GCGTCAGTCCGTCTCCAAC 60.733 63.158 0.00 0.00 0.00 3.77
2411 5548 2.126618 TTGTAGCGCGTCAGTCCG 60.127 61.111 8.43 0.00 0.00 4.79
2418 5555 3.072468 TAGGCCCTTGTAGCGCGT 61.072 61.111 8.43 0.00 0.00 6.01
2419 5556 2.279517 CTAGGCCCTTGTAGCGCG 60.280 66.667 0.00 0.00 0.00 6.86
2420 5557 2.109181 CCTAGGCCCTTGTAGCGC 59.891 66.667 0.00 0.00 0.00 5.92
2421 5558 2.109181 GCCTAGGCCCTTGTAGCG 59.891 66.667 24.19 0.00 34.56 4.26
2431 5568 1.508256 TTAGGGAAAGAGGCCTAGGC 58.492 55.000 26.55 26.55 41.06 3.93
2432 5569 3.780850 TCTTTTAGGGAAAGAGGCCTAGG 59.219 47.826 4.42 3.67 46.69 3.02
2441 5578 6.398918 TCATCGACTTCTCTTTTAGGGAAAG 58.601 40.000 0.00 0.00 44.99 2.62
2442 5579 6.354794 TCATCGACTTCTCTTTTAGGGAAA 57.645 37.500 0.00 0.00 0.00 3.13
2443 5580 5.995565 TCATCGACTTCTCTTTTAGGGAA 57.004 39.130 0.00 0.00 0.00 3.97
2444 5581 6.040616 GGTATCATCGACTTCTCTTTTAGGGA 59.959 42.308 0.00 0.00 0.00 4.20
2445 5582 6.217294 GGTATCATCGACTTCTCTTTTAGGG 58.783 44.000 0.00 0.00 0.00 3.53
2446 5583 5.915758 CGGTATCATCGACTTCTCTTTTAGG 59.084 44.000 0.00 0.00 0.00 2.69
2447 5584 5.399892 GCGGTATCATCGACTTCTCTTTTAG 59.600 44.000 0.00 0.00 0.00 1.85
2448 5585 5.067413 AGCGGTATCATCGACTTCTCTTTTA 59.933 40.000 0.00 0.00 0.00 1.52
2449 5586 4.113354 GCGGTATCATCGACTTCTCTTTT 58.887 43.478 0.00 0.00 0.00 2.27
2450 5587 3.381908 AGCGGTATCATCGACTTCTCTTT 59.618 43.478 0.00 0.00 0.00 2.52
2451 5588 2.952978 AGCGGTATCATCGACTTCTCTT 59.047 45.455 0.00 0.00 0.00 2.85
2452 5589 2.550606 GAGCGGTATCATCGACTTCTCT 59.449 50.000 0.00 0.00 0.00 3.10
2453 5590 2.290916 TGAGCGGTATCATCGACTTCTC 59.709 50.000 0.00 0.00 0.00 2.87
2454 5591 2.298610 TGAGCGGTATCATCGACTTCT 58.701 47.619 0.00 0.00 0.00 2.85
2455 5592 2.776312 TGAGCGGTATCATCGACTTC 57.224 50.000 0.00 0.00 0.00 3.01
2456 5593 3.520290 TTTGAGCGGTATCATCGACTT 57.480 42.857 0.00 0.00 0.00 3.01
2457 5594 3.068165 TGATTTGAGCGGTATCATCGACT 59.932 43.478 0.00 0.00 0.00 4.18
2458 5595 3.381045 TGATTTGAGCGGTATCATCGAC 58.619 45.455 0.00 0.00 0.00 4.20
2459 5596 3.317993 TCTGATTTGAGCGGTATCATCGA 59.682 43.478 0.00 0.00 0.00 3.59
2460 5597 3.426859 GTCTGATTTGAGCGGTATCATCG 59.573 47.826 0.00 0.00 0.00 3.84
2461 5598 3.743396 GGTCTGATTTGAGCGGTATCATC 59.257 47.826 0.00 0.00 0.00 2.92
2462 5599 3.389329 AGGTCTGATTTGAGCGGTATCAT 59.611 43.478 0.00 0.00 39.21 2.45
2463 5600 2.766263 AGGTCTGATTTGAGCGGTATCA 59.234 45.455 0.00 0.00 39.21 2.15
2464 5601 3.460857 AGGTCTGATTTGAGCGGTATC 57.539 47.619 0.00 0.00 39.21 2.24
2465 5602 3.535561 CAAGGTCTGATTTGAGCGGTAT 58.464 45.455 0.00 0.00 39.21 2.73
2466 5603 2.354704 CCAAGGTCTGATTTGAGCGGTA 60.355 50.000 6.48 0.00 39.21 4.02
2467 5604 1.611673 CCAAGGTCTGATTTGAGCGGT 60.612 52.381 0.00 0.00 39.21 5.68
2468 5605 1.089920 CCAAGGTCTGATTTGAGCGG 58.910 55.000 6.48 0.00 39.21 5.52
2469 5606 0.449388 GCCAAGGTCTGATTTGAGCG 59.551 55.000 6.48 0.00 39.21 5.03
2470 5607 1.471684 CAGCCAAGGTCTGATTTGAGC 59.528 52.381 5.06 7.75 33.54 4.26
2471 5608 2.089980 CCAGCCAAGGTCTGATTTGAG 58.910 52.381 10.72 0.00 33.54 3.02
2472 5609 1.272092 CCCAGCCAAGGTCTGATTTGA 60.272 52.381 10.72 0.00 33.54 2.69
2473 5610 1.180029 CCCAGCCAAGGTCTGATTTG 58.820 55.000 10.72 0.00 33.54 2.32
2474 5611 1.075601 TCCCAGCCAAGGTCTGATTT 58.924 50.000 10.72 0.00 33.54 2.17
2475 5612 1.064166 CATCCCAGCCAAGGTCTGATT 60.064 52.381 10.72 0.00 33.54 2.57
2476 5613 0.549950 CATCCCAGCCAAGGTCTGAT 59.450 55.000 10.72 0.00 33.54 2.90
2477 5614 1.993653 CATCCCAGCCAAGGTCTGA 59.006 57.895 10.72 0.00 33.54 3.27
2478 5615 1.751927 GCATCCCAGCCAAGGTCTG 60.752 63.158 4.27 4.27 0.00 3.51
2479 5616 2.679716 GCATCCCAGCCAAGGTCT 59.320 61.111 0.00 0.00 0.00 3.85
2480 5617 2.825836 CGCATCCCAGCCAAGGTC 60.826 66.667 0.00 0.00 0.00 3.85
2487 5624 1.963338 GACATAGGCGCATCCCAGC 60.963 63.158 10.83 0.00 34.51 4.85
2488 5625 0.882042 GTGACATAGGCGCATCCCAG 60.882 60.000 10.83 0.00 34.51 4.45
2489 5626 1.146041 GTGACATAGGCGCATCCCA 59.854 57.895 10.83 0.00 34.51 4.37
2490 5627 1.956170 CGTGACATAGGCGCATCCC 60.956 63.158 10.83 0.00 34.51 3.85
2491 5628 3.630204 CGTGACATAGGCGCATCC 58.370 61.111 10.83 0.00 0.00 3.51
2497 5634 1.999051 CAAGACGCGTGACATAGGC 59.001 57.895 20.70 0.00 36.84 3.93
2498 5635 0.735978 TGCAAGACGCGTGACATAGG 60.736 55.000 20.70 0.00 46.97 2.57
2499 5636 1.059692 CTTGCAAGACGCGTGACATAG 59.940 52.381 22.31 2.68 46.97 2.23
2500 5637 1.067693 CTTGCAAGACGCGTGACATA 58.932 50.000 22.31 0.00 46.97 2.29
2501 5638 0.599991 TCTTGCAAGACGCGTGACAT 60.600 50.000 25.16 0.00 46.97 3.06
2502 5639 0.808060 TTCTTGCAAGACGCGTGACA 60.808 50.000 28.46 8.88 46.97 3.58
2503 5640 0.111089 CTTCTTGCAAGACGCGTGAC 60.111 55.000 28.46 2.09 46.97 3.67
2504 5641 0.529773 ACTTCTTGCAAGACGCGTGA 60.530 50.000 28.46 12.10 46.97 4.35
2505 5642 1.125021 CTACTTCTTGCAAGACGCGTG 59.875 52.381 28.46 17.11 46.97 5.34
2506 5643 1.419374 CTACTTCTTGCAAGACGCGT 58.581 50.000 28.46 24.31 46.97 6.01
2507 5644 0.716108 CCTACTTCTTGCAAGACGCG 59.284 55.000 28.46 20.38 46.97 6.01
2508 5645 1.079503 CCCTACTTCTTGCAAGACGC 58.920 55.000 28.46 0.00 42.89 5.19
2509 5646 2.611518 CTCCCTACTTCTTGCAAGACG 58.388 52.381 28.46 27.32 34.13 4.18
2510 5647 2.351455 GCTCCCTACTTCTTGCAAGAC 58.649 52.381 28.46 10.19 34.13 3.01
2511 5648 1.279271 GGCTCCCTACTTCTTGCAAGA 59.721 52.381 25.16 25.16 0.00 3.02
2512 5649 1.280421 AGGCTCCCTACTTCTTGCAAG 59.720 52.381 20.81 20.81 28.47 4.01
2513 5650 1.279271 GAGGCTCCCTACTTCTTGCAA 59.721 52.381 2.15 0.00 31.76 4.08
2514 5651 0.905357 GAGGCTCCCTACTTCTTGCA 59.095 55.000 2.15 0.00 31.76 4.08
2515 5652 0.179097 CGAGGCTCCCTACTTCTTGC 60.179 60.000 9.32 0.00 31.76 4.01
2516 5653 0.179097 GCGAGGCTCCCTACTTCTTG 60.179 60.000 9.32 0.00 31.76 3.02
2517 5654 1.331399 GGCGAGGCTCCCTACTTCTT 61.331 60.000 9.32 0.00 31.76 2.52
2518 5655 1.758906 GGCGAGGCTCCCTACTTCT 60.759 63.158 9.32 0.00 31.76 2.85
2519 5656 2.022240 CTGGCGAGGCTCCCTACTTC 62.022 65.000 18.79 0.00 31.76 3.01
2520 5657 2.038975 TGGCGAGGCTCCCTACTT 59.961 61.111 18.79 0.00 31.76 2.24
2521 5658 2.443016 CTGGCGAGGCTCCCTACT 60.443 66.667 18.79 0.00 31.76 2.57
2522 5659 4.228567 GCTGGCGAGGCTCCCTAC 62.229 72.222 18.79 9.93 31.76 3.18
2564 5701 3.818787 CATGTGGCCTGCCGCTTC 61.819 66.667 21.27 4.71 46.12 3.86
2574 5711 3.446570 GAGGCTGTGGCATGTGGC 61.447 66.667 0.00 0.00 40.87 5.01
2575 5712 2.034532 TGAGGCTGTGGCATGTGG 59.965 61.111 0.00 0.00 40.87 4.17
2576 5713 2.338015 GGTGAGGCTGTGGCATGTG 61.338 63.158 0.00 0.00 40.87 3.21
2577 5714 2.034687 GGTGAGGCTGTGGCATGT 59.965 61.111 0.00 0.00 40.87 3.21
2578 5715 0.896940 AAAGGTGAGGCTGTGGCATG 60.897 55.000 0.00 0.00 40.87 4.06
2579 5716 0.178953 AAAAGGTGAGGCTGTGGCAT 60.179 50.000 0.00 0.00 40.87 4.40
2580 5717 0.823356 GAAAAGGTGAGGCTGTGGCA 60.823 55.000 0.00 0.00 40.87 4.92
2581 5718 0.538287 AGAAAAGGTGAGGCTGTGGC 60.538 55.000 0.00 0.00 37.82 5.01
2582 5719 1.242076 CAGAAAAGGTGAGGCTGTGG 58.758 55.000 0.00 0.00 0.00 4.17
2583 5720 1.972872 ACAGAAAAGGTGAGGCTGTG 58.027 50.000 0.00 0.00 38.30 3.66
2584 5721 2.736670 AACAGAAAAGGTGAGGCTGT 57.263 45.000 0.00 0.00 41.19 4.40
2585 5722 3.217626 AGAAACAGAAAAGGTGAGGCTG 58.782 45.455 0.00 0.00 0.00 4.85
2586 5723 3.584733 AGAAACAGAAAAGGTGAGGCT 57.415 42.857 0.00 0.00 0.00 4.58
2587 5724 4.655762 AAAGAAACAGAAAAGGTGAGGC 57.344 40.909 0.00 0.00 0.00 4.70
2588 5725 6.207691 TGAAAAGAAACAGAAAAGGTGAGG 57.792 37.500 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.